Ccdc18 (coiled-coil domain containing 18) - Rat Genome Database

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Gene: Ccdc18 (coiled-coil domain containing 18) Rattus norvegicus
Analyze
Symbol: Ccdc18
Name: coiled-coil domain containing 18
RGD ID: 1564165
Description: Predicted to be located in centriolar satellite. Orthologous to human CCDC18 (coiled-coil domain containing 18); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: coiled-coil domain-containing protein 18; LOC305628; RGD1564165; similar to Sarcoma antigen NY-SAR-41
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8141,646,725 - 1,752,581 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl141,646,809 - 1,750,470 (-)EnsemblGRCr8
mRatBN7.2141,501,749 - 1,607,672 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,501,784 - 1,607,711 (-)EnsemblmRatBN7.2
Rnor_6.0141,664,620 - 1,701,269 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0142,510,184 - 2,612,070 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,509,363 - 2,610,929 (-)Ensemblrn6Rnor6.0
Rnor_5.0142,506,290 - 2,612,027 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0141,659,851 - 1,696,600 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4142,052,777 - 2,153,204 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera141,523,549 - 1,628,382 (-)NCBICelera
Cytogenetic Map14p22NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Ccdc18
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8141,646,725 - 1,752,581 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl141,646,809 - 1,750,470 (-)EnsemblGRCr8
mRatBN7.2141,501,749 - 1,607,672 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl141,501,784 - 1,607,711 (-)EnsemblmRatBN7.2
Rnor_6.0141,664,620 - 1,701,269 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0142,510,184 - 2,612,070 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl142,509,363 - 2,610,929 (-)Ensemblrn6Rnor6.0
Rnor_5.0142,506,290 - 2,612,027 (-)NCBIRnor_5.0Rnor_5.0rn5
Rnor_5.0141,659,851 - 1,696,600 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4142,052,777 - 2,153,204 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera141,523,549 - 1,628,382 (-)NCBICelera
Cytogenetic Map14p22NCBI
CCDC18
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38193,179,913 - 93,278,730 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl193,179,895 - 93,279,048 (+)Ensemblhg38GRCh38
GRCh37193,646,273 - 93,744,287 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36193,418,508 - 93,516,858 (+)NCBIBuild 36Build 36hg18NCBI36
Celera191,900,087 - 91,998,449 (+)NCBICelera
Cytogenetic Map1p22.1NCBI
HuRef191,767,841 - 91,865,871 (+)NCBIHuRef
CHM1_1193,761,185 - 93,859,155 (+)NCBICHM1_1
T2T-CHM13v2.0193,021,277 - 93,124,322 (+)NCBIT2T-CHM13v2.0
Ccdc18
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395108,280,583 - 108,388,378 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5108,280,741 - 108,381,494 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm385108,132,661 - 108,240,512 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5108,132,875 - 108,233,628 (+)Ensemblmm10GRCm38
MGSCv375108,561,933 - 108,661,970 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365108,373,216 - 108,473,253 (+)NCBIMGSCv36mm8
Celera5105,251,064 - 105,352,839 (+)NCBICelera
Cytogenetic Map5FNCBI
cM Map552.55NCBI
Ccdc18
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554231,356,298 - 1,434,413 (-)Ensembl
ChiLan1.0NW_0049554231,357,515 - 1,423,094 (-)NCBIChiLan1.0ChiLan1.0
CCDC18
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21133,738,278 - 133,836,146 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11132,893,102 - 132,991,032 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0195,849,696 - 95,947,257 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1194,582,918 - 94,678,876 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl194,585,567 - 94,678,749 (+)EnsemblpanPan2panpan1.1
CCDC18
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1655,816,120 - 55,917,760 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl655,816,120 - 55,917,912 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha658,516,883 - 58,618,589 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0656,191,016 - 56,292,764 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl656,191,004 - 56,292,797 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1655,870,251 - 55,972,780 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0655,849,295 - 55,951,307 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0656,308,700 - 56,410,416 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Ccdc18
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405058102,910,009 - 103,023,813 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365375,952,813 - 6,035,365 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365375,933,468 - 6,037,921 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
CCDC18
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl4123,902,188 - 124,009,538 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.14123,837,581 - 124,010,291 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.24135,542,392 - 135,564,264 (-)NCBISscrofa10.2Sscrofa10.2susScr3
CCDC18
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12039,968,705 - 40,074,337 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2039,975,896 - 40,074,463 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366603377,952,983 - 78,062,394 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Ccdc18
