Advanced Search (OLGA)

Gene: Vash2 (vasohibin 2) Rattus norvegicus

Analyze

Symbol:

Vash2

Name:

vasohibin 2

RGD ID:

1564105

Description:

Predicted to enable actin binding activity; metallocarboxypeptidase activity; and microtubule binding activity. Predicted to be involved in axon development; proteolysis; and regulation of angiogenesis. Predicted to act upstream of or within several processes, including labyrinthine layer blood vessel development; positive regulation of angiogenesis; and positive regulation of endothelial cell proliferation. Predicted to be located in cytosol. Predicted to be active in cytoplasm. Orthologous to human VASH2 (vasohibin 2); INTERACTS WITH 1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane; 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC498309; RGD1564105; similar to RIKEN cDNA B130052G07; tubulinyl-Tyr carboxypeptidase 2; vasohibin-2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	VASH2 (vasohibin 2)	HGNC	Ensembl, HomoloGene, NCBI, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Vash2 (vasohibin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Vash2 (vasohibin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	VASH2 (vasohibin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	VASH2 (vasohibin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Vash2 (vasohibin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	VASH2 (vasohibin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	VASH2 (vasohibin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Vash2 (vasohibin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Vash2 (vasohibin 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	VASH2 (vasohibin 2)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	VASH2 (vasohibin 2)	Alliance	DIOPT (HGNC\|OrthoFinder\|PhylomeDB)
Mus musculus (house mouse):	Vash2 (vasohibin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Vash2 (vasohibin 2)	Alliance	DIOPT (OrthoFinder\|PhylomeDB)
Danio rerio (zebrafish):	vash2 (vasohibin 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	vash2 (vasohibin 2)	Alliance	DIOPT (OrthoFinder\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	vash2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	vash2	Alliance	DIOPT (OrthoFinder\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	105,060,857 - 105,092,325 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	105,060,857 - 105,092,275 (-)	Ensembl				GRCr8
mRatBN7.2	13	102,529,718 - 102,561,204 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	102,529,719 - 102,560,391 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	105,049,806 - 105,081,229 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	106,433,780 - 106,465,191 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	103,648,776 - 103,680,181 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	109,521,190 - 109,552,607 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	109,521,190 - 109,552,589 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	114,122,604 - 114,154,107 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	107,030,990 - 107,050,262 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	101,998,332 - 102,029,347 (-)	NCBI		Celera
Cytogenetic Map	13	q27	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

basal cell carcinoma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,1,1-trichloro-2,2-bis(4-hydroxyphenyl)ethane (EXP)

1,2-dichloroethane (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,4-D (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

3',5'-cyclic AMP (EXP)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

acrylamide (EXP)

aldehydo-D-glucose (ISO)

alpha-Zearalanol (EXP)

amitrole (EXP)

arsenite(3-) (ISO)

atrazine (EXP,ISO)

belinostat (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (EXP)

bisphenol A (EXP,ISO)

butanal (ISO)

carbamazepine (ISO)

clotrimazole (EXP)

copper atom (ISO)

copper(0) (ISO)

D-glucose (ISO)

dexamethasone (ISO)

diallyl disulfide (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (EXP)

disodium selenite (ISO)

diuron (EXP)

dorsomorphin (ISO)

entinostat (ISO)

fructose (ISO)

gentamycin (EXP)

glucose (ISO)

lipopolysaccharide (ISO)

methimazole (EXP)

okadaic acid (ISO)

panobinostat (ISO)

paracetamol (EXP)

perfluorooctanoic acid (EXP)

pirinixic acid (ISO)

pregnenolone 16alpha-carbonitrile (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

silicon dioxide (ISO)

sulfadimethoxine (EXP)

sulforaphane (ISO)

tetrachloromethane (EXP)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vorinostat (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon development (IEA,ISO)

cell-cell fusion (ISO)

labyrinthine layer blood vessel development (ISO)

labyrinthine layer development (ISO)

placenta blood vessel development (ISO)

positive regulation of angiogenesis (ISO)

positive regulation of endothelial cell proliferation (ISO)

proteolysis (IEA,ISO)

regulation of angiogenesis (IBA,IEA)

syncytium formation by plasma membrane fusion (ISO)

Cellular Component

cytoplasm (IBA,IEA,ISO)

cytosol (IEA,ISO)

Molecular Function

actin binding (IEA,ISO)

metallocarboxypeptidase activity (IEA,ISO)

microtubule binding (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19204325	PMID:25184477	PMID:29146868	PMID:29146869	PMID:31171830	PMID:31235911	PMID:31324789

Genomics

Comparative Map Data

Vash2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	105,060,857 - 105,092,325 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	105,060,857 - 105,092,275 (-)	Ensembl				GRCr8
mRatBN7.2	13	102,529,718 - 102,561,204 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	102,529,719 - 102,560,391 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	105,049,806 - 105,081,229 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	106,433,780 - 106,465,191 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	103,648,776 - 103,680,181 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	109,521,190 - 109,552,607 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	109,521,190 - 109,552,589 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	114,122,604 - 114,154,107 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	107,030,990 - 107,050,262 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	101,998,332 - 102,029,347 (-)	NCBI		Celera
Cytogenetic Map	13	q27	NCBI

VASH2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	212,950,541 - 212,991,585 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	212,950,520 - 212,992,838 (+)	Ensembl			hg38	GRCh38
GRCh37	1	213,123,883 - 213,164,927 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	211,190,600 - 211,230,875 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	186,345,429 - 186,386,460 (+)	NCBI		Celera
Cytogenetic Map	1	q32.3	NCBI
HuRef	1	183,798,827 - 183,839,870 (+)	NCBI		HuRef
CHM1_1	1	214,396,217 - 214,437,251 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	212,193,644 - 212,234,694 (+)	NCBI		T2T-CHM13v2.0

