Rwdd4 (RWD domain containing 4) - Rat Genome Database

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Gene: Rwdd4 (RWD domain containing 4) Rattus norvegicus
Analyze
Symbol: Rwdd4
Name: RWD domain containing 4
RGD ID: 1564132
Description: Orthologous to human RWDD4 (RWD domain containing 4); INTERACTS WITH 2,6-dinitrotoluene; 4,4'-diaminodiphenylmethane; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: family with sequence similarity 28, member A; RWD domain containing 4A; RWD domain-containing protein 4; Rwdd4a
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81651,447,384 - 51,465,718 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1651,447,385 - 51,465,759 (-)EnsemblGRCr8
mRatBN7.21644,714,698 - 44,733,090 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1644,714,699 - 44,733,098 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1650,121,020 - 50,139,359 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01653,481,591 - 53,499,930 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01648,760,863 - 48,779,027 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01647,856,522 - 47,874,921 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1647,856,523 - 47,874,856 (-)Ensemblrn6Rnor6.0
Rnor_5.01647,576,119 - 47,594,511 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41647,928,187 - 47,946,521 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1642,724,838 - 42,743,172 (-)NCBICelera
Cytogenetic Map16q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:15489334  


Genomics

Comparative Map Data
Rwdd4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81651,447,384 - 51,465,718 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1651,447,385 - 51,465,759 (-)EnsemblGRCr8
mRatBN7.21644,714,698 - 44,733,090 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1644,714,699 - 44,733,098 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1650,121,020 - 50,139,359 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01653,481,591 - 53,499,930 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01648,760,863 - 48,779,027 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01647,856,522 - 47,874,921 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1647,856,523 - 47,874,856 (-)Ensemblrn6Rnor6.0
Rnor_5.01647,576,119 - 47,594,511 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41647,928,187 - 47,946,521 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1642,724,838 - 42,743,172 (-)NCBICelera
Cytogenetic Map16q11NCBI
RWDD4
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh384183,639,635 - 183,659,185 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl4183,639,635 - 183,659,203 (-)Ensemblhg38GRCh38
GRCh374184,560,788 - 184,580,338 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 364184,797,783 - 184,817,325 (-)NCBIBuild 36Build 36hg18NCBI36
Celera4181,893,096 - 181,913,435 (-)NCBICelera
Cytogenetic Map4q35.1NCBI
HuRef4180,320,050 - 180,339,600 (-)NCBIHuRef
CHM1_14184,537,761 - 184,557,303 (-)NCBICHM1_1
T2T-CHM13v2.04186,982,826 - 187,002,381 (-)NCBIT2T-CHM13v2.0
Rwdd4a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39847,986,680 - 48,005,872 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl847,986,699 - 48,005,990 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38847,533,645 - 47,552,837 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl847,533,664 - 47,552,955 (+)Ensemblmm10GRCm38
MGSCv37848,618,999 - 48,638,191 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36849,032,526 - 49,051,642 (+)NCBIMGSCv36mm8
Celera850,205,667 - 50,224,904 (+)NCBICelera
Cytogenetic Map8B1.1NCBI
cM Map826.86NCBI
Rwdd4
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540325,210,860 - 25,229,970 (+)Ensembl
ChiLan1.0NW_00495540325,211,506 - 25,229,830 (+)NCBIChiLan1.0ChiLan1.0
RWDD4
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v23181,373,340 - 181,392,713 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan14181,738,201 - 181,757,569 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v04175,816,901 - 175,836,257 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.14188,042,054 - 188,058,722 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl4188,043,841 - 188,058,720 (-)EnsemblpanPan2panpan1.1
RWDD4
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11646,736,128 - 46,752,508 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1646,736,137 - 46,750,880 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1647,164,716 - 47,179,643 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01648,953,440 - 48,969,813 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1648,953,383 - 48,969,813 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11646,916,999 - 46,931,713 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01647,532,544 - 47,547,275 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01647,666,388 - 47,681,316 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rwdd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494332,625,684 - 32,641,197 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365545,469,059 - 5,482,569 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365545,468,793 - 5,483,311 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RWDD4
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1544,975,145 - 44,989,421 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11544,975,136 - 44,989,540 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21551,587,841 - 51,604,585 (-)NCBISscrofa10.2Sscrofa10.2susScr3
RWDD4
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.17129,615,420 - 129,634,181 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl7129,617,212 - 129,634,161 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037109,836,297 - 109,855,108 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rwdd4
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462476914,371,379 - 14,387,686 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462476914,363,406 - 14,388,807 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Rwdd4
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11340,487,567 - 40,505,410 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rwdd4
77 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:104
Count of miRNA genes:80
Interacting mature miRNAs:86
Transcripts:ENSRNOT00000035323
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2300163Bmd64Bone mineral density QTL 645.30.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)164445512389455123Rat
70215Niddm29Non-insulin dependent diabetes mellitus QTL 293.54blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)163692878281928782Rat
1578768Stresp22Stress response QTL 222.8thymus mass (VT:0004954)thymus wet weight (CMO:0000855)164199206486992064Rat
737826Alc11Alcohol consumption QTL 113.2consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)16423421266955197Rat
2302057Pia29Pristane induced arthritis QTL 293.60.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)162846870173468701Rat
7205510Activ5Activity QTL 53.780.00028locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)164909919691442908Rat
1357403Slep4Serum leptin concentration QTL 43.91blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)163236104377361043Rat
737819Hcas4Hepatocarcinoma susceptibility QTL 44.43liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)16423421253708481Rat
631833Sach2Saccharin preference QTL 240.01consumption behavior trait (VT:0002069)calculated saccharin drink intake rate (CMO:0001613)164975766656898388Rat
8694453Bw172Body weight QTL 1728.330.001retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)163105803976058039Rat
1298529Arunc1Aerobic running capacity QTL 14exercise endurance trait (VT:0002332)longest distance run on treadmill (CMO:0001406)163439829479398294Rat
2312663Slep9Serum leptin concentration QTL 90.001blood leptin amount (VT:0005667)serum leptin level (CMO:0000780)1683908666195506Rat
2312660Bw95Body weight QTL 950.05inguinal fat pad mass (VT:0010424)inguinal fat pad weight to body weight ratio (CMO:0001253)1683908666195506Rat
6903294Stl30Serum triglyceride level QTL 302.60.0013blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)163188527176885271Rat
2293690Bss45Bone structure and strength QTL 455.130.0001lumbar vertebra morphology trait (VT:0010494)lumbar vertebra cortical cross-sectional area (CMO:0001690)164445512389455123Rat
2312666Insul16Insulin level QTL 160.01blood insulin amount (VT:0001560)serum insulin level (CMO:0000358)1683908666195506Rat
70205Gcr3Gastric cancer resistance QTL 32.3stomach morphology trait (VT:0000470)stomach tumor diameter (CMO:0001889)161773081872536785Rat
2293343Glom16Glomerulus QTL 167.4kidney glomerulus integrity trait (VT:0010546)kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)1683908652786090Rat
2301406Kidm39Kidney mass QTL 390.002kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)161590580260905802Rat
2312669Stl23Serum triglyceride level QTL 230.01blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)1683908666195506Rat

