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Gene: Cfap77 (cilia and flagella associated protein 77) Rattus norvegicus

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Symbol:

Cfap77

Name:

cilia and flagella associated protein 77

RGD ID:

1564114

Description:

Predicted to be involved in flagellated sperm motility. Predicted to be located in axonemal microtubule. Predicted to be active in axonemal B tubule inner sheath and sperm flagellum. Orthologous to human CFAP77 (cilia and flagella associated protein 77); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

cilia- and flagella-associated protein 77; hypothetical protein LOC499765; LOC100909960; LOC499765; RGD1564114; similar to FLJ46082 protein; uncharacterized LOC100909960; uncharacterized protein C9orf171 homolog; uncharacterized protein C9orf171-like; uncharacterized protein LOC499765

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	32,656,410 - 32,779,261 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	32,656,410 - 32,779,261 (-)	Ensembl				GRCr8
mRatBN7.2	3	12,258,453 - 12,381,319 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	12,258,453 - 12,381,319 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	15,331,516 - 15,454,277 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	23,916,487 - 24,039,252 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	22,170,933 - 22,293,704 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	7,508,500 - 7,632,311 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	7,508,496 - 7,632,345 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	12,858,726 - 12,980,874 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	7,934,968 - 8,059,535 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	7,037,739 - 7,160,534 (-)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-tetrachlorodibenzodioxine (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

buta-1,3-diene (ISO)

chlorpyrifos (ISO)

cisplatin (EXP)

Cuprizon (EXP)

dibutyl phthalate (EXP)

endosulfan (EXP)

fulvestrant (ISO)

gentamycin (EXP)

glycidyl methacrylate (ISO)

lead diacetate (EXP)

linezolid (EXP)

methoxychlor (EXP)

N,N-diethyl-m-toluamide (EXP)

paracetamol (EXP,ISO)

permethrin (EXP,ISO)

sodium arsenite (ISO)

tetrachloromethane (EXP)

trichloroethene (EXP)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

flagellated sperm motility (IEA,ISO)

Cellular Component

axonemal B tubule inner sheath (IEA,ISO)

axonemal microtubule (IEA,ISO)

axoneme (IEA,ISO)

cilium (IEA,ISO)

sperm flagellum (IEA,ISO)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Cfap77
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	32,656,410 - 32,779,261 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	32,656,410 - 32,779,261 (-)	Ensembl				GRCr8
mRatBN7.2	3	12,258,453 - 12,381,319 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	12,258,453 - 12,381,319 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	3	15,331,516 - 15,454,277 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	23,916,487 - 24,039,252 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	22,170,933 - 22,293,704 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	7,508,500 - 7,632,311 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	7,508,496 - 7,632,345 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	12,858,726 - 12,980,874 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	7,934,968 - 8,059,535 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	7,037,739 - 7,160,534 (-)	NCBI		Celera
Cytogenetic Map	3	p12	NCBI

CFAP77
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	9	132,410,211 - 132,573,319 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	9	132,410,043 - 132,573,319 (+)	Ensembl			hg38	GRCh38
GRCh37	9	135,285,598 - 135,448,706 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	9	134,275,432 - 134,438,496 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	9	105,827,436 - 105,990,419 (+)	NCBI		Celera
Cytogenetic Map	9	q34.13	NCBI
HuRef	9	104,778,926 - 104,942,484 (+)	NCBI		HuRef
CHM1_1	9	135,435,625 - 135,599,048 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	9	144,624,655 - 144,784,525 (+)	NCBI		T2T-CHM13v2.0

Cfap77
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	28,845,493 - 28,945,078 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	28,816,961 - 28,945,078 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	28,955,481 - 29,055,066 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	28,926,949 - 29,055,066 (-)	Ensembl			mm10	GRCm38
MGSCv37	2	28,811,001 - 28,910,586 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	28,777,382 - 28,877,075 (-)	NCBI		MGSCv36	mm8
Celera	2	28,661,281 - 28,761,310 (-)	NCBI		Celera
Cytogenetic Map	2	A3	NCBI
cM Map	2	19.38	NCBI