Vash2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	190,679,843 - 190,711,500 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	190,679,843 - 190,711,493 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	190,947,646 - 190,979,368 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	190,947,646 - 190,979,296 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	192,771,525 - 192,803,175 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	192,648,365 - 192,679,814 (-)	NCBI		MGSCv36	mm8
Celera	1	197,872,475 - 197,904,193 (-)	NCBI		Celera
Cytogenetic Map	1	H6	NCBI
cM Map	1	96.28	NCBI

Vash2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	4,607,924 - 4,640,002 (-)	Ensembl
ChiLan1.0	NW_004955406	4,607,924 - 4,639,949 (-)	NCBI	ChiLan1.0	ChiLan1.0

VASH2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	36,415,190 - 36,473,100 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	36,381,263 - 36,422,336 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	188,512,970 - 188,554,037 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	193,371,541 - 193,411,540 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	193,371,541 - 193,411,540 (+)	Ensembl			panPan2	panpan1.1

VASH2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	11,073,156 - 11,111,813 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	11,072,215 - 11,111,166 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	10,648,582 - 10,686,784 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	10,779,776 - 10,818,211 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	10,778,755 - 10,815,309 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	10,700,929 - 10,739,089 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	10,803,517 - 10,841,949 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	10,927,802 - 10,966,017 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Vash2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	63,386,362 - 63,420,323 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936557	623,934 - 661,857 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936557	622,947 - 661,495 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

VASH2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	130,473,857 - 130,511,246 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	130,473,854 - 130,511,307 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	143,400,798 - 143,438,269 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

VASH2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	16,564,009 - 16,603,961 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	16,566,999 - 16,603,962 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	17,059,010 - 17,100,041 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Vash2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624771	18,303,664 - 18,332,674 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624771	18,303,632 - 18,334,438 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Vash2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	69,038,461 - 69,070,344 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Vash2
173 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	737
Count of miRNA genes:	302
Interacting mature miRNAs:	388
Transcripts:	ENSRNOT00000005095
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
4889606	Gluco63	Glucose level QTL 63	2.86	0.003	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	83286150	109350286	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

RH132055

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	102,541,700 - 102,541,895 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	109,533,175 - 109,533,369	NCBI	Rnor6.0
Rnor_5.0	13	114,134,589 - 114,134,783	UniSTS	Rnor5.0
RGSC_v3.4	13	107,042,969 - 107,043,163	UniSTS	RGSC3.4
Celera	13	102,010,318 - 102,010,512	UniSTS
RH 3.4 Map	13	720.7	UniSTS
Cytogenetic Map	13	q27	UniSTS

RH143529

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	102,560,714 - 102,560,886 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	109,552,169 - 109,552,340	NCBI	Rnor6.0
Rnor_5.0	13	114,153,690 - 114,153,861	UniSTS	Rnor5.0
Celera	13	102,028,927 - 102,029,098	UniSTS
RH 3.4 Map	13	719.9	UniSTS
Cytogenetic Map	13	q27	UniSTS

BE099964

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	102,541,701 - 102,541,873 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	109,533,176 - 109,533,347	NCBI	Rnor6.0
Rnor_5.0	13	114,134,590 - 114,134,761	UniSTS	Rnor5.0
RGSC_v3.4	13	107,042,970 - 107,043,141	UniSTS	RGSC3.4
Celera	13	102,010,319 - 102,010,490	UniSTS
RH 3.4 Map	13	722.9	UniSTS
Cytogenetic Map	13	q27	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
15	12	66	152	85	84	53	67	53	6	323	166	11	131	81	92	31	13	13

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001394373	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001401379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429850	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429851	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429852	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429853	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429854	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_190818	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_190819	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_190820	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_190821	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_190822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006250463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769868	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769871	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598904	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272551	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272552	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840789	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_005492277	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056932	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY724511	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473985	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000005095 ⟹ ENSRNOP00000005095

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	105,060,857 - 105,091,624 (-)	Ensembl
mRatBN7.2 Ensembl	13	102,529,719 - 102,560,391 (-)	Ensembl
Rnor_6.0 Ensembl	13	109,521,190 - 109,552,589 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000130236 ⟹ ENSRNOP00000110878

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	105,060,858 - 105,092,275 (-)	Ensembl

RefSeq Acc Id:

NM_001394373 ⟹ NP_001381302

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	105,060,858 - 105,092,275 (-)	NCBI
mRatBN7.2	13	102,529,719 - 102,561,136 (-)	NCBI

RefSeq Acc Id:

NM_001401379 ⟹ NP_001388308

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	105,060,857 - 105,091,624 (-)	NCBI
mRatBN7.2	13	102,529,718 - 102,560,485 (-)	NCBI

RefSeq Acc Id:

XM_006250463 ⟹ XP_006250525

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	105,060,858 - 105,092,321 (-)	NCBI
mRatBN7.2	13	102,529,719 - 102,561,203 (-)	NCBI
Rnor_6.0	13	109,521,191 - 109,552,607 (-)	NCBI
Rnor_5.0	13	114,122,604 - 114,154,107 (-)	NCBI

Sequence:

show sequence

ACTCAGTTATTACTGTCACAGAATAACATTCGAGAATGGGATATGGAATGGGGCGACGACCGCC
TCAGCTCCAACAGCCTTCTGCAGCAATGAGGCCGACCCGAGGCCGGGCCGGTGAGCGGGGTTCT
CTTCGCGCGTCCTGCGGCCGCGAGAGTTAAAGGCCACCCCCGCGGGGCCCTGATCCCCGGCGTG
CCCGCGTCCTCCGCCCCCTCGCCGCGTGCCCCTCACCATGACCGGCTCCGCCGCCGACACTCAC
CGCTGCCCCCACCCCAAAAGCATCAAAGGCACCCGGTCCCGGAGCAGCCACGCGCGGCCGGTGA
GCCTCGCCACTAGCGGGGGCTCGGAGGAGGAGGACAAAGACGGCGGGGTGCTGTTCCACGTGAA
CAAGAGCGGGTTCCCTATCGACAGCCACACCTGGGAGCGGATGTGGCTGCATGTTGCCAAGGTC
CACCCCAGAGGGGGAGAGATGGTAGGCGCCATCAGAAACGCTGCCTTCCTGGCTAAGCCTTCAA
TTCCCCAGGTCCCAAACTACAGGTTGTCCATGACGATCCCAGACTGGCTCCAGGCCATCCAGAA
TTATATGAAGACACTACAATACAACCATACAGGGACCCAGTTCTTTGAAATCAGGAAAATGCGA
CCTCTGAGCGGGTTAATGGAGACGGCGAAAGAGATGACCCGAGAGTCCTTGCCTATCAAATGCC
TGGAGGCAGTCATCCTGGGCATATATTTAACCAATGGGCAGCCTTCCATTGAGCGGTTCCCTAT
CAGCTTTAAAACCTACTTCTCAGGAAGCTACTTTCACCATGTCGTGCTGGGGATTTACTGCAAT
GGTTACTACGGTTCACTGGGCATGAGCCGAAGGGCGGAGCTGATGGACAAGCCGCTGACCTTTA
GGACTCTGAGTGACCTTGTCTTTGACTTTGAAGACTCCTATAAGAAATACCTTCACACGGTCAA
GAAGGTCAAGATTGGGCTGTACGTCCCCCATGAGCCTCACAGCTTCCAGCCCATCGAGTGGAAG
CAACTTGTCCTCAATGTCTCAAAGATGCTGAGGGCTGACATCAGGAAGGAGCTGGAGAAGTACG
CCAGGGACATGCGGATGAAGATCTTGAAACCTGCAAGTGGCCACTCTCCAACCCAAGTGAGAAT
CCGGGGAAAGTCCCTGTCTCCACGGAGGAGACAAGCAAGCCCTCCGAGGAGGCTCGGCAGGCGA
GACAAATCAACTGAAGAGAACTACACCATCTTTGACAACAAGGTGGAAATAACCAGGAGCAAGA
GCCAAGACAATCGGCCACACCAGCACCTTCATCTGCATCCGAGGAAGACAGCTGTTAGACAGCT
ACAGTTGCCTGCTCTGACCGAGAAGAAGGTGGCTGACCTCAGTACTCTGAACGAAGTGGGCTAT
CAGATCCGGATCTAGCCAGGCAAGGCCAGCAAGGCTTCTATGGTGCTCTTCTCTGCGCTTTACC
CAGCAGCTTCAGGAGGAACTGCAACTTGTGGAGTTTTGATTTTGAAGGATTTACCTGGAGATAG
AATCTGAGTGGGTTTTTGAAAAACTCACTGGTCAGCAGGCATGACTGGGCTGAAGTGACGGACA
AACCCCTGGGTTGACTGACTCCCTCACTCAGGATCTCAAGAACAATGTTACTGCAGTTTTCTAT
TTTTCCATTTGCCGACTTTCCGCTTGCTTTGGACATTACGCCTCGGCTATAGTAACCGTTTGTG
GAGTCCCCTCCCACTTTTGGTACAGCAGGCAGCTCAGCCAGTACCGCCGTCTTCTCAGCAATAA
CAAGCGAGGATGGGTGGCTTCTTTAAACAGTTGATATTACCTCAGCGTTTGGCATCAGATATGC
AGTCTTAATGAGTTTTATATTCTATTTGTATTGTTTTCCTACAGGGATCTCGATGGTCTGGAGG
GTTTTTGTTGTTTTTTCTGGTTCACACGTGAGATGAGATTTAAGTTATATGCAGATGCTTTAGA
AGCACTGAAGTTCTGGCAATAAGGGAAACAGTGGGGTCTTGGAGTCTCTTTCCTTAAAGCATCT
GCTGACAGGTTTTCTCCTAACAAGCATGTTAAGAAGCTCTAGCCCATGCTGTTGCCAACAGTTA
AGCCTTTTCTGAGTCAGGCAAAAAGCACAAGAGACCATGTGTTCCTGAAAACACAGCAGTGCTG
AGACTTCTCAGACAGGAGGGCAGACGTCTGGTCAGCCTTGGCTCTTAGTGGCTCCTGGTAGTTA
GTGTTCTGCTGTCTTTCATGAGGGTAGACATGTTTTCCAGGAGCTTGTCTTAGGCGCCACTTCA
TGGCCTTAGGAGGCACTGGGGGAAGCCAGGACCTTAAGCCTGTCTTAAGGGAGGAGTTTCAGCA
CAGTGCTCTGCCTCAGTGTTACCCAGGCCTAGAGCACAGTGAGCCTGCCTGTGGCCACTCCAGC
ACAGCTTCTGCTCGCACCACGAGGAGGAAGCACAGCTTCAAGTCATTCATCTTAGTGGTCACCA
TGCCAACTCAGGAGAGCAGAGGCCCAGCTGCAGCTGAGTGGCTGGCCCCCAGAGTTCAGCATGC
TCCCTTTTGGCTGTGACTGGGGAGCTCTAAGAAGTCAACGTCTGCTCACTAAGTCTTTGCCAGG
AAAACCCTAGGGCCACAAGGAGGGCAAAGGTGTGTGCAGAAAAAAAAAAAACAAAAAAAAAAAA
CAAAAAAACAACCCACTCCCCACTCCAGCCAGCATTATTAATGAAAAGTTGTTTGCTTGGAAAG
CTTAGTGTCCTTTATAGGACAGGACCAGGAAACTAAATCAGTGTGAGCTTCAAATTCTCAACTC
AATGGCTTTCTTCAAGAATCCTGTTACTGCAGTTCAAGGTGAGTTATGGGGCCCAGGCGTGTGC
TCAGAGCCTCTGGTTTGACGCCCAGCACCCGAGGAAGCCCCACCCCCCTCCACATGTCCTCACG
ATCCCTGTTGTCAGGGCCATGTGCACTGAAATGTTCCAAGAAGCAATCTGGTGAGTGCAGCCAC
CAGGCCTGTGTTCAAGGTCAGCTCACAGAGACACAGCACTGAACATCAGGACAACCTTGATGTG
TGGCAACAGCAGGCAGCTGTGACACTGTCATCTAATCTCTTCCACAACCACCTGATTCTTAGGC
TCTTCTTTCAAGGCAGGGTTGGTCAGAAACATTTAAAAGGCTCTTTATCACTCAATTTTACTGC
CTGTAGTCACACTAAGACAGAAGCAAGCCCCAAACACCTACATTCTAATGCAATCGTTTACAGT
AAGACAGCAAAAGTGAACCCAGCTTGTCTTACCTCAGACTGACCTTCTGTCTGGCAGTGATGTA
GATGAAGAGGAAAACTGAGCTGACAGAAGCGAGTTTATCCTGTGCACCACGGCAAGACGCACAG
AGCTGGATAAGGACGTGAGCCGACTGCTACTGACTGTGAAAGTGGCCTGGGTGCTTTCTGACAT
GCGGGGGGTGGGGGGGGACGGGACCGTGAGCACGCCGCCCCTTTCCATGAGTCAGCTGTTTCCT
AGGGTGTCCTCAGCAGAGCGAGGTCATCAAAGGGCAGCCTTTGTAACCCCTCAGCTCACTGCAA
GCCTTTCGTACACTAGACTTTTATGTACAACCTTGTACAATGTTTTTGACGTACAACTCAGATT
CTTGTTTATTCTTAGACTTTGATCTGGCCAATACATTTTTAAAAAAATCTTTCAGATGAACCGT
GATTGCTTTAGTGGGTATTTTTCTAAGTACATGAAGACTTGATGGTATTCCACAGAACACCACA
AGTGCATGCTTCAGGCTCAAATCTCTCTCATGTGTCCACACACAGCATGGAACTGTAATAAAAC
TGATCTGGAAACTGAGGA

