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Gene: Lrrn1 (leucine rich repeat neuronal 1) Rattus norvegicus

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Symbol:

Lrrn1

Name:

leucine rich repeat neuronal 1

RGD ID:

1564145

Description:

Predicted to enable signaling receptor activity. Predicted to act upstream of or within positive regulation of synapse assembly. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to human LRRN1 (leucine rich repeat neuronal 1); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

leucine-rich repeat neuronal protein 1; MGC124972; neuronal leucine-rich repeat protein 1; NLRR-1

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	LRRN1 (leucine rich repeat neuronal 1)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Lrrn1 (leucine rich repeat protein 1, neuronal)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Lrrn1 (leucine rich repeat neuronal 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	LRRN1 (leucine rich repeat neuronal 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LRRN1 (leucine rich repeat neuronal 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Lrrn1 (leucine rich repeat neuronal 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	LRRN1 (leucine rich repeat neuronal 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	LRRN1 (leucine rich repeat neuronal 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Lrrn1 (leucine rich repeat neuronal 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Lrrn1 (leucine rich repeat neuronal 1)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	LRRN1 (leucine rich repeat neuronal 1)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Lrrn1 (leucine rich repeat protein 1, neuronal)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	lrrn1 (leucine rich repeat neuronal 1)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	lron-8	Alliance	DIOPT (Ensembl Compara\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	lrrn1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lrrn1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	lrrn1-like	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	iglr-1	Alliance	DIOPT (Hieranoid\|OMA)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	142,032,805 - 142,072,320 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	142,032,041 - 142,074,760 (+)	Ensembl				GRCr8
mRatBN7.2	4	140,476,752 - 140,520,210 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	140,476,324 - 140,518,620 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	145,941,179 - 145,944,234 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	141,721,870 - 141,724,925 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	140,365,823 - 140,368,878 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	139,633,310 - 139,679,730 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	139,670,092 - 139,673,143 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	204,105,032 - 204,146,746 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	143,005,870 - 143,008,925 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	129,203,204 - 129,206,259 (+)	NCBI		Celera
Cytogenetic Map	4	q41	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

stomach cancer (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1-dichloroethene (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acetohydrazide (ISO)

aldehydo-D-glucose (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

calcitriol (ISO)

chlordecone (ISO)

choline (ISO)

cocaine (EXP)

copper atom (EXP)

copper(0) (EXP)

D-glucose (ISO)

dexamethasone (ISO)

dorsomorphin (ISO)

ethanol (ISO)

folic acid (ISO)

genistein (ISO)

glucose (ISO)

GSK-J4 (ISO)

hydrazine (ISO)

L-methionine (ISO)

lead(0) (ISO)

lipopolysaccharide (ISO)

mono(2-ethylhexyl) phthalate (ISO)

monobenzyl phthalate (ISO)

Monobutylphthalate (ISO)

monoethyl phthalate (ISO)

nickel atom (ISO)

nitrofen (EXP)

okadaic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctanoic acid (ISO)

pioglitazone (ISO)

progesterone (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

testosterone (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triclosan (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of synapse assembly (ISO)

Cellular Component

membrane (IEA)

plasma membrane (IBA)

Molecular Function

protein binding (ISO)

signaling receptor activity (IBA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Identification of a prognostic 5-Gene expression signature for gastric cancer.	Hou JY, etal., J Cancer Res Clin Oncol. 2017 Apr;143(4):619-629. doi: 10.1007/s00432-016-2324-z. Epub 2016 Dec 29.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:15489334	PMID:22871113	PMID:24613359

Genomics

Comparative Map Data

Lrrn1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	142,032,805 - 142,072,320 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	142,032,041 - 142,074,760 (+)	Ensembl				GRCr8
mRatBN7.2	4	140,476,752 - 140,520,210 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	140,476,324 - 140,518,620 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	4	145,941,179 - 145,944,234 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	4	141,721,870 - 141,724,925 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	4	140,365,823 - 140,368,878 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	4	139,633,310 - 139,679,730 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	139,670,092 - 139,673,143 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	204,105,032 - 204,146,746 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	143,005,870 - 143,008,925 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	129,203,204 - 129,206,259 (+)	NCBI		Celera
Cytogenetic Map	4	q41	NCBI

LRRN1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	3,799,431 - 3,849,834 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	3,799,378 - 3,849,834 (+)	Ensembl			hg38	GRCh38
GRCh37	3	3,841,115 - 3,891,518 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	3,816,121 - 3,864,387 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	3,816,549 - 3,864,303	NCBI
Celera	3	3,781,602 - 3,829,467 (+)	NCBI		Celera
Cytogenetic Map	3	p26.2	NCBI
HuRef	3	3,776,569 - 3,824,447 (+)	NCBI		HuRef
CHM1_1	3	3,791,254 - 3,839,196 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	3	3,795,791 - 3,845,800 (+)	NCBI		T2T-CHM13v2.0

Lrrn1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	107,506,687 - 107,547,189 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	107,506,729 - 107,547,175 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	107,529,726 - 107,570,228 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	107,529,768 - 107,570,214 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	107,479,779 - 107,520,204 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	107,495,560 - 107,535,987 (+)	NCBI		MGSCv36	mm8
Celera	6	109,345,386 - 109,385,852 (+)	NCBI		Celera
Cytogenetic Map	6	E1	NCBI
cM Map	6	49.71	NCBI

Lrrn1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955421	9,519,468 - 9,558,038 (-)	Ensembl
ChiLan1.0	NW_004955421	9,519,468 - 9,558,038 (-)	NCBI	ChiLan1.0	ChiLan1.0

LRRN1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	3,806,426 - 4,064,225 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	3,811,642 - 4,120,183 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	3,743,026 - 3,993,794 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	3,850,802 - 3,900,727 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	3,895,540 - 3,897,690 (+)	Ensembl			panPan2	panpan1.1

LRRN1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	20	13,612,829 - 13,651,983 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	20	13,617,196 - 13,619,346 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	20	13,580,502 - 13,619,610 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	20	13,645,454 - 13,684,832 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	20	13,647,249 - 13,684,435 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	20	13,348,313 - 13,387,426 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	20	13,683,051 - 13,722,396 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	20	13,672,116 - 13,711,238 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Lrrn1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404942	10,388,026 - 10,426,559 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936577	3,378,655 - 3,380,805 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936577	3,343,371 - 3,381,757 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

LRRN1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	60,393,650 - 60,432,802 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	60,393,622 - 60,436,076 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	13	66,680,366 - 66,718,528 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

LRRN1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	22	39,898,203 - 39,945,968 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	22	39,942,901 - 39,945,051 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	126,746,818 - 126,794,066 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Lrrn1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624773	14,047,723 - 14,087,311 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624773	14,047,768 - 14,092,615 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Lrrn1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	39,196,692 - 39,242,218 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Lrrn1
312 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	111
Count of miRNA genes:	81
Interacting mature miRNAs:	102
Transcripts:	ENSRNOT00000008879
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1582232	Gluco25	Glucose level QTL 25	3.6	0.0023	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	86583980	149763391	Rat
2302049	Pia32	Pristane induced arthritis QTL 32	5.1	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)	4	107346299	152346299	Rat
724558	Plsm2	Polydactyly-luxate syndrome (PLS) morphotypes QTL 2		0.0003	hindlimb integrity trait (VT:0010563)	hind foot phalanges count (CMO:0001949)	4	134095016	179095016	Rat
1300116	Hrtrt5	Heart rate QTL 5	3.76		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	117737142	152833657	Rat
1358364	Sradr4	Stress Responsive Adrenal Weight QTL 4	4.92		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	4	131384565	176384565	Rat
6478763	Anxrr46	Anxiety related response QTL 46		0.07428	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
6478760	Anxrr45	Anxiety related response QTL 45		0.06717	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	112427331	157427331	Rat
61451	Ciaa4	CIA Autoantibody QTL 4	3.1		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	4	123870974	168870974	Rat
1331738	Bp209	Blood pressure QTL 209	2.979		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	140059299	181024663	Rat
1331802	Srn5	Serum renin concentration QTL 5	3.045		renin activity (VT:0005581)	plasma renin activity level (CMO:0000116)	4	117559384	162559384	Rat
1298524	Oia8	Oil induced arthritis QTL 8			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
738009	Sach4	Saccharine consumption QTL 4	4.9	0.000016	consumption behavior trait (VT:0002069)	saccharin intake volume to total fluid intake volume ratio (CMO:0001601)	4	60916264	184426481	Rat
7207480	Bss105	Bone structure and strength QTL 105	8.1		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	4	111383604	156383604	Rat
731165	Uae21	Urinary albumin excretion QTL 21	2.4	0.0001	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	108206096	153206096	Rat
737821	Hcar9	Hepatocarcinoma resistance QTL 9	3.7		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	4	106848959	168870974	Rat
634335	Anxrr16	Anxiety related response QTL 16	7.22		locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	94638356	168870820	Rat
7411558	Bw133	Body weight QTL 133	13.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	4	127263297	172263297	Rat
6478778	Anxrr51	Anxiety related response QTL 51		0.25384	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)	4	126334185	171334185	Rat
631511	Pia7	Pristane induced arthritis QTL 7	4.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
1549832	Bss3	Bone structure and strength QTL 3	11		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	4	111383604	156383604	Rat
70177	Xhs1	X-ray hypersensitivity QTL 1	25.1		intestine integrity trait (VT:0010554)	post-insult time to onset of moribundity (CMO:0001896)	4	82944895	154403548	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
634347	Hcar8	Hepatocarcinoma resistance QTL 8	5.8		liver integrity trait (VT:0010547)	liver tumorous lesion area to total liver area ratio (CMO:0001075)	4	124700988	169700988	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
738031	Alc14	Alcohol consumption QTL 14	7.6	0.00003	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	174095838	Rat
1576316	Ept5	Estrogen-induced pituitary tumorigenesis QTL 5	3.8		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	4	100752691	179366077	Rat
1581566	Eae21	Experimental allergic encephalomyelitis QTL 21	6.2		body mass (VT:0001259)	maximum body weight loss to initial body weight ratio (CMO:0001400)	4	137447185	182447185	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
1578674	Bmd12	Bone mineral density QTL 12	3.8		femur mineral mass (VT:0010011)	compact volumetric bone mineral density (CMO:0001730)	4	137430611	182430611	Rat
738016	Alc16	Alcohol consumption QTL 16	3.6	0.00015	consumption behavior trait (VT:0002069)	ethanol drink intake rate to body weight ratio (CMO:0001616)	4	60916264	184426481	Rat
1358202	Gluco11	Glucose level QTL 11	2.4	0.02	adipocyte glucose uptake trait (VT:0004185)	absolute change in adipocyte glucose uptake (CMO:0000873)	4	86709649	168870974	Rat
61422	Cia13	Collagen induced arthritis QTL 13	4.5		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	134199006	168870974	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
737978	Pia23	Pristane induced arthritis QTL 23	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	123870974	168870974	Rat
61362	Oia2	Oil induced arthritis QTL 2		0.001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	140059299	184426481	Rat
2293840	Kiddil9	Kidney dilation QTL 9	2.9		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	4	113634167	149763391	Rat
631674	Iddm14	Insulin dependent diabetes mellitus QTL 14			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	4	65495851	159259805	Rat
12798519	Anxrr54	Anxiety related response QTL 54	2.54	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	116184844	161184844	Rat
70201	Gcr1	Gastric cancer resistance QTL 1	2.7		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	4	103834277	148834277	Rat
70200	Alc18	Alcohol consumption QTL 18	9.2		drinking behavior trait (VT:0001422)	ethanol intake volume to total fluid intake volume ratio (CMO:0001591)	4	57613339	151163960	Rat
12798527	Anxrr58	Anxiety related response QTL 58	4.11	0.05	locomotor behavior trait (VT:0001392)	distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)	4	121020385	148834277	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat

Markers in Region

D45913

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	4	140,515,805 - 140,515,891 (+)	MAPPER	mRatBN7.2
Rnor_6.0	4	139,672,681 - 139,672,766	NCBI	Rnor6.0
Rnor_5.0	4	204,143,883 - 204,143,968	UniSTS	Rnor5.0
RGSC_v3.4	4	143,008,459 - 143,008,544	UniSTS	RGSC3.4
Celera	4	129,205,793 - 129,205,878	UniSTS
Cytogenetic Map	4	q41	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	12	60	160	90	89	58	29	58	6	278	121	9	140	76	91	31	16	16

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001037363	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006236984	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592833	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC107902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473957	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000008879 ⟹ ENSRNOP00000008879

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	142,032,596 - 142,074,760 (+)	Ensembl
mRatBN7.2 Ensembl	4	140,476,324 - 140,518,620 (+)	Ensembl
Rnor_6.0 Ensembl	4	139,670,092 - 139,673,143 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000114168 ⟹ ENSRNOP00000082837

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	142,032,596 - 142,074,760 (+)	Ensembl
mRatBN7.2 Ensembl	4	140,476,324 - 140,518,620 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000137400 ⟹ ENSRNOP00000100669

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	142,032,041 - 142,071,526 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000151698 ⟹ ENSRNOP00000101603

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	142,032,683 - 142,074,099 (+)	Ensembl

RefSeq Acc Id:

NM_001037363 ⟹ NP_001032440

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	142,069,265 - 142,072,320 (+)	NCBI
mRatBN7.2	4	140,513,217 - 140,516,272 (+)	NCBI
Rnor_6.0	4	139,670,092 - 139,673,147 (+)	NCBI
Rnor_5.0	4	204,105,032 - 204,146,746 (+)	NCBI
RGSC_v3.4	4	143,005,870 - 143,008,925 (+)	RGD
Celera	4	129,203,204 - 129,206,259 (+)	RGD

Sequence:

show sequence

TATCTGCTTGCTGTTCTGCTTACCACTGAATAGTGTTCAGATCTTGGTCAGGAACTGGGTGTGG
TTGGCAAGCCACCATGGCCAGATTGAGCCCTGGGAAAGCAGCTTGCTGGATGGTGCTGGGTTTG
CTGATACCTTCATTAACTGAGTCTTCCATATTGAATAGTGAGTGCCCCCAGCTTTGTGTTTGTG
AAATTCGTCCTTGGTTTACCCCACAGTCCACATACAGAGAAGCCACCACTGTTGATTGTAATGA
CCTCCGCCTAACAAGGATCCCTGGCAACCTCTCTAGTGACACACAAGTGCTTCTCTTACAGAGC
AATAACATCGCCAAGACCGTGGACGAGTTGCAGCAGCTTTTCAACTTGACTGAGCTGGATTTCT
CCCAGAACAACTTTACAAACATCAAAGAGGTAGGGCTGGCAAACTTGACCCAGCTCACCACCCT
GCATCTAGAGGAAAATCAGATTTCAGAGATGACGGATTACTGTCTTCAGGACCTCAGCAACCTT
CAAGAACTCTACATCAACCATAACCAGATCAGTTCAATCTCTGCCAACGCCTTTTCAGGATTGA
AAAATCTCTTAAGGCTGCACCTGAACTCCAATAAATTGAAAGTGATCGATAGCCGCTGGTTTGA
TTCCACACCCAACCTGGAAATTCTCATGATTGGGGAAAACCCGGTGATTGGAATCTTGGACATG
AACTTCAGACCACTCTCCAACCTGAGAAGCCTAGTTTTAGCAGGAATGTACCTCACTGATATTC
CTGGAAACGCCTTGGTAGGCTTGGATAGCCTCGAGAGCCTGTCTTTCTATGACAACAAACTGAT
CAAAGTCCCTCAACTTGCCCTGCAGAAAGTTCCAAATTTGAAATTCTTAGACCTCAATAAGAAT
CCCATTCACAAAATCCAAGAAGGGGACTTTAAAAACATGCTTCGGTTGAAAGAACTAGGAATCA
ACAACATGGGAGAGCTGGTCTCAGTGGACCGCTATGCCCTGGATAACTTGCCAGAATTGACGAA
GCTCGAAGCAACCAATAACCCCAAACTGTCATACATCCACCGTTTAGCTTTCCGGAGTGTCCCG
GCTCTAGAAAGCTTAATGTTGAACAACAACGCCTTGAATGCTGTGTACCAAAAAACAGTGGAAT
CTCTTCCCAATCTGCGAGAGATCAGCATCCACAGCAATCCCCTGAGGTGTGACTGTGTCATCCA
CTGGATTAACTCCAACAAAACCAACATTCGCTTCATGGAGCCCCTCTCCATGTTCTGCGCCATG
CCACCTGAGTATAGAGGGCAGCAGGTAAAGGAGGTATTAATCCAAGACTCAAGTGAGCAGTGTC
TCCCAATGATATCACATGACACATTCCCAAATCATTTAAACATGGACATTGGCACAACACTCTT
CCTAGACTGTCGGGCCATGGCTGAGCCAGAACCAGAAATTTACTGGGTCACTCCCATTGGAAAT
AAGATAACTGTGGAAACCCTTTCAGATAAATACAAGCTGAGTAGTGAGGGCACCTTGGAGATAG
CAAATATACAGATTGAAGACTCAGGAAGGTACACATGTGTTGCCCAGAATGTCCAAGGAGCAGA
CACTCGAGTGGCCACAATCAAGGTTAATGGAACCCTTCTAGATGGTGCCCAGGTGCTGAAAATA
TACGTCAAGCAGACAGAATCTCATTCAATTTTAGTATCCTGGAAAGTCAATTCTAATGTCATGA
CATCAAACTTAAAATGGTCATCCGCCACTATGAAGATCGACAACCCTCATATAACATACACAGC
CAGGGTGCCAGTAGATGTTCACGAGTATAACCTAACACATCTGCAGCCTTCTACTGACTATGAA
GTGTGTCTCACGGTGTCCAACATCCACCAGCAGACTCAAAAGTCATGCGTCAATGTCACAACCA
AAACCGCTGCCTTCGCCCTGGACATCTCAGATCACGAAACCAGCACAGCCCTTGCTGCAGTGAT
GGGGTCCATGTTTGCAGTCATCAGTCTAGCATCCATTGCTATTTACATTGCAAAAAGGTTTAAG
AGGAAAAATTACCACCATTCCCTTAAAAAGTATATGCAAAAAACCTCATCCATCCCACTGAATG
AGCTGTACCCCCCACTCATTAACCTCTGGGAAGGTGACAGTGACAAGGACAAAGATGGCTCAGC
TGACACCAAGCCAACCCAGGTGGACACATCCAGAAGCTATTACATGTGGTAACTCAGTGGGTAT
CTTGCTTCTGGTAGTAAGGAGCACAAAGACATTTTTGCTTTATTCTGCAAAAGTAACAAGGTGA
AGACTTTTGTACTTTTGACTTTGCTAGTTGTGGCAGAGTGGAGAGGATGGATGGATATTTCAAA
GTTTTTTTAGTATAGCGTATCGCAAGGGTTTGACACAGCTGGCAGTGACTCTCAGCTTCCAGTT
TGTGTTTGGTTTTTATCCTTATCATTATTATGATTATTATTATATTATTATTATCATTATTTTA
TTTTAGTTGATGTGCTAAACTCAGTAATGCTGTCTTAACTACAATGTTCAATAAAAATGATTCA
TGACAGGTGGGGGCTCTCCTGTGCTTGACCCCTTTCTTCTGAAGCCATCAATACGAAGAACCGA
AGAGCCGAACCATGTCCTCTCAACAGCTAACATATGGTTTGGAAGCAGCATTAAATCTTTTGTA
GCAATCTGGTCTACAGACTTTTGACTCAAGCTACGACTAAATTTGCTACTTTGTTGAAAGATGT
TAGTTGACTGTACTGTAATGTTGTATCAACTGAACTGAATGTTTGCCTTTCAGCAACAACTTTC
TTTTTCCTTCCTCTTTGTTTTTTAATAGTTAAAGAGGCTTAGAACAAGCTAACAGGCAATAGAA
ATATGTATATCAGATTTTCTAATGTAATGAACTACATGTTAATTGTTACTATATTCTTTTTATC
TTTAGTAGACACTTTTAAAGAAGAAAAGATAATTTTGTTGTGTTTAACTCACCAACTTGGTGTA
TAATGAAGACAGAAGTATAATAAATTAGTTTGTTCTGATTTTTTAGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_006236984 ⟹ XP_006237046