Markers in Region
RH128911  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21644,714,778 - 44,714,980 (+)MAPPERmRatBN7.2
Rnor_6.01647,856,603 - 47,856,804NCBIRnor6.0
Rnor_5.01647,576,200 - 47,576,401UniSTSRnor5.0
RGSC_v3.41647,928,268 - 47,928,469UniSTSRGSC3.4
Celera1642,724,919 - 42,725,120UniSTS
RH 3.4 Map17114.9UniSTS
Cytogenetic Map16q11UniSTS
RH130120  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21644,716,343 - 44,716,529 (+)MAPPERmRatBN7.2
Rnor_6.01647,858,168 - 47,858,353NCBIRnor6.0
Rnor_5.01647,577,765 - 47,577,950UniSTSRnor5.0
RGSC_v3.41647,929,833 - 47,930,018UniSTSRGSC3.4
Celera1642,726,484 - 42,726,669UniSTS
Cytogenetic Map16q11UniSTS
RH133416  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8X63,169,115 - 63,169,310 (+)Marker Load Pipeline
mRatBN7.2X59,175,352 - 59,175,547 (+)MAPPERmRatBN7.2
Rnor_6.0X63,538,288 - 63,538,482NCBIRnor6.0
Rnor_5.0X64,448,115 - 64,448,309UniSTSRnor5.0
RGSC_v3.4X81,802,060 - 81,802,254UniSTSRGSC3.4
CeleraX59,604,914 - 59,605,108UniSTS
Cytogenetic MapXq31UniSTS
Cytogenetic Map16q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000035323   ⟹   ENSRNOP00000033649
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1651,448,499 - 51,465,759 (-)Ensembl
mRatBN7.2 Ensembl1644,716,612 - 44,733,098 (-)Ensembl
Rnor_6.0 Ensembl1647,858,638 - 47,874,647 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000077810   ⟹   ENSRNOP00000073640
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1651,447,385 - 51,465,718 (-)Ensembl
mRatBN7.2 Ensembl1644,714,699 - 44,733,098 (-)Ensembl
Rnor_6.0 Ensembl1647,856,523 - 47,874,856 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000115627   ⟹   ENSRNOP00000097685
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1644,718,593 - 44,733,098 (-)Ensembl
RefSeq Acc Id: NM_001034994   ⟹   NP_001030166
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81651,447,384 - 51,465,718 (-)NCBI
mRatBN7.21644,714,698 - 44,733,032 (-)NCBI
Rnor_6.01647,856,522 - 47,874,856 (-)NCBI
Rnor_5.01647,576,119 - 47,594,511 (-)NCBI
RGSC_v3.41647,928,187 - 47,946,521 (-)RGD
Celera1642,724,838 - 42,743,172 (-)RGD
Sequence:
RefSeq Acc Id: XM_063275654   ⟹   XP_063131724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81651,447,384 - 51,465,617 (-)NCBI
RefSeq Acc Id: XM_063275655   ⟹   XP_063131725
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81651,447,384 - 51,462,623 (-)NCBI
RefSeq Acc Id: NP_001030166   ⟸   NM_001034994
- UniProtKB: Q569B7 (UniProtKB/Swiss-Prot),   A0A0G2K617 (UniProtKB/TrEMBL),   A6JPL3 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000073640   ⟸   ENSRNOT00000077810
Ensembl Acc Id: ENSRNOP00000033649   ⟸   ENSRNOT00000035323
Ensembl Acc Id: ENSRNOP00000097685   ⟸   ENSRNOT00000115627
RefSeq Acc Id: XP_063131724   ⟸   XM_063275654
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AT52 (UniProtKB/TrEMBL),   A0A0G2K617 (UniProtKB/TrEMBL),   A6JPL3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063131725   ⟸   XM_063275655
- Peptide Label: isoform X2
Protein Domains
RWD

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q569B7-F1-model_v2 AlphaFold Q569B7 1-188 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700093
Promoter ID:EPDNEW_R10615
Type:initiation region
Name:Rwdd4_1
Description:RWD domain containing 4
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.01647,874,898 - 47,874,958EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564132 AgrOrtholog
BioCyc Gene G2FUF-11407 BioCyc
Ensembl Genes ENSRNOG00000022500 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000035323 ENTREZGENE
  ENSRNOT00000035323.5 UniProtKB/Swiss-Prot
Gene3D-CATH 3.10.110.10 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7369199 IMAGE-MGC_LOAD
InterPro RWD-domain UniProtKB/Swiss-Prot
  RWDD4 UniProtKB/Swiss-Prot
  UBQ-conjugating_enzyme/RWD UniProtKB/Swiss-Prot
KEGG Report rno:502084 UniProtKB/Swiss-Prot
MGC_CLONE MGC:108853 IMAGE-MGC_LOAD
NCBI Gene 502084 ENTREZGENE
PANTHER PTHR21275 UniProtKB/Swiss-Prot
  RWD DOMAIN-CONTAINING PROTEIN 4 UniProtKB/Swiss-Prot
Pfam RWD UniProtKB/Swiss-Prot
PhenoGen Rwdd4 PhenoGen
PROSITE RWD UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000022500 RatGTEx
SMART RWD UniProtKB/Swiss-Prot
Superfamily-SCOP SSF54495 UniProtKB/Swiss-Prot
UniProt A0A0G2K617 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AT52 ENTREZGENE
  A6JPL3 ENTREZGENE, UniProtKB/TrEMBL
  Q569B7 ENTREZGENE, UniProtKB/Swiss-Prot


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2012-10-16 Rwdd4  RWD domain containing 4  Rwdd4a  RWD domain containing 4A  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 Rwdd4a  RWD domain containing 4A      Symbol and Name status set to provisional 70820 PROVISIONAL