hide sequence

RefSeq Acc Id:

XM_008769868 ⟹ XP_008768090

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	105,060,858 - 105,092,325 (-)	NCBI
mRatBN7.2	13	102,529,719 - 102,561,204 (-)	NCBI
Rnor_6.0	13	109,521,191 - 109,552,607 (-)	NCBI

Sequence:

show sequence

ACTCAGTTATTACTGTCACAGAATAACATTCGAGAATGGGATATGGAATGGGGCGACGACCGCC
TCAGCTCCAACAGCCTTCTGCAGCAATGAGGCCGACCCGAGGCCGGGCCGGTGAGCGGGGTTCT
CTTCGCGCGTCCTGCGGCCGCGAGAGTTAAAGGCCACCCCCGCGGGGCCCTGATCCCCGGCGTG
CCCGCGTCCTCCGCCCCCTCGCCGCGTGCCCCTCACCATGACCGGCTCCGCCGCCGACACTCAC
CGCTGCCCCCACCCCAAAAGCATCAAAGGCACCCGGTCCCGGAGCAGCCACGCGCGGCCGGTGA
GCCTCGCCACTAGCGGGGGCTCGGAGGAGGAGGACAAAGACGGCGGGGTGCTGTTCCACGTGAA
CAAGAGCGGGTTCCCTATCGACAGCCACACCTGGGAGCGGATGTGGCTGCATGTTGCCAAGGTC
CACCCCAGAGGGGGAGAGATGGTAGGCGCCATCAGAAACGCTGCCTTCCTGGCTAAGCCTTCAA
TTCCCCAGGTCCCAAACTACAGGTTGTCCATGACGATCCCAGACTGGCTCCAGGCCATCCAGAA
TTATATGAAGACACTACAATACAACCATACAGGGACCCAGTTCTTTGAAATCAGGAAAATGCGA
CCTCTGAGCGGGTTAATGGAGACGGCGAAAGAGATGACCCGAGAGTCCTTGCCTATCAAATGCC
TGGAGGCAGTCATCCTGGGCATATATTTAACCAATGGGCAGCCTTCCATTGAGCGGTTCCCTAT
CAGCTTTAAAACCTACTTCTCAGGAAGCTACTTTCACCATGTCGTGCTGGGGATTTACTGCAAT
GGTTACTACGGTTCACTGGGCATGAGCCGAAGGGCGGAGCTGATGGACAAGCCGCTGACCTTTA
GGACTCTGAGTGACCTTGTCTTTGACTTTGAAGACTCCTATAAGAAATACCTTCACACGGTCAA
GAAGGTCAAGATTGGGCTGTACGTCCCCCATGAGCCTCACAGCTTCCAGCCCATCGAGTGGAAG
CAACTTGTCCTCAATGTCTCAAAGATGCTGAGGGCTGACATCAGGAAGGAGCTGGAGAAGTACG
CCAGGGACATGCGGATGAAGATCTTGAAACCTGCAAGTGGCCACTCTCCAACCCAAGTGAGAAT
CCGGGGAAAGTCCCTGTCTCCACGGAGGAGACAAGCAAGCCCTCCGAGGAGGCTCGGCAGGCGA
GACAAATCAACTGAAGAGAACTACACCATCTTTGACAACAAGGTGGAAATAACCAGGAGCAAGA
GTTCCCCAGAGTCATTCAGCAGCAGACCCACCTCTACTGGGCTTTATGAACCAAGGCAAAGAGT
TTGCATTAACAACCAACGTGGCAAGATGAAAGTGTTGAAGGCCAGTCATACCCTAGACTTGTCC
AGCCCTGGCAGGCCTCTGACTGAGACGGTCTCCAGCCAAGACAATCGGCCACACCAGCACCTTC
ATCTGCATCCGAGGAAGACAGCTGTTAGACAGCTACAGTTGCCTGCTCTGACCGAGAAGAAGGT
GGCTGACCTCAGTACTCTGAACGAAGTGGGCTATCAGATCCGGATCTAGCCAGGCAAGGCCAGC
AAGGCTTCTATGGTGCTCTTCTCTGCGCTTTACCCAGCAGCTTCAGGAGGAACTGCAACTTGTG
GAGTTTTGATTTTGAAGGATTTACCTGGAGATAGAATCTGAGTGGGTTTTTGAAAAACTCACTG
GTCAGCAGGCATGACTGGGCTGAAGTGACGGACAAACCCCTGGGTTGACTGACTCCCTCACTCA
GGATCTCAAGAACAATGTTACTGCAGTTTTCTATTTTTCCATTTGCCGACTTTCCGCTTGCTTT
GGACATTACGCCTCGGCTATAGTAACCGTTTGTGGAGTCCCCTCCCACTTTTGGTACAGCAGGC
AGCTCAGCCAGTACCGCCGTCTTCTCAGCAATAACAAGCGAGGATGGGTGGCTTCTTTAAACAG