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	142,032,805 - 142,072,320 (+)	NCBI
mRatBN7.2	4	140,476,752 - 140,520,210 (+)	NCBI
Rnor_6.0	4	139,633,310 - 139,679,730 (+)	NCBI
Rnor_5.0	4	204,105,032 - 204,146,746 (+)	NCBI

Sequence:

show sequence

CCCATCAGCTGACCGCTTTTGCTTACACCAGGTGCACGCCGGCTGCGGGGAGCACAAAGCGGGG
CGCACGGAGGGCGCGGGCAGCAAGCGGTGGAGCGAGGCGAGGCCCGTGCGCCCCGGTTTGCAGC
GCTTGCCGGGCGGGGACCCGGGCCCGCGGCGTCCTCCCAGGCAGCGGCATCCTTGCCACCGCAC
CCCAAGGCGCCTAGGGCGCCTTCCTTGAGACCCGATCCTTTGCTGCCCCGCCCTCTGCACCCCA
TTTCTTTTACCCCCTTTCTTAATCCCGCCAGTCTCTACCACGACCCCCAAGAACGCGATTTAGC
CCAGCCCCGCGCAGCAGCTGTTGCTCCTGCGGCTGTCTCGCCTTGCGTCTTGGTGCTCTGCTGG
GGGTCCCCCAAGGAGCCAGTGCGCGCTGCGGGCTGGGTGGAGGCGCTGCTCTGCCGGTCCTCAT
CCTCCGGCTGGCTGCTGCCGCTGCCACCACCACCCTCTCCGTGCGCACCCCAACACCCCTGTCA
GCCCAGCCTTAGGACACGTCTCCAGACTTTGATTTGGCCGAAGTAACTCCCGCAAGGACCTGTG
CACATGCCTGGAATTAAGTGACACGGTTCAAGGACTTCAGATTGCTTCGCGCCTCTTGGGAAGT
TCCGAAAACCCTGTCTTCGGACTCTGGGATTCTGTTCAAATGAGACTCACTTGAATGTTTACAC
TATCTGCTTGCTGTTCTGCTTACCACTGAATAGTGTTCAGATCTTGGTCAGGAACTGGGTGTGG
TTGGCAAGCCACCATGGCCAGATTGAGCCCTGGGAAAGCAGCTTGCTGGATGGTGCTGGGTTTG
CTGATACCTTCATTAACTGAGTCTTCCATATTGAATAGTGAGTGCCCCCAGCTTTGTGTTTGTG
AAATTCGTCCTTGGTTTACCCCACAGTCCACATACAGAGAAGCCACCACTGTTGATTGTAATGA
CCTCCGCCTAACAAGGATCCCTGGCAACCTCTCTAGTGACACACAAGTGCTTCTCTTACAGAGC
AATAACATCGCCAAGACCGTGGACGAGTTGCAGCAGCTTTTCAACTTGACTGAGCTGGATTTCT
CCCAGAACAACTTTACAAACATCAAAGAGGTAGGGCTGGCAAACTTGACCCAGCTCACCACCCT
GCATCTAGAGGAAAATCAGATTTCAGAGATGACGGATTACTGTCTTCAGGACCTCAGCAACCTT
CAAGAACTCTACATCAACCATAACCAGATCAGTTCAATCTCTGCCAACGCCTTTTCAGGATTGA
AAAATCTCTTAAGGCTGCACCTGAACTCCAATAAATTGAAAGTGATCGATAGCCGCTGGTTTGA
TTCCACACCCAACCTGGAAATTCTCATGATTGGGGAAAACCCGGTGATTGGAATCTTGGACATG
AACTTCAGACCACTCTCCAACCTGAGAAGCCTAGTTTTAGCAGGAATGTACCTCACTGATATTC
CTGGAAACGCCTTGGTAGGCTTGGATAGCCTCGAGAGCCTGTCTTTCTATGACAACAAACTGAT
CAAAGTCCCTCAACTTGCCCTGCAGAAAGTTCCAAATTTGAAATTCTTAGACCTCAATAAGAAT
CCCATTCACAAAATCCAAGAAGGGGACTTTAAAAACATGCTTCGGTTGAAAGAACTAGGAATCA
ACAACATGGGAGAGCTGGTCTCAGTGGACCGCTATGCCCTGGATAACTTGCCAGAATTGACGAA
GCTCGAAGCAACCAATAACCCCAAACTGTCATACATCCACCGTTTAGCTTTCCGGAGTGTCCCG
GCTCTAGAAAGCTTAATGTTGAACAACAACGCCTTGAATGCTGTGTACCAAAAAACAGTGGAAT
CTCTTCCCAATCTGCGAGAGATCAGCATCCACAGCAATCCCCTGAGGTGTGACTGTGTCATCCA
CTGGATTAACTCCAACAAAACCAACATTCGCTTCATGGAGCCCCTCTCCATGTTCTGCGCCATG
CCACCTGAGTATAGAGGGCAGCAGGTAAAGGAGGTATTAATCCAAGACTCAAGTGAGCAGTGTC
TCCCAATGATATCACATGACACATTCCCAAATCATTTAAACATGGACATTGGCACAACACTCTT
CCTAGACTGTCGGGCCATGGCTGAGCCAGAACCAGAAATTTACTGGGTCACTCCCATTGGAAAT
AAGATAACTGTGGAAACCCTTTCAGATAAATACAAGCTGAGTAGTGAGGGCACCTTGGAGATAG
CAAATATACAGATTGAAGACTCAGGAAGGTACACATGTGTTGCCCAGAATGTCCAAGGAGCAGA
CACTCGAGTGGCCACAATCAAGGTTAATGGAACCCTTCTAGATGGTGCCCAGGTGCTGAAAATA
TACGTCAAGCAGACAGAATCTCATTCAATTTTAGTATCCTGGAAAGTCAATTCTAATGTCATGA
CATCAAACTTAAAATGGTCATCCGCCACTATGAAGATCGACAACCCTCATATAACATACACAGC
CAGGGTGCCAGTAGATGTTCACGAGTATAACCTAACACATCTGCAGCCTTCTACTGACTATGAA
GTGTGTCTCACGGTGTCCAACATCCACCAGCAGACTCAAAAGTCATGCGTCAATGTCACAACCA
AAACCGCTGCCTTCGCCCTGGACATCTCAGATCACGAAACCAGCACAGCCCTTGCTGCAGTGAT
GGGGTCCATGTTTGCAGTCATCAGTCTAGCATCCATTGCTATTTACATTGCAAAAAGGTTTAAG
AGGAAAAATTACCACCATTCCCTTAAAAAGTATATGCAAAAAACCTCATCCATCCCACTGAATG
AGCTGTACCCCCCACTCATTAACCTCTGGGAAGGTGACAGTGACAAGGACAAAGATGGCTCAGC
TGACACCAAGCCAACCCAGGTGGACACATCCAGAAGCTATTACATGTGGTAACTCAGTGGGTAT
CTTGCTTCTGGTAGTAAGGAGCACAAAGACATTTTTGCTTTATTCTGCAAAAGTAACAAGGTGA
AGACTTTTGTACTTTTGACTTTGCTAGTTGTGGCAGAGTGGAGAGGATGGATGGATATTTCAAA
GTTTTTTTAGTATAGCGTATCGCAAGGGTTTGACACAGCTGGCAGTGACTCTCAGCTTCCAGTT
TGTGTTTGGTTTTTATCCTTATCATTATTATGATTATTATTATATTATTATTATCATTATTTTA
TTTTAGTTGATGTGCTAAACTCAGTAATGCTGTCTTAACTACAATGTTCAATAAAAATGATTCA
TGACAGGTGGGGGCTCTCCTGTGCTTGACCCCTTTCTTCTGAAGCCATCAATACGAAGAACCGA
AGAGCCGAACCATGTCCTCTCAACAGCTAACATATGGTTTGGAAGCAGCATTAAATCTTTTGTA
GCAATCTGGTCTACAGACTTTTGACTCAAGCTACGACTAAATTTGCTACTTTGTTGAAAGATGT
TAGTTGACTGTACTGTAATGTTGTATCAACTGAACTGAATGTTTGCCTTTCAGCAACAACTTTC
TTTTTCCTTCCTCTTTGTTTTTTAATAGTTAAAGAGGCTTAGAACAAGCTAACAGGCAATAGAA
ATATGTATATCAGATTTTCTAATGTAATGAACTACATGTTAATTGTTACTATATTCTTTTTATC
TTTAGTAGACACTTTTAAAGAAGAAAAGATAATTTTGTTGTGTTTAACTCACCAACTTGGTGTA
TAATGAAGACAGAAGTATAATAAATTAGTTTGTTCTGATTTTTTAGAACACTTGCAATAATGTA
TCATTTATTAGTCCCTGCTAGTTGCCTAGGTAATATCATTCCCACCAGTGCAAAGGACAACCAA
AGCCCATGTGTGCATGCTATCTTTTACAGTCAGGCACTAGAATCTTTTCCTTTCACTTTCTAAC
AAAAGAAGTATCCATCTTAACTAAGACAGCCTGGGTCAGCGAGATGGCTCAGTGAGGAAAGGTG
CCTACTGCCAAACCTGACCTGAATTTTATCCGCAAACCCCACATGGCAGAGGAAAAGACAGACT
TTAGCTGTCCTCTCACGGCAATACATGCTTCACGATATGCACACCCAAGTGTATGCATACTTGC
ACACACAGACAACAAACAAATTCACTGGCAAGGATAAGTTAATGGATACATTTTAATGAACAGG
ATTTCTATATTTTCAATACCACCAATAAAGGCTATTCAAGAATGTGTTTATACAAAGAAAAAGT
GCACACTACTGTAACCCAGGCAGGTGTCCATACAAAGAAAAAATACATACTCTTGTAACCCAGG
TTAAACTACTCTGTCTTTATTTTATTTTTTTATCACGCTCTGTCTTTCATTTATTTTACAGTCT
GACGTTCCCTAATGTCCTAAAAATTTATTGCCATATCCCATTTAATAGCTGTCTATGTGCTTAT
GGGGTATCAACTGCTATGGAGATGTCTTCTAGAGAAGATGGTTGATAGAAGGCAGAGTGATTTC
CTAAGGTCAGCATTTGTCATCCAAACATTACCCACAGTTTAGCTCAATTGACTGCTTCATGACT
GCACATGTGTCTGTGACGTTCAGAACAGGGGAGTTAGGTTGTCAGTGTCCTGTGGGTGTTAGAA
GGAGCAGATTACAAAGTAAAGAGAGATGACAGAAGACCCGTGTGAACATCTGCATTGATTAGAC
AGAGAAAGAAAGAAAAGCTGTGTCACAGGAGGCAGCAGCTGCTGTGGAGACGCTGCTGTATCAG
GAATGAGTAGGAGGAGACAGGTGCCAGATGAGAAGAAGAAAGGACAAGAGAACAAACAGAAAGT
CCAGAGGAGGCAGAAAGGGACAGGACTTTCATTATCAGAAGCTTTGTTTTGTGAATCACCCTTT
GTCAAATGAGCTTTGGCATTTGCAGGTGGAAGGGGGTCAGGGAAGAGAACCCCAGATTCTGCAA
GCAAACTGCACCCAAGATAGAGCCAGTATCTGAATGAGAGGCATTTCTCAGAGACTCCCTTTGC
TGATGAGAAAAACAGAGGGCACAGGGAGGCTGTGGGACTCTCAGGGAGCCTCCCCTGCCCTCCA
