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Gene: Glb1l2 (galactosidase, beta 1-like 2) Rattus norvegicus

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Symbol:

Glb1l2

Name:

galactosidase, beta 1-like 2

RGD ID:

1564436

Description:

Predicted to enable beta-galactosidase activity. Predicted to be involved in galactose catabolic process. Predicted to be active in vacuole. Orthologous to human GLB1L2 (galactosidase beta 1 like 2); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; aflatoxin B1.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

beta-galactosidase-1-like protein 2; LOC503194; RGD1564436; similar to Hypothetical protein MGC47419

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	GLB1L2 (galactosidase beta 1 like 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Glb1l2 (galactosidase, beta 1-like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	GLB1L2 (galactosidase beta 1 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC606786 (beta-galactosidase-1-like protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	LOC101976490 (beta-galactosidase-1-like protein 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	GLB1L2 (galactosidase beta 1 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	GLB1L2 (galactosidase beta 1 like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	GLB1L3 (galactosidase beta 1 like 3)	HGNC	OrthoDB
Homo sapiens (human):	OR5A1 (olfactory receptor family 5 subfamily A member 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	GLB1L2 (galactosidase beta 1 like 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	GLB1L2 (galactosidase beta 1 like 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Glb1l2 (galactosidase, beta 1-like 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Glb1l2 (galactosidase, beta 1-like 2)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-224e22.2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	si:dkey-224e22.2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	glb1l2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	glb1l2	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	33,391,201 - 33,442,587 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	33,390,678 - 33,442,695 (-)	Ensembl				GRCr8
mRatBN7.2	8	25,115,462 - 25,166,843 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	25,115,462 - 25,166,783 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	29,176,180 - 29,225,285 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	27,470,474 - 27,519,578 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	25,333,897 - 25,383,001 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	27,805,139 - 27,853,080 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	27,807,301 - 27,852,996 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	27,825,297 - 27,873,045 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	26,363,298 - 26,434,952 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	26,674,632 - 26,725,056 (-)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (EXP,ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-hydroxypropanoic acid (ISO)

4-hydroxyphenyl retinamide (ISO)

aflatoxin B1 (EXP)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

aristolochic acid A (ISO)

benzene (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

Benzo[k]fluoranthene (ISO)

bisphenol A (EXP,ISO)

carbon nanotube (ISO)

chlordecone (ISO)

cisplatin (EXP)

copper atom (ISO)

copper(0) (ISO)

dextran sulfate (ISO)

dioxygen (ISO)

diuron (EXP)

endosulfan (EXP)

gentamycin (EXP)

N-methyl-4-phenylpyridinium (ISO)

ozone (ISO)

paracetamol (EXP)

perfluorooctanoic acid (EXP)

progesterone (ISO)

rac-lactic acid (ISO)

sodium arsenite (ISO)

sodium fluoride (ISO)

sunitinib (ISO)

thioacetamide (EXP)

thiram (ISO)

titanium dioxide (ISO)

triclosan (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

carbohydrate metabolic process (IEA)

galactose catabolic process (IBA)

Cellular Component

vacuole (IBA)

Molecular Function

beta-galactosidase activity (IBA,IEA)

hydrolase activity (IEA)

hydrolase activity, acting on glycosyl bonds (IEA)

hydrolase activity, hydrolyzing O-glycosyl compounds (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Glb1l2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	8	33,391,201 - 33,442,587 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	8	33,390,678 - 33,442,695 (-)	Ensembl				GRCr8
mRatBN7.2	8	25,115,462 - 25,166,843 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	8	25,115,462 - 25,166,783 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	8	29,176,180 - 29,225,285 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	8	27,470,474 - 27,519,578 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	8	25,333,897 - 25,383,001 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	8	27,805,139 - 27,853,080 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	8	27,807,301 - 27,852,996 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	8	27,825,297 - 27,873,045 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	8	26,363,298 - 26,434,952 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	8	26,674,632 - 26,725,056 (-)	NCBI		Celera
Cytogenetic Map	8	q13	NCBI

GLB1L2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	134,331,988 - 134,376,324 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	134,331,886 - 134,378,341 (+)	Ensembl			hg38	GRCh38
GRCh37	11	134,201,882 - 134,246,218 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	133,707,016 - 133,751,428 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	131,374,433 - 131,418,732 (+)	NCBI		Celera
Cytogenetic Map	11	q25	NCBI
HuRef	11	130,156,667 - 130,200,929 (+)	NCBI		HuRef
CHM1_1	11	134,088,351 - 134,132,731 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	11	134,373,617 - 134,417,937 (+)	NCBI		T2T-CHM13v2.0

Glb1l2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	9	26,674,338 - 26,717,769 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	9	26,674,340 - 26,717,764 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	9	26,763,044 - 26,806,473 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	9	26,763,044 - 26,806,468 (-)	Ensembl			mm10	GRCm38
MGSCv37	9	26,570,629 - 26,614,002 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	9	26,512,490 - 26,555,863 (-)	NCBI		MGSCv36	mm8
Celera	9	24,022,342 - 24,065,727 (-)	NCBI		Celera
Cytogenetic Map	9	A4	NCBI
cM Map	9	11.56	NCBI

GLB1L2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	135,056,507 - 135,107,397 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	136,155,674 - 136,205,541 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	129,184,833 - 129,233,585 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	133,052,848 - 133,087,425 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	133,052,848 - 133,087,425 (+)	Ensembl			panPan2	panpan1.1

LOC606786
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	752,134 - 791,824 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	752,779 - 791,793 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	5	872,463 - 912,033 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	5	707,456 - 747,032 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	707,461 - 889,387 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	740,452 - 780,030 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	741,112 - 780,874 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	778,965 - 818,552 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

