Syde2 (Rattus norvegicus - Norway rat) |
| Rat Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCr8 | 2 | 237,557,395 - 237,591,290 (+) | NCBI | GRCr8 | GRCr8 | | GRCr8 | GRCr8 Ensembl | 2 | 237,558,274 - 237,591,290 (+) | Ensembl | | | | GRCr8 | mRatBN7.2 | 2 | 234,897,975 - 234,930,994 (+) | NCBI | mRatBN7.2 | mRatBN7.2 | | | mRatBN7.2 Ensembl | 2 | 234,897,717 - 234,930,994 (+) | Ensembl | | | | mRatBN7.2 | UTH_Rnor_SHR_Utx | 2 | 242,690,164 - 242,723,132 (+) | NCBI | UTH_Rnor_SHR_Utx | UTH_Rnor_SHR_Utx | | | UTH_Rnor_SHRSP_BbbUtx_1.0 | 2 | 240,580,564 - 240,613,520 (+) | NCBI | UTH_Rnor_SHRSP_BbbUtx_1.0 | UTH_Rnor_SHRSP_BbbUtx_1.0 | | | UTH_Rnor_WKY_Bbb_1.0 | 2 | 235,447,782 - 235,480,755 (+) | NCBI | UTH_Rnor_WKY_Bbb_1.0 | UTH_Rnor_WKY_Bbb_1.0 | | | Rnor_6.0 | 2 | 251,861,900 - 251,895,524 (+) | NCBI | Rnor_6.0 | Rnor_6.0 | rn6 | Rnor6.0 | Rnor_6.0 Ensembl | 2 | 251,863,069 - 251,894,037 (+) | Ensembl | | | rn6 | Rnor6.0 | Rnor_5.0 | 2 | 270,385,411 - 270,419,064 (+) | NCBI | Rnor_5.0 | Rnor_5.0 | rn5 | | RGSC_v3.4 | 2 | 244,166,412 - 244,199,033 (+) | NCBI | RGSC_v3.4 | RGSC_v3.4 | rn4 | | Celera | 2 | 226,880,380 - 226,913,328 (+) | NCBI | | Celera | | | Cytogenetic Map | 2 | q44 | NCBI | | | | |
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SYDE2 (Homo sapiens - human) |
| Human Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCh38 | 1 | 85,152,491 - 85,201,016 (-) | NCBI | GRCh38 | GRCh38 | hg38 | GRCh38 | GRCh38.p14 Ensembl | 1 | 85,156,851 - 85,201,724 (-) | Ensembl | | | hg38 | GRCh38 | GRCh37 | 1 | 85,622,572 - 85,666,699 (-) | NCBI | GRCh37 | GRCh37 | hg19 | GRCh37 | Build 36 | 1 | 85,395,944 - 85,439,316 (-) | NCBI | Build 36 | Build 36 | hg18 | NCBI36 | Celera | 1 | 83,867,794 - 83,911,153 (-) | NCBI | | Celera | | | Cytogenetic Map | 1 | p22.3 | NCBI | | | | | HuRef | 1 | 83,733,947 - 83,777,560 (-) | NCBI | | HuRef | | | CHM1_1 | 1 | 85,738,965 - 85,782,326 (-) | NCBI | | CHM1_1 | | | T2T-CHM13v2.0 | 1 | 84,997,997 - 85,042,131 (-) | NCBI | | T2T-CHM13v2.0 | | |
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Syde2 (Mus musculus - house mouse) |
| Mouse Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
GRCm39 | 3 | 145,693,160 - 145,727,475 (+) | NCBI | GRCm39 | GRCm39 | mm39 | | GRCm39 Ensembl | 3 | 145,693,625 - 145,727,475 (+) | Ensembl | | GRCm39 Ensembl | | GRCm39 | GRCm38 | 3 | 145,987,405 - 146,021,720 (+) | NCBI | GRCm38 | GRCm38 | mm10 | GRCm38 | GRCm38.p6 Ensembl | 3 | 145,987,870 - 146,021,720 (+) | Ensembl | | | mm10 | GRCm38 | MGSCv37 | 3 | 145,650,834 - 145,684,684 (+) | NCBI | MGSCv37 | MGSCv37 | mm9 | NCBIm37 | MGSCv36 | 3 | 145,924,785 - 145,959,489 (+) | NCBI | | MGSCv36 | mm8 | | MGSCv36 | 3 | 146,523,395 - 146,558,245 (+) | NCBI | | MGSCv36 | mm8 | | Celera | 3 | 152,441,267 - 152,475,540 (+) | NCBI | | Celera | | | Cytogenetic Map | 3 | H2 | NCBI | | | | | cM Map | 3 | 71.03 | NCBI | | | | |
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Syde2 (Chinchilla lanigera - long-tailed chinchilla) |