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247424,385,010 - 4,506,567 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247424,343,451 - 4,508,787 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Ccdc18
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11117,941,767 - 18,037,967 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Ccdc18
739 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:116
Count of miRNA genes:96
Interacting mature miRNAs:102
Transcripts:ENSRNOT00000036442, ENSRNOT00000066027
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
7411573Bw139Body weight QTL 1394.70.001body mass (VT:0001259)body weight gain (CMO:0000420)14140068101Rat
9589814Gluco67Glucose level QTL 674.540.001blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14140068101Rat
634352Apr6Acute phase response QTL 63.7blood interleukin-6 amount (VT:0008595)plasma interleukin-6 level (CMO:0001927)14141415516Rat
71115Niddm15Non-insulin dependent diabetes mellitus QTL 154.8blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14111334906Rat
71117Niddm17Non-insulin dependent diabetes mellitus QTL 172.35blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)14117877928Rat
70204Niddm20Non-insulin dependent diabetes mellitus QTL 205.10.000008blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)14131893212Rat

Markers in Region
D14Rat70  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_5.0141,699,650 - 1,699,823NCBIRnor5.0
Rnor_5.0142,575,480 - 2,575,949NCBIRnor5.0
Rnor_5.0142,575,570 - 2,575,743NCBIRnor5.0
RGSC_v3.4142,118,801 - 2,118,973UniSTSRGSC3.4
RGSC_v3.4142,118,711 - 2,119,179RGDRGSC3.4
RGSC_v3.4142,089,333 - 2,089,501UniSTSRGSC3.4
Celera141,591,849 - 1,592,023UniSTS
Celera141,562,457 - 1,562,613UniSTS
RGSC_v3.1142,118,801 - 2,118,973RGD
RH 3.4 Map1429.4RGD
RH 3.4 Map1429.4UniSTS
RH 2.0 Map1437.0RGD
SHRSP x BN Map140.0RGD
Cytogenetic Map14p22UniSTS
D14Rat111  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8141,704,281 - 1,704,496 (+)Marker Load Pipeline
mRatBN7.2141,559,312 - 1,559,527 (+)MAPPERmRatBN7.2
Rnor_6.0142,564,744 - 2,564,958NCBIRnor6.0
Rnor_5.0142,563,788 - 2,564,002UniSTSRnor5.0
Rnor_5.01138,631,875 - 38,632,089UniSTSRnor5.0
RGSC_v3.4142,107,017 - 2,107,231UniSTSRGSC3.4
RGSC_v3.4142,107,016 - 2,107,231RGDRGSC3.4
RGSC_v3.41135,054,436 - 35,054,651RGDRGSC3.4
RGSC_v3.41135,054,437 - 35,054,651UniSTSRGSC3.4
Celera141,580,055 - 1,580,269UniSTS
RGSC_v3.1142,107,017 - 2,107,231RGD
RH 3.4 Map1426.6UniSTS
RH 3.4 Map1426.6RGD
RH 2.0 Map1419.9RGD
SHRSP x BN Map140.0RGD
Cytogenetic Map14p22UniSTS
Cytogenetic Map11q11UniSTS
28.MMHAP88FRB10.seq  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2141,589,757 - 1,589,920 (+)MAPPERmRatBN7.2
Rnor_6.0142,595,183 - 2,595,345NCBIRnor6.0
Rnor_5.0142,594,227 - 2,594,389UniSTSRnor5.0
RGSC_v3.4142,137,459 - 2,137,621UniSTSRGSC3.4
Celera141,610,508 - 1,610,670UniSTS
Cytogenetic Map14p22UniSTS
BM383200  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2141,518,942 - 1,519,162 (+)MAPPERmRatBN7.2
Rnor_6.0142,524,362 - 2,524,581NCBIRnor6.0
Rnor_6.0141,681,736 - 1,681,955NCBIRnor6.0
Rnor_5.0142,523,406 - 2,523,625UniSTSRnor5.0
Rnor_5.0141,676,967 - 1,677,186UniSTSRnor5.0
RGSC_v3.4142,066,649 - 2,066,868UniSTSRGSC3.4
Celera141,540,681 - 1,540,900UniSTS
RH 3.4 Map140.0UniSTS
Cytogenetic Map14p22UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 66 165 91 90 59 84 59 6 346 183 11 144 80 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts XM_006221639 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006250522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017599408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604738 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604740 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092610 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092613 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092614 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092615 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092616 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092618 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092619 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092620 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092621 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039092622 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273809 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273810 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063273811 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH474079 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000014 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000036442   ⟹   ENSRNOP00000035046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl141,504,729 - 1,607,711 (-)Ensembl
Rnor_6.0 Ensembl142,509,363 - 2,610,929 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000097632   ⟹   ENSRNOP00000096972
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl141,650,042 - 1,750,139 (-)Ensembl
mRatBN7.2 Ensembl141,501,790 - 1,607,711 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000101984   ⟹   ENSRNOP00000097458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl141,646,809 - 1,750,470 (-)Ensembl
mRatBN7.2 Ensembl141,501,784 - 1,607,711 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000117949   ⟹   ENSRNOP00000088448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl141,646,837 - 1,750,470 (-)Ensembl