GCGATTCCTCTAGACCCAGTAGTCTTACAGCTCTTACCTTCTGTGCCCCTGCTTCAAACATGCA
GGTTATCCATAAATACCCATTTACCTGGAATAAAGTCTAAAACAAACGCAGCCTGGGGGAATAG
CAAGGTATCTTGCATTGCTTTACTGCCAAGTTCACCTGTGACACAGAGTGGAAGACGCTCCCTC
TGCAACCGCAGGCATTCTTGGCTACAGACATCTGAGCAGCAGATCACCTAAGTTATGAGGCAGG
TTGGCACCAAAGCAGAAGGCCTATGGCGGCTACAGTTGTAAGAAGGCATCACTTACCCAAAAAG
CCATATTTTGAGCTGGCACAGAACATGCCTACTCAGCCATTCTGAAAACAAGACAGGCACAGGG
GAATCCAAATGTTCATTGGGAGAGTATCATTTCCCAGGCCAGTTTGGAGTAATTACTTCTTTTG
CTAAAACAAACAAACAAACAAAAAACAAAAACAACAACAACAAAAAAAAAACCCACTACAACTT
ACTTCACCCTATCCATGTCACTGGGTTGGTTTTTCTCTTGATGGAAAGCAAGATGGCAGAGCAT
TCTTCTACTTAGTCAGTTTTTTCCTCAGTTCAGGCTCTTTTGGTAACTTAGGCAGCCAGTGACA
TTAGACTACAGGCTAGATCCCGATGGACAGGGGATTCCTCTGAGCTTTACCCGGGACATGGCTG
CTATAGGTCATGTACTAGTCTAATATTTTCCCTTTTGCTTCTGGTTGTCCTCTGACCTGGTTCT
CCAGGTTTATTTTTGGAGCAATTTCTTACAATAAGCATTCCCTAATCTGTTCATTTAGTTAATG
ACAAAGCAAAGTGGAGCCATGAATATAAAAAGAGACATTATGTTTGATACCACTGTTTCTAATT
TGTCTATAGCAAAAAGAATCATTAACCGGTCCTTCGTAAACAGGACCTAAGTCCATTTTTCTCA
CTGTTGGTCTCAAGACAGCACAGTTTGTGTGTTTTCTTTCTATCTTGGCGCTCACTTCCCAAGC
AGTTCCCTTCCTTCCTCACTGTTTTCACCACTCAGGAAATAAAAGCTCTTTGTGTTCCTGATAC
TGCTGGGAAACCCATATGCTCTGCCTTTTGGGACTTTAACTTCTGATACAGTCAAGGTACAACT
GAGAAATGCTTTCTCACCTCAATTCTATCTCAGCCTGTTCCCAAATTGACCTTTAAAAAGTTTA
AAACAAAAACTATGCTCAGTGTTATGATACATATGATATGTTGGTGGATAAAAATCTATAAAGT
TTAGTTCTCTCTGCTGTTTCAGGGTATGGGCTCTTTTGAAACAACCAACATGGAGAAGGAAAGA
TTATTGCAGTGTGGGCTATATTCAGGACACACACACACACACACACACACACACACACACACAC
ACACACACACAGCAGATTATCTTTCTATCAGACATCAGGGTTTTAAGAAATAAGGGGATGGAAG
GGGAAATAATGTTTTTATCCTTGTTGCTTCAGCATAAGTTCACAGAACAAAGTGAGTTTCTTGT
CTCATATTATTCATATAGAATATACCTCAAGTGAGTGTCAGCATATCTCACAGACCTTCCTGAA
CCATGGATTCTGAGAACATCCTTCTGAAACAACTAGGTAAATTGCCCATTATTCTTTCCAGTTT
ACAGTCTATAGCACAACCGTTACAGGTAGGCATCCATTAGAGGTTCACTTGCAGTTTTCTCTGT
CCAGCATTCTTCTAGGATAGAAAGGGAGGGCAGCTCTTGACTGGCAGATGAAGCATGTGGCTAA
TGACAAAGGCAGCACACAAGAGGCTCTGGTGTGATTACACTGATGAGAGTTCCATCCTGGGCCC
TGACAGAATGATCCCAAATTCCTTATAAGCTAGTGTCGTAAAAGGTGACATTTGAATGTGCCAG
AGCATATTAGTGCATCTCACTAATAGACACGGAGACATAATGAGCTCAGGGAAATTGAAGACCT
TGTCATAGTGGACAAGAATGTATAATTTAGAGCAACACCTTAGGAAAGAAAACGTGAGGGAGGT
TTGTTTTCTACGTAAGCGTCTCTGAGATTATTTACTAAAACCTCATATCCTCTAACAAGCATTT
GTGGATGTTCCTGAGAAGGTAGAACAATACTCTGAAACCAAGCAACTTCTAAGAAACAGAACTG
AGAACTTCAACTACATGTCTAAAGAGTGTAGTTGTTCAACTACCTAACTGTCCATGCTTTAATT
CAAATATATTTGGGTACCTGAAGCTGGAACGGTGGATGTGAAGACAGCAGTGCCCACCAAGGAG
GCCAGTACAGGAACTAATTTAGGACTCCAACCTGAGACAGATCGCCTTCTGAACCAACTAATTC
TAAGGGCTCGATGCCCCTTGCCTAAAATGCTTGGTTAGCACCAGAAATGTTTGAACTTTCAATT
TGTTTGGCTTTTAAAAAAATTATACAACAATGATTTATACTGGATGAGCATGCTTAACCTGAGC
CACTTATAAAAGCTTGAGCATTCTTTCAGTGCTCAAAGCACTCTAATGTTACAAAAAGTTTCAT
TCTGCATTTTGGATCTGAGGGTCAGTGTGTTTTTTTTTAAAGTATTACAAATGTATGAGGCACC
TGACTAGACACATGCACTCTCTCAAGTACAGGTGAGAATGTGCAATGCTTAATGCAAATACTGT
GCCTTTTTATAGGACAGGCAAATAGCTGTGGAGTTTGGTGTCCACTGAGACCTAGAACCACTTC
CCGAAGGGCATCAAAGTGAGCCAATGGGAAAAGATCAAGACATACTCAAAGGCTTGTGATACTA
ATTTCATAAGAAAAGAAATGGGAGAAACAGAAGCAGCAGAGGTAGGGGGATGTGACAGAAATTA
GAGCAAGAGACGTGGGCAATGCAAATAAAAGTAAATTCTGATAGTGGGTACCTGACCTTTGGTA
TCTGTATCATGTGGAATCTTCCAACAATTGGAAGAAAATGGTCATTTCCTCATAATTTTTATAT
GAGGAAAGATACTCAGCTCAACCTTCATAAGTGACAAGGCCAAAGTTCCCACCTTCCATGTTAG
CATCAAGGGTCCATAACTGCCTCTCTCTAGCTATGAAGCACCAGAGTCTGAGCTCCGGCATCTC
ATTTGCATGACTGAGTTTGTAAAATGTAAAGTAAGTTCACGATCTTGAAAAGAATTTCCCACAA
AAGCTCCCTTGAAGTGGTATTTCATGCCACAGAAAAATAAGGAAAGGCAGGATCGTTCCATGAG
TAAAGATGCTTATCCTGGAAACCTGGCTACCTGAGTTCAGTCCCTAGAACCCATGTAAAGAGAG
AGAACAACACAAAGTTATCCCATATCCTACACACATATGCTGTGGTGCATGCATTCGTGTGCAC
ACATACTACGTGTGGTTGATAACATCATCCAGGGCAAACAACTGTTCTGCCTTTTGTCATCTGA
TCTTTCTGGACAACCCTAAAGAGCATAAACTCCCTTGGGAACTCTAGGGAAAATTTTATACCAG
CAAAGTAGCTTCTGCCTATAATCCTGGAACACAATGAGACCCTGAGGGAAAAGTTTTGTGATCT
CAGCGCATTGGATTTTTAAACTCTTATCACCCTTTCTGCCTTTTAGAGGAAAATTGCTTGTAAT
ATCTCCCACATCATTGATGAAACTACGAGCCTTAAGCTACAGGAATTTTTGTTTAAAATCCCAC
AGACTCATCAATAACACTTGATTTCACCGATTTTATTGTAACTGGTGTAGGGTATTGGTCTCCA
CTATAAGGTAAATCTTTTCTGCAACTTATTTAAATTTGATACTGTCTTTCACTTACTTAAGCAT
GTGTATGCACGGCACACAGGTGGAAGTCAGGGGACAACTTGCAGGAGTTCTTTTTCTCCTTTCA
TGATGTGGGTCCTGGGAGTCGAAACCATTTAGCAGGTCTCTGTTTCTTCTCATTATAGCTATAG
CATGGTCACTGTAGAGAACATATTAATAATAATAGCATGTTATTCCATGGCTCAGAAATGAGCA
TTTGGTGGCATGCTTATTTTCTCTAAACATGAGTATGTACATCTATAAGTACGTATACACGTAG
AGTTGTAAAATATGCACTCATAGGAATATAAAATTAGAATCATAGCATGGTGTCATATACTTCT
GCTGTTACACAAAAAGCAAGCATCTTTTCATATAACAGATCTCTTGTAAAGCAGAGTATTAATG
GTTATAGGCATCTCATACATACATATAGCATACAGACAGACAGACATATAGATAGACACACACA
CATACACACACATACACACACACACACACACACACACACACACACACACACACACACGAACAAT
TCCTTCCCCTGGCACTAAGTCCAGAGATGCGTCTCACATGAGGATCTAGGTGGATGAAAATGAA
TCTATGCTTCCCGCATCCTTCAGTGGCAGTTGTGGAGAAAGATGTCTACCTAAAGGAAGATGAA
ATACCATACAGAACAAGATGCAGCCTGATCAAACTACAAACTGCACTACTGAAACTCAGAACTG
AAACTTGTAGTGAAAATCCCATTAAGAAACATCCAGGGGCAGGACTGGGAACGCACAACCATGT
GCTCTCTTCAGCTTCTGCCTTTGCCACACGCAGCTGAGATTATCATCTTGGGCTCACAATTTAA
GAGGTTTCAGTCTGTTCCTCTGGCTGCAGCTTTCCTGGCCCTAAGGCAGAACCTGGTGAGGAGG
GTTGTGTTATAGAAGAAACCTGAGAGCAGGAAAACTGTAGAGGAGAGAGCATGGCCCTTCTATT
TCCTTAGAAAGGTGAATGCATCTTCTTTTAGCTAGGTCCTGCCTCCCGAAGGCTCCACCATCTC
CCAATAGTGCCACTAACTGGGGACCAAGCCTTTGCATGAGGACCTTTGGAAGACTATTAAGGTC
TAAACTCTAACTCTGATCAAGGACATAAGGTGAACTTGGAGATTCTGTTCGCGTTCTCAAGAGG
GAGAAGAAAGGACTCGAAGTCGAGAGTGGCTAACACGGGAGATAATGGTAAAATTATAACAAGA
TTTTGTGTGGAGATGAAGAGGAGCAGGGTCATAATGACTCTGGTCCCAGGTGAACCTCTGCTTC
CTCTTTCCCATCCATCATAATCACTGGTGGCATGCCCTCCTAGTGAGAAAAGAGATGCTTGCAA
AAGCAGTTTGATTGACCTTTCTAAGCCCTAGAGCATCCGCCTGGAATCTCTGCTGTGGTAATAT
GTAAAACACAAGTATTAAACAGATGTGAGGCTTTTCTAA