LOC101976490
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	116,298,111 - 116,325,176 (+)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936684	1,277,765 - 1,304,851 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GLB1L2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	60,954,524 - 60,993,588 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	60,954,513 - 60,993,584 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	67,574,960 - 67,614,264 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GLB1L2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	125,411,615 - 125,454,995 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	125,411,752 - 125,454,965 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666043	594,128 - 636,377 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Glb1l2
199 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	97
Count of miRNA genes:	71
Interacting mature miRNAs:	85
Transcripts:	ENSRNOT00000037790
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1357398	Slep3	Serum leptin concentration QTL 3	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
2317030	Wbc5	White blood cell count QTL 5	3.21	0.005	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	8	16994642	61994642	Rat
12880044	Am9	Aortic mass QTL 9		0.007	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	8	10382540	55382540	Rat
2317032	Ginf2	Gastrointestinal inflammation QTL 2	3.21	0.005	liver integrity trait (VT:0010547)	liver granuloma severity score (CMO:0002157)	8	12964165	57964165	Rat
2301416	Bp315	Blood pressure QTL 315		0.008	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	8	15952279	60952279	Rat
631842	Inf1	Infertility severity QTL 1	4.1	0.001	seminal gland mass (VT:0010524)	seminal vesicle wet weight (CMO:0001603)	8	31543661	76543661	Rat
2317036	Livw3	Liver weight QTL 3	2.43	0.01	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	8	12964165	57964165	Rat
1598824	Memor4	Memory QTL 4	2.5		exploratory behavior trait (VT:0010471)	total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)	8	17993862	62252873	Rat
12880023	Bw184	Body weight QTL 184		0.001	body mass (VT:0001259)	body weight (CMO:0000012)	8	10382540	55382540	Rat
12880028	Cm103	Cardiac mass QTL 103		0.02	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	8	10382540	55382540	Rat
2317051	Aia18	Adjuvant induced arthritis QTL 18	2.42		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	8	16994642	61994642	Rat
2317048	Ginf1	Gastrointestinal inflammation QTL 1	3.52	0.005	cecum mucosa thickness (VT:0010234)	enterocolitis severity score (CMO:0002138)	8	12964165	57964165	Rat
2302367	Slep5	Serum leptin concentration QTL 5	3.43		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	8	17994105	50763951	Rat
12880025	Cm102	Cardiac mass QTL 102		0.044	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	8	10382540	55382540	Rat

Markers in Region

BI281084

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	8	25,117,205 - 25,117,361 (+)	MAPPER	mRatBN7.2
Rnor_6.0	8	27,806,876 - 27,807,031	NCBI	Rnor6.0
Rnor_5.0	8	27,827,035 - 27,827,190	UniSTS	Rnor5.0
RGSC_v3.4	8	26,362,873 - 26,363,028	UniSTS	RGSC3.4
Celera	8	26,674,207 - 26,674,362	UniSTS
RH 3.4 Map	8	242.7	UniSTS
Cytogenetic Map	8	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	11	62	149	90	89	59	24	59	6	280	116	7	127	81	92	30	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001192018	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436558	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436559	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436560	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006242738	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595859	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039081999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082000	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039082001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474007	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000008	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000037790 ⟹ ENSRNOP00000037844

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	33,393,383 - 33,433,579 (-)	Ensembl
mRatBN7.2 Ensembl	8	25,117,631 - 25,157,831 (-)	Ensembl
Rnor_6.0 Ensembl	8	27,807,301 - 27,852,996 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097030 ⟹ ENSRNOP00000077046

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	33,391,122 - 33,442,551 (-)	Ensembl
mRatBN7.2 Ensembl	8	25,115,462 - 25,166,772 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109550 ⟹ ENSRNOP00000093666

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	33,393,383 - 33,442,547 (-)	Ensembl
mRatBN7.2 Ensembl	8	25,116,354 - 25,166,732 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000116810 ⟹ ENSRNOP00000096852

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	33,390,678 - 33,442,590 (-)	Ensembl
mRatBN7.2 Ensembl	8	25,116,354 - 25,166,783 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118429 ⟹ ENSRNOP00000077667

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	33,394,674 - 33,442,559 (-)	Ensembl
mRatBN7.2 Ensembl	8	25,118,922 - 25,166,723 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120253 ⟹ ENSRNOP00000091556

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	33,393,383 - 33,442,469 (-)	Ensembl
mRatBN7.2 Ensembl	8	25,117,631 - 25,166,720 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125138 ⟹ ENSRNOP00000112285

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	33,393,383 - 33,442,590 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000149078 ⟹ ENSRNOP00000105905

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	33,393,383 - 33,442,549 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000156399 ⟹ ENSRNOP00000112737

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	33,393,383 - 33,436,317 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000160337 ⟹ ENSRNOP00000110959

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	8	33,393,383 - 33,442,695 (-)	Ensembl

RefSeq Acc Id:

NM_001192018 ⟹ NP_001178947

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	33,393,383 - 33,442,469 (-)	NCBI
mRatBN7.2	8	25,117,631 - 25,166,720 (-)	NCBI
Rnor_6.0	8	27,807,301 - 27,852,996 (-)	NCBI
Rnor_5.0	8	27,825,297 - 27,873,045 (-)	NCBI
Celera	8	26,674,632 - 26,725,056 (-)	NCBI

Sequence:

show sequence

ATGCCCAAGTGGAGCCTGCGGCGGAGGCCGGGCCGCACACTCGGACTCCTGCTGCTGCTGGTCT
TGAGCTTCCTGGTGCTCCGCAGGTATCTGAATCCCAAGGTGGGCAGCTGTGACCGTGAAGGGGC
TCTGAGGTTGAACTGGACCTCTGTGCTTCCCCTATGGCTCCAACGTCAGCGCCTGGGACTTCGA
ACAAAAGGCCCAAACTTCATGCTGGAGGACTCCACCTTTCAGATTTTGGGGGGATCCATACACT
ATTTCCGTGTGCCCAGGGAATACTGGAGGGACCGCCTGCTCAAACTGAAAGCCTGTGGCTTGAA
TACCCTTACTACCTATGTGCCATGGAACCTCCATGAGCCAGAACGAGGCAAATTCGACTTCTCT
GGGAATCTGGACCTAGAGGCCTTTATCTGGCTGGCTGCAAAGATTGGCCTGTGGGTGATTCTGC
GACCAGGGCCCTACATCTGTAGTGAGATTGACCTCGGGGGCTTGCCCAGCTGGCTCCTTCAAGA
CCCTGACATGAAGCTAAGAACAACTTACCCTGGCTTCACTAAGGCAGTGGATCTTTACTTTGAC
CACCTGATGTCCAGGGTGGTGCCGCTTCAGTATAAGCATGGGGGGCCTATCATTGCGGTGCAAG
TGGAGAATGAGTACGGTTCCTATAACGGAGACCATGCGTACATGCCTTACATCAAGAAGGCACT
GGAAGACCGTGGCATCATTGAGATGCTCCTGACCTCAGACAACAAAGATGGCCTGGAAAAGGGA
GTGGTTGACGGAGTGCTGGCCACCATCAACTTACAGTCACAACAGGAGCTGGTGGCACTAAACA
GTATTCTCTTATCTATACAGGGGATTCAACCCAAGATGGTGATGGAGTACTGGACAGGGTGGTT
TGACTCGTGGGGTGGCTCCCACAACATCTTGGATTCCTCTGAGGTCCTGCAAACAGTGTCTGCC
ATCATCAAAGACGGCTCCTCCATCAACCTGTACATGTTCCATGGAGGCACAAATTTTGGCTTCA
TAAATGGAGCCATGCATTTTGGTGACTACAAGGCTGATGTTACCAGCTATGACTACGATGCTAT
ATTGACAGAGGCTGGAGATTACACTGCCAAATACACCAAGCTTCGAGAACTCTTTGGAACCTTC
TCAGGCGTCCCTCCACCTCCTCCACCTGAGCTTACTGCTAAGATGGTCTATGAGCCAGTGACTC
CATCTTTCTACCTGTCACTGTGGGACGCTCTCCTGTACATGGATAAGCCAATCACATCTGAGAT
ACCCATCAACATGGAGAACCTGCCGGTAAACAATGGTAATGGGCAGGCCTTTGGGTATGTCCTC
TATGAGACCACCATCTTTTCATCTGGCGTCCTCAGTGGCCTTGTGCGTGACAGAGGACAGGTCT
TTTTGAACAGAGTGTCCATAGGATTCTTGGACTATACGACAACGAAGATCACTATCCCCTTGAC
CCAGGGTTACACAATACTGAGGATCTTGGTGGAGAATCGTGGGCGAGTCAACTACGGAAATAAC
ATTGACAGCCAGCGCAAAGGTTTAATTGGAAATCTCTATCTGAATAATAAACCCCTGAAAAACT
TCAAAATCTACAGCCTGGATATGACAAAGCAGTTCTTTCAGAGGTTCGACATGGACAAGTGGAG
TGTCGTACCCAAAGAAATTACCTTTCCCGCTTTCTTCCTGGGCACCTTGTCAGTTGGCATTTAC
CCTTCTGACACATTTCTGAAGTTGGAGGGCTGGGTGAAGGGGGTTGTGCTCGTCAATGATCACA
ACCTTGGACGCTACTGGAATGTAGGACCTCAGGAGACTCTCTACCTCCCCGGTGTCTGGCTGGA
CAAAGGACTCAACAAGGTTATCATTTTCGAAGAGACAATGGCAGGCTCCATGGTACAGTCTACT
GATATCCCCCACCTGGGCAGGAACCAGTATGTTAACTGAACAGCAGCCCCTGCAGCCCCTGCTA
TGGCTGGCAGCTTCCTTCCTTCCTGTCCTGCAGGAGAAGTCATCGTAACTAGCAACCTCAGGGA
ATGAAGGGCTATATTCAACTCAGGCCAAAATTCTATGCCTAAGCCTAAGAGAAGATGGGGTAGC
GCTGTCTGGGATACACTCAGAGTGAGATGTCTTCTCTTCTGGTTTTGTGGACGGGCATTTTCTG
CTCCCCTGATCTTCCAGGGGAGGCCACAGAGCGGCCACAGAGTATGTAGTTAGTTATATCACCT
TCAAAGAAGGTGCTGAGGCGGGTGGGCACTGCCCTCTTCTGGAAGTGAAAGCCTCACTGGCCAG
CCTGCTGGTTCTAGGTAGGCTTTTTGAACATTCCCAGCAGGGTGTGGTCACACCCTAGACAGCT
TCTTTGTGCTCCTGAATTTGTGGGTTTGTCATTGTTTGTAGAGCCAAGAGAAAAGGGGTCTTAT
TTGA

hide sequence

RefSeq Acc Id:

XM_006242738 ⟹ XP_006242800

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	33,392,106 - 33,442,571 (-)	NCBI
mRatBN7.2	8	25,116,352 - 25,166,824 (-)	NCBI
Rnor_6.0	8	27,805,139 - 27,853,079 (-)	NCBI
Rnor_5.0	8	27,825,297 - 27,873,045 (-)	NCBI

Sequence:

show sequence

CCGCCCCTCCGGGCCAAGGCTTTGGCGCGCCGCTGAGTGTTGCTGGAGTAGGAACCCCGGTGTC
TACCAGCGGCTTTCGCGCGATGCCCAAGTGGAGCCTGCGGCGGAGGCCGGGCCGCACACTCGGA
CTCCTGCTGCTGCTGGTCTTGAGCTTCCTGGTGCTCCGCAGGTTGAACTGGACCTCTGTGCTTC
CCCTATGGCTCCAACGTCAGCGCCTGGGACTTCGAACAAAAGGCCCAAACTTCATGCTGGAGGA
CTCCACCTTTCAGATTTTGGGGGGATCCATACACTATTTCCGTGTGCCCAGGGAATACTGGAGG
GACCGCCTGCTCAAACTGAAAGCCTGTGGCTTGAATACCCTTACTACCTATGTGCCATGGAACC
TCCATGAGCCAGAACGAGGCAAATTCGACTTCTCTGGGAATCTGGACCTAGAGGCCTTTATCTG
GCTGGCTGCAAAGATTGGCCTGTGGGTGATTCTGCGACCAGGGCCCTACATCTGTAGTGAGATT
GACCTCGGGGGCTTGCCCAGCTGGCTCCTTCAAGACCCTGACATGAAGCTAAGAACAACTTACC
CTGGCTTCACTAAGGCAGTGGATCTTTACTTTGACCACCTGATGTCCAGGGTGGTGCCGCTTCA
GTATAAGCATGGGGGGCCTATCATTGCGGTGCAAGTGGAGAATGAGTACGGTTCCTATAACGGA
GACCATGCGTACATGCCTTACATCAAGAAGGCACTGGAAGACCGTGGCATCATTGAGATGCTCC
TGACCTCAGACAACAAAGATGGCCTGGAAAAGGGAGTGGTTGACGGAGTGCTGGCCACCATCAA
CTTACAGTCACAACAGGAGCTGGTGGCACTAAACAGTATTCTCTTATCTATACAGGGGATTCAA
CCCAAGATGGTGATGGAGTACTGGACAGGGTGGTTTGACTCGTGGGGTGGCTCCCACAACATCT
TGGATTCCTCTGAGGTCCTGCAAACAGTGTCTGCCATCATCAAAGACGGCTCCTCCATCAACCT
GTACATGTTCCATGGAGGCACAAATTTTGGCTTCATAAATGGAGCCATGCATTTTGGTGACTAC
AAGGCTGATGTTACCAGCTATGACTACGATGCTATATTGACAGAGGCTGGAGATTACACTGCCA
AATACACCAAGCTTCGAGAACTCTTTGGAACCTTCTCAGGCGTCCCTCCACCTCCTCCACCTGA
GCTTACTGCTAAGATGGTCTATGAGCCAGTGACTCCATCTTTCTACCTGTCACTGTGGGACGCT
CTCCTGTACATGGATAAGCCAATCACATCTGAGATACCCATCAACATGGAGAACCTGCCGGTAA
ACAATGGTAATGGGCAGGCCTTTGGGTATGTCCTCTATGAGACCACCATCTTTTCATCTGGCGT
CCTCAGTGGCCTTGTGCGTGACAGAGGACAGGTCTTTTTGAACAGAGTGTCCATAGGATTCTTG
GACTATACGACAACGAAGATCACTATCCCCTTGACCCAGGGTTACACAATACTGAGGATCTTGG
TGGAGAATCGTGGGCGAGTCAACTACGGAAATAACATTGACAGCCAGCGCAAAGGTTTAATTGG
AAATCTCTATCTGAATAATAAACCCCTGAAAAACTTCAAAATCTACAGCCTGGATATGACAAAG
CAGTTCTTTCAGAGGTTCGACATGGACAAGTGGAGTGTCGTACCCAAAGAAATTACCTTTCCCG
CTTTCTTCCTGGGCACCTTGTCAGTTGGCATTTACCCTTCTGACACATTTCTGAAGTTGGAGGG
CTGGGTGAAGGGGGTTGTGCTCGTCAATGATCACAACCTTGGACGCTACTGGAATGTAGGACCT
CAGGAGACTCTCTACCTCCCCGGTGTCTGGCTGGACAAAGGACTCAACAAGGTTATCATTTTCG
AAGAGACAATGGCAGGCTCCATGGTACAGTCTACTGATATCCCCCACCTGGGCAGGAACCAGTA
TGTTAACTGAACAGCAGCCCCTGCAGCCCCTGCTATGGCTGGCAGCTTCCTTCCTTCCTGTCCT
GCAGGAGAAGTCATCGTAACTAGCAACCTCAGGGAATGAAGGGCTATATTCAACTCAGGCCAAA
ATTCTATGCCTAAGCCTAAGAGAAGATGGGGTAGCGCTGTCTGGGATACACTCAGAGTGAGATG
TCTTCTCTTCTGGTTTTGTGGACGGGCATTTTCTGCTCCCCTGATCTTCCAGGGGAGGCCACAG
AGCGGCCACAGAGTATGTAGTTAGTTATATCACCTTCAAAGAAGGTGCTGAGGCGGGTGGGCAC
TGCCCTCTTCTGGAAGTGAAAGCCTCACTGGCCAGCCTGCTGGTTCTAGGTAGGCTTTTTGAAC
ATTCCCAGCAGGGTGTGGTCACACCCTAGACAGCTTCTTTGTGCTCCTGAATTTGTGGGTTTGT
CATTGTTTGTAGAGCCAAGAGAAAAGGGGTCTTATTTGAGTCAACTTTATTTTTTTGACTTTGC
ACCTGCCAGTTCTGGGGATCTGGAAGAAGTCTTTTCCTGTTCTCTCTGTCTCTTATTACATTAA
TCAGTTGATAAACTGAGCCTAAGAGAAACAGGCATGTTCAATCCAGCATGTTAGAGCTGGGCAC
TTCAGCAGAAACCACCTCACATCCATGCTCTCAGGAAGGGAATGGCAGAAGACCCAGCGAGGTG
GTGCTGGGCAGCTATGCCCGACTGCAGTAGAATCTGGGGTTAGCTAGAGCACACAGGTCTAGCA
CCGTCCTTGTTTTCAGCTCAGCTGGTTTCTTTGAACACTCGTCTTCCCCTTCCTGACCAAACAG
CAGGGAGGAGGAAAGGCAGCCTTCTGTCACACACAGTCCAGACTGAAGGCTCTTGTTCAAGGAA
TCAAGTGCAATGGCTTGGTGTGGTCTTGCCATTCTAAACTGCAATACACTTGAAGCAAACCTTC
TTTGTGGGGTCTCCAGCTTCTCTGTACCATTCTCAGCCATGGCAGAAAGTGACCTTTAGGGATC
CAGATACTGATGGTACCCAGCTGGCAGGTGGCACATGCCACTGGCTTCTTACCACCTTTCCTGA
TTTTCCTTCTCCTTGAAATGTCATTGCACTAAGAGCAGTCCAATCTCATGCTGGTGGTTAAGAG
TAAGAACTTTCTAGAAAGCTAAACCACAATATATAAGTTAGCTATAGGGGATAGTTTTTCTTCA
TAAATTACATCTGACATGTACTGCTCCAAGCCGATTGTCTTCAGTAATAGTGAAAATCAAATAA
CACACATCCGTGAGCATAGTGCCCACACAGAAGCCTAGCGAAGATGGGTTAGGCAAGAGCAGGC
AAACAGAGAGCCTTGCAGACTGACAGGCCAGCTTCCTGAGTATGACCAGGGACACTGTAGTCAG
GGCTACTGCAGCCACCGAGCTAAGCTCCCAGCTAATGTATCCGCAAGTGGTCATAGCGGAACAG
CCCATGTCCCACTGGGTCTGCGAAATCGAGGTTTTCTGTCTGTCTGTCTATCTGTCCATCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATTCTC
TCAGATGGGGTCATATTATGTAGCCCCGCCTTGATCTTTTGTTTCTCTTGCCTTAGCCTTGCAA
CTTCTCTACCATCATGCCCAACTCAAAGGAAGCTTTTTTTTTTTAAAGCCCTTTATTTGTCTTA
AAGTTTTAAAATAAAATTATGTGATAAGTTTCTTGCTTTTGCGTCTGGGGAAGTTAGGCGTATG
AGAGCCATGATGGGACGTGTGACCATTCAGAGGGCAGCCTGTGGGGGTTTGTTCTCTCTTTGAG
TCCTCAGATGGTCAGGGTTGGTGGAAAGCGCCTTCACCCACTGAGCTATCCTCCTCACCCTCCA
AGGAAGCTTTGCAAAGTGAAGCTTGTAGGTGATCCCTAAAGAACAAGAGCCACCAAGCCCCCAG
CTTTACCCGCTCTTGCTGGTTCCTTCTGAGATGCTTGAAATATCAAGCATCCAGCCAAGATACG
GAGGAGTGCGGGGCTACCAGAGCAGAGCCAGAGCCAGAGAGCAGTGTCACATTGTCACTTTGTC
TTGCATTACATAAGAGCAAAGCTGAATTAAGCAGGGCTGTGCTGGGAAGTGTGACAGCAATCGG
AATATAGAGGAATCTTACATCGCATCCTGCTGTAAGGGAGGAAGAAGCCTCCGAGTCGGTTTTA
TGCATACACGATTAGCTATGTATCCAGATAAGGTCTTTCTGTAGCAACATTTTTCTCTACCTCC
TTAGCATGTGCAGCCGACCTTAGCTCTCCAGCATCGACTAGTTCTTCCCGGTCCTGTGAACCAC
ATACGTGATCTCAGCCCCTCCAGAGTTCTTGCACCAACACCCAATTGCTCTGAGACTCTGCTCG
CTCCTCCTTCTCATTTTTGTCTCCTCACTGTGTGGGACCACACCTGTGGGATCTTGACACCAGC
ACCCTCCAGTGTCTGTCCCCAGCCTCACGGCAGGAACACAGACAGCTGGCCCTCACTATCTGTT
GCATGTATGTGACGAGGTCAGAAGTAGAACTTCGCTTTCCCTCATGTGACCTCTACTGCACTCT
GTCGAGTAAAAACAAGTGGAAATTC