TTGATATTACCTCAGCGTTTGGCATCAGATATGCAGTCTTAATGAGTTTTATATTCTATTTGTA
TTGTTTTCCTACAGGGATCTCGATGGTCTGGAGGGTTTTTGTTGTTTTTTCTGGTTCACACGTG
AGATGAGATTTAAGTTATATGCAGATGCTTTAGAAGCACTGAAGTTCTGGCAATAAGGGAAACA
GTGGGGTCTTGGAGTCTCTTTCCTTAAAGCATCTGCTGACAGGTTTTCTCCTAACAAGCATGTT
AAGAAGCTCTAGCCCATGCTGTTGCCAACAGTTAAGCCTTTTCTGAGTCAGGCAAAAAGCACAA
GAGACCATGTGTTCCTGAAAACACAGCAGTGCTGAGACTTCTCAGACAGGAGGGCAGACGTCTG
GTCAGCCTTGGCTCTTAGTGGCTCCTGGTAGTTAGTGTTCTGCTGTCTTTCATGAGGGTAGACA
TGTTTTCCAGGAGCTTGTCTTAGGCGCCACTTCATGGCCTTAGGAGGCACTGGGGGAAGCCAGG
ACCTTAAGCCTGTCTTAAGGGAGGAGTTTCAGCACAGTGCTCTGCCTCAGTGTTACCCAGGCCT
AGAGCACAGTGAGCCTGCCTGTGGCCACTCCAGCACAGCTTCTGCTCGCACCACGAGGAGGAAG
CACAGCTTCAAGTCATTCATCTTAGTGGTCACCATGCCAACTCAGGAGAGCAGAGGCCCAGCTG
CAGCTGAGTGGCTGGCCCCCAGAGTTCAGCATGCTCCCTTTTGGCTGTGACTGGGGAGCTCTAA
GAAGTCAACGTCTGCTCACTAAGTCTTTGCCAGGAAAACCCTAGGGCCACAAGGAGGGCAAAGG
TGTGTGCAGAAAAAAAAAAAACAAAAAAAAAAAACAAAAAAACAACCCACTCCCCACTCCAGCC
AGCATTATTAATGAAAAGTTGTTTGCTTGGAAAGCTTAGTGTCCTTTATAGGACAGGACCAGGA
AACTAAATCAGTGTGAGCTTCAAATTCTCAACTCAATGGCTTTCTTCAAGAATCCTGTTACTGC
AGTTCAAGGTGAGTTATGGGGCCCAGGCGTGTGCTCAGAGCCTCTGGTTTGACGCCCAGCACCC
GAGGAAGCCCCACCCCCCTCCACATGTCCTCACGATCCCTGTTGTCAGGGCCATGTGCACTGAA
ATGTTCCAAGAAGCAATCTGGTGAGTGCAGCCACCAGGCCTGTGTTCAAGGTCAGCTCACAGAG
ACACAGCACTGAACATCAGGACAACCTTGATGTGTGGCAACAGCAGGCAGCTGTGACACTGTCA
TCTAATCTCTTCCACAACCACCTGATTCTTAGGCTCTTCTTTCAAGGCAGGGTTGGTCAGAAAC
ATTTAAAAGGCTCTTTATCACTCAATTTTACTGCCTGTAGTCACACTAAGACAGAAGCAAGCCC
CAAACACCTACATTCTAATGCAATCGTTTACAGTAAGACAGCAAAAGTGAACCCAGCTTGTCTT
ACCTCAGACTGACCTTCTGTCTGGCAGTGATGTAGATGAAGAGGAAAACTGAGCTGACAGAAGC
GAGTTTATCCTGTGCACCACGGCAAGACGCACAGAGCTGGATAAGGACGTGAGCCGACTGCTAC
TGACTGTGAAAGTGGCCTGGGTGCTTTCTGACATGCGGGGGGTGGGGGGGGACGGGACCGTGAG
CACGCCGCCCCTTTCCATGAGTCAGCTGTTTCCTAGGGTGTCCTCAGCAGAGCGAGGTCATCAA
AGGGCAGCCTTTGTAACCCCTCAGCTCACTGCAAGCCTTTCGTACACTAGACTTTTATGTACAA
CCTTGTACAATGTTTTTGACGTACAACTCAGATTCTTGTTTATTCTTAGACTTTGATCTGGCCA
ATACATTTTTAAAAAAATCTTTCAGATGAACCGTGATTGCTTTAGTGGGTATTTTTCTAAGTAC
ATGAAGACTTGATGGTATTCCACAGAACACCACAAGTGCATGCTTCAGGCTCAAATCTCTCTCA
TGTGTCCACACACAGCATGGAACTGTAATAAAACTGATCTGGAAACTGAGGA

hide sequence

RefSeq Acc Id:

XM_008769869 ⟹ XP_008768091

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	105,060,858 - 105,092,087 (-)	NCBI
mRatBN7.2	13	102,529,719 - 102,561,006 (-)	NCBI
Rnor_6.0	13	109,521,191 - 109,552,496 (-)	NCBI