hide sequence

RefSeq Acc Id:

XM_017592833 ⟹ XP_017448322

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	142,032,808 - 142,072,320 (+)	NCBI
mRatBN7.2	4	140,476,752 - 140,520,210 (+)	NCBI
Rnor_6.0	4	139,633,310 - 139,679,730 (+)	NCBI

Sequence:

show sequence

CCCATCAGCTGACCGCTTTTGCTTACACCAGGTGCACGCCGGCTGCGGGGAGCACAAAGCGGGG
CGCACGGAGGGCGCGGGCAGCAAGCGGTGGAGCGAGGCGAGGCCCGTGCGCCCCGGTTTGCAGC
GCTTGCCGGGCGGGGACCCGGGCCCGCGGCGTCCTCCCAGGCAGCGGCATCCTTGCCACCGCAC
CCCAAGGCGCCTAGGGCGCCTTCCTTGAGACCCGATCCTTTGCTGCCCCGCCCTCTGCACCCCA
TTTCTTTTACCCCCTTTCTTAATCCCGCCAGTCTCTACCACGACCCCCAAGAACGCGATTTAGC
CCAGCCCCGCGCAGCAGCTGTTGCTCCTGCGGCTGTCTCGCCTTGCGTCTTGGTGCTCTGCTGG
GGGTCCCCCAAGGAGCCAGTGCGCGCTGCGGGCTGGGTGGAGGCGCTGCTCTGCCGGTCCTCAT
CCTCCGGCTGGCTGCTGCCGCTGCCACCACCACCCTCTCCGTGCGCACCCCAACACCCCTGTCA
GCCCAGCCTTAGGTTCTCACAACCTGCACATGAGGCATGACTACACGTGAGCTATAACTGTGTC
CTGCTAACAGAGAAGGAAGCCAAGATCCAGGAAAGTGAGACACGTCTCCAGACTTTGATTTGGC
CGAAGTAACTCCCGCAAGGACCTGTGCACATGCCTGGAATTAAGTGACACGGTTCAAGGACTTC
AGATTGCTTCGCGCCTCTTGGGAAGTTCCGAAAACCCTGTCTTCGGACTCTGGGATTCTGTTCA
AATGAGACTCACTTGAATGTTTACACTATCTGCTTGCTGTTCTGCTTACCACTGAATAGTGTTC
AGATCTTGGTCAGGAACTGGGTGTGGTTGGCAAGCCACCATGGCCAGATTGAGCCCTGGGAAAG
CAGCTTGCTGGATGGTGCTGGGTTTGCTGATACCTTCATTAACTGAGTCTTCCATATTGAATAG
TGAGTGCCCCCAGCTTTGTGTTTGTGAAATTCGTCCTTGGTTTACCCCACAGTCCACATACAGA
GAAGCCACCACTGTTGATTGTAATGACCTCCGCCTAACAAGGATCCCTGGCAACCTCTCTAGTG
ACACACAAGTGCTTCTCTTACAGAGCAATAACATCGCCAAGACCGTGGACGAGTTGCAGCAGCT
TTTCAACTTGACTGAGCTGGATTTCTCCCAGAACAACTTTACAAACATCAAAGAGGTAGGGCTG
GCAAACTTGACCCAGCTCACCACCCTGCATCTAGAGGAAAATCAGATTTCAGAGATGACGGATT
ACTGTCTTCAGGACCTCAGCAACCTTCAAGAACTCTACATCAACCATAACCAGATCAGTTCAAT
CTCTGCCAACGCCTTTTCAGGATTGAAAAATCTCTTAAGGCTGCACCTGAACTCCAATAAATTG
AAAGTGATCGATAGCCGCTGGTTTGATTCCACACCCAACCTGGAAATTCTCATGATTGGGGAAA
ACCCGGTGATTGGAATCTTGGACATGAACTTCAGACCACTCTCCAACCTGAGAAGCCTAGTTTT
AGCAGGAATGTACCTCACTGATATTCCTGGAAACGCCTTGGTAGGCTTGGATAGCCTCGAGAGC
CTGTCTTTCTATGACAACAAACTGATCAAAGTCCCTCAACTTGCCCTGCAGAAAGTTCCAAATT
TGAAATTCTTAGACCTCAATAAGAATCCCATTCACAAAATCCAAGAAGGGGACTTTAAAAACAT
GCTTCGGTTGAAAGAACTAGGAATCAACAACATGGGAGAGCTGGTCTCAGTGGACCGCTATGCC
CTGGATAACTTGCCAGAATTGACGAAGCTCGAAGCAACCAATAACCCCAAACTGTCATACATCC
ACCGTTTAGCTTTCCGGAGTGTCCCGGCTCTAGAAAGCTTAATGTTGAACAACAACGCCTTGAA
TGCTGTGTACCAAAAAACAGTGGAATCTCTTCCCAATCTGCGAGAGATCAGCATCCACAGCAAT
CCCCTGAGGTGTGACTGTGTCATCCACTGGATTAACTCCAACAAAACCAACATTCGCTTCATGG
AGCCCCTCTCCATGTTCTGCGCCATGCCACCTGAGTATAGAGGGCAGCAGGTAAAGGAGGTATT
AATCCAAGACTCAAGTGAGCAGTGTCTCCCAATGATATCACATGACACATTCCCAAATCATTTA
AACATGGACATTGGCACAACACTCTTCCTAGACTGTCGGGCCATGGCTGAGCCAGAACCAGAAA
TTTACTGGGTCACTCCCATTGGAAATAAGATAACTGTGGAAACCCTTTCAGATAAATACAAGCT
GAGTAGTGAGGGCACCTTGGAGATAGCAAATATACAGATTGAAGACTCAGGAAGGTACACATGT
GTTGCCCAGAATGTCCAAGGAGCAGACACTCGAGTGGCCACAATCAAGGTTAATGGAACCCTTC
TAGATGGTGCCCAGGTGCTGAAAATATACGTCAAGCAGACAGAATCTCATTCAATTTTAGTATC
CTGGAAAGTCAATTCTAATGTCATGACATCAAACTTAAAATGGTCATCCGCCACTATGAAGATC
GACAACCCTCATATAACATACACAGCCAGGGTGCCAGTAGATGTTCACGAGTATAACCTAACAC
ATCTGCAGCCTTCTACTGACTATGAAGTGTGTCTCACGGTGTCCAACATCCACCAGCAGACTCA
AAAGTCATGCGTCAATGTCACAACCAAAACCGCTGCCTTCGCCCTGGACATCTCAGATCACGAA
ACCAGCACAGCCCTTGCTGCAGTGATGGGGTCCATGTTTGCAGTCATCAGTCTAGCATCCATTG
CTATTTACATTGCAAAAAGGTTTAAGAGGAAAAATTACCACCATTCCCTTAAAAAGTATATGCA
AAAAACCTCATCCATCCCACTGAATGAGCTGTACCCCCCACTCATTAACCTCTGGGAAGGTGAC
AGTGACAAGGACAAAGATGGCTCAGCTGACACCAAGCCAACCCAGGTGGACACATCCAGAAGCT
ATTACATGTGGTAACTCAGTGGGTATCTTGCTTCTGGTAGTAAGGAGCACAAAGACATTTTTGC
TTTATTCTGCAAAAGTAACAAGGTGAAGACTTTTGTACTTTTGACTTTGCTAGTTGTGGCAGAG
TGGAGAGGATGGATGGATATTTCAAAGTTTTTTTAGTATAGCGTATCGCAAGGGTTTGACACAG
CTGGCAGTGACTCTCAGCTTCCAGTTTGTGTTTGGTTTTTATCCTTATCATTATTATGATTATT
ATTATATTATTATTATCATTATTTTATTTTAGTTGATGTGCTAAACTCAGTAATGCTGTCTTAA