hide sequence

RefSeq Acc Id:

XM_017595859 ⟹ XP_017451348

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	33,392,106 - 33,442,576 (-)	NCBI
mRatBN7.2	8	25,116,352 - 25,166,829 (-)	NCBI
Rnor_6.0	8	27,805,139 - 27,853,080 (-)	NCBI

Sequence:

show sequence

CCCGCCCCTCCGGGCCAAGGCTTTGGCGCGCCGCTGAGTGTTGCTGGAGTAGGAACCCCGGTGT
CTACCAGCGGCTTTCGCGCGATGCCCAAGTGGAGCCTGCGGCGGAGGCCGGGCCGCACACTCGG
ACTCCTGCTGCTGCTGGTCTTGAGCTTCCTGGTGCTCCGCAGGTATCTGAATCCCAAGGTGGGC
AGCTGTGACCGTGAAGGGGCTCTGAGCCTACGTGTCTTCATGTTGAACGTCCTGTCTGTCTTGT
TCCTGGCTGCAGCATCTGCTTGCTCTTCCCCTGCAGTGGGGCCCAGCCCAGGAAGTAGTAATGA
AGAAAGTCACCTTTCAAGGTTGAACTGGACCTCTGTGCTTCCCCTATGGCTCCAACGTCAGCGC
CTGGGACTTCGAACAAAAGGCCCAAACTTCATGCTGGAGGACTCCACCTTTCAGATTTTGGGGG
GATCCATACACTATTTCCGTGTGCCCAGGGAATACTGGAGGGACCGCCTGCTCAAACTGAAAGC
CTGTGGCTTGAATACCCTTACTACCTATGTGCCATGGAACCTCCATGAGCCAGAACGAGGCAAA
TTCGACTTCTCTGGGAATCTGGACCTAGAGGCCTTTATCTGGCTGGCTGCAAAGATTGGCCTGT
GGGTGATTCTGCGACCAGGGCCCTACATCTGTAGTGAGATTGACCTCGGGGGCTTGCCCAGCTG
GCTCCTTCAAGACCCTGACATGAAGCTAAGAACAACTTACCCTGGCTTCACTAAGGCAGTGGAT
CTTTACTTTGACCACCTGATGTCCAGGGTGGTGCCGCTTCAGTATAAGCATGGGGGGCCTATCA
TTGCGGTGCAAGTGGAGAATGAGTACGGTTCCTATAACGGAGACCATGCGTACATGCCTTACAT
CAAGAAGGCACTGGAAGACCGTGGCATCATTGAGATGCTCCTGACCTCAGACAACAAAGATGGC
CTGGAAAAGGGAGTGGTTGACGGAGTGCTGGCCACCATCAACTTACAGTCACAACAGGAGCTGG
TGGCACTAAACAGTATTCTCTTATCTATACAGGGGATTCAACCCAAGATGGTGATGGAGTACTG
GACAGGGTGGTTTGACTCGTGGGGTGGCTCCCACAACATCTTGGATTCCTCTGAGGTCCTGCAA
ACAGTGTCTGCCATCATCAAAGACGGCTCCTCCATCAACCTGTACATGTTCCATGGAGGCACAA
ATTTTGGCTTCATAAATGGAGCCATGCATTTTGGTGACTACAAGGCTGATGTTACCAGCTATGA
CTACGATGCTATATTGACAGAGGCTGGAGATTACACTGCCAAATACACCAAGCTTCGAGAACTC
TTTGGAACCTTCTCAGGCGTCCCTCCACCTCCTCCACCTGAGCTTACTGCTAAGATGGTCTATG
AGCCAGTGACTCCATCTTTCTACCTGTCACTGTGGGACGCTCTCCTGTACATGGATAAGCCAAT
CACATCTGAGATACCCATCAACATGGAGAACCTGCCGGTAAACAATGGTAATGGGCAGGCCTTT
GGGTATGTCCTCTATGAGACCACCATCTTTTCATCTGGCGTCCTCAGTGGCCTTGTGCGTGACA
GAGGACAGGTCTTTTTGAACAGAGTGTCCATAGGATTCTTGGACTATACGACAACGAAGATCAC
TATCCCCTTGACCCAGGGTTACACAATACTGAGGATCTTGGTGGAGAATCGTGGGCGAGTCAAC
TACGGAAATAACATTGACAGCCAGCGCAAAGGTTTAATTGGAAATCTCTATCTGAATAATAAAC
CCCTGAAAAACTTCAAAATCTACAGCCTGGATATGACAAAGCAGTTCTTTCAGAGGTTCGACAT
GGACAAGTGGAGTGTCGTACCCAAAGAAATTACCTTTCCCGCTTTCTTCCTGGGCACCTTGTCA
GTTGGCATTTACCCTTCTGACACATTTCTGAAGTTGGAGGGCTGGGTGAAGGGGGTTGTGCTCG
TCAATGATCACAACCTTGGACGCTACTGGAATGTAGGACCTCAGGAGACTCTCTACCTCCCCGG
TGTCTGGCTGGACAAAGGACTCAACAAGGTTATCATTTTCGAAGAGACAATGGCAGGCTCCATG
GTACAGTCTACTGATATCCCCCACCTGGGCAGGAACCAGTATGTTAACTGAACAGCAGCCCCTG
CAGCCCCTGCTATGGCTGGCAGCTTCCTTCCTTCCTGTCCTGCAGGAGAAGTCATCGTAACTAG
CAACCTCAGGGAATGAAGGGCTATATTCAACTCAGGCCAAAATTCTATGCCTAAGCCTAAGAGA
