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Gene: Cfap96 (cilia and flagella associated protein 96) Rattus norvegicus

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Symbol:

Cfap96

Name:

cilia and flagella associated protein 96

RGD ID:

1564308

Description:

Predicted to be located in 9+0 non-motile cilium. Predicted to be active in centrosome and cytoplasmic microtubule. Orthologous to human CFAP96 (cilia and flagella associated protein 96); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

C16h4orf47; cilia-and flagella-associated protein 96; LOC100911106; LOC502086; RGD1564308; similar to human chromosome 4 open reading frame 47; similar to LOC495042 protein; uncharacterized protein LOC502086; UPF0602 protein C4orf47 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	53,023,623 - 53,048,176 (+)	NCBI		GRCr8
mRatBN7.2	16	46,291,075 - 46,315,616 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	46,291,311 - 46,315,625 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	16	49,485,022 - 49,509,756 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	49,485,256 - 49,509,767 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	49,211,727 - 49,236,305 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	49,573,429 - 49,596,596 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	44,289,273 - 44,313,879 (+)	NCBI		Celera
Cytogenetic Map	16	q11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cfap96	Rat	autistic disorder		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: Autism	ClinVar	PMID:21681106\|PMID:30208311
Cfap96	Rat	Beukes hip dysplasia		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: Hip dysplasia, Beukes type \| ClinVar Annotator: match by term: more ...	ClinVar	PMID:25741868\|PMID:28492532\|PMID:33473208
Cfap96	Rat	developmental and epileptic encephalopathy 1		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: X-Linked Infantile Spasm Syndrome	ClinVar	PMID:25741868\|PMID:28492532\|PMID:33473208
Cfap96	Rat	developmental and epileptic encephalopathy 106		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: Developmental and epileptic encephalopathy 106	ClinVar	PMID:25741868\|PMID:28492532\|PMID:33473208
Cfap96	Rat	dilated cardiomyopathy		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: Primary dilated cardiomyopathy	ClinVar	PMID:28492532
Cfap96	Rat	epilepsy		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: Seizures	ClinVar	PMID:25741868\|PMID:28492532\|PMID:33473208
Cfap96	Rat	focal epilepsy		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: Focal-onset seizure	ClinVar	PMID:25741868\|PMID:28492532\|PMID:33473208
Cfap96	Rat	generalized epilepsy		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: Epileptic encephalopathy	ClinVar	PMID:25741868\|PMID:28492532\|PMID:33473208
Cfap96	Rat	Herpes Simplex Encephalitis 1		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: Herpes simplex encephalitis, susceptibility to, 1	ClinVar	PMID:15042513\|PMID:25118264\|PMID:25629076\|PMID:28492532
Cfap96	Rat	intellectual disability		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: intellectual disabilities	ClinVar	PMID:25741868\|PMID:28492532\|PMID:33473208
Cfap96	Rat	microcephaly		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: Microcephaly	ClinVar	PMID:25741868\|PMID:28492532\|PMID:33473208
Cfap96	Rat	Nervous System Malformations		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: Abnormality of the nervous system	ClinVar	PMID:25741868\|PMID:28492532\|PMID:33473208
Cfap96	Rat	olivopontocerebellar atrophy		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: Olivopontocerebellar hypoplasia	ClinVar	PMID:25741868\|PMID:28492532\|PMID:33473208
Cfap96	Rat	SPONDYLOEPIMETAPHYSEAL DYSPLASIA, DI ROCCO TYPE		ISO	RGD:2298813	8554872	ClinVar Annotator: match by term: Spondyloepimetaphyseal dysplasia, di rocco type	ClinVar	PMID:25741868