CTACAATGTTCAATAAAAATGATTCATGACAGGTGGGGGCTCTCCTGTGCTTGACCCCTTTCTT
CTGAAGCCATCAATACGAAGAACCGAAGAGCCGAACCATGTCCTCTCAACAGCTAACATATGGT
TTGGAAGCAGCATTAAATCTTTTGTAGCAATCTGGTCTACAGACTTTTGACTCAAGCTACGACT
AAATTTGCTACTTTGTTGAAAGATGTTAGTTGACTGTACTGTAATGTTGTATCAACTGAACTGA
ATGTTTGCCTTTCAGCAACAACTTTCTTTTTCCTTCCTCTTTGTTTTTTAATAGTTAAAGAGGC
TTAGAACAAGCTAACAGGCAATAGAAATATGTATATCAGATTTTCTAATGTAATGAACTACATG
TTAATTGTTACTATATTCTTTTTATCTTTAGTAGACACTTTTAAAGAAGAAAAGATAATTTTGT
TGTGTTTAACTCACCAACTTGGTGTATAATGAAGACAGAAGTATAATAAATTAGTTTGTTCTGA
TTTTTTAGAACACTTGCAATAATGTATCATTTATTAGTCCCTGCTAGTTGCCTAGGTAATATCA
TTCCCACCAGTGCAAAGGACAACCAAAGCCCATGTGTGCATGCTATCTTTTACAGTCAGGCACT
AGAATCTTTTCCTTTCACTTTCTAACAAAAGAAGTATCCATCTTAACTAAGACAGCCTGGGTCA
GCGAGATGGCTCAGTGAGGAAAGGTGCCTACTGCCAAACCTGACCTGAATTTTATCCGCAAACC
CCACATGGCAGAGGAAAAGACAGACTTTAGCTGTCCTCTCACGGCAATACATGCTTCACGATAT
GCACACCCAAGTGTATGCATACTTGCACACACAGACAACAAACAAATTCACTGGCAAGGATAAG
TTAATGGATACATTTTAATGAACAGGATTTCTATATTTTCAATACCACCAATAAAGGCTATTCA
AGAATGTGTTTATACAAAGAAAAAGTGCACACTACTGTAACCCAGGCAGGTGTCCATACAAAGA
AAAAATACATACTCTTGTAACCCAGGTTAAACTACTCTGTCTTTATTTTATTTTTTTATCACGC
TCTGTCTTTCATTTATTTTACAGTCTGACGTTCCCTAATGTCCTAAAAATTTATTGCCATATCC
CATTTAATAGCTGTCTATGTGCTTATGGGGTATCAACTGCTATGGAGATGTCTTCTAGAGAAGA
TGGTTGATAGAAGGCAGAGTGATTTCCTAAGGTCAGCATTTGTCATCCAAACATTACCCACAGT
TTAGCTCAATTGACTGCTTCATGACTGCACATGTGTCTGTGACGTTCAGAACAGGGGAGTTAGG
TTGTCAGTGTCCTGTGGGTGTTAGAAGGAGCAGATTACAAAGTAAAGAGAGATGACAGAAGACC
CGTGTGAACATCTGCATTGATTAGACAGAGAAAGAAAGAAAAGCTGTGTCACAGGAGGCAGCAG
CTGCTGTGGAGACGCTGCTGTATCAGGAATGAGTAGGAGGAGACAGGTGCCAGATGAGAAGAAG
AAAGGACAAGAGAACAAACAGAAAGTCCAGAGGAGGCAGAAAGGGACAGGACTTTCATTATCAG
AAGCTTTGTTTTGTGAATCACCCTTTGTCAAATGAGCTTTGGCATTTGCAGGTGGAAGGGGGTC
AGGGAAGAGAACCCCAGATTCTGCAAGCAAACTGCACCCAAGATAGAGCCAGTATCTGAATGAG
AGGCATTTCTCAGAGACTCCCTTTGCTGATGAGAAAAACAGAGGGCACAGGGAGGCTGTGGGAC
TCTCAGGGAGCCTCCCCTGCCCTCCAGCGATTCCTCTAGACCCAGTAGTCTTACAGCTCTTACC
TTCTGTGCCCCTGCTTCAAACATGCAGGTTATCCATAAATACCCATTTACCTGGAATAAAGTCT
AAAACAAACGCAGCCTGGGGGAATAGCAAGGTATCTTGCATTGCTTTACTGCCAAGTTCACCTG
TGACACAGAGTGGAAGACGCTCCCTCTGCAACCGCAGGCATTCTTGGCTACAGACATCTGAGCA
GCAGATCACCTAAGTTATGAGGCAGGTTGGCACCAAAGCAGAAGGCCTATGGCGGCTACAGTTG
TAAGAAGGCATCACTTACCCAAAAAGCCATATTTTGAGCTGGCACAGAACATGCCTACTCAGCC
ATTCTGAAAACAAGACAGGCACAGGGGAATCCAAATGTTCATTGGGAGAGTATCATTTCCCAGG
CCAGTTTGGAGTAATTACTTCTTTTGCTAAAACAAACAAACAAACAAAAAACAAAAACAACAAC
AACAAAAAAAAAACCCACTACAACTTACTTCACCCTATCCATGTCACTGGGTTGGTTTTTCTCT
TGATGGAAAGCAAGATGGCAGAGCATTCTTCTACTTAGTCAGTTTTTTCCTCAGTTCAGGCTCT
TTTGGTAACTTAGGCAGCCAGTGACATTAGACTACAGGCTAGATCCCGATGGACAGGGGATTCC
TCTGAGCTTTACCCGGGACATGGCTGCTATAGGTCATGTACTAGTCTAATATTTTCCCTTTTGC
TTCTGGTTGTCCTCTGACCTGGTTCTCCAGGTTTATTTTTGGAGCAATTTCTTACAATAAGCAT
TCCCTAATCTGTTCATTTAGTTAATGACAAAGCAAAGTGGAGCCATGAATATAAAAAGAGACAT
TATGTTTGATACCACTGTTTCTAATTTGTCTATAGCAAAAAGAATCATTAACCGGTCCTTCGTA
AACAGGACCTAAGTCCATTTTTCTCACTGTTGGTCTCAAGACAGCACAGTTTGTGTGTTTTCTT
TCTATCTTGGCGCTCACTTCCCAAGCAGTTCCCTTCCTTCCTCACTGTTTTCACCACTCAGGAA
ATAAAAGCTCTTTGTGTTCCTGATACTGCTGGGAAACCCATATGCTCTGCCTTTTGGGACTTTA
ACTTCTGATACAGTCAAGGTACAACTGAGAAATGCTTTCTCACCTCAATTCTATCTCAGCCTGT
TCCCAAATTGACCTTTAAAAAGTTTAAAACAAAAACTATGCTCAGTGTTATGATACATATGATA
TGTTGGTGGATAAAAATCTATAAAGTTTAGTTCTCTCTGCTGTTTCAGGGTATGGGCTCTTTTG
AAACAACCAACATGGAGAAGGAAAGATTATTGCAGTGTGGGCTATATTCAGGACACACACACAC
ACACACACACACACACACACACACACACACACACACAGCAGATTATCTTTCTATCAGACATCAG
GGTTTTAAGAAATAAGGGGATGGAAGGGGAAATAATGTTTTTATCCTTGTTGCTTCAGCATAAG
TTCACAGAACAAAGTGAGTTTCTTGTCTCATATTATTCATATAGAATATACCTCAAGTGAGTGT
CAGCATATCTCACAGACCTTCCTGAACCATGGATTCTGAGAACATCCTTCTGAAACAACTAGGT
AAATTGCCCATTATTCTTTCCAGTTTACAGTCTATAGCACAACCGTTACAGGTAGGCATCCATT