| Chinchilla Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChiLan1.0 Ensembl | NW_004955423 | 8,783,116 - 8,838,665 (+) | Ensembl | | | | | ChiLan1.0 | NW_004955423 | 8,783,116 - 8,839,927 (+) | NCBI | ChiLan1.0 | ChiLan1.0 | | |
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SYDE2 (Pan paniscus - bonobo/pygmy chimpanzee) |
| Bonobo Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
NHGRI_mPanPan1-v2 | 1 | 141,731,421 - 141,781,181 (+) | NCBI | | NHGRI_mPanPan1-v2 | | | NHGRI_mPanPan1 | 1 | 140,886,701 - 140,936,510 (+) | NCBI | | NHGRI_mPanPan1 | | | Mhudiblu_PPA_v0 | 1 | 117,713,925 - 117,759,382 (-) | NCBI | Mhudiblu_PPA_v0 | Mhudiblu_PPA_v0 | panPan3 | | PanPan1.1 | 1 | 86,571,404 - 86,615,051 (-) | NCBI | PanPan1.1 | PanPan1.1 | panPan2 | | PanPan1.1 Ensembl | 1 | 86,571,431 - 86,615,051 (-) | Ensembl | | | panPan2 | panpan1.1 |
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SYDE2 (Canis lupus familiaris - dog) |
| Dog Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
CanFam3.1 | 6 | 62,768,892 - 62,822,550 (+) | NCBI | CanFam3.1 | CanFam3.1 | canFam3 | CanFam3.1 | CanFam3.1 Ensembl | 6 | 62,775,056 - 62,820,677 (+) | Ensembl | | | canFam3 | CanFam3.1 | Dog10K_Boxer_Tasha | 6 | 65,422,892 - 65,471,269 (+) | NCBI | Dog10K_Boxer_Tasha | Dog10K_Boxer_Tasha | | | ROS_Cfam_1.0 | 6 | 63,314,310 - 63,362,687 (+) | NCBI | ROS_Cfam_1.0 | ROS_Cfam_1.0 | | | ROS_Cfam_1.0 Ensembl | 6 | 63,314,148 - 63,360,988 (+) | Ensembl | | | | ROS_Cfam_1.0 Ensembl | UMICH_Zoey_3.1 | 6 | 62,841,461 - 62,889,829 (+) | NCBI | | UMICH_Zoey_3.1 | | | UNSW_CanFamBas_1.0 | 6 | 62,811,662 - 62,860,036 (+) | NCBI | | UNSW_CanFamBas_1.0 | | | UU_Cfam_GSD_1.0 | 6 | 63,319,495 - 63,367,884 (+) | NCBI | UU_Cfam_GSD_1.0 | UU_Cfam_GSD_1.0 | | |
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Syde2 (Ictidomys tridecemlineatus - thirteen-lined ground squirrel) |
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SYDE2 (Sus scrofa - pig) |
| Pig Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
Sscrofa11.1 Ensembl | 4 | 130,702,424 - 130,749,734 (+) | Ensembl | | | susScr11 | Sscrofa11.1 | Sscrofa11.1 | 4 | 130,702,340 - 130,749,742 (+) | NCBI | Sscrofa11.1 | Sscrofa11.1 | susScr11 | Sscrofa11.1 | Sscrofa10.2 | 4 | 143,278,477 - 143,325,873 (-) | NCBI | Sscrofa10.2 | Sscrofa10.2 | susScr3 | |
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SYDE2 (Chlorocebus sabaeus - green monkey) |
| Green Monkey Assembly | Chr | Position (strand) | Source | Genome Browsers |
|---|
| JBrowse | NCBI | UCSC | Ensembl |
|---|
ChlSab1.1 | 20 | 48,146,793 - 48,190,946 (+) | NCBI | ChlSab1.1 | ChlSab1.1 | chlSab2 | | ChlSab1.1 Ensembl | 20 | 48,149,023 - 48,190,190 (+) | Ensembl | | ChlSab1.1 Ensembl | chlSab2 | Vervet-AGM | Vero_WHO_p1.0 | NW_023666033 | 69,618,409 - 69,660,914 (-) | NCBI | Vero_WHO_p1.0 | Vero_WHO_p1.0 | | |
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Syde2 (Heterocephalus glaber - naked mole-rat) |
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Syde2 (Rattus rattus - black rat) |
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