Nipal2 (NIPA-like domain containing 2) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Nipal2 (NIPA-like domain containing 2) Rattus norvegicus
Analyze
Symbol: Nipal2
Name: NIPA-like domain containing 2
RGD ID: 1564315
Description: Predicted to enable magnesium ion transmembrane transporter activity. Predicted to be involved in magnesium ion transport. Predicted to be active in membrane. Orthologous to human NIPAL2 (NIPA like domain containing 2); INTERACTS WITH 1-naphthyl isothiocyanate; 2,2',4,4',5,5'-hexachlorobiphenyl; 2,2',4,4'-Tetrabromodiphenyl ether.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: LOC362899; NIPA-like protein 2; Npal2; RGD1564315; similar to RIKEN cDNA 9330161F08
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8767,659,628 - 67,771,105 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl767,659,628 - 67,769,959 (-)EnsemblGRCr8
mRatBN7.2765,774,477 - 65,884,807 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl765,774,477 - 65,884,807 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx767,663,694 - 67,774,012 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0769,865,370 - 69,975,691 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0769,730,735 - 69,849,396 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0773,339,706 - 73,450,262 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl773,339,706 - 73,450,262 (-)Ensemblrn6Rnor6.0
Rnor_5.0773,513,633 - 73,624,863 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4770,021,792 - 70,135,156 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera762,875,294 - 62,985,187 (-)NCBICelera
Cytogenetic Map7q22NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,1-dichloroethene  (ISO)
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,2',4,4',5,5'-hexachlorobiphenyl  (EXP)
2,2',4,4'-Tetrabromodiphenyl ether  (EXP)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
2-hydroxypropanoic acid  (ISO)
3,3',4,4',5-pentachlorobiphenyl  (EXP)
4,4'-diaminodiphenylmethane  (EXP)
4-hydroxyphenyl retinamide  (ISO)
5-methoxy-2-\{[(4-methoxy-3,5-dimethylpyridin-2-yl)methyl]sulfinyl\}-1H-benzimidazole  (EXP)
6-propyl-2-thiouracil  (EXP)
acetamide  (EXP)
acrylamide  (EXP)
aflatoxin B1  (EXP)
amiodarone  (EXP)
amphetamine  (EXP)
aristolochic acid A  (ISO)
belinostat  (ISO)
benzbromarone  (EXP)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
Benzo[k]fluoranthene  (ISO)
bisphenol A  (EXP,ISO)
calcitriol  (ISO)
carbon nanotube  (ISO)
cisplatin  (ISO)
clofibrate  (EXP)
dibutyl phthalate  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
furan  (EXP)
gentamycin  (EXP)
indole-3-methanol  (EXP)
L-ethionine  (EXP)
mercury dibromide  (ISO)
methoxychlor  (EXP)
Moniliformin  (ISO)
N,N-diethyl-m-toluamide  (EXP)
N-nitrosodiethylamine  (EXP)
omeprazole  (EXP)
orphenadrine  (EXP)
oxaliplatin  (EXP)
panobinostat  (ISO)
paracetamol  (EXP,ISO)
perfluorooctanoic acid  (EXP)
permethrin  (EXP)
phenylmercury acetate  (ISO)
pirinixic acid  (EXP,ISO)
potassium dichromate  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
tributylstannane  (EXP)
trichloroethene  (EXP)
trichostatin A  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
membrane  (IBA,IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Nipal2
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8767,659,628 - 67,771,105 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl767,659,628 - 67,769,959 (-)EnsemblGRCr8
mRatBN7.2765,774,477 - 65,884,807 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl765,774,477 - 65,884,807 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx767,663,694 - 67,774,012 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0769,865,370 - 69,975,691 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0769,730,735 - 69,849,396 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0773,339,706 - 73,450,262 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl773,339,706 - 73,450,262 (-)Ensemblrn6Rnor6.0
Rnor_5.0773,513,633 - 73,624,863 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4770,021,792 - 70,135,156 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera762,875,294 - 62,985,187 (-)NCBICelera
Cytogenetic Map7q22NCBI
NIPAL2
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38898,189,826 - 98,294,235 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl898,189,826 - 98,294,393 (-)Ensemblhg38GRCh38
GRCh37899,202,054 - 99,306,463 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36899,273,563 - 99,375,797 (-)NCBIBuild 36Build 36hg18NCBI36
Celera895,390,258 - 95,492,501 (-)NCBICelera
Cytogenetic Map8q22.2NCBI
HuRef894,407,842 - 94,509,957 (-)NCBIHuRef
CHM1_1899,245,097 - 99,347,324 (-)NCBICHM1_1
T2T-CHM13v2.0899,315,312 - 99,419,709 (-)NCBIT2T-CHM13v2.0
Nipal2
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391534,572,942 - 34,679,739 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1534,572,945 - 34,679,358 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381534,572,796 - 34,679,207 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1534,572,799 - 34,679,212 (-)Ensemblmm10GRCm38
MGSCv371534,502,554 - 34,608,461 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361534,517,388 - 34,623,295 (-)NCBIMGSCv36mm8
Celera1535,199,760 - 35,313,104 (-)NCBICelera
Cytogenetic Map15B3.1NCBI
cM Map1514.34NCBI
Nipal2
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541713,885,766 - 13,939,796 (-)Ensembl
ChiLan1.0NW_00495541713,887,251 - 13,941,851 (-)NCBIChiLan1.0ChiLan1.0
NIPAL2
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v27115,531,147 - 115,643,384 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1891,072,583 - 91,184,641 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0894,826,325 - 94,938,586 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1897,010,732 - 97,118,750 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl897,013,882 - 97,118,281 (-)EnsemblpanPan2panpan1.1
NIPAL2
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.113427,216 - 493,861 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl13428,752 - 493,817 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha13420,704 - 497,511 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.013576,081 - 653,048 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl13576,089 - 652,374 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.113419,280 - 496,101 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.013527,352 - 604,171 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.013533,454 - 610,316 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Nipal2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440530337,050,208 - 37,219,765 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493647044,588,168 - 44,646,651 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493647044,588,211 - 44,645,860 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
NIPAL2
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl438,491,285 - 38,574,255 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1438,491,029 - 38,576,606 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2441,534,507 - 41,632,321 (+)NCBISscrofa10.2Sscrofa10.2susScr3
NIPAL2
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1893,108,371 - 93,211,595 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl893,109,205 - 93,210,445 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603947,528,647 - 47,630,454 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Nipal2
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247635,332,593 - 5,433,032 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247635,334,722 - 5,433,062 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Nipal2
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11208,256,305 - 208,348,612 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Nipal2
815 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:200
Count of miRNA genes:140
Interacting mature miRNAs:161
Transcripts:ENSRNOT00000006943
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
10053722Scort27Serum corticosterone level QTL 272.410.0083blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)74511390390113903Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1357336Gluco6Glucose level QTL 63.4blood glucose amount (VT:0000188)serum glucose level (CMO:0000543)75170064396700643Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
1298525Cm1Cardiac mass QTL 12.7heart mass (VT:0007028)heart wet weight (CMO:0000069)756625161101625161Rat
631513Scl7Serum cholesterol level QTL 74.1blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)73984590284845902Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
1559283Emca4Estrogen-induced mammary cancer QTL 43.7mammary gland integrity trait (VT:0010552)percentage of study population developing mammary tumors during a period of time (CMO:0000948)763889858108889858Rat
1300151Bp181Blood pressure QTL 1813.36arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)755498584105834451Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
738030Anxrr8Anxiety related response QTL 84.1exploratory behavior trait (VT:0010471)number of entries into a discrete space in an experimental apparatus (CMO:0000960)74847504993475049Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1298528Bp169Blood pressure QTL 1690.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)762963207107963207Rat
1576303Ept7Estrogen-induced pituitary tumorigenesis QTL 73.7pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)763889858108889858Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
2303582Gluco53Glucose level QTL 533blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)74860308793603087Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat

Markers in Region
RH128060  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2765,774,519 - 65,774,722 (+)MAPPERmRatBN7.2
Rnor_6.0773,339,749 - 73,339,951NCBIRnor6.0
Rnor_5.0773,513,676 - 73,513,878UniSTSRnor5.0
RGSC_v3.4770,021,835 - 70,022,037UniSTSRGSC3.4
Celera762,875,337 - 62,875,539UniSTS
Cytogenetic Map7q22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 90 59 6 354 190 11 140 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000006943   ⟹   ENSRNOP00000006943
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl767,659,628 - 67,769,959 (-)Ensembl
mRatBN7.2 Ensembl765,774,477 - 65,884,807 (-)Ensembl
Rnor_6.0 Ensembl773,339,706 - 73,450,262 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000113707   ⟹   ENSRNOP00000090272
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl767,665,503 - 67,769,959 (-)Ensembl
mRatBN7.2 Ensembl765,774,477 - 65,884,807 (-)Ensembl
RefSeq Acc Id: NM_001130559   ⟹   NP_001124031
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8767,659,628 - 67,769,959 (-)NCBI
mRatBN7.2765,774,477 - 65,884,807 (-)NCBI
Rnor_6.0773,339,706 - 73,450,262 (-)NCBI
Rnor_5.0773,513,633 - 73,624,863 (-)NCBI
RGSC_v3.4770,021,792 - 70,135,156 (-)RGD
Celera762,875,294 - 62,985,187 (-)RGD
Sequence:
RefSeq Acc Id: XM_006241544   ⟹   XP_006241606
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8767,659,635 - 67,769,661 (-)NCBI
mRatBN7.2765,774,480 - 65,884,522 (-)NCBI
Rnor_6.0773,339,709 - 73,450,096 (-)NCBI
Rnor_5.0773,513,633 - 73,624,863 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039079513   ⟹   XP_038935441
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8767,659,635 - 67,679,150 (-)NCBI
mRatBN7.2765,774,480 - 65,794,727 (-)NCBI
RefSeq Acc Id: XM_063263832   ⟹   XP_063119902
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8767,659,635 - 67,771,105 (-)NCBI
RefSeq Acc Id: NP_001124031   ⟸   NM_001130559
- UniProtKB: D3ZKE2 (UniProtKB/TrEMBL),   A6HR07 (UniProtKB/TrEMBL),   A0A8I6AE26 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241606   ⟸   XM_006241544
- Peptide Label: isoform X2
- Sequence:
Ensembl Acc Id: ENSRNOP00000006943   ⟸   ENSRNOT00000006943
RefSeq Acc Id: XP_038935441   ⟸   XM_039079513
- Peptide Label: isoform X3
Ensembl Acc Id: ENSRNOP00000090272   ⟸   ENSRNOT00000113707
RefSeq Acc Id: XP_063119902   ⟸   XM_063263832
- Peptide Label: isoform X1
- UniProtKB: A6HR07 (UniProtKB/TrEMBL),   D3ZKE2 (UniProtKB/TrEMBL),   A0A8I6AE26 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZKE2-F1-model_v2 AlphaFold D3ZKE2 1-383 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564315 AgrOrtholog
BioCyc Gene G2FUF-33675 BioCyc
Ensembl Genes ENSRNOG00000005190 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000006943 ENTREZGENE
  ENSRNOT00000006943.7 UniProtKB/TrEMBL
  ENSRNOT00000113707.2 UniProtKB/TrEMBL
InterPro DUF803 UniProtKB/TrEMBL
KEGG Report rno:362899 UniProtKB/TrEMBL
NCBI Gene 362899 ENTREZGENE
PANTHER DUF803 UniProtKB/TrEMBL
  NIPA-LIKE PROTEIN 2 UniProtKB/TrEMBL
Pfam DUF803 UniProtKB/TrEMBL
PhenoGen Nipal2 PhenoGen
RatGTEx ENSRNOG00000005190 RatGTEx
Superfamily-SCOP Multidrug resistance efflux transporter EmrE UniProtKB/TrEMBL
UniProt A0A8I6AE26 ENTREZGENE, UniProtKB/TrEMBL
  A6HR07 ENTREZGENE, UniProtKB/TrEMBL
  D3ZKE2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-04-23 Nipal2  NIPA-like domain containing 2  Npal2  NIPA-like domain containing 2  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-07 Npal2  NIPA-like domain containing 2  RGD1564315_predicted  similar to RIKEN cDNA 9330161F08 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564315_predicted  similar to RIKEN cDNA 9330161F08 (predicted)  LOC362899  similar to RIKEN cDNA 9330161F08  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362899  similar to RIKEN cDNA 9330161F08      Symbol and Name status set to provisional 70820 PROVISIONAL