AGAGGTTCACTTGCAGTTTTCTCTGTCCAGCATTCTTCTAGGATAGAAAGGGAGGGCAGCTCTT
GACTGGCAGATGAAGCATGTGGCTAATGACAAAGGCAGCACACAAGAGGCTCTGGTGTGATTAC
ACTGATGAGAGTTCCATCCTGGGCCCTGACAGAATGATCCCAAATTCCTTATAAGCTAGTGTCG
TAAAAGGTGACATTTGAATGTGCCAGAGCATATTAGTGCATCTCACTAATAGACACGGAGACAT
AATGAGCTCAGGGAAATTGAAGACCTTGTCATAGTGGACAAGAATGTATAATTTAGAGCAACAC
CTTAGGAAAGAAAACGTGAGGGAGGTTTGTTTTCTACGTAAGCGTCTCTGAGATTATTTACTAA
AACCTCATATCCTCTAACAAGCATTTGTGGATGTTCCTGAGAAGGTAGAACAATACTCTGAAAC
CAAGCAACTTCTAAGAAACAGAACTGAGAACTTCAACTACATGTCTAAAGAGTGTAGTTGTTCA
ACTACCTAACTGTCCATGCTTTAATTCAAATATATTTGGGTACCTGAAGCTGGAACGGTGGATG
TGAAGACAGCAGTGCCCACCAAGGAGGCCAGTACAGGAACTAATTTAGGACTCCAACCTGAGAC
AGATCGCCTTCTGAACCAACTAATTCTAAGGGCTCGATGCCCCTTGCCTAAAATGCTTGGTTAG
CACCAGAAATGTTTGAACTTTCAATTTGTTTGGCTTTTAAAAAAATTATACAACAATGATTTAT
ACTGGATGAGCATGCTTAACCTGAGCCACTTATAAAAGCTTGAGCATTCTTTCAGTGCTCAAAG
CACTCTAATGTTACAAAAAGTTTCATTCTGCATTTTGGATCTGAGGGTCAGTGTGTTTTTTTTT
AAAGTATTACAAATGTATGAGGCACCTGACTAGACACATGCACTCTCTCAAGTACAGGTGAGAA
TGTGCAATGCTTAATGCAAATACTGTGCCTTTTTATAGGACAGGCAAATAGCTGTGGAGTTTGG
TGTCCACTGAGACCTAGAACCACTTCCCGAAGGGCATCAAAGTGAGCCAATGGGAAAAGATCAA
GACATACTCAAAGGCTTGTGATACTAATTTCATAAGAAAAGAAATGGGAGAAACAGAAGCAGCA
GAGGTAGGGGGATGTGACAGAAATTAGAGCAAGAGACGTGGGCAATGCAAATAAAAGTAAATTC
TGATAGTGGGTACCTGACCTTTGGTATCTGTATCATGTGGAATCTTCCAACAATTGGAAGAAAA
TGGTCATTTCCTCATAATTTTTATATGAGGAAAGATACTCAGCTCAACCTTCATAAGTGACAAG
GCCAAAGTTCCCACCTTCCATGTTAGCATCAAGGGTCCATAACTGCCTCTCTCTAGCTATGAAG
CACCAGAGTCTGAGCTCCGGCATCTCATTTGCATGACTGAGTTTGTAAAATGTAAAGTAAGTTC
ACGATCTTGAAAAGAATTTCCCACAAAAGCTCCCTTGAAGTGGTATTTCATGCCACAGAAAAAT
AAGGAAAGGCAGGATCGTTCCATGAGTAAAGATGCTTATCCTGGAAACCTGGCTACCTGAGTTC
AGTCCCTAGAACCCATGTAAAGAGAGAGAACAACACAAAGTTATCCCATATCCTACACACATAT
GCTGTGGTGCATGCATTCGTGTGCACACATACTACGTGTGGTTGATAACATCATCCAGGGCAAA
CAACTGTTCTGCCTTTTGTCATCTGATCTTTCTGGACAACCCTAAAGAGCATAAACTCCCTTGG
GAACTCTAGGGAAAATTTTATACCAGCAAAGTAGCTTCTGCCTATAATCCTGGAACACAATGAG
ACCCTGAGGGAAAAGTTTTGTGATCTCAGCGCATTGGATTTTTAAACTCTTATCACCCTTTCTG
CCTTTTAGAGGAAAATTGCTTGTAATATCTCCCACATCATTGATGAAACTACGAGCCTTAAGCT
ACAGGAATTTTTGTTTAAAATCCCACAGACTCATCAATAACACTTGATTTCACCGATTTTATTG
TAACTGGTGTAGGGTATTGGTCTCCACTATAAGGTAAATCTTTTCTGCAACTTATTTAAATTTG
ATACTGTCTTTCACTTACTTAAGCATGTGTATGCACGGCACACAGGTGGAAGTCAGGGGACAAC
TTGCAGGAGTTCTTTTTCTCCTTTCATGATGTGGGTCCTGGGAGTCGAAACCATTTAGCAGGTC
TCTGTTTCTTCTCATTATAGCTATAGCATGGTCACTGTAGAGAACATATTAATAATAATAGCAT
GTTATTCCATGGCTCAGAAATGAGCATTTGGTGGCATGCTTATTTTCTCTAAACATGAGTATGT
ACATCTATAAGTACGTATACACGTAGAGTTGTAAAATATGCACTCATAGGAATATAAAATTAGA
ATCATAGCATGGTGTCATATACTTCTGCTGTTACACAAAAAGCAAGCATCTTTTCATATAACAG
ATCTCTTGTAAAGCAGAGTATTAATGGTTATAGGCATCTCATACATACATATAGCATACAGACA
GACAGACATATAGATAGACACACACACATACACACACATACACACACACACACACACACACACA
CACACACACACACACACACGAACAATTCCTTCCCCTGGCACTAAGTCCAGAGATGCGTCTCACA
TGAGGATCTAGGTGGATGAAAATGAATCTATGCTTCCCGCATCCTTCAGTGGCAGTTGTGGAGA
AAGATGTCTACCTAAAGGAAGATGAAATACCATACAGAACAAGATGCAGCCTGATCAAACTACA
AACTGCACTACTGAAACTCAGAACTGAAACTTGTAGTGAAAATCCCATTAAGAAACATCCAGGG
GCAGGACTGGGAACGCACAACCATGTGCTCTCTTCAGCTTCTGCCTTTGCCACACGCAGCTGAG
ATTATCATCTTGGGCTCACAATTTAAGAGGTTTCAGTCTGTTCCTCTGGCTGCAGCTTTCCTGG
CCCTAAGGCAGAACCTGGTGAGGAGGGTTGTGTTATAGAAGAAACCTGAGAGCAGGAAAACTGT
AGAGGAGAGAGCATGGCCCTTCTATTTCCTTAGAAAGGTGAATGCATCTTCTTTTAGCTAGGTC
CTGCCTCCCGAAGGCTCCACCATCTCCCAATAGTGCCACTAACTGGGGACCAAGCCTTTGCATG
AGGACCTTTGGAAGACTATTAAGGTCTAAACTCTAACTCTGATCAAGGACATAAGGTGAACTTG
GAGATTCTGTTCGCGTTCTCAAGAGGGAGAAGAAAGGACTCGAAGTCGAGAGTGGCTAACACGG
GAGATAATGGTAAAATTATAACAAGATTTTGTGTGGAGATGAAGAGGAGCAGGGTCATAATGAC
TCTGGTCCCAGGTGAACCTCTGCTTCCTCTTTCCCATCCATCATAATCACTGGTGGCATGCCCT
CCTAGTGAGAAAAGAGATGCTTGCAAAAGCAGTTTGATTGACCTTTCTAAGCCCTAGAGCATCC
GCCTGGAATCTCTGCTGTGGTAATATGTAAAACACAAGTATTAAACAGATGTGAGGCTTTTCTA
A