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cfap96	Rat	(-)-demecolcine	increases expression	ISO	RGD:2298813	6480464	Demecolcine results in increased expression of CFAP96 mRNA	CTD	PMID:23649840
Cfap96	Rat	17beta-estradiol	decreases expression	ISO	RGD:2298813	6480464	Estradiol results in decreased expression of CFAP96 mRNA	CTD	PMID:31614463
Cfap96	Rat	2,3,7,8-tetrachlorodibenzodioxine	increases expression	EXP		6480464	Tetrachlorodibenzodioxin results in increased expression of CFAP96 mRNA	CTD	PMID:33387578
Cfap96	Rat	4-hydroxyphenyl retinamide	increases expression	ISO	RGD:1620001	6480464	Fenretinide results in increased expression of CFAP96 mRNA	CTD	PMID:28973697
Cfap96	Rat	6-propyl-2-thiouracil	increases expression	EXP		6480464	Propylthiouracil results in increased expression of CFAP96 mRNA	CTD	PMID:24780913
Cfap96	Rat	actinomycin D	multiple interactions	ISO	RGD:2298813	6480464	[Dactinomycin co-treated with nutlin 3] results in increased expression of C4ORF47 mRNA	CTD	PMID:38460933
Cfap96	Rat	aflatoxin B1	increases expression	ISO	RGD:2298813	6480464	Aflatoxin B1 results in increased expression of CFAP96 mRNA	CTD	PMID:32234424
Cfap96	Rat	bisphenol A	decreases expression	EXP		6480464	bisphenol A results in decreased expression of CFAP96 mRNA	CTD	PMID:25181051
Cfap96	Rat	bisphenol F	decreases expression	ISO	RGD:1620001	6480464	bisphenol F results in decreased expression of CFAP96 mRNA	CTD	PMID:38685157
Cfap96	Rat	camptothecin	increases expression	ISO	RGD:2298813	6480464	Camptothecin results in increased expression of C4ORF47 mRNA	CTD	PMID:38460933
Cfap96	Rat	carbamazepine	affects expression	ISO	RGD:2298813	6480464	Carbamazepine affects the expression of CFAP96 mRNA	CTD	PMID:25979313
Cfap96	Rat	cisplatin	multiple interactions	ISO	RGD:2298813	6480464	[Cisplatin co-treated with jinfukang] results in increased expression of CFAP96 mRNA	CTD	PMID:27392435
Cfap96	Rat	cisplatin	increases expression	ISO	RGD:2298813	6480464	Cisplatin results in increased expression of CFAP96 mRNA	CTD	PMID:27392435
Cfap96	Rat	Cuprizon	increases expression	EXP		6480464	Cuprizone results in increased expression of CFAP96 mRNA	CTD	PMID:26577399
Cfap96	Rat	dioxygen	increases expression	ISO	RGD:2298813	6480464	Oxygen deficiency results in increased expression of CFAP96 mRNA	CTD	PMID:24236059\|PMID:26516004
Cfap96	Rat	dorsomorphin	multiple interactions	ISO	RGD:2298813	6480464	[NOG protein co-treated with mercuric bromide co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Cfap96	Rat	endosulfan	increases expression	EXP		6480464	Endosulfan results in increased expression of CFAP96 mRNA	CTD	PMID:29391264
Cfap96	Rat	ethyl methanesulfonate	increases expression	ISO	RGD:2298813	6480464	Ethyl Methanesulfonate results in increased expression of CFAP96 mRNA	CTD	PMID:23649840
Cfap96	Rat	formaldehyde	increases expression	ISO	RGD:2298813	6480464	Formaldehyde results in increased expression of CFAP96 mRNA	CTD	PMID:23649840
Cfap96	Rat	lipopolysaccharide	multiple interactions	ISO	RGD:2298813	6480464	[S-(1,2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in increased expression of CFAP96 mRNA	CTD	PMID:35811015
Cfap96	Rat	mercury dibromide	decreases expression	ISO	RGD:2298813	6480464	mercuric bromide results in decreased expression of CFAP96 mRNA	CTD	PMID:26272509
Cfap96	Rat	mercury dibromide	multiple interactions	ISO	RGD:2298813	6480464	[NOG protein co-treated with mercuric bromide co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Cfap96	Rat	methyl methanesulfonate	increases expression	ISO	RGD:2298813	6480464	Methyl Methanesulfonate results in increased expression of CFAP96 mRNA	CTD	PMID:23649840
Cfap96	Rat	methylmercury chloride	decreases expression	ISO	RGD:2298813	6480464	methylmercuric chloride results in decreased expression of CFAP96 mRNA	CTD	PMID:23179753\|PMID:28001369
Cfap96	Rat	methylmercury chloride	increases expression	ISO	RGD:2298813	6480464	methylmercuric chloride results in increased expression of CFAP96 mRNA	CTD	PMID:28001369
Cfap96	Rat	Nutlin-3	multiple interactions	ISO	RGD:2298813	6480464	[Dactinomycin co-treated with nutlin 3] results in increased expression of C4ORF47 mRNA	CTD	PMID:38460933
Cfap96	Rat	okadaic acid	increases expression	ISO	RGD:2298813	6480464	Okadaic Acid results in increased expression of CFAP96 mRNA	CTD	PMID:38832940
Cfap96	Rat	p-chloromercuribenzoic acid	decreases expression	ISO	RGD:2298813	6480464	p-Chloromercuribenzoic Acid results in decreased expression of CFAP96 mRNA	CTD	PMID:26272509
Cfap96	Rat	p-chloromercuribenzoic acid	multiple interactions	ISO	RGD:2298813	6480464	[NOG protein co-treated with p-Chloromercuribenzoic Acid co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Cfap96	Rat	paracetamol	increases expression	EXP		6480464	Acetaminophen results in increased expression of CFAP96 mRNA	CTD	PMID:33387578
Cfap96	Rat	phenylmercury acetate	decreases expression	ISO	RGD:2298813	6480464	Phenylmercuric Acetate results in decreased expression of CFAP96 mRNA	CTD	PMID:26272509
Cfap96	Rat	phenylmercury acetate	multiple interactions	ISO	RGD:2298813	6480464	[NOG protein co-treated with Phenylmercuric Acetate co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Cfap96	Rat	pravastatin	increases expression	EXP		6480464	Pravastatin results in increased expression of CFAP96 mRNA	CTD	PMID:27225895
Cfap96	Rat	S-(1,2-dichlorovinyl)-L-cysteine	multiple interactions	ISO	RGD:2298813	6480464	[S-(1,2-dichlorovinyl)cysteine co-treated with Lipopolysaccharides] results in increased expression of CFAP96 mRNA	CTD	PMID:35811015
Cfap96	Rat	SB 431542	multiple interactions	ISO	RGD:2298813	6480464	[NOG protein co-treated with mercuric bromide co-treated with dorsomorphin co-treated with 4-(5-benzo(1,3)dioxol-5-yl-4-pyridin-2-yl-1H-imidazol-2-yl)benzamide] results in decreased more ...	CTD	PMID:27188386
Cfap96	Rat	sotorasib	multiple interactions	ISO	RGD:2298813	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of CFAP96 mRNA	CTD	PMID:36139627
Cfap96	Rat	T-2 toxin	increases expression	ISO	RGD:2298813	6480464	T-2 Toxin results in increased expression of CFAP96 mRNA	CTD	PMID:31863870
Cfap96	Rat	thimerosal	decreases expression	ISO	RGD:2298813	6480464	Thimerosal results in decreased expression of CFAP96 mRNA	CTD	PMID:27188386
Cfap96	Rat	trametinib	multiple interactions	ISO	RGD:2298813	6480464	[sotorasib co-treated with trametinib co-treated with NVP-BKM120] results in decreased expression of CFAP96 mRNA	CTD	PMID:36139627
Cfap96	Rat	trichloroethene	increases expression	EXP		6480464	Trichloroethylene results in increased expression of CFAP96 mRNA	CTD	PMID:33387578
Cfap96	Rat	trichostatin A	increases expression	ISO	RGD:2298813	6480464	trichostatin A results in increased expression of CFAP96 mRNA	CTD	PMID:24935251
Cfap96	Rat	valproic acid	decreases expression	ISO	RGD:2298813	6480464	Valproic Acid results in decreased expression of CFAP96 mRNA	CTD	PMID:23179753
Cfap96	Rat	valproic acid	increases expression	ISO	RGD:2298813	6480464	Valproic Acid results in increased expression of CFAP96 mRNA	CTD	PMID:24383497\|PMID:28001369
Cfap96	Rat	vorinostat	decreases expression	ISO	RGD:2298813	6480464	Vorinostat results in decreased expression of CFAP96 mRNA	CTD	PMID:27188386
Cfap96	Rat	zinc atom	multiple interactions	ISO	RGD:2298813	6480464	[PCI 5002 co-treated with Zinc] results in increased expression of CFAP96 mRNA	CTD	PMID:18593933
Cfap96	Rat	zinc(0)	multiple interactions	ISO	RGD:2298813	6480464	[PCI 5002 co-treated with Zinc] results in increased expression of CFAP96 mRNA	CTD	PMID:18593933

Cellular Component

Only show annotations with direct experimental evidence (0 objects hidden)

Object Symbol	Species	Term	Qualifier	Evidence	With	Reference	Notes	Source	Original Reference(s)
Cfap96	Rat	9+0 non-motile cilium	located_in	ISO	RGD:2298813	1624291	PMID:29257953	RGD	PMID:29257953
Cfap96	Rat	9+0 non-motile cilium	located_in	IEA	UniProtKB:A7E2U8\|ensembl:ENSP00000368127	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap96	Rat	centrosome	located_in	ISO	RGD:2298813	1624291	PMID:25074808	RGD	PMID:25074808
Cfap96	Rat	centrosome	located_in	IEA	UniProtKB:A7E2U8\|ensembl:ENSP00000368127	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap96	Rat	centrosome	located_in	IEA	UniProtKB-SubCell:SL-0048	1600115	GO_REF:0000044	UniProt	GO_REF:0000044
Cfap96	Rat	centrosome	is_active_in	IBA	PANTHER:PTN001259377\|UniProtKB:A7E2U8	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Cfap96	Rat	cytoplasm	located_in	IEA	UniProtKB-KW:KW-0963	1600115	GO_REF:0000043	UniProt	GO_REF:0000043
Cfap96	Rat	cytoplasmic microtubule	located_in	ISO	RGD:2298813	1624291	PMID:29257953	RGD	PMID:29257953
Cfap96	Rat	cytoplasmic microtubule	located_in	IEA	UniProtKB:A7E2U8\|ensembl:ENSP00000368127	1600115	GO_REF:0000107	Ensembl	GO_REF:0000107
Cfap96	Rat	cytoplasmic microtubule	is_active_in	IBA	PANTHER:PTN001259375\|UniProtKB:A7E2U8	1600115	GO_REF:0000033	GO_Central	GO_REF:0000033
Cfap96	Rat	cytoskeleton	located_in	IEA	UniProtKB-KW:KW-0206	1600115	GO_REF:0000043	UniProt	GO_REF:0000043

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

PMID:25074808

Cfap96
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	53,023,623 - 53,048,176 (+)	NCBI		GRCr8
mRatBN7.2	16	46,291,075 - 46,315,616 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	46,291,311 - 46,315,625 (+)	Ensembl		mRatBN7.2 Ensembl
Rnor_6.0	16	49,485,022 - 49,509,756 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	49,485,256 - 49,509,767 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	16	49,211,727 - 49,236,305 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	16	49,573,429 - 49,596,596 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	16	44,289,273 - 44,313,879 (+)	NCBI		Celera
Cytogenetic Map	16	q11	NCBI

CFAP96
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	185,408,434 - 185,449,826 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	185,426,249 - 185,449,826 (+)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	186,347,408 - 186,370,980 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	186,584,397 - 186,607,976 (+)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	183,676,735 - 183,698,471 (+)	NCBI		Celera
Cytogenetic Map	4	q35.1	NCBI
HuRef	4	182,103,998 - 182,124,561 (+)	NCBI		HuRef
CHM1_1	4	186,326,952 - 186,347,263 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	4	188,748,560 - 188,793,104 (+)	NCBI		T2T-CHM13v2.0

Cfap96
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	46,387,980 - 46,428,290 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	46,406,643 - 46,428,477 (-)	Ensembl		GRCm39 Ensembl
GRCm38	8	45,939,196 - 45,975,488 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	45,953,606 - 45,975,440 (-)	Ensembl	GRCm38		mm10	GRCm38
GRCm38.p6 Ensembl	8	45,953,606 - 45,975,252 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	8	47,038,960 - 47,060,606 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	8	47,452,423 - 47,474,069 (-)	NCBI		MGSCv36	mm8
Celera	8	48,636,534 - 48,658,134 (-)	NCBI		Celera
Cytogenetic Map	8	B1.1	NCBI
cM Map	8	25.94	NCBI

Cfap96
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955403	23,619,399 - 23,634,731 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955403	23,617,764 - 23,634,689 (-)	NCBI	ChiLan1.0	ChiLan1.0

CFAP96
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	183,161,235 - 183,184,786 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	183,509,622 - 183,533,153 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	177,589,308 - 177,612,834 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	189,805,849 - 189,828,919 (+)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	189,805,849 - 189,828,919 (+)	Ensembl	panpan1.1		panPan2

CFAP96
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	45,175,351 - 45,208,647 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	45,192,032 - 45,207,964 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	45,659,950 - 45,696,251 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	47,388,187 - 47,424,657 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	47,407,942 - 47,421,691 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	45,356,199 - 45,392,486 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	45,968,604 - 46,005,328 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	46,100,390 - 46,136,694 (-)	NCBI		UU_Cfam_GSD_1.0

Cfap96
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	34,184,084 - 34,200,991 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936554	3,908,413 - 3,925,942 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936554	3,908,570 - 3,925,957 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CFAP96
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	46,470,765 - 46,490,006 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	46,470,680 - 46,612,173 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	53,252,277 - 53,271,631 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CFAP96
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	7	131,375,653 - 131,399,429 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	7	131,375,619 - 131,399,235 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666037	111,637,331 - 111,661,131 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cfap96
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624769	16,283,614 - 16,307,579 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624769	16,281,200 - 16,314,879 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants in Cfap96
164 total Variants

Predicted Target Of

	Summary Value
Count of predictions:	17
Count of miRNA genes:	16
Interacting mature miRNAs:	17
Transcripts:	ENSRNOT00000059317
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	37752156	82752156	Rat
1600378	Arunc4	Aerobic running capacity QTL 4		0.03	exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	380245	80345693	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	19004435	75226532	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	35288870	80288870	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4227609	60252231	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	21735975	66735975	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	42396345	84729064	Rat
737819	Hcas4	Hepatocarcinoma susceptibility QTL 4	4.43		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	16	4227609	46975965	Rat
631833	Sach2	Saccharin preference QTL 2	4	0.01	consumption behavior trait (VT:0002069)	calculated saccharin drink intake rate (CMO:0001613)	16	43024842	50166018	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	24325513	69325513	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	16	31951520	60148445	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	832236	59492508	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	832236	59492508	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	25152793	70152793	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	37752156	82752156	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	832236	59492508	Rat
61338	Bp23	Blood pressure QTL 23	4.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	16	4227609	49227609	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17696791	82635055	Rat
61405	Niddm6	Non-insulin dependent diabetes mellitus QTL 6	3.66	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	16	4227609	48972724	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	832236	59492508	Rat

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
7	9	43	113	80	79	48	20	48	6	192	84	93	45	60	31


RefSeq Transcripts	NM_001433152	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433153	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001433154	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001061230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222239	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006222240	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017587576	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017600365	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_577523	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC114502	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	AC130162	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000059317 ⟹ ENSRNOP00000056079

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	16	46,291,311 - 46,315,625 (+)	Ensembl
Rnor_6.0 Ensembl	16	49,485,256 - 49,509,767 (+)	Ensembl

RefSeq Acc Id:

XM_006253169 ⟹ XP_006253231

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,023,863 - 53,048,176 (+)	NCBI
mRatBN7.2	16	46,291,310 - 46,315,616 (+)	NCBI
Rnor_6.0	16	49,485,119 - 49,509,756 (+)	NCBI
Rnor_5.0	16	49,211,727 - 49,236,305 (+)	NCBI

Sequence:

show sequence

GGCCGAGACTTTTGTATTCTAAGGACTTTCTTCCATCTTCGCAAACGCGCTGTGCTGACTCGAATGTTTTGAGGGCCTCCAGGAGTATGTTGGGAATGGTTTCTTCCGTTCCCACGGCAACATGGCCT
AACAAGCGCCAGCTGCAGCTTGTGGAACTGTGCGGCGCGCGCCTCTGCAGCTGTGCCAAAGGCTCAAGCCCGGGCACAGGCGCGTGGCCCCAAGCTCTTCAAGCTCGGCGGTGGCGTGATCCCCGACC
CGGGATCTGATCCTGGTTGTGGAATTGATTAGTTTTCAGTGTAAAGTAGGATTTTGCTGTAAAAGAAGATCTAAGATCCTTTGTGAAGGTACCACCCCAAGAAGCAATCATGCCGATAGAAGGCGGGA
AAACGGATATGGAGAGGATTGGCCTCTTCAGTGAGATGGAATACATCACAGTGGGCGACAGATATGTGTCACCATTTAATCGACCCTTCAATGAGGCTGCAAGCAAAAATAGACAGATGCTCCCTGGG
GGGACCAAAGAAATGTCCAATCTCCAGGCAGGGTACTTTGATCCCCAGTTCGCAAGGATTTTTGAAGGGGAAGGCTACCTGAATTTGAATCAAGTGAGGAGACAGTATATGATGGCAGAAGCCAAGAA
GAACCTAGGCAAAGCCTTCATTCCTAGTAGCGGAGAGAAAAAGCCAAGTGGATTAGGAAGCTATTATGGAACCATCGGCGGCCCTGTCCCATTCTTTAGCGCTCAGATAAAACCCAGGGACAAATATC
AGCCACCGGGGAAGAATTTATACACCAACCCGGGAAAAAAAGGAACTGGATACGGTTATGCCAATGTTACCATAGGCAGGCAGCTTTCACACTCTTCTGACTTGTACGATGCAGCGAAACAGAATTTT
AAGAAAGAAAGTGAAGAACACCATCGGTTAATGAAAGGGTCACCTTTCAAGCTGCATCTTCACCCAAAGGACTATTTTGATACTAACCCTTATTTTTTAGAGCATCCTTTACCTCCACTGAGGAGAGA
GGAAAAGAAGGAGTCTTCTGTAAAGCCCTTTAAGCCCTCCTCTCCTGGCAAAAAGGCTGGTGGAATGAAAGCAGGAACATTTGAACCTTACCCATCACACTCAGCTGACCCTTATGTGGTGAAAGTGG
GAAAGGTGATGCCTTCGAAAGGTGAAAAGGTTTTCCACCCACCAAACGGACCAAAAAGCAGACCCATTGAAAGTATAATGGCGCTGAATGTCAGAAGGGCACTAAATGTGAAGAACTACAAGAATGCC
TCCTCTTCCACACTGGAAAAACAGCTAGTTTACTAGATCCTCTTGGAAGCGCAGAGAATTCACAATGTTCTGGAACAAGCAGCTCTGCAGCAGCTAAAGGAAATTTAAACATGAGGCTCAACTCTAAT
GTCCTTCCTGATTTTAATGCTTTTTAATAAATAATGTTGGCTAATGACTTAA

hide sequence

RefSeq Acc Id:

XM_006253170 ⟹ XP_006253232

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,023,623 - 53,048,176 (+)	NCBI
mRatBN7.2	16	46,291,075 - 46,315,616 (+)	NCBI
Rnor_6.0	16	49,485,022 - 49,509,756 (+)	NCBI
Rnor_5.0	16	49,211,727 - 49,236,305 (+)	NCBI

Sequence:

show sequence

CCAGAATGCCCCACACCAACCATCTCGGGGCGTACCACCACAGAAACTATTCGCCGATGAAGGG
GAAACAAAAGTTTTCAGTGTAAAGTAGGATTTTGCTGTAAAAGAAGATCTAAGATCCTTTGTGAAGGTACCACCCCAAGAAGCAATCATGCCGATAGAAGGCGGGAAAACGGATATGGAGAGGATTGG
CCTCTTCAGTGAGATGGAATACATCACAGTGGGCGACAGATATGTGTCACCATTTAATCGACCCTTCAATGAGGCTGCAAGCAAAAATAGACAGATGCTCCCTGGGGGGACCAAAGAAATGTCCAATC
TCCAGGCAGGGTACTTTGATCCCCAGTTCGCAAGGATTTTTGAAGGGGAAGGCTACCTGAATTTGAATCAAGTGAGGAGACAGTATATGATGGCAGAAGCCAAGAAGAACCTAGGCAAAGCCTTCATT
CCTAGTAGCGGAGAGAAAAAGCCAAGTGGATTAGGAAGCTATTATGGAACCATCGGCGGCCCTGTCCCATTCTTTAGCGCTCAGATAAAACCCAGGGACAAATATCAGCCACCGGGGAAGAATTTATA
CACCAACCCGGGAAAAAAAGGAACTGGATACGGTTATGCCAATGTTACCATAGGCAGGCAGCTTTCACACTCTTCTGACTTGTACGATGCAGCGAAACAGAATTTTAAGAAAGAAAGTGAAGAACACC
ATCGGTTAATGAAAGGGTCACCTTTCAAGCTGCATCTTCACCCAAAGGACTATTTTGATACTAACCCTTATTTTTTAGAGCATCCTTTACCTCCACTGAGGAGAGAGGAAAAGAAGGAGTCTTCTGTA
AAGCCCTTTAAGCCCTCCTCTCCTGGCAAAAAGGCTGGTGGAATGAAAGCAGGAACATTTGAACCTTACCCATCACACTCAGCTGACCCTTATGTGGTGAAAGTGGGAAAGGTGATGCCTTCGAAAGG
TGAAAAGGTTTTCCACCCACCAAACGGACCAAAAAGCAGACCCATTGAAAGTATAATGGCGCTGAATGTCAGAAGGGCACTAAATGTGAAGAACTACAAGAATGCCTCCTCTTCCACACTGGAAAAAC
AGCTAGTTTACTAGATCCTCTTGGAAGCGCAGAGAATTCACAATGTTCTGGAACAAGCAGCTCTGCAGCAGCTAAAGGAAATTTAAACATGAGGCTCAACTCTAATGTCCTTCCTGATTTTAATGCTT
TTTAATAAATAATGTTGGCTAATGACTTAA

hide sequence

RefSeq Acc Id:

XM_577523 ⟹ XP_577523

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	53,023,871 - 53,048,176 (+)	NCBI
mRatBN7.2	16	46,291,306 - 46,315,616 (+)	NCBI
Rnor_6.0	16	49,485,119 - 49,509,756 (+)	NCBI
Rnor_5.0	16	49,211,727 - 49,236,305 (+)	NCBI
RGSC_v3.4	16	49,573,429 - 49,596,596 (+)	RGD

Sequence:

show sequence

GGCCGAGACTTTTGTATTCTAAGGACTTTCTTCCATCTTCGCAAACGCGCTGTGCTGACTCGAA
TGTTTTGAGGGCCTCCAGGAGTATGTTGGGAATGGTTTCTTCCGTTCCCACGGCAACATGGCCTAACAAGCGCCAGCTGCAGCTTGTGGAACTGTGCGGCGCGCGCCTCTGCAGCTGTGCCAAAGGCT
CAAGCCCGGGCACAGGCGCGTGGCCCCAAGCTCTTCAAGCTCGGCGGTGGCGTGATCCCCGACCCGGGATCTGATCCTGGTTGTGGAATTGATTAGGTGCCTTTTTGGAGAGTTTTCAGTGTAAAGTA
GGATTTTGCTGTAAAAGAAGATCTAAGATCCTTTGTGAAGGTACCACCCCAAGAAGCAATCATGCCGATAGAAGGCGGGAAAACGGATATGGAGAGGATTGGCCTCTTCAGTGAGATGGAATACATCA
CAGTGGGCGACAGATATGTGTCACCATTTAATCGACCCTTCAATGAGGCTGCAAGCAAAAATAGACAGATGCTCCCTGGGGGGACCAAAGAAATGTCCAATCTCCAGGCAGGGTACTTTGATCCCCAG
TTCGCAAGGATTTTTGAAGGGGAAGGCTACCTGAATTTGAATCAAGTGAGGAGACAGTATATGATGGCAGAAGCCAAGAAGAACCTAGGCAAAGCCTTCATTCCTAGTAGCGGAGAGAAAAAGCCAAG
TGGATTAGGAAGCTATTATGGAACCATCGGCGGCCCTGTCCCATTCTTTAGCGCTCAGATAAAACCCAGGGACAAATATCAGCCACCGGGGAAGAATTTATACACCAACCCGGGAAAAAAAGGAACTG
GATACGGTTATGCCAATGTTACCATAGGCAGGCAGCTTTCACACTCTTCTGACTTGTACGATGCAGCGAAACAGAATTTTAAGAAAGAAAGTGAAGAACACCATCGGTTAATGAAAGGGTCACCTTTC
AAGCTGCATCTTCACCCAAAGGACTATTTTGATACTAACCCTTATTTTTTAGAGCATCCTTTACCTCCACTGAGGAGAGAGGAAAAGAAGGAGTCTTCTGTAAAGCCCTTTAAGCCCTCCTCTCCTGG
CAAAAAGGCTGGTGGAATGAAAGCAGGAACATTTGAACCTTACCCATCACACTCAGCTGACCCTTATGTGGTGAAAGTGGGAAAGGTGATGCCTTCGAAAGGTGAAAAGGTTTTCCACCCACCAAACG
GACCAAAAAGCAGACCCATTGAAAGTATAATGGCGCTGAATGTCAGAAGGGCACTAAATGTGAAGAACTACAAGAATGCCTCCTCTTCCACACTGGAAAAACAGCTAGTTTACTAGATCCTCTTGGAA
GCGCAGAGAATTCACAATGTTCTGGAACAAGCAGCTCTGCAGCAGCTAAAGGAAATTTAAACATGAGGCTCAACTCTAATGTCCTTCCTGATTTTAATGCTTTTTAATAAATAATGTTGGCTAATGAC
TTAA

hide sequence


Protein RefSeqs	NP_001420081	(Get FASTA)	NCBI Sequence Viewer
	NP_001420082	(Get FASTA)	NCBI Sequence Viewer
	NP_001420083	(Get FASTA)	NCBI Sequence Viewer
	XP_006253231	(Get FASTA)	NCBI Sequence Viewer
	XP_006253232	(Get FASTA)	NCBI Sequence Viewer
	XP_577523	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL78867	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000056079
	ENSRNOP00000056079.2

RefSeq Acc Id:

XP_577523 ⟸ XM_577523

- Sequence:

show sequence

MPIEGGKTDMERIGLFSEMEYITVGDRYVSPFNRPFNEAASKNRQMLPGGTKEMSNLQAGYFDPQFARIFEGEGYLNLNQVRRQYMMAEAKKNLGKAFIPSSGEKKPSGLGSYYGTIGGPVPFFSAQI
KPRDKYQPPGKNLYTNPGKKGTGYGYANVTIGRQLSHSSDLYDAAKQNFKKESEEHHRLMKGSPFKLHLHPKDYFDTNPYFLEHPLPPLRREEKKESSVKPFKPSSPGKKAGGMKAGTFEPYPSHSAD
PYVVKVGKVMPSKGEKVFHPPNGPKSRPIESIMALNVRRALNVKNYKNASSSTLEKQLVY

hide sequence

RefSeq Acc Id:

XP_006253232 ⟸ XM_006253170

- Sequence:

show sequence

MPIEGGKTDMERIGLFSEMEYITVGDRYVSPFNRPFNEAASKNRQMLPGGTKEMSNLQAGYFDP
QFARIFEGEGYLNLNQVRRQYMMAEAKKNLGKAFIPSSGEKKPSGLGSYYGTIGGPVPFFSAQIKPRDKYQPPGKNLYTNPGKKGTGYGYANVTIGRQLSHSSDLYDAAKQNFKKESEEHHRLMKGSP
FKLHLHPKDYFDTNPYFLEHPLPPLRREEKKESSVKPFKPSSPGKKAGGMKAGTFEPYPSHSADPYVVKVGKVMPSKGEKVFHPPNGPKSRPIESIMALNVRRALNVKNYKNASSSTLEKQLVY

hide sequence

RefSeq Acc Id:

XP_006253231 ⟸ XM_006253169

- Sequence:

show sequence

MPIEGGKTDMERIGLFSEMEYITVGDRYVSPFNRPFNEAASKNRQMLPGGTKEMSNLQAGYFDPQFARIFEGEGYLNLNQVRRQYMMAEAKKNLGKAFIPSSGEKKPSGLGSYYGTIGGPVPFFSAQI
KPRDKYQPPGKNLYTNPGKKGTGYGYANVTIGRQLSHSSDLYDAAKQNFKKESEEHHRLMKGSPFKLHLHPKDYFDTNPYFLEHPLPPLRREEKKESSVKPFKPSSPGKKAGGMKAGTFEPYPSHSAD
PYVVKVGKVMPSKGEKVFHPPNGPKSRPIESIMALNVRRALNVKNYKNASSSTLEKQLVY

hide sequence

Ensembl Acc Id:

ENSRNOP00000056079 ⟸ ENSRNOT00000059317

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZVL4-F1-model_v2	AlphaFold	D3ZVL4	1-316	view protein structure

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

RGD ID:

13700112

Promoter ID:

EPDNEW_R10628

Type:

initiation region

Name:

RGD1564308_1

Description:

similar to LOC495042 protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	49,485,225 - 49,485,285	EPDNEW

Database	Acc Id	Source(s)
BioCyc Gene	G2FUF-11330	BioCyc
Ensembl Genes	ENSRNOG00000038819	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000059317	ENTREZGENE
	ENSRNOT00000059317.4	UniProtKB/TrEMBL
InterPro	DUF4586	UniProtKB/TrEMBL
KEGG Report	rno:502086	UniProtKB/TrEMBL
NCBI Gene	502086	ENTREZGENE
PANTHER	PTHR31144	UniProtKB/TrEMBL
	UPF0602 PROTEIN C4ORF47	UniProtKB/TrEMBL
Pfam	DUF4586	UniProtKB/TrEMBL
PhenoGen	Cfap96	PhenoGen
RatGTEx	ENSRNOG00000038819	RatGTEx
UniProt	A6JPQ5	ENTREZGENE, UniProtKB/TrEMBL
	D3ZVL4	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-05-12	Cfap96	cilia and flagella associated protein 96	C16h4orf47	similar to human chromosome 4 open reading frame 47	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2022-07-13	C16h4orf47	similar to human chromosome 4 open reading frame 47	RGD1564308	similar to LOC495042 protein	Name and Symbol changed	629549	APPROVED
2021-03-09	RGD1564308	similar to LOC495042 protein	LOC100911106	UPF0602 protein C4orf47 homolog	Data merged from RGD:6495075	737654	PROVISIONAL
2012-07-05	LOC100911106	UPF0602 protein C4orf47 homolog			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	RGD1564308	similar to LOC495042 protein	RGD1564308_predicted	similar to LOC495042 protein (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564308_predicted	similar to LOC495042 protein (predicted)	LOC502086	similar to LOC495042 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC502086	similar to LOC495042 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailable


InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailable


Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
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Imported Disease Annotations - ClinVar