Cfap77
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955513	1,834,388 - 1,953,638 (+)	Ensembl
ChiLan1.0	NW_004955513	1,834,654 - 1,951,827 (+)	NCBI	ChiLan1.0	ChiLan1.0

CFAP77
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	11	6,785,813 - 6,947,699 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	9	6,788,151 - 6,950,036 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	9	103,528,991 - 103,690,634 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	9	132,162,008 - 132,322,666 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	9	132,162,008 - 132,322,666 (+)	Ensembl			panPan2	panpan1.1

CFAP77
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	9	51,721,893 - 51,852,212 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	9	51,721,839 - 51,852,453 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	9	50,986,563 - 51,116,854 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	9	52,614,914 - 52,745,256 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	9	52,614,913 - 52,745,594 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	9	51,394,796 - 51,525,164 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	9	51,719,276 - 51,849,618 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	9	51,799,032 - 51,935,926 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cfap77
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	199,218,290 - 199,335,241 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936487	18,986,966 - 19,103,044 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936487	18,986,966 - 19,103,044 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CFAP77
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	1	272,217,072 - 272,361,733 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	1	272,216,581 - 272,362,321 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	1	306,244,364 - 306,394,538 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CFAP77
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	12	5,566,994 - 5,731,619 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666079	9,890,199 - 10,071,860 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cfap77
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624760	3,779,492 - 3,890,851 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624760	3,780,678 - 3,890,265 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cfap77
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	7,624,577 - 7,746,851 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cfap77
682 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	101
Count of miRNA genes:	75
Interacting mature miRNAs:	92
Transcripts:	ENSRNOT00000049889
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
1358357	Srcrtb1	Stress Responsive Cort Basal QTL 1	6.36	0.002	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	29056275	47904329	Rat
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10450811	Scl73	Serum cholesterol level QTL 73	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
2292615	Ept17	Estrogen-induced pituitary tumorigenesis QTL 17	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat
10450808	Scl72	Serum cholesterol level QTL 72	4.4	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
10450806	Scl71	Serum cholesterol level QTL 71	5.8	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	2904329	47904329	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	28625339	67641995	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	6125437	51125437	Rat
8693641	Alc30	Alcohol consumption QTL 30	2	0.739	drinking behavior trait (VT:0001422)	calculated ethanol drink intake rate (CMO:0001615)	3	30832384	44921701	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	36721849	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	6556347	51556347	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	22677150	50766390	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	15272348	60272348	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	5766390	50766390	Rat
70203	Gcr2	Gastric cancer resistance QTL 2	2.6		stomach morphology trait (VT:0000470)	stomach tumor susceptibility score (CMO:0002043)	3	29056275	47904329	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358185	Ept6	Estrogen-induced pituitary tumorigenesis QTL 6	6.7		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	6556347	51556347	Rat

Markers in Region

RH133252

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	12,258,504 - 12,258,697 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	7,508,552 - 7,508,744	NCBI	Rnor6.0
Rnor_5.0	3	12,858,778 - 12,858,970	UniSTS	Rnor5.0
RGSC_v3.4	3	7,935,020 - 7,935,212	UniSTS	RGSC3.4
Celera	3	7,037,791 - 7,037,983	UniSTS
RH 3.4 Map	3	28.5	UniSTS
Cytogenetic Map	3	p12	UniSTS

AU047988

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	12,308,175 - 12,308,454 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	7,558,217 - 7,558,495	NCBI	Rnor6.0
Rnor_6.0	3	10,916,483 - 10,916,761	NCBI	Rnor6.0
Rnor_5.0	3	12,908,443 - 12,908,721	UniSTS	Rnor5.0
Rnor_5.0	3	16,270,713 - 16,270,991	UniSTS	Rnor5.0
RGSC_v3.4	3	7,984,684 - 7,984,962	UniSTS	RGSC3.4
Celera	3	7,087,441 - 7,087,719	UniSTS
Cytogenetic Map	3	p12	UniSTS

UniSTS:224561

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	12,366,671 - 12,366,891 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	7,617,019 - 7,617,238	NCBI	Rnor6.0
Rnor_5.0	3	12,966,728 - 12,966,947	UniSTS	Rnor5.0
RGSC_v3.4	3	8,044,960 - 8,045,179	UniSTS	RGSC3.4
Celera	3	7,146,085 - 7,146,304	UniSTS
Cytogenetic Map	3	p12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	2	41	158	86	85	54	77	54	5	291	142	8	140	78	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001127563	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC166521	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000049889 ⟹ ENSRNOP00000050516

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	32,656,410 - 32,779,261 (-)	Ensembl
mRatBN7.2 Ensembl	3	12,258,453 - 12,381,319 (-)	Ensembl
Rnor_6.0 Ensembl	3	7,508,496 - 7,632,345 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000073625 ⟹ ENSRNOP00000065618

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	12,258,453 - 12,381,288 (-)	Ensembl

RefSeq Acc Id:

NM_001127563 ⟹ NP_001121035

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	32,656,410 - 32,779,261 (-)	NCBI
mRatBN7.2	3	12,258,453 - 12,381,319 (-)	NCBI
Rnor_6.0	3	7,508,500 - 7,632,311 (-)	NCBI
Rnor_5.0	3	12,858,726 - 12,980,874 (-)	NCBI
RGSC_v3.4	3	7,934,968 - 8,059,535 (-)	RGD
Celera	3	7,037,739 - 7,160,534 (-)	RGD

Sequence:

show sequence

CAGCCAGGGTCTGATCCCGGAGACCCCCAGGATGCCTGACCCGGGGAAACCCCGGAAAGACCTC
TCGCGATGGAAGAAGAAGAAGCAGCCCGTGCACCGCACGGTCAGCCAGATCTGCCCGCCGCCCC
GACGGCCGCTGACGGTGGTCGACATCCGCCCGGGCATGGAGAACGAAAGGCTGGGGGTCGTGCG
TGACTCCATGTTTCAGAACCCGCTCATTGTCAAGGCAGAACTTGGCAAGCCCAGGGAGAGAAGC
TGCAGCCTGCCTGGCGTCGACTTTAATTATGGACTCTACATCCAAGGGATAGATGGAGGGGTTC
CTGAAGCCATTGGGCACTGGAATGTGTTTAAGCAGCAACCCACCTGTCCCCATGAGCTGACCCG
GAACTATATTGCCATGAACCGAGGGGCAGTCAAAGCTGGCCTGGTGACTGCCCGGGAAAACATG
CTCTATCGTGAACTGAATGACATTCGAATCAATGACCAGGAAGACCGGCGACAGAAGGAGCCGC
CCTCCATCCCTCCCAACATGACCTTTGGCATCCGTTCACGGCCCTCAACACCCTTCTTTGACCT
GTTACAACATCGGTACCAGCAGCTATGGATACAGGAGCAGAAGGCCACTCAGCAAGCCATCAAA
ATGGAGAAGAAACAGAAGGTAATCCTGGGAAAGCTGTATGAGACGAGGAGCAGTCAGCTGAGGA
AGTACAAGCCTCCTGTGAAGCTGGATACTCTCTGGCACATGCCTCACTTCAAGAAGGCGGTTTC
CCATCTTGATACGTTCCCTACGGATGCCGCTCGCCAGAGGGCTCTCAAAGCCCACAAGGAAGAG
CATGCTGTACGCCAGGGCACCCTACGAATGGGCAACTACACCCACCCCTAGCCTCCTCACAGGG
GGAGCCTCCTAGATGCGCTGGGAAAAAAATCCCCAAAGAGCTCAGTTTTCTCCCCCAGACCCCA
GGATGACAGTCCTACACTTTGACACAACCCTTTGCCACAGGGACCTCAGATTCAAGTCTTAGGT
TGCTTATTTTCTTTATAAGAACCCCGACCCACACACACCCTTTTGTTACACAACACCAGTCCTG
TCTTTCCTCTAGTTTCCCTTTGCCTAGAAACCACCATCCTCCTCAAAATTCTTTTCCCCTTCTC
CTCACCCCTTCCTCTCTTCTTCCCTTTCTCTTTCTATTTTACCCCCTCCTCCTTCAGGAGACCC
ACTCTGCCTCTTTGCAAGTCTTACTTTACAAGATAAACCAAAAATACAAGGCAGTTCTTTAAAA
AAAAAATATCCAGGCTAAGAGTCAGCTTCACTGCCTATGCCTGTGCACTTCCACAAGGCGTAGC
GCCAGTAGGCGTTGGAAGCACTCATTTCTTATTCCAAACACGAGTTTTAATTGCCCTTCTGGGC
ACGGCTGGGGTCTCAACACAGCAGGAGTCTCTCTCTGGGACCCCTGACAGTAGGAAGAACCCGC
GGTTCATTACTCAGAGGTAGGCCCCGCCCTCAGTGCTGTGGCCCTGTCAATCAGACAGACCCGC
CTGGACTTCTTAAGACTATCTGGATGTGGTTCACTCTTCCAAAGGAGAATGCCTTGTGGTGGGC
AGGTGGCAGCCGTGGACTATCTCTTGATTCATACCTTTCTCTGGTGTCTTTGGCTTCTCTCCAC
AAATTACAAAGGGATTTATTTTAAATATAAAAAGATGACTTGCAAAAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA

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Protein Sequences


Protein RefSeqs	NP_001121035	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI66521	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000050516
	ENSRNOP00000050516.2

RefSeq Acc Id:

NP_001121035 ⟸ NM_001127563

- UniProtKB:

B2GV45 (UniProtKB/TrEMBL), M0R828 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MPDPGKPRKDLSRWKKKKQPVHRTVSQICPPPRRPLTVVDIRPGMENERLGVVRDSMFQNPLIV
KAELGKPRERSCSLPGVDFNYGLYIQGIDGGVPEAIGHWNVFKQQPTCPHELTRNYIAMNRGAV
KAGLVTARENMLYRELNDIRINDQEDRRQKEPPSIPPNMTFGIRSRPSTPFFDLLQHRYQQLWI
QEQKATQQAIKMEKKQKVILGKLYETRSSQLRKYKPPVKLDTLWHMPHFKKAVSHLDTFPTDAA
RQRALKAHKEEHAVRQGTLRMGNYTHP

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Ensembl Acc Id:

ENSRNOP00000050516 ⟸ ENSRNOT00000049889

Ensembl Acc Id:

ENSRNOP00000065618 ⟸ ENSRNOT00000073625

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B2GV45-F1-model_v2	AlphaFold	B2GV45	1-283	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691940

Promoter ID:

EPDNEW_R2465

Type:

multiple initiation site

Name:

Cfap77_1

Description:

cilia and flagella associated protein 77

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	7,632,330 - 7,632,390	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564114	AgrOrtholog
BioCyc Gene	G2FUF-50265	BioCyc
Ensembl Genes	ENSRNOG00000028805	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000049889	ENTREZGENE
	ENSRNOT00000049889.5	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7133997	IMAGE-MGC_LOAD
InterPro	DUF4483	UniProtKB/TrEMBL
KEGG Report	rno:499765	UniProtKB/TrEMBL
MGC_CLONE	MGC:188104	IMAGE-MGC_LOAD
NCBI Gene	499765	ENTREZGENE
PANTHER	CILIA- AND FLAGELLA-ASSOCIATED PROTEIN 77	UniProtKB/TrEMBL
	PTHR28617	UniProtKB/TrEMBL
Pfam	DUF4483	UniProtKB/TrEMBL
PhenoGen	Cfap77	PhenoGen
RatGTEx	ENSRNOG00000028805	RatGTEx
UniProt	B2GV45	ENTREZGENE, UniProtKB/TrEMBL
	M0R828	ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2021-03-09	Cfap77	cilia and flagella associated protein 77	LOC100909960	uncharacterized LOC100909960	Data merged from RGD:6501108	737654	PROVISIONAL
2015-10-26	Cfap77	cilia and flagella associated protein 77	RGD1564114	similar to FLJ46082 protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2012-07-05	LOC100909960	uncharacterized LOC100909960			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	RGD1564114	similar to FLJ46082 protein	RGD1564114_predicted	similar to FLJ46082 protein (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1564114_predicted	similar to FLJ46082 protein (predicted)	LOC499765	similar to FLJ46082 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC499765	similar to FLJ46082 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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