hide sequence

Protein Sequences


Protein RefSeqs	NP_001032440	(Get FASTA)	NCBI Sequence Viewer
	XP_006237046	(Get FASTA)	NCBI Sequence Viewer
	XP_017448322	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI07903	(Get FASTA)	NCBI Sequence Viewer
	EDL91472	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000008879
	ENSRNOP00000008879.4
	ENSRNOP00000082837
	ENSRNOP00000082837.1
GenBank Protein	Q32Q07	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001032440 ⟸ NM_001037363
- Peptide Label:	precursor
- UniProtKB:	Q32Q07 (UniProtKB/Swiss-Prot), A6IBK4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARLSPGKAACWMVLGLLIPSLTESSILNSECPQLCVCEIRPWFTPQSTYREATTVDCNDLRLT RIPGNLSSDTQVLLLQSNNIAKTVDELQQLFNLTELDFSQNNFTNIKEVGLANLTQLTTLHLEE NQISEMTDYCLQDLSNLQELYINHNQISSISANAFSGLKNLLRLHLNSNKLKVIDSRWFDSTPN LEILMIGENPVIGILDMNFRPLSNLRSLVLAGMYLTDIPGNALVGLDSLESLSFYDNKLIKVPQ LALQKVPNLKFLDLNKNPIHKIQEGDFKNMLRLKELGINNMGELVSVDRYALDNLPELTKLEAT NNPKLSYIHRLAFRSVPALESLMLNNNALNAVYQKTVESLPNLREISIHSNPLRCDCVIHWINS NKTNIRFMEPLSMFCAMPPEYRGQQVKEVLIQDSSEQCLPMISHDTFPNHLNMDIGTTLFLDCR AMAEPEPEIYWVTPIGNKITVETLSDKYKLSSEGTLEIANIQIEDSGRYTCVAQNVQGADTRVA TIKVNGTLLDGAQVLKIYVKQTESHSILVSWKVNSNVMTSNLKWSSATMKIDNPHITYTARVPV DVHEYNLTHLQPSTDYEVCLTVSNIHQQTQKSCVNVTTKTAAFALDISDHETSTALAAVMGSMF AVISLASIAIYIAKRFKRKNYHHSLKKYMQKTSSIPLNELYPPLINLWEGDSDKDKDGSADTKP TQVDTSRSYYMW hide sequence

RefSeq Acc Id:	XP_006237046 ⟸ XM_006236984
- Peptide Label:	isoform X1
- UniProtKB:	Q32Q07 (UniProtKB/Swiss-Prot), A6IBK4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARLSPGKAACWMVLGLLIPSLTESSILNSECPQLCVCEIRPWFTPQSTYREATTVDCNDLRLT RIPGNLSSDTQVLLLQSNNIAKTVDELQQLFNLTELDFSQNNFTNIKEVGLANLTQLTTLHLEE NQISEMTDYCLQDLSNLQELYINHNQISSISANAFSGLKNLLRLHLNSNKLKVIDSRWFDSTPN LEILMIGENPVIGILDMNFRPLSNLRSLVLAGMYLTDIPGNALVGLDSLESLSFYDNKLIKVPQ LALQKVPNLKFLDLNKNPIHKIQEGDFKNMLRLKELGINNMGELVSVDRYALDNLPELTKLEAT NNPKLSYIHRLAFRSVPALESLMLNNNALNAVYQKTVESLPNLREISIHSNPLRCDCVIHWINS NKTNIRFMEPLSMFCAMPPEYRGQQVKEVLIQDSSEQCLPMISHDTFPNHLNMDIGTTLFLDCR AMAEPEPEIYWVTPIGNKITVETLSDKYKLSSEGTLEIANIQIEDSGRYTCVAQNVQGADTRVA TIKVNGTLLDGAQVLKIYVKQTESHSILVSWKVNSNVMTSNLKWSSATMKIDNPHITYTARVPV DVHEYNLTHLQPSTDYEVCLTVSNIHQQTQKSCVNVTTKTAAFALDISDHETSTALAAVMGSMF AVISLASIAIYIAKRFKRKNYHHSLKKYMQKTSSIPLNELYPPLINLWEGDSDKDKDGSADTKP TQVDTSRSYYMW hide sequence

RefSeq Acc Id:	XP_017448322 ⟸ XM_017592833
- Peptide Label:	isoform X1
- UniProtKB:	Q32Q07 (UniProtKB/Swiss-Prot), A6IBK4 (UniProtKB/TrEMBL)
- Sequence:	show sequence MARLSPGKAACWMVLGLLIPSLTESSILNSECPQLCVCEIRPWFTPQSTYREATTVDCNDLRLT RIPGNLSSDTQVLLLQSNNIAKTVDELQQLFNLTELDFSQNNFTNIKEVGLANLTQLTTLHLEE NQISEMTDYCLQDLSNLQELYINHNQISSISANAFSGLKNLLRLHLNSNKLKVIDSRWFDSTPN LEILMIGENPVIGILDMNFRPLSNLRSLVLAGMYLTDIPGNALVGLDSLESLSFYDNKLIKVPQ LALQKVPNLKFLDLNKNPIHKIQEGDFKNMLRLKELGINNMGELVSVDRYALDNLPELTKLEAT NNPKLSYIHRLAFRSVPALESLMLNNNALNAVYQKTVESLPNLREISIHSNPLRCDCVIHWINS NKTNIRFMEPLSMFCAMPPEYRGQQVKEVLIQDSSEQCLPMISHDTFPNHLNMDIGTTLFLDCR AMAEPEPEIYWVTPIGNKITVETLSDKYKLSSEGTLEIANIQIEDSGRYTCVAQNVQGADTRVA TIKVNGTLLDGAQVLKIYVKQTESHSILVSWKVNSNVMTSNLKWSSATMKIDNPHITYTARVPV DVHEYNLTHLQPSTDYEVCLTVSNIHQQTQKSCVNVTTKTAAFALDISDHETSTALAAVMGSMF AVISLASIAIYIAKRFKRKNYHHSLKKYMQKTSSIPLNELYPPLINLWEGDSDKDKDGSADTKP TQVDTSRSYYMW hide sequence

Ensembl Acc Id:

ENSRNOP00000008879 ⟸ ENSRNOT00000008879

Ensembl Acc Id:

ENSRNOP00000082837 ⟸ ENSRNOT00000114168

Ensembl Acc Id:

ENSRNOP00000101603 ⟸ ENSRNOT00000151698

Ensembl Acc Id:

ENSRNOP00000100669 ⟸ ENSRNOT00000137400

Protein Domains

Fibronectin type-III Ig-like Ig-like C2-type LRRCT LRRNT

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q32Q07-F1-model_v2	AlphaFold	Q32Q07	1-716	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564145	AgrOrtholog
BioCyc Gene	G2FUF-43460	BioCyc
Ensembl Genes	ENSRNOG00000006802	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000008879	ENTREZGENE
	ENSRNOT00000008879.6	UniProtKB/Swiss-Prot
	ENSRNOT00000114168	ENTREZGENE
	ENSRNOT00000114168.1	UniProtKB/Swiss-Prot
Gene3D-CATH	2.60.40.10	UniProtKB/Swiss-Prot
	3.80.10.10	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7109029	IMAGE-MGC_LOAD
InterPro	Cys-rich_flank_reg_C	UniProtKB/Swiss-Prot
	FN3_dom	UniProtKB/Swiss-Prot
	FN3_sf	UniProtKB/Swiss-Prot
	Ig-like_dom	UniProtKB/Swiss-Prot
	Ig-like_dom_sf	UniProtKB/Swiss-Prot
	Ig-like_fold	UniProtKB/Swiss-Prot
	Ig_I-set	UniProtKB/Swiss-Prot
	Ig_sub	UniProtKB/Swiss-Prot
	Ig_sub2	UniProtKB/Swiss-Prot
	Leu-rich_rpt	UniProtKB/Swiss-Prot
	Leu-rich_rpt_typical-subtyp	UniProtKB/Swiss-Prot
	LRR_dom_sf	UniProtKB/Swiss-Prot
KEGG Report	rno:500280	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:124972	IMAGE-MGC_LOAD
NCBI Gene	500280	ENTREZGENE
PANTHER	IG(IMMUNOGLOBULIN) AND LRR(LEUCINE RICH REPEAT) DOMAINS	UniProtKB/Swiss-Prot
	LEUCINE RICH REPEAT NEURONAL 1	UniProtKB/Swiss-Prot
Pfam	I-set	UniProtKB/Swiss-Prot
	LRR_8	UniProtKB/Swiss-Prot
	LRRCT	UniProtKB/Swiss-Prot
PhenoGen	Lrrn1	PhenoGen
PROSITE	FN3	UniProtKB/Swiss-Prot
	IG_LIKE	UniProtKB/Swiss-Prot
	LRR	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000006802	RatGTEx
SMART	IGc2	UniProtKB/Swiss-Prot
	LRR_SD22	UniProtKB/Swiss-Prot
	LRR_TYP	UniProtKB/Swiss-Prot
	LRRCT	UniProtKB/Swiss-Prot
	SM00409	UniProtKB/Swiss-Prot
Superfamily-SCOP	L domain-like	UniProtKB/Swiss-Prot
	SSF48726	UniProtKB/Swiss-Prot
	SSF49265	UniProtKB/Swiss-Prot
UniProt	A6IBK4	ENTREZGENE, UniProtKB/TrEMBL
	LRRN1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2006-02-09	Lrrn1	leucine rich repeat neuronal 1			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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