Sequence:

show sequence

CCCCGGGCCCCGCGCGCGTCGTGGCGACACGCAGTTGCCACTCGCGGTGCCCGCGCGGGACCCG
CGGGAAGGGGGCGGCGCTGCGCTTGCCCGGGAACCCGGGCTGGAGACGCCCCTCGCGCGCCAGG
GTTCGGGGGGCTTCCGGGAAGACGCCAGGCCTCCTTAACAAGCCGAGGCTGCTGCGGCGCCCTC
GCGCCGGCCCCGGGCGCTCACGTGTCCGCTCGCTCTGGGTCGGTGGCAGTCCACCACATCTGGG
GACCCAGGGATGCGTGAAGCTGCAGGGGACTCTCGAGTCTTCTTGCTACACAGCTGTCTTGCTT
CTTCCCACCCCGTCCCCTCCTCACCCCGAGCTCCTTGCATGCCTCCCCATCCCCAAGTGCAGCT
GGGTGTGAGGCTTCGTGGCGTCTTTCCAGCCGCCTTGCTAGGCCGGGCCGGTGAGCGGGGTTCT
CTTCGCGCGTCCTGCGGCCGCGAGAGTTAAAGGCCACCCCCGCGGGGCCCTGATCCCCGGCGTG
CCCGCGTCCTCCGCCCCCTCGCCGCGTGCCCCTCACCATGACCGGCTCCGCCGCCGACACTCAC
CGCTGCCCCCACCCCAAAAGCATCAAAGGCACCCGGTCCCGGAGCAGCCACGCGCGGCCGGTGA
GCCTCGCCACTAGCGGGGGCTCGGAGGAGGAGGACAAAGACGGCGGGGTGCTGTTCCACGTGAA
CAAGAGCGGGTTCCCTATCGACAGCCACACCTGGGAGCGGATGTGGCTGCATGTTGCCAAGGTC
CACCCCAGAGGGGGAGAGATGGTAGGCGCCATCAGAAACGCTGCCTTCCTGGCTAAGCCTTCAA
TTCCCCAGGTCCCAAACTACAGGTTGTCCATGACGATCCCAGACTGGCTCCAGGCCATCCAGAA
TTATATGAAGACACTACAATACAACCATACAGGGACCCAGTTCTTTGAAATCAGGAAAATGCGA
CCTCTGAGCGGGTTAATGGAGACGGCGAAAGAGATGACCCGAGAGTCCTTGCCTATCAAATGCC
TGGAGGCAGTCATCCTGGGCATATATTTAACCAATGGGCAGCCTTCCATTGAGCGGTTCCCTAT
CAGCTTTAAAACCTACTTCTCAGGAAGCTACTTTCACCATGTCGTGCTGGGGATTTACTGCAAT
GGTTACTACGGTTCACTGGGCATGAGCCGAAGGGCGGAGCTGATGGACAAGCCGCTGACCTTTA
GGACTCTGAGTGACCTTGTCTTTGACTTTGAAGACTCCTATAAGAAATACCTTCACACGGTCAA
GAAGGTCAAGATTGGGCTGTACGTCCCCCATGAGCCTCACAGCTTCCAGCCCATCGAGTGGAAG
CAACTTGTCCTCAATGTCTCAAAGATGCTGAGGGCTGACATCAGGAAGGAGCTGGAGAAGTACG
CCAGGGACATGCGGATGAAGATCTTGAAACCTGCAAGTGGCCACTCTCCAACCCAAGTGAGAAT
CCGGGGAAAGTCCCTGTCTCCACGGAGGAGACAAGCAAGCCCTCCGAGGAGGCTCGGCAGGCGA
GACAAATCAACTGAAGAGAACTACACCATCTTTGACAACAAGGTGGAAATAACCAGGAGCAAGA
GTTCCCCAGAGTCATTCAGCAGCAGACCCACCTCTACTGGGCTTTATGAACCAAGGCAAAGAGT
TTGCATTAACAACCAACGTGGCAAGATGAAAGTGTTGAAGGCCAGTCATACCCTAGACTTGTCC
AGCCCTGGCAGGCCTCTGACTGAGACGGTCTCCAGCCAAGACAATCGGCCACACCAGCACCTTC
ATCTGCATCCGAGGAAGACAGCTGTTAGACAGCTACAGTTGCCTGCTCTGACCGAGAAGAAGGT
GGCTGACCTCAGTACTCTGAACGAAGTGGGCTATCAGATCCGGATCTAGCCAGGCAAGGCCAGC
AAGGCTTCTATGGTGCTCTTCTCTGCGCTTTACCCAGCAGCTTCAGGAGGAACTGCAACTTGTG
GAGTTTTGATTTTGAAGGATTTACCTGGAGATAGAATCTGAGTGGGTTTTTGAAAAACTCACTG
GTCAGCAGGCATGACTGGGCTGAAGTGACGGACAAACCCCTGGGTTGACTGACTCCCTCACTCA
GGATCTCAAGAACAATGTTACTGCAGTTTTCTATTTTTCCATTTGCCGACTTTCCGCTTGCTTT