mRatBN7.2 Ensembl141,501,784 - 1,607,711 (-)Ensembl
RefSeq Acc Id: XM_039092610   ⟹   XP_038948538
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8141,646,725 - 1,751,768 (-)NCBI
mRatBN7.2141,501,790 - 1,607,672 (-)NCBI
RefSeq Acc Id: XM_039092613   ⟹   XP_038948541
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8141,646,725 - 1,752,581 (-)NCBI
mRatBN7.2141,501,790 - 1,607,672 (-)NCBI
RefSeq Acc Id: XM_039092614   ⟹   XP_038948542
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8141,646,725 - 1,750,801 (-)NCBI
mRatBN7.2141,501,790 - 1,607,672 (-)NCBI
RefSeq Acc Id: XM_039092615   ⟹   XP_038948543
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8141,646,725 - 1,750,801 (-)NCBI
mRatBN7.2141,501,749 - 1,607,672 (-)NCBI
RefSeq Acc Id: XM_039092616   ⟹   XP_038948544
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8141,646,725 - 1,750,801 (-)NCBI
mRatBN7.2141,501,790 - 1,607,672 (-)NCBI
RefSeq Acc Id: XM_039092618   ⟹   XP_038948546
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8141,646,725 - 1,752,581 (-)NCBI
mRatBN7.2141,501,790 - 1,607,672 (-)NCBI
RefSeq Acc Id: XM_039092619   ⟹   XP_038948547
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8141,646,725 - 1,750,801 (-)NCBI
mRatBN7.2141,501,790 - 1,607,672 (-)NCBI
RefSeq Acc Id: XM_039092620   ⟹   XP_038948548
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8141,646,725 - 1,750,801 (-)NCBI
mRatBN7.2141,501,749 - 1,607,672 (-)NCBI
RefSeq Acc Id: XM_039092621   ⟹   XP_038948549
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8141,646,725 - 1,747,214 (-)NCBI
mRatBN7.2141,501,790 - 1,602,252 (-)NCBI
RefSeq Acc Id: XM_039092622   ⟹   XP_038948550
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8141,690,634 - 1,750,801 (-)NCBI
mRatBN7.2141,545,668 - 1,607,672 (-)NCBI
RefSeq Acc Id: XM_063273809   ⟹   XP_063129879
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8141,646,725 - 1,752,581 (-)NCBI
RefSeq Acc Id: XM_063273810   ⟹   XP_063129880
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8141,646,725 - 1,752,113 (-)NCBI
RefSeq Acc Id: XM_063273811   ⟹   XP_063129881
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8141,689,735 - 1,750,801 (-)NCBI
Ensembl Acc Id: ENSRNOP00000035046   ⟸   ENSRNOT00000036442
RefSeq Acc Id: XP_038948548   ⟸   XM_039092620
- Peptide Label: isoform X7
- UniProtKB: A0A8I6AUE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948543   ⟸   XM_039092615
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A9T7 (UniProtKB/TrEMBL),   A0A8I6AUE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948546   ⟸   XM_039092618
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AMZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948541   ⟸   XM_039092613
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AUE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948538   ⟸   XM_039092610
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AUE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948542   ⟸   XM_039092614
- Peptide Label: isoform X2
- UniProtKB: A0A8I6AUE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948544   ⟸   XM_039092616
- Peptide Label: isoform X4
- UniProtKB: A0A8I6AUE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948547   ⟸   XM_039092619
- Peptide Label: isoform X6
- UniProtKB: A0A8I6AUE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948549   ⟸   XM_039092621
- Peptide Label: isoform X8
- UniProtKB: A0A8I6AMZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038948550   ⟸   XM_039092622
- Peptide Label: isoform X10
Ensembl Acc Id: ENSRNOP00000097458   ⟸   ENSRNOT00000101984
Ensembl Acc Id: ENSRNOP00000096972   ⟸   ENSRNOT00000097632
Ensembl Acc Id: ENSRNOP00000088448   ⟸   ENSRNOT00000117949
RefSeq Acc Id: XP_063129879   ⟸   XM_063273809
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AUE9 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129880   ⟸   XM_063273810
- Peptide Label: isoform X5
- UniProtKB: A0A8I6AMZ4 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063129881   ⟸   XM_063273811
- Peptide Label: isoform X9

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4A317-F1-model_v2 AlphaFold D4A317 1-1384 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564165 AgrOrtholog
BioCyc Gene G2FUF-16655 BioCyc
Ensembl Genes ENSRNOG00000024545 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000097632 ENTREZGENE
  ENSRNOT00000097632.2 UniProtKB/TrEMBL
  ENSRNOT00000101984 ENTREZGENE
  ENSRNOT00000101984.2 UniProtKB/TrEMBL
  ENSRNOT00000117949 ENTREZGENE
  ENSRNOT00000117949.2 UniProtKB/TrEMBL
NCBI Gene 305628 ENTREZGENE
PANTHER PTHR18875:SF8 UniProtKB/TrEMBL
  SARCOMA ANTIGEN NY-SAR-24/CYTOSKELETAL PROTEIN SOJO UniProtKB/TrEMBL
PhenoGen Ccdc18 PhenoGen
RatGTEx ENSRNOG00000024545 RatGTEx
UniProt A0A8I6A9T7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AMZ4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AUE9 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-06 Ccdc18  coiled-coil domain containing 18  RGD1564165_predicted  similar to Sarcoma antigen NY-SAR-41 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564165_predicted  similar to Sarcoma antigen NY-SAR-41 (predicted)  LOC305628  similar to Sarcoma antigen NY-SAR-41  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC305628  similar to Sarcoma antigen NY-SAR-41      Symbol and Name status set to provisional 70820 PROVISIONAL