AGATGGGGTAGCGCTGTCTGGGATACACTCAGAGTGAGATGTCTTCTCTTCTGGTTTTGTGGAC
GGGCATTTTCTGCTCCCCTGATCTTCCAGGGGAGGCCACAGAGCGGCCACAGAGTATGTAGTTA
GTTATATCACCTTCAAAGAAGGTGCTGAGGCGGGTGGGCACTGCCCTCTTCTGGAAGTGAAAGC
CTCACTGGCCAGCCTGCTGGTTCTAGGTAGGCTTTTTGAACATTCCCAGCAGGGTGTGGTCACA
CCCTAGACAGCTTCTTTGTGCTCCTGAATTTGTGGGTTTGTCATTGTTTGTAGAGCCAAGAGAA
AAGGGGTCTTATTTGAGTCAACTTTATTTTTTTGACTTTGCACCTGCCAGTTCTGGGGATCTGG
AAGAAGTCTTTTCCTGTTCTCTCTGTCTCTTATTACATTAATCAGTTGATAAACTGAGCCTAAG
AGAAACAGGCATGTTCAATCCAGCATGTTAGAGCTGGGCACTTCAGCAGAAACCACCTCACATC
CATGCTCTCAGGAAGGGAATGGCAGAAGACCCAGCGAGGTGGTGCTGGGCAGCTATGCCCGACT
GCAGTAGAATCTGGGGTTAGCTAGAGCACACAGGTCTAGCACCGTCCTTGTTTTCAGCTCAGCT
GGTTTCTTTGAACACTCGTCTTCCCCTTCCTGACCAAACAGCAGGGAGGAGGAAAGGCAGCCTT
CTGTCACACACAGTCCAGACTGAAGGCTCTTGTTCAAGGAATCAAGTGCAATGGCTTGGTGTGG
TCTTGCCATTCTAAACTGCAATACACTTGAAGCAAACCTTCTTTGTGGGGTCTCCAGCTTCTCT
GTACCATTCTCAGCCATGGCAGAAAGTGACCTTTAGGGATCCAGATACTGATGGTACCCAGCTG
GCAGGTGGCACATGCCACTGGCTTCTTACCACCTTTCCTGATTTTCCTTCTCCTTGAAATGTCA
TTGCACTAAGAGCAGTCCAATCTCATGCTGGTGGTTAAGAGTAAGAACTTTCTAGAAAGCTAAA
CCACAATATATAAGTTAGCTATAGGGGATAGTTTTTCTTCATAAATTACATCTGACATGTACTG
CTCCAAGCCGATTGTCTTCAGTAATAGTGAAAATCAAATAACACACATCCGTGAGCATAGTGCC
CACACAGAAGCCTAGCGAAGATGGGTTAGGCAAGAGCAGGCAAACAGAGAGCCTTGCAGACTGA
CAGGCCAGCTTCCTGAGTATGACCAGGGACACTGTAGTCAGGGCTACTGCAGCCACCGAGCTAA
GCTCCCAGCTAATGTATCCGCAAGTGGTCATAGCGGAACAGCCCATGTCCCACTGGGTCTGCGA
AATCGAGGTTTTCTGTCTGTCTGTCTATCTGTCCATCTCTCTCTCTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCATATTCTCTCAGATGGGGTCATATTATGTAG
CCCCGCCTTGATCTTTTGTTTCTCTTGCCTTAGCCTTGCAACTTCTCTACCATCATGCCCAACT
CAAAGGAAGCTTTTTTTTTTTAAAGCCCTTTATTTGTCTTAAAGTTTTAAAATAAAATTATGTG
ATAAGTTTCTTGCTTTTGCGTCTGGGGAAGTTAGGCGTATGAGAGCCATGATGGGACGTGTGAC
CATTCAGAGGGCAGCCTGTGGGGGTTTGTTCTCTCTTTGAGTCCTCAGATGGTCAGGGTTGGTG
GAAAGCGCCTTCACCCACTGAGCTATCCTCCTCACCCTCCAAGGAAGCTTTGCAAAGTGAAGCT
TGTAGGTGATCCCTAAAGAACAAGAGCCACCAAGCCCCCAGCTTTACCCGCTCTTGCTGGTTCC
TTCTGAGATGCTTGAAATATCAAGCATCCAGCCAAGATACGGAGGAGTGCGGGGCTACCAGAGC
AGAGCCAGAGCCAGAGAGCAGTGTCACATTGTCACTTTGTCTTGCATTACATAAGAGCAAAGCT
GAATTAAGCAGGGCTGTGCTGGGAAGTGTGACAGCAATCGGAATATAGAGGAATCTTACATCGC
ATCCTGCTGTAAGGGAGGAAGAAGCCTCCGAGTCGGTTTTATGCATACACGATTAGCTATGTAT
CCAGATAAGGTCTTTCTGTAGCAACATTTTTCTCTACCTCCTTAGCATGTGCAGCCGACCTTAG
CTCTCCAGCATCGACTAGTTCTTCCCGGTCCTGTGAACCACATACGTGATCTCAGCCCCTCCAG
AGTTCTTGCACCAACACCCAATTGCTCTGAGACTCTGCTCGCTCCTCCTTCTCATTTTTGTCTC
CTCACTGTGTGGGACCACACCTGTGGGATCTTGACACCAGCACCCTCCAGTGTCTGTCCCCAGC
CTCACGGCAGGAACACAGACAGCTGGCCCTCACTATCTGTTGCATGTATGTGACGAGGTCAGAA
GTAGAACTTCGCTTTCCCTCATGTGACCTCTACTGCACTCTGTCGAGTAAAAACAAGTGGAAAT
TC

hide sequence

RefSeq Acc Id:

XM_039081998 ⟹ XP_038937926

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	33,391,201 - 33,442,587 (-)	NCBI
mRatBN7.2	8	25,115,462 - 25,166,843 (-)	NCBI

RefSeq Acc Id:

XM_039081999 ⟹ XP_038937927

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	33,391,201 - 33,442,582 (-)	NCBI
mRatBN7.2	8	25,115,462 - 25,166,838 (-)	NCBI

RefSeq Acc Id:

XM_039082000 ⟹ XP_038937928

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	33,391,201 - 33,442,577 (-)	NCBI
mRatBN7.2	8	25,115,462 - 25,166,830 (-)	NCBI

RefSeq Acc Id:

XM_039082001 ⟹ XP_038937929

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	8	33,391,201 - 33,429,696 (-)	NCBI
mRatBN7.2	8	25,115,462 - 25,153,917 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178947	(Get FASTA)	NCBI Sequence Viewer
	NP_001423487	(Get FASTA)	NCBI Sequence Viewer
	NP_001423488	(Get FASTA)	NCBI Sequence Viewer
	NP_001423489	(Get FASTA)	NCBI Sequence Viewer
	XP_006242800	(Get FASTA)	NCBI Sequence Viewer
	XP_017451348	(Get FASTA)	NCBI Sequence Viewer
	XP_038937926	(Get FASTA)	NCBI Sequence Viewer
	XP_038937927	(Get FASTA)	NCBI Sequence Viewer
	XP_038937928	(Get FASTA)	NCBI Sequence Viewer
	XP_038937929	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83350	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000037844.4
	ENSRNOP00000077046
	ENSRNOP00000077046.1
	ENSRNOP00000077667
	ENSRNOP00000077667.2
	ENSRNOP00000091556.1
	ENSRNOP00000093666
	ENSRNOP00000093666.1
	ENSRNOP00000096852.2
	ENSRNOP00000105905
	ENSRNOP00000105905.1
	ENSRNOP00000110959.1
	ENSRNOP00000112285.1
	ENSRNOP00000112737.1

RefSeq Acc Id:

NP_001178947 ⟸ NM_001192018

- UniProtKB:

D3ZHQ5 (UniProtKB/TrEMBL), A0A8I6AJ82 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPKWSLRRRPGRTLGLLLLLVLSFLVLRRYLNPKVGSCDREGALRLNWTSVLPLWLQRQRLGLR
TKGPNFMLEDSTFQILGGSIHYFRVPREYWRDRLLKLKACGLNTLTTYVPWNLHEPERGKFDFS
GNLDLEAFIWLAAKIGLWVILRPGPYICSEIDLGGLPSWLLQDPDMKLRTTYPGFTKAVDLYFD
HLMSRVVPLQYKHGGPIIAVQVENEYGSYNGDHAYMPYIKKALEDRGIIEMLLTSDNKDGLEKG
VVDGVLATINLQSQQELVALNSILLSIQGIQPKMVMEYWTGWFDSWGGSHNILDSSEVLQTVSA
IIKDGSSINLYMFHGGTNFGFINGAMHFGDYKADVTSYDYDAILTEAGDYTAKYTKLRELFGTF
SGVPPPPPPELTAKMVYEPVTPSFYLSLWDALLYMDKPITSEIPINMENLPVNNGNGQAFGYVL
YETTIFSSGVLSGLVRDRGQVFLNRVSIGFLDYTTTKITIPLTQGYTILRILVENRGRVNYGNN
IDSQRKGLIGNLYLNNKPLKNFKIYSLDMTKQFFQRFDMDKWSVVPKEITFPAFFLGTLSVGIY
PSDTFLKLEGWVKGVVLVNDHNLGRYWNVGPQETLYLPGVWLDKGLNKVIIFEETMAGSMVQST
DIPHLGRNQYVN

hide sequence

RefSeq Acc Id:

XP_006242800 ⟸ XM_006242738

- Peptide Label:

isoform X5

- Sequence:

show sequence

MPKWSLRRRPGRTLGLLLLLVLSFLVLRRLNWTSVLPLWLQRQRLGLRTKGPNFMLEDSTFQIL
GGSIHYFRVPREYWRDRLLKLKACGLNTLTTYVPWNLHEPERGKFDFSGNLDLEAFIWLAAKIG
LWVILRPGPYICSEIDLGGLPSWLLQDPDMKLRTTYPGFTKAVDLYFDHLMSRVVPLQYKHGGP
IIAVQVENEYGSYNGDHAYMPYIKKALEDRGIIEMLLTSDNKDGLEKGVVDGVLATINLQSQQE
LVALNSILLSIQGIQPKMVMEYWTGWFDSWGGSHNILDSSEVLQTVSAIIKDGSSINLYMFHGG
TNFGFINGAMHFGDYKADVTSYDYDAILTEAGDYTAKYTKLRELFGTFSGVPPPPPPELTAKMV
YEPVTPSFYLSLWDALLYMDKPITSEIPINMENLPVNNGNGQAFGYVLYETTIFSSGVLSGLVR
DRGQVFLNRVSIGFLDYTTTKITIPLTQGYTILRILVENRGRVNYGNNIDSQRKGLIGNLYLNN
KPLKNFKIYSLDMTKQFFQRFDMDKWSVVPKEITFPAFFLGTLSVGIYPSDTFLKLEGWVKGVV
LVNDHNLGRYWNVGPQETLYLPGVWLDKGLNKVIIFEETMAGSMVQSTDIPHLGRNQYVN

hide sequence

RefSeq Acc Id:

XP_017451348 ⟸ XM_017595859

- Peptide Label:

isoform X4

- Sequence:

show sequence

MPKWSLRRRPGRTLGLLLLLVLSFLVLRRYLNPKVGSCDREGALSLRVFMLNVLSVLFLAAASA
CSSPAVGPSPGSSNEESHLSRLNWTSVLPLWLQRQRLGLRTKGPNFMLEDSTFQILGGSIHYFR
VPREYWRDRLLKLKACGLNTLTTYVPWNLHEPERGKFDFSGNLDLEAFIWLAAKIGLWVILRPG
PYICSEIDLGGLPSWLLQDPDMKLRTTYPGFTKAVDLYFDHLMSRVVPLQYKHGGPIIAVQVEN
EYGSYNGDHAYMPYIKKALEDRGIIEMLLTSDNKDGLEKGVVDGVLATINLQSQQELVALNSIL
LSIQGIQPKMVMEYWTGWFDSWGGSHNILDSSEVLQTVSAIIKDGSSINLYMFHGGTNFGFING
AMHFGDYKADVTSYDYDAILTEAGDYTAKYTKLRELFGTFSGVPPPPPPELTAKMVYEPVTPSF
YLSLWDALLYMDKPITSEIPINMENLPVNNGNGQAFGYVLYETTIFSSGVLSGLVRDRGQVFLN
RVSIGFLDYTTTKITIPLTQGYTILRILVENRGRVNYGNNIDSQRKGLIGNLYLNNKPLKNFKI
YSLDMTKQFFQRFDMDKWSVVPKEITFPAFFLGTLSVGIYPSDTFLKLEGWVKGVVLVNDHNLG
RYWNVGPQETLYLPGVWLDKGLNKVIIFEETMAGSMVQSTDIPHLGRNQYVN

hide sequence

Ensembl Acc Id:

ENSRNOP00000037844 ⟸ ENSRNOT00000037790

RefSeq Acc Id:	XP_038937926 ⟸ XM_039081998
- Peptide Label:	isoform X1
- UniProtKB:	D3ZHQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937927 ⟸ XM_039081999
- Peptide Label:	isoform X2
- UniProtKB:	D3ZHQ5 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038937928 ⟸ XM_039082000
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038937929 ⟸ XM_039082001
- Peptide Label:	isoform X6

Ensembl Acc Id:

ENSRNOP00000077667 ⟸ ENSRNOT00000118429

Ensembl Acc Id:

ENSRNOP00000096852 ⟸ ENSRNOT00000116810

Ensembl Acc Id:

ENSRNOP00000091556 ⟸ ENSRNOT00000120253

Ensembl Acc Id:

ENSRNOP00000093666 ⟸ ENSRNOT00000109550

Ensembl Acc Id:

ENSRNOP00000077046 ⟸ ENSRNOT00000097030

Ensembl Acc Id:

ENSRNOP00000105905 ⟸ ENSRNOT00000149078

Ensembl Acc Id:

ENSRNOP00000112737 ⟸ ENSRNOT00000156399

Ensembl Acc Id:

ENSRNOP00000110959 ⟸ ENSRNOT00000160337

Ensembl Acc Id:

ENSRNOP00000112285 ⟸ ENSRNOT00000125138

Protein Domains

Beta-galactosidase 1-like first all-beta Beta-galactosidase galactose-binding Glycoside hydrolase 35 catalytic

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZHQ5-F1-model_v2	AlphaFold	D3ZHQ5	1-652	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13695816

Promoter ID:

EPDNEW_R6340

Type:

multiple initiation site

Name:

Glb1l2_1

Description:

galactosidase, beta 1-like 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	8	27,853,030 - 27,853,090	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564436	AgrOrtholog
BioCyc Gene	G2FUF-31312	BioCyc
Ensembl Genes	ENSRNOG00000007561	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000037790.6	UniProtKB/TrEMBL
	ENSRNOT00000097030	ENTREZGENE
	ENSRNOT00000097030.2	UniProtKB/TrEMBL
	ENSRNOT00000109550	ENTREZGENE
	ENSRNOT00000109550.2	UniProtKB/TrEMBL
	ENSRNOT00000116810.2	UniProtKB/TrEMBL
	ENSRNOT00000118429	ENTREZGENE
	ENSRNOT00000118429.2	UniProtKB/TrEMBL
	ENSRNOT00000120253.2	UniProtKB/TrEMBL
	ENSRNOT00000125138.1	UniProtKB/TrEMBL
	ENSRNOT00000149078	ENTREZGENE
	ENSRNOT00000149078.1	UniProtKB/TrEMBL
	ENSRNOT00000156399.1	UniProtKB/TrEMBL
	ENSRNOT00000160337.1	UniProtKB/TrEMBL
Gene3D-CATH	Galactose-binding domain-like	UniProtKB/TrEMBL
	Glycosidases	UniProtKB/TrEMBL
InterPro	B-gal_1-like	UniProtKB/TrEMBL
	BetaGal1-like_ABD1	UniProtKB/TrEMBL
	BetaGal_gal-bd	UniProtKB/TrEMBL
	Galactose-bd-like	UniProtKB/TrEMBL
	Gly_Hdrlase_35_cat	UniProtKB/TrEMBL
	Glyco_hydro_35_CS	UniProtKB/TrEMBL
	Glyco_hydro_catalytic_core	UniProtKB/TrEMBL
	Glycoside_Hdrlase_35	UniProtKB/TrEMBL
KEGG Report	rno:503194	UniProtKB/TrEMBL
NCBI Gene	503194	ENTREZGENE
PANTHER	Glyco_hydro_35	UniProtKB/TrEMBL
Pfam	BetaGal_ABD_1	UniProtKB/TrEMBL
	BetaGal_gal-bd	UniProtKB/TrEMBL
	Glyco_hydro_35	UniProtKB/TrEMBL
PhenoGen	Glb1l2	PhenoGen
PIRSF	B-gal	UniProtKB/TrEMBL
PRINTS	GLHYDRLASE35	UniProtKB/TrEMBL
PROSITE	GLYCOSYL_HYDROL_F35	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000007561	RatGTEx
Superfamily-SCOP	Gal_bind_like	UniProtKB/TrEMBL
	Glyco_hydro_cat	UniProtKB/TrEMBL
UniProt	A0A8I5Y144	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y841_RAT	UniProtKB/TrEMBL
	A0A8I6AFV3_RAT	UniProtKB/TrEMBL
	A0A8I6AJ82	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ARG8	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LJ43_RAT	UniProtKB/TrEMBL
	A0ABK0LJW5_RAT	UniProtKB/TrEMBL
	A0ABK0LNZ7_RAT	UniProtKB/TrEMBL
	A0ABK0M9B8_RAT	UniProtKB/TrEMBL
	D3ZHQ5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Glb1l2	galactosidase, beta 1-like 2	RGD1564436_predicted	similar to Hypothetical protein MGC47419 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564436_predicted	similar to Hypothetical protein MGC47419 (predicted)	LOC503194	similar to Hypothetical protein MGC47419	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC503194	similar to Hypothetical protein MGC47419			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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