GGACATTACGCCTCGGCTATAGTAACCGTTTGTGGAGTCCCCTCCCACTTTTGGTACAGCAGGC
AGCTCAGCCAGTACCGCCGTCTTCTCAGCAATAACAAGCGAGGATGGGTGGCTTCTTTAAACAG
TTGATATTACCTCAGCGTTTGGCATCAGATATGCAGTCTTAATGAGTTTTATATTCTATTTGTA
TTGTTTTCCTACAGGGATCTCGATGGTCTGGAGGGTTTTTGTTGTTTTTTCTGGTTCACACGTG
AGATGAGATTTAAGTTATATGCAGATGCTTTAGAAGCACTGAAGTTCTGGCAATAAGGGAAACA
GTGGGGTCTTGGAGTCTCTTTCCTTAAAGCATCTGCTGACAGGTTTTCTCCTAACAAGCATGTT
AAGAAGCTCTAGCCCATGCTGTTGCCAACAGTTAAGCCTTTTCTGAGTCAGGCAAAAAGCACAA
GAGACCATGTGTTCCTGAAAACACAGCAGTGCTGAGACTTCTCAGACAGGAGGGCAGACGTCTG
GTCAGCCTTGGCTCTTAGTGGCTCCTGGTAGTTAGTGTTCTGCTGTCTTTCATGAGGGTAGACA
TGTTTTCCAGGAGCTTGTCTTAGGCGCCACTTCATGGCCTTAGGAGGCACTGGGGGAAGCCAGG
ACCTTAAGCCTGTCTTAAGGGAGGAGTTTCAGCACAGTGCTCTGCCTCAGTGTTACCCAGGCCT
AGAGCACAGTGAGCCTGCCTGTGGCCACTCCAGCACAGCTTCTGCTCGCACCACGAGGAGGAAG
CACAGCTTCAAGTCATTCATCTTAGTGGTCACCATGCCAACTCAGGAGAGCAGAGGCCCAGCTG
CAGCTGAGTGGCTGGCCCCCAGAGTTCAGCATGCTCCCTTTTGGCTGTGACTGGGGAGCTCTAA
GAAGTCAACGTCTGCTCACTAAGTCTTTGCCAGGAAAACCCTAGGGCCACAAGGAGGGCAAAGG
TGTGTGCAGAAAAAAAAAAAACAAAAAAAAAAAACAAAAAAACAACCCACTCCCCACTCCAGCC
AGCATTATTAATGAAAAGTTGTTTGCTTGGAAAGCTTAGTGTCCTTTATAGGACAGGACCAGGA
AACTAAATCAGTGTGAGCTTCAAATTCTCAACTCAATGGCTTTCTTCAAGAATCCTGTTACTGC
AGTTCAAGGTGAGTTATGGGGCCCAGGCGTGTGCTCAGAGCCTCTGGTTTGACGCCCAGCACCC
GAGGAAGCCCCACCCCCCTCCACATGTCCTCACGATCCCTGTTGTCAGGGCCATGTGCACTGAA
ATGTTCCAAGAAGCAATCTGGTGAGTGCAGCCACCAGGCCTGTGTTCAAGGTCAGCTCACAGAG
ACACAGCACTGAACATCAGGACAACCTTGATGTGTGGCAACAGCAGGCAGCTGTGACACTGTCA
TCTAATCTCTTCCACAACCACCTGATTCTTAGGCTCTTCTTTCAAGGCAGGGTTGGTCAGAAAC
ATTTAAAAGGCTCTTTATCACTCAATTTTACTGCCTGTAGTCACACTAAGACAGAAGCAAGCCC
CAAACACCTACATTCTAATGCAATCGTTTACAGTAAGACAGCAAAAGTGAACCCAGCTTGTCTT
ACCTCAGACTGACCTTCTGTCTGGCAGTGATGTAGATGAAGAGGAAAACTGAGCTGACAGAAGC
GAGTTTATCCTGTGCACCACGGCAAGACGCACAGAGCTGGATAAGGACGTGAGCCGACTGCTAC
TGACTGTGAAAGTGGCCTGGGTGCTTTCTGACATGCGGGGGGTGGGGGGGGACGGGACCGTGAG
CACGCCGCCCCTTTCCATGAGTCAGCTGTTTCCTAGGGTGTCCTCAGCAGAGCGAGGTCATCAA
AGGGCAGCCTTTGTAACCCCTCAGCTCACTGCAAGCCTTTCGTACACTAGACTTTTATGTACAA
CCTTGTACAATGTTTTTGACGTACAACTCAGATTCTTGTTTATTCTTAGACTTTGATCTGGCCA
ATACATTTTTAAAAAAATCTTTCAGATGAACCGTGATTGCTTTAGTGGGTATTTTTCTAAGTAC
ATGAAGACTTGATGGTATTCCACAGAACACCACAAGTGCATGCTTCAGGCTCAAATCTCTCTCA
TGTGTCCACACACAGCATGGAACTGTAATAAAACTGATCTGGAAACTGAGGA

hide sequence

RefSeq Acc Id:

XM_039090995 ⟹ XP_038946923

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	105,070,749 - 105,092,324 (-)	NCBI
mRatBN7.2	13	102,539,610 - 102,561,204 (-)	NCBI

RefSeq Acc Id:

XM_039090996 ⟹ XP_038946924

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	105,060,858 - 105,092,194 (-)	NCBI
mRatBN7.2	13	102,529,719 - 102,561,003 (-)	NCBI

RefSeq Acc Id:

XM_063272551 ⟹ XP_063128621

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	105,060,858 - 105,092,198 (-)	NCBI

RefSeq Acc Id:

XM_063272552 ⟹ XP_063128622

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	105,070,749 - 105,092,321 (-)	NCBI

RefSeq Acc Id:

XR_001840789

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	105,067,683 - 105,092,324 (-)	NCBI
mRatBN7.2	13	102,529,719 - 102,561,204 (-)	NCBI
Rnor_6.0	13	109,521,191 - 109,552,607 (-)	NCBI

Sequence:

show sequence

ACTCAGTTATTACTGTCACAGAATAACATTCGAGAATGGGATATGGAATGGGGCGACGACCGCC
TCAGCTCCAACAGCCTTCTGCAGCAATGAGGCCGACCCGAGGCCGGGCCGGTGAGCGGGGTTCT
CTTCGCGCGTCCTGCGGCCGCGAGAGTTAAAGGCCACCCCCGCGGGGCCCTGATCCCCGGCGTG
CCCGCGTCCTCCGCCCCCTCGCCGCGTGCCCCTCACCATGACCGGCTCCGCCGCCGACACTCAC
CGCTGCCCCCACCCCAAAAGCATCAAAGGCACCCGGTCCCGGAGCAGCCACGCGCGGCCGGTGA
GCCTCGCCACTAGCGGGGGCTCGGAGGAGGAGGACAAAGACGGCGGGGTGCTGTTCCACGTGAA
CAAGAGCGGGTTCCCTATCGACAGCCACACCTGGGAGCGGATGTGGCTGCATGTTGCCAAGGTC
CACCCCAGAGGGGGAGAGATGGTAGGCGCCATCAGAAACGCTGCCTTCCTGGCTAAGCCTTCAA
TTCCCCAGGTCCCAAACTACAGGTTGTCCATGACGATCCCAGACTGGCTCCAGGCCATCCAGAA
TTATATGAAGACACTACAATACAACCATACAGGGACCCAGTTCTTTGAAATCAGGAAAATGCGA
CCTCTGAGCGGGTTAATGGAGACGGCGAAAGAGATGACCCGAGAGTCCTTGCCTATCAAATGCC
TGGAGGCAGTCATCCTGGGCATATATTTAACCAATGGGCAGCCTTCCATTGAGCGGTTCCCTAT
CAGCTTTAAAACCTACTTCTCAGGAAGCTACTTTCACCATGTCGTGCTGGGGATTTACTGCAAT
GGTTACTACGGTTCACTGGGCATGAGCCGAAGGGCGGAGCTGATGGACAAGCCGCTGACCTTTA
GGACTCTGAGTGACCTTGTCTTTGACTTTGAAGACTCCTATAAGAAATACCTTCACACGGTCAA
GAAGGTCAAGATTGGGCTGTACGTCCCCCATGAGCCTCACAGCTTCCAGCCCATCGAGTGGAAG
CAACTTGTCCTCAATGTCTCAAAGATGCTGAGGGCTGACATCAGGAAGGAGCTGGAGAAGTACG
CCAGGGACATGCGGATGAAGATCTTGAAACCTGCAAGTGGCCACTCTCCAACCCAAGTGAGAAT
CCGGGGAAAGTCCCTGTCTCCACGGAGGAGACAAGCAAGCCCTCCGAGGAGGCTCGGCAGGCGA
GACAAATCGGACCGGCTTACCTTTGTGCCCAGCAGGATATGGCTGCCGTCAGCCAGTAGTGGTG
CAGGGATGCATCCTCATCCTTGGCTAACTACCATAGTCTGGAGATGCTGCCACAGCTCCTTAGG
TCAAAATGACTCATATAAGATATGACAGTTGACCTGCTGAGAATCTCCAGGTTTAGCATGGACA
GTTAGCAGAGACTTGCTAAAATGACAGGTGTCCAGGACTTCTGTGACAAGAAAGGCCGAGATGT
GGATGCTGCAGCATATGGCCATCTTAGAGAGGCCAATGGCTTCCGTGTATGGCCTTGCAGTCTT
GCCCTCAATGCCTGTCTCTTGACCTTGACACCCATCCTCACCACATCATCTCTGACCTTGGCGC
CCATCCTCACTGAGGCCAAGCTCTCTTGACTCAGTCATCAGTTCCAGCTATGCTGTCGTCCAGA
ACCGTGAATCCTTCCTGACAGGTCAATGACACAGACCCAGCAGCAGAAAGGGAGACCTGTCTTT
TGGTCTATTGTCCCCTCTGTCCATGAAGAACTGAAGAGAACTACACCATCTTTGACAACAAGGT
GGAAATAACCAGGAGCAAGAGCCAAGACAATCGGCCACACCAGCACCTTCATCTGCATCCGAGG
AAGACAGCTGTTAGACAGCTACAGTTGCCTGCTCTGACCGAGAAGAAGGTGGCTGACCTCAGTA
CTCTGAACGAAGTGGGCTATCAGATCCGGATCTAGCCAGGCAAGGCCAGCAAGGCTTCTATGGT
GCTCTTCTCTGCGCTTTACCCAGCAGCTTCAGGAGGAACTGCAACTTGTGGAGTTTTGATTTTG
AAGGATTTACCTGGAGATAGAATCTGAGTGGGTTTTTGAAAAACTCACTGGTCAGCAGGCATGA
CTGGGCTGAAGTGACGGACAAACCCCTGGGTTGACTGACTCCCTCACTCAGGATCTCAAGAACA
ATGTTACTGCAGTTTTCTATTTTTCCATTTGCCGACTTTCCGCTTGCTTTGGACATTACGCCTC
GGCTATAGTAACCGTTTGTGGAGTCCCCTCCCACTTTTGGTACAGCAGGCAGCTCAGCCAGTAC
CGCCGTCTTCTCAGCAATAACAAGCGAGGATGGGTGGCTTCTTTAAACAGTTGATATTACCTCA
GCGTTTGGCATCAGATATGCAGTCTTAATGAGTTTTATATTCTATTTGTATTGTTTTCCTACAG
GGATCTCGATGGTCTGGAGGGTTTTTGTTGTTTTTTCTGGTTCACACGTGAGATGAGATTTAAG
TTATATGCAGATGCTTTAGAAGCACTGAAGTTCTGGCAATAAGGGAAACAGTGGGGTCTTGGAG
TCTCTTTCCTTAAAGCATCTGCTGACAGGTTTTCTCCTAACAAGCATGTTAAGAAGCTCTAGCC
CATGCTGTTGCCAACAGTTAAGCCTTTTCTGAGTCAGGCAAAAAGCACAAGAGACCATGTGTTC
CTGAAAACACAGCAGTGCTGAGACTTCTCAGACAGGAGGGCAGACGTCTGGTCAGCCTTGGCTC
TTAGTGGCTCCTGGTAGTTAGTGTTCTGCTGTCTTTCATGAGGGTAGACATGTTTTCCAGGAGC
TTGTCTTAGGCGCCACTTCATGGCCTTAGGAGGCACTGGGGGAAGCCAGGACCTTAAGCCTGTC
TTAAGGGAGGAGTTTCAGCACAGTGCTCTGCCTCAGTGTTACCCAGGCCTAGAGCACAGTGAGC
CTGCCTGTGGCCACTCCAGCACAGCTTCTGCTCGCACCACGAGGAGGAAGCACAGCTTCAAGTC
ATTCATCTTAGTGGTCACCATGCCAACTCAGGAGAGCAGAGGCCCAGCTGCAGCTGAGTGGCTG
GCCCCCAGAGTTCAGCATGCTCCCTTTTGGCTGTGACTGGGGAGCTCTAAGