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Gene: Pax7 (paired box 7) Rattus norvegicus

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Symbol:

Pax7

Name:

paired box 7

RGD ID:

1564360

Description:

Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in nervous system development; regulation of transcription by RNA polymerase II; and skeletal muscle satellite cell differentiation. Predicted to act upstream of or within several processes, including nervous system development; positive regulation of myoblast proliferation; and skeletal system development. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in alveolar rhabdomyosarcoma and congenital myopathy 19. Orthologous to human PAX7 (paired box 7); INTERACTS WITH bisphenol A; dimethylarsinic acid; Monobutylphthalate.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC500574; paired box gene 7; paired box protein Pax-7; RGD1564360; similar to paired box gene 7 isoform 1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PAX7 (paired box 7)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Pax7 (paired box 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pax7 (paired box 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PAX7 (paired box 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PAX7 (paired box 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pax7 (paired box 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PAX7 (paired box 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PAX7 (paired box 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Pax7 (paired box 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Pax7 (paired box 7)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PAX3 (paired box 3)	HGNC	OrthoDB
Homo sapiens (human):	ZNF718 (zinc finger protein 718)	HGNC	OMA
Alliance orthologs ³
Mus musculus (house mouse):	Pax7 (paired box 7)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PAX7 (paired box 7)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pax7b (paired box 7b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pax7b (paired box 7b)	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pax7a (paired box 7a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pax7a (paired box 7a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	pax-3	Alliance	DIOPT (OrthoFinder\|PANTHER)
Caenorhabditis elegans (roundworm):	pax-3	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	gsb	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	gsb-n	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	gsb-n	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	prd	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	prd	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pax7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pax7	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	157,279,623 - 157,381,188 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	157,279,623 - 157,381,121 (-)	Ensembl				GRCr8
mRatBN7.2	5	151,996,368 - 152,098,023 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	151,999,092 - 152,097,979 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	154,697,987 - 154,795,617 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	156,472,367 - 156,570,000 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	156,453,975 - 156,551,269 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	158,211,001 - 158,313,510 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	158,214,616 - 158,313,426 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	161,944,011 - 162,045,053 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	158,547,765 - 158,648,053 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	150,374,628 - 150,471,191 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

alveolar rhabdomyosarcoma (ISO)

congenital myopathy 19 (ISO)

hereditary breast ovarian cancer syndrome (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

afimoxifene (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

arsenite(3-) (ISO)

atrazine (ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-chloroethyl) sulfide (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

butanal (ISO)

Butylbenzyl phthalate (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

choline (ISO)

dexamethasone (ISO)

dimethylarsinic acid (EXP)

dorsomorphin (ISO)

folic acid (ISO)

fonofos (ISO)

indometacin (ISO)

irinotecan (ISO)

L-methionine (ISO)

mercury dibromide (ISO)

methapyrilene (ISO)

Monobutylphthalate (EXP)

N,N-diethyl-m-toluamide (EXP)

niclosamide (ISO)

p-chloromercuribenzoic acid (ISO)

panobinostat (ISO)

paracetamol (ISO)

parathion (ISO)

permethrin (EXP)

pirinixic acid (ISO)

rifampicin (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

terbufos (ISO)

testosterone (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

vorinostat (ISO)

XL147 (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cartilage development (ISO)

chromatin remodeling (ISO)

dorsal/ventral neural tube patterning (ISO)

embryonic skeletal system development (ISO)

muscle organ development (IEA)

muscle tissue morphogenesis (ISO)

nervous system development (IBA)

neural tube development (IEA)

neuron fate commitment (IEA,ISO)

positive regulation of cell population proliferation (IEA)

positive regulation of myoblast proliferation (ISO)

positive regulation of transcription by RNA polymerase II (ISO)

regulation of cell fate commitment (ISO)

regulation of chromatin organization (ISO)

regulation of DNA-templated transcription (IEA)

regulation of gene expression (ISO)

regulation of transcription by RNA polymerase II (IBA)

skeletal muscle organ development (IEA)

skeletal muscle satellite cell commitment (ISO)

skeletal muscle satellite cell differentiation (IEA,ISO)

skeletal muscle tissue development (ISO)

skeletal muscle tissue regeneration (ISO)

spinal cord association neuron differentiation (IEA,ISO)

tissue morphogenesis (IEA)

Cellular Component

nucleus (IEA,ISO)

Molecular Function

DNA binding (IEA)

DNA-binding transcription factor activity (IEA,ISO)

DNA-binding transcription factor activity, RNA polymerase II-specific (IBA,IEA,ISO)

protein binding (ISO)

RNA polymerase II cis-regulatory region sequence-specific DNA binding (IBA)

sequence-specific DNA binding (IEA,ISO)

sequence-specific double-stranded DNA binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:8631261	PMID:9230312	PMID:9608680	PMID:9858722	PMID:11030621	PMID:17301672	PMID:18508329	PMID:18590716	PMID:18808442	PMID:19101644	PMID:19192888	PMID:19531352
PMID:21131290	PMID:22358842	PMID:22862948	PMID:23070814	PMID:27434733	PMID:35124612

Genomics

Comparative Map Data

Pax7
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	157,279,623 - 157,381,188 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	157,279,623 - 157,381,121 (-)	Ensembl				GRCr8
mRatBN7.2	5	151,996,368 - 152,098,023 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	151,999,092 - 152,097,979 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	5	154,697,987 - 154,795,617 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	5	156,472,367 - 156,570,000 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	5	156,453,975 - 156,551,269 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	5	158,211,001 - 158,313,510 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	158,214,616 - 158,313,426 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	161,944,011 - 162,045,053 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	158,547,765 - 158,648,053 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	150,374,628 - 150,471,191 (-)	NCBI		Celera
Cytogenetic Map	5	q36	NCBI

PAX7
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	18,630,846 - 18,748,866 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	18,630,846 - 18,748,876 (+)	Ensembl			hg38	GRCh38
GRCh37	1	18,957,340 - 19,075,360 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	18,830,087 - 18,935,219 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	17,287,191 - 17,405,157 (+)	NCBI		Celera
Cytogenetic Map	1	p36.13	NCBI
HuRef	1	17,203,638 - 17,321,488 (+)	NCBI		HuRef
CHM1_1	1	19,066,628 - 19,184,492 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	18,450,908 - 18,568,930 (+)	NCBI		T2T-CHM13v2.0

Pax7
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	139,464,357 - 139,560,841 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	139,464,373 - 139,560,839 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	139,737,059 - 139,833,530 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	139,737,062 - 139,833,528 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	139,293,996 - 139,388,883 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	139,010,157 - 139,105,044 (-)	NCBI		MGSCv36	mm8
Celera	4	141,530,711 - 141,629,332 (-)	NCBI		Celera
Cytogenetic Map	4	D3	NCBI
cM Map	4	70.83	NCBI

Pax7
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955527	474,403 - 574,689 (-)	Ensembl
ChiLan1.0	NW_004955527	474,450 - 573,869 (-)	NCBI	ChiLan1.0	ChiLan1.0

PAX7
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	208,370,499 - 208,484,647 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	207,487,082 - 207,601,269 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	17,589,513 - 17,707,442 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	18,639,641 - 18,756,952 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	18,639,641 - 18,756,952 (+)	Ensembl			panPan2	panpan1.1

PAX7
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	2	79,813,835 - 79,952,490 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	2	79,815,748 - 79,915,003 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	2	76,352,286 - 76,432,189 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	2	80,440,906 - 80,541,477 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	2	80,442,818 - 80,541,487 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	2	77,229,920 - 77,297,584 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	2	78,231,829 - 78,311,699 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	2	79,280,989 - 79,381,745 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pax7
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	39,220,382 - 39,310,785 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936474	5,045,284 - 5,131,859 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936474	5,045,284 - 5,131,859 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PAX7
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	77,161,097 - 77,267,415 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	77,160,827 - 77,268,626 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PAX7
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	113,810,646 - 113,929,136 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	113,823,392 - 113,928,548 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	2,225,692 - 2,345,698 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Pax7
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624764	3,853,055 - 3,947,521 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624764	3,853,055 - 3,951,182 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Pax7
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	18,341,378 - 18,437,923 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Pax7
997 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	64
Count of miRNA genes:	59
Interacting mature miRNAs:	63
Transcripts:	ENSRNOT00000025488
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
10053720	Scort26	Serum corticosterone level QTL 26	2.06	0.0147	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	5	130249266	172190305	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
1354583	Despr3	Despair related QTL3	4.98	0.0002	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	5	132930505	172190305	Rat
61444	Strs2	Sensitivity to stroke QTL 2	4.7		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	5	141212838	172190305	Rat
1300119	Bp180	Blood pressure QTL 180	3.82		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	149642129	171146538	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
8552908	Pigfal4	Plasma insulin-like growth factor 1 level QTL 4	6.6		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	133789363	172190305	Rat
1331803	Rf32	Renal function QTL 32	2.798		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	134369199	172190305	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
7794791	Mcs33	Mammary carcinoma susceptibility QTL 33	1.93		mammary gland integrity trait (VT:0010552)	mammary tumor incidence/prevalence measurement (CMO:0000946)	5	136631198	172190305	Rat
1354631	Swd2	Spike wave discharge measurement QTL 2	3.64	0.0002	brain electrophysiology trait (VT:0010557)	brain total spike-and-wave discharge duration (CMO:0001740)	5	156396728	172190305	Rat
1598861	Cm64	Cardiac mass QTL 64	2.9		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	133081618	172190305	Rat
631263	Cm24	Cardiac mass QTL 24	3.5		heart mass (VT:0007028)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	149805999	162987697	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
631505	Bp103	Blood pressure QTL 103	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	138002522	170842766	Rat
1581505	Rf54	Renal function QTL 54			kidney physiology trait (VT:0002136)	kidney 20-HETE level (CMO:0001854)	5	133270647	172190305	Rat
2317753	Glom24	Glomerulus QTL 24	3.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	5	141764300	172190305	Rat
1331721	Bp210	Blood pressure QTL 210	3.413		arterial blood pressure trait (VT:2000000)	blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)	5	148093485	172129029	Rat
8694169	Bw148	Body weight QTL 148	5	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	133789363	172190305	Rat
1581510	Cm54	Cardiac mass QTL 54	3.4	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	5	125969677	172190305	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
631272	Lanf1	Left ventricular atrial natriuretic factor QTL 1	12		heart left ventricle natriuretic peptide A amount (VT:0010596)	heart left ventricle natriuretic peptide A level (CMO:0002165)	5	156396728	167181764	Rat
724525	Bp147	Blood pressure QTL 147	4.3	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	131708216	172190305	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
2313096	Bmd78	Bone mineral density QTL 78	3.1	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	5	149661912	166600247	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298090	Bp155	Blood pressure QTL 155	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	156289283	171137955	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1598819	Bp292	Blood pressure QTL 292	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	133081618	172190305	Rat

Markers in Region

D5Got93

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	5	157,368,644 - 157,368,770 (+)	Marker Load Pipeline
Rnor_5.0	5	162,032,488 - 162,032,573	NCBI	Rnor5.0
Rnor_5.0	5	162,032,498 - 162,032,573	NCBI	Rnor5.0
RGSC_v3.4	5	158,634,503 - 158,634,661	RGD	RGSC3.4
RGSC_v3.4	5	158,634,513 - 158,634,638	UniSTS	RGSC3.4
RGSC_v3.1	5	158,644,552 - 158,644,677	RGD
RH 3.4 Map	5	1043.2	RGD
RH 3.4 Map	5	1043.2	UniSTS
Cytogenetic Map	5	q36	UniSTS

AU047910

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	152,075,707 - 152,075,941 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	158,290,985 - 158,291,220	NCBI	Rnor6.0
Rnor_5.0	5	162,022,883 - 162,023,118	UniSTS	Rnor5.0
RGSC_v3.4	5	158,625,161 - 158,625,396	UniSTS	RGSC3.4
Celera	5	150,449,529 - 150,449,764	UniSTS
Cytogenetic Map	5	q36	UniSTS

Pax7

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	5	152,094,581 - 152,095,226 (+)	MAPPER	mRatBN7.2
Rnor_6.0	5	158,310,077 - 158,310,721	NCBI	Rnor6.0
Rnor_5.0	5	162,041,622 - 162,042,266	UniSTS	Rnor5.0
RGSC_v3.4	5	158,644,704 - 158,645,348	UniSTS	RGSC3.4
Celera	5	150,467,842 - 150,468,486	UniSTS
Cytogenetic Map	5	q36	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system
11	3	91	17	25	7	5	7	6	46	26	9	76	5	49	18

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006239263	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039110635	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473968	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000025488 ⟹ ENSRNOP00000025488

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	157,279,623 - 157,381,121 (-)	Ensembl
mRatBN7.2 Ensembl	5	151,999,092 - 152,097,979 (-)	Ensembl
Rnor_6.0 Ensembl	5	158,214,616 - 158,313,426 (-)	Ensembl

RefSeq Acc Id:

NM_001191984 ⟹ NP_001178913

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	157,279,623 - 157,381,121 (-)	NCBI
mRatBN7.2	5	151,996,454 - 152,097,966 (-)	NCBI
Rnor_6.0	5	158,214,616 - 158,313,426 (-)	NCBI
Rnor_5.0	5	161,944,011 - 162,045,053 (-)	NCBI
Celera	5	150,374,628 - 150,471,191 (-)	NCBI

Sequence:

show sequence

ATGGCGGCGCTGCCCGGCGCGGTCCCCAGGATGATGAGACCCGGCCCGGGGCAGAACTACCCGC
GCACCGGCTTCCCCCTGGAAGTGTCCACCCCTCTTGGCCAAGGCCGGGTCAATCAGCTTGGTGG
GGTCTTCATCAACGGGCGACCCCTGCCGAACCATATCCGGCACAAGATAGTGGAAATGGCCCAC
CACGGCATCCGGCCCTGCGTCATCTCCCGTCAGCTCCGCGTATCCCATGGCTGTGTCTCCAAGA
TTCTGTGCCGGTACCAGGAGACTGGGTCCATCCGGCCCGGGGCCATCGGTGGCAGCAAGCCCAG
ACAGGTGGCGACTCCGGATGTGGAGAAAAAGATTGAGGAGTATAAGAGGGAGAACCCCGGAATG
TTCAGCTGGGAAATCCGGGACCGGCTGCTGAAGGACGGCCACTGTGACCGCAGCACGGTGCCCT
CAGTGAGTTCGATTAGCCGAGTGCTCAGAATCAAGTTCGGGAAGAAAGAGGACGATGAGGAAGG
AGACAAAAAGGAAGAAGATGGCGAGAAGAAAGCCAAACACAGCATCGATGGCATCCTGGGCGAC
AAAGGCAACCGTCTTGATGAAGGCTCGGACGTGGAATCAGAACCCGACCTCCCACTGAAGCGTA
AGCAGCGTCGCAGTCGGACCACATTCACGGCTGAGCAGCTGGAGGAGCTGGAGAAGGCTTTCGA
GAGGACCCACTACCCGGACATCTACACCCGGGAGGAGCTGGCACAGAGGACCAAGCTCACGGAG
GCACGCGTCCAGGTCTGGTTCAGTAACCGTCGTGCGCGCTGGCGCAAGCAGGCAGGCGCTAACC
AGCTGGCCGCCTTCAACCACCTTCTGCCGGGAGGTTTCCCACCCACTGGTATGCCCACGCTGCC
ACCCTACCAGCTGCCGGACTCTGCCTATCCCACCACCACCGTCTCCCAAGATGGGGGCAGCACA
GTACACAGGCCCCAGCCCCTTCCGCCATCAACCATGCATCAGGGTGGGCTGGCTGCGGCCGCTG
CAGCAGCTGACAGCAGCTCTGCCTACGGAGCCCGCCACAGCTTCTCCAGCTACTCGGACAGCTT
CATGAACCCCGGGGCCCCCTCCAACCACATGAACCCCGTCAGCAATGGCCTGTCTCCTCAGGTG
ATGAGCATTCTCAGCAACCCGAGTGCTGTGCCTCCACAGCCCCAGGCCGACTTCTCCATCTCCC
CGCTGCATGGAGGTCTGGACTCTGCCTCCTCCATCTCAGCCAGTTGCAGCCAGCGGGCCGACTC
CATCAAGCCAGGAGACAGCTTGCCCACCTCCCAGTCTTACTGCCCACCCACCTACAGCACCACG
GGCTACAGTGTGGACCCTGTGGCTGGTTACCAGTACAGCCAGTACGGTCAAACTGCTGTTGATT
ACCTGGCCAAAAACGTGAGCCTGTCTACACAGCGCCGTATGAAGCTCGGGGAACACTCCGCGGT
GCTGGGACTTCTTCCTGTGGAGACGGGACAAGCCTACTAG

hide sequence

RefSeq Acc Id:

XM_006239263 ⟹ XP_006239325

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	157,279,641 - 157,381,188 (-)	NCBI
mRatBN7.2	5	151,996,368 - 152,098,023 (-)	NCBI
Rnor_6.0	5	158,211,001 - 158,313,510 (-)	NCBI
Rnor_5.0	5	161,944,011 - 162,045,053 (-)	NCBI

Sequence:

show sequence

AGGAGGATCGCAGCAGGGGTGAAAGGAAGAGACGCCAAGAGGTTTATCCAGCCGACTCTGGATT
CGTCTCCGGCGTGCGCAGGAATGGCGGCGCTGCCCGGCGCGGTCCCCAGGATGATGAGACCCGG
CCCGGGGCAGAACTACCCGCGCACCGGCTTCCCCCTGGAAGTGTCCACCCCTCTTGGCCAAGGC
CGGGTCAATCAGCTTGGTGGGGTCTTCATCAACGGGCGACCCCTGCCGAACCATATCCGGCACA
AGATAGTGGAAATGGCCCACCACGGCATCCGGCCCTGCGTCATCTCCCGTCAGCTCCGCGTATC
CCATGGCTGTGTCTCCAAGATTCTGTGCCGGTACCAGGAGACTGGGTCCATCCGGCCCGGGGCC
ATCGGTGGCAGCAAGCCCAGACAGGTGGCGACTCCGGATGTGGAGAAAAAGATTGAGGAGTATA
AGAGGGAGAACCCCGGAATGTTCAGCTGGGAAATCCGGGACCGGCTGCTGAAGGACGGCCACTG
TGACCGCAGCACGGTGCCCTCAGGTTTAGTGAGTTCGATTAGCCGAGTGCTCAGAATCAAGTTC
GGGAAGAAAGAGGACGATGAGGAAGGAGACAAAAAGGAAGAAGATGGCGAGAAGAAAGCCAAAC
ACAGCATCGATGGCATCCTGGGCGACAAAGGCAACCGTCTTGATGAAGGCTCGGACGTGGAATC
AGAACCCGACCTCCCACTGAAGCGTAAGCAGCGTCGCAGTCGGACCACATTCACGGCTGAGCAG
CTGGAGGAGCTGGAGAAGGCTTTCGAGAGGACCCACTACCCGGACATCTACACCCGGGAGGAGC
TGGCACAGAGGACCAAGCTCACGGAGGCACGCGTCCAGGTCTGGTTCAGTAACCGTCGTGCGCG
CTGGCGCAAGCAGGCAGGCGCTAACCAGCTGGCCGCCTTCAACCACCTTCTGCCGGGAGGTTTC
CCACCCACTGGTATGCCCACGCTGCCACCCTACCAGCTGCCGGACTCTGCCTATCCCACCACCA
CCGTCTCCCAAGATGGGGGCAGCACAGTACACAGGCCCCAGCCCCTTCCGCCATCAACCATGCA
TCAGGGTGGGCTGGCTGCGGCCGCTGCAGCAGCTGACAGCAGCTCTGCCTACGGAGCCCGCCAC
AGCTTCTCCAGCTACTCGGACAGCTTCATGAACCCCGGGGCCCCCTCCAACCACATGAACCCCG
TCAGCAATGGCCTGTCTCCTCAGGTGATGAGCATTCTCAGCAACCCGAGTGCTGTGCCTCCACA
GCCCCAGGCCGACTTCTCCATCTCCCCGCTGCATGGAGGTCTGGACTCTGCCTCCTCCATCTCA
GCCAGTTGCAGCCAGCGGGCCGACTCCATCAAGCCAGGAGACAGCTTGCCCACCTCCCAGTCTT
ACTGCCCACCCACCTACAGCACCACGGGCTACAGTGTGGACCCTGTGGCTGGTTACCAGTACAG
CCAGTACGGTCAAACTGCTGTTGATTACCTGGCCAAAAACGTGAGCCTGTCTACACAGCGCCGT
ATGAAGCTCGGGGAACACTCCGCGGTGCTGGGACTTCTTCCTGTGGAGACGGGACAAGCCTACT
AGGGTCCCTGGGGCAACTTGCCCTATCCAGTGACCCAGCTTAGCCCTTCCCAAACCCTGAGTCT
CCTCCCCTTATCCCCCTGGGGTCGCAGGAGGCCAGGGAAGAAACCCTCTCCCTTCCTACAGGCA
GCCCTCTGGAGACGGACAACCAGTGCGCCAATCACTCATGGTTAATGACCTAGATTGGCTTTCT
GCCTCCCCCTCTTTCTCCAGAGGGGTTCCTCACCATTCTGCAGTGACCTCCAGCTCAGACCCAC
CTCCTAGTGTCATGGCCTTGGTCCTGTCTCAGTGTAGAGATTGAGACTCAAGTTGAACCAAGCA
CCTAGCTATCAGAGGAAAATGGTGCCAAAGACAAGGCCCTGGAGTCTTTGACCTCTGAGTCCTG
GGTGCCCGGCCACAGGTGCAGGTGGAGCTCATGGGTGTCCTCAGTCACAGAGCTGGGAGCTCTC
TCTTGCTTGGCATCAGCACTGCAGTCCCTTTCACTGGACACTGACATGAGTCCCAAGGGCGTTC
CCAAGGGAGAAAGCAGGAAACATCTCAGCTTTACCTGGGAATCCAGAGGACTTTGGGACTGTCC
CTATGCACCCTGCTGCAAATCAGGAGACCAGGAATTCTAGCAGAGGGTAGGGTGCACAGAGCTT
GCTGGCCATGAGCTATCTCAGAATGCCTGGTCTCAGGTCCAGCAGCAGGAGGTGCAGGACTCCT
AAGTTGCAATCTGACAGAGGCTTGCCCACCGTACCAGGTCTAGGCAGCCCACAGAACCTGTCAG
TCTCCTCAACTGGTAGGAGAAGAGAAGGTCTTGAGGTGACAGGAGGCAGGAGGTGGGCTCAGAC
AGTCTGAGTTGAGCTTTCAAGTCTGCACCCCTAGAGTTCTGCACACCATCTTGCTGGCAGCTGG
GAACCTGCCTCATGCATGCTGGTCCCCTGAAAAGGGGGCCTCCATCTTCCAGCATGTAAGGCTC
TTGATGCCACTGGATGCAGAGAGCCTTCTCGGACCAGACAAAATTATTGATCCACACCAGAGAA
GATGCTCCCCATCTCCTTGGCATCGCCTTGTCTCTGTCCTTTTCGGAGTAGCATTTTTCAATGT
TGGTTGCTCAGTCAGGAGGCTTCTGTCGCCTCACGAGGCATAGTGCGCCTTGGGCCACCACCCA
CCCCCTGGCAGAGGAAGATGCCAGAAGTCCCAGCAATGAGGACAAGGCGCCTTCCTTAAACACT
CCAGAGTCTTCCTTGCACTCCCGCCCTCTCTTAGAGCTGGGTCTTTTGGGGTAAATGGATTGCT
GAGGCCCCTGATTCTCTCCTCTGTGGAGGTCTTTATCACCATCTATTTATCAAGATTACATCCA
CTTTGACCTTCTCCCTCGCTATAACCTCCACTTGGGCCATCCTCATCCAGTGCTAGGATCCCAC
AGCACCAAATCCAGGATCCCTGGGCCTGATTGCTTGTTGCCACCATGCACACGAGACCACCTGC
TGACGCAGTCCATGCCTCCTGGCCTCAGCCATCGAGACATTCCTAGAGAGATGGGCTATGGGCT
CAAAAGCCCTGACTTCCTTTTGACTGGGGACCTGAACCGGCAAGATGCTGGGACACTCGTCTAC
ATGAACATGTGACCAATGTATCTCATCTCTAGAGCCATCATCTGAAGCCTATTCCAAGCTGTGA
CTGGGATGGCTTGTATCTGTGGTTTAGAGAAGCCTATTCGTAACTGGGAGGAAACTGGCTCTCT
GGCATCCTGGAGCACCAGACATATAGAGCTTATCCGTTCAGTCCAGGCTTCAAGGAAGACTTTT
GGGCTCTTCAAGGTCTGGACAAGAGGGAAGCCATGTTGCCCCCCTTGGAAACCCAGATTCTCCT
TTTGAAGTTCTTATAGCTGCAAGCACCTCTTTCAGAAGACCAAATGCATCTTCCTCCACATTCC
TTGCCCCTTGGAGGCCTGGCTCTGGATACACCTGAGTCTCCTTTCACCAAGTATGCTTCAGGAC
CAGGGACCTCAAGCAGGTGACATCCACAGGGCCCAGTCTCAGCCCCAGGAGCAACATTCCAATG
CTTGGACCAATCACAATGATCTGCCCACAAGGGTAACCGCAACCAGAGACCTGCTTGCGAGAAA
ATGAAATGACTTCTCATTCCATGCAACGTCTCTGAATGCTCCCCCAAGCCGCCATCTTGGTATA
AAATGGGACTTGTGTTCTGAGGGGCCCTTGACCCCAACAGATTTCCCCAACCGTCTCATGCTTT
TGTGAATCTGTCCACCTTGATCTGTAAAACTCAGCCTTGTTGGGGCAACTTGCAACTGCACCAT
TGAGGTGATGAAGGTTAGGCGAGAGGTACCAGGCCTCTCCCCTGTCCCTCTGGGGTTGAGCACA
GCCTACAAAGGCCGATTTCCAGTGGCCAGGCTGGATCAGAAACAGCCCCCACCCCAACTCCTGT
AAATAGAATCAATAGTAAGATAAGAGGGGTGCCCTCCATGTCACCTCAAGTAGCTACTGGTTCT
TCTGTGGGGGCCCCTCTGAACTTATTGTATGGTAGTTGATGTGACGTCGTGCCGTTTGTTTATA
GAACATTGGCTTTTTATATATAAATCTATATACTTAAAAACAAAACAAAAACAAAAAAATGGAA
AGAAACCCCCACAGTGCGTGTCGTGCTAGTGCCAGGGATCATCTGTAGGGATCTCACTGTGTGT
TTGGGTTACGAATTCCAGCCTCTCTTTGATTCCTTCTTCTTTTTCCCTTTGTCATTTCCCTACT
CCCAATTTGGCTTTTCTCTCTTGCTATGAAATTGAAAGAGAAGGCTTCAAGAGCCAAGCATCTA
CTCCTTTATACTCGTTTTAACTTTGCCCTTCTTTTAGGGGACCAGGAAGGAACGAGCACAGGAA
ACAGACATTGGGAAGCAAGAGGGTAGGAGAGAAAAGTGAGGGGAGGAGCTGGCCGGGGAGACAG
GAGAGCAGGGCAGTTTCACAGCCAGATGATGGGTGCAGCCCAGGACGGAGGCTGGATTGGTATC
TGCACCAGAGTCGGGCATTGTTTTGCATGGAAATCGTAGAAGGTTCTAAGACGTGGAACTAAGG
GACTCCACAGTTGCCAACTAAAAAGACTGTGCAAGTCCTCTATGAGACTCATTCTTCCCAGGCT
CCTGGAAATGTCTCTCCCTGCTGGATGCTTCTCTAGGCTACACAGCATCCTCACCTTCTACAGA
AGACGCACCAAGCCAAGACCAAATGGGGGTATGTGGGCTGCCGCGTTGAAATGCTTCGAGATAC
CTGTGCGTTTAATGTTTCCTCTGTCTACACGGACCTGGGCAGCCCCCAGCTGGGAGAATACCAC
ACTGTGCTGGAGAACATTCCTTCTACCTAGTGACTGCAACATTGTTGCTTCAGTGTTTGGCTCA
GCCATTTCTCTCCAGGCAAAGTGAGTGTGTGTGCATGAGGGGTGTGAGTGGAATGTGCGTGTGT
GGGCGGGTGTCTAAATATAACCGCACCATAATTTATTCAGCTATATGGAGTAGTAGACTAGAAA
GACAAACTGGTATTTGCTTTAACTACCTGCTGCTTGTAAGCGCTGCCTCTGTAACTCAGGCGTA
ACTGTTACACATTAAAAGAAATTAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039110635 ⟹ XP_038966563

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	157,279,641 - 157,381,179 (-)	NCBI
mRatBN7.2	5	151,996,368 - 152,098,023 (-)	NCBI

RefSeq Acc Id:

XM_063288293 ⟹ XP_063144363

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	157,279,641 - 157,381,179 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178913	(Get FASTA)	NCBI Sequence Viewer
	XP_006239325	(Get FASTA)	NCBI Sequence Viewer
	XP_038966563	(Get FASTA)	NCBI Sequence Viewer
	XP_063144363	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL80932	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000025488
	ENSRNOP00000025488.5

RefSeq Acc Id:

NP_001178913 ⟸ NM_001191984

- UniProtKB:

A6ITN1 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MAALPGAVPRMMRPGPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAH
HGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGM
FSWEIRDRLLKDGHCDRSTVPSVSSISRVLRIKFGKKEDDEEGDKKEEDGEKKAKHSIDGILGD
KGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKLTE
ARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSAYPTTTVSQDGGST
VHRPQPLPPSTMHQGGLAAAAAAADSSSAYGARHSFSSYSDSFMNPGAPSNHMNPVSNGLSPQV
MSILSNPSAVPPQPQADFSISPLHGGLDSASSISASCSQRADSIKPGDSLPTSQSYCPPTYSTT
GYSVDPVAGYQYSQYGQTAVDYLAKNVSLSTQRRMKLGEHSAVLGLLPVETGQAY

hide sequence

RefSeq Acc Id:	XP_006239325 ⟸ XM_006239263
- Peptide Label:	isoform X1
- UniProtKB:	D3ZRA8 (UniProtKB/TrEMBL), A6ITN1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAALPGAVPRMMRPGPGQNYPRTGFPLEVSTPLGQGRVNQLGGVFINGRPLPNHIRHKIVEMAH HGIRPCVISRQLRVSHGCVSKILCRYQETGSIRPGAIGGSKPRQVATPDVEKKIEEYKRENPGM FSWEIRDRLLKDGHCDRSTVPSGLVSSISRVLRIKFGKKEDDEEGDKKEEDGEKKAKHSIDGIL GDKGNRLDEGSDVESEPDLPLKRKQRRSRTTFTAEQLEELEKAFERTHYPDIYTREELAQRTKL TEARVQVWFSNRRARWRKQAGANQLAAFNHLLPGGFPPTGMPTLPPYQLPDSAYPTTTVSQDGG STVHRPQPLPPSTMHQGGLAAAAAAADSSSAYGARHSFSSYSDSFMNPGAPSNHMNPVSNGLSP QVMSILSNPSAVPPQPQADFSISPLHGGLDSASSISASCSQRADSIKPGDSLPTSQSYCPPTYS TTGYSVDPVAGYQYSQYGQTAVDYLAKNVSLSTQRRMKLGEHSAVLGLLPVETGQAY hide sequence

Ensembl Acc Id:

ENSRNOP00000025488 ⟸ ENSRNOT00000025488

RefSeq Acc Id:	XP_038966563 ⟸ XM_039110635
- Peptide Label:	isoform X2
- UniProtKB:	A6ITN1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063144363 ⟸ XM_063288293
- Peptide Label:	isoform X3
- UniProtKB:	A6ITN1 (UniProtKB/TrEMBL)

Protein Domains

Homeobox OAR Paired

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZRA8-F1-model_v2	AlphaFold	D3ZRA8	1-503	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564360	AgrOrtholog
BioCyc Gene	G2FUF-39406	BioCyc
Ensembl Genes	ENSRNOG00000018739	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000025488	ENTREZGENE
	ENSRNOT00000025488.8	UniProtKB/TrEMBL
Gene3D-CATH	1.10.10.10	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
InterPro	Homeobox	UniProtKB/TrEMBL
	Homeobox_CS	UniProtKB/TrEMBL
	Homeodomain-like	UniProtKB/TrEMBL
	OAR_dom	UniProtKB/TrEMBL
	Paired_box_N	UniProtKB/TrEMBL
	PAIRED_DNA_bd_dom	UniProtKB/TrEMBL
	Pax7	UniProtKB/TrEMBL
	PAX_fam	UniProtKB/TrEMBL
	WH-like_DNA-bd_sf	UniProtKB/TrEMBL
NCBI Gene	500574	ENTREZGENE
PANTHER	PAIRED BOX PROTEIN PAX-7	UniProtKB/TrEMBL
	PTHR45636	UniProtKB/TrEMBL
Pfam	Homeobox	UniProtKB/TrEMBL
	PAX	UniProtKB/TrEMBL
	Pax7	UniProtKB/TrEMBL
PhenoGen	Pax7	PhenoGen
PRINTS	PAIREDBOX	UniProtKB/TrEMBL
PROSITE	HOMEOBOX_1	UniProtKB/TrEMBL
	HOMEOBOX_2	UniProtKB/TrEMBL
	OAR	UniProtKB/TrEMBL
	PAIRED_1	UniProtKB/TrEMBL
	PAIRED_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000018739	RatGTEx
SMART	HOX	UniProtKB/TrEMBL
	PAX	UniProtKB/TrEMBL
Superfamily-SCOP	Homeodomain_like	UniProtKB/TrEMBL
UniProt	A6ITN1	ENTREZGENE, UniProtKB/TrEMBL
	D3ZRA8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-10-30	Pax7	paired box 7	Pax7	paired box gene 7	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Pax7	paired box gene 7	RGD1564360_predicted	similar to paired box gene 7 isoform 1 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564360_predicted	similar to paired box gene 7 isoform 1 (predicted)	LOC500574	similar to paired box gene 7 isoform 1	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500574	similar to paired box gene 7 isoform 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD

Imported Disease Annotations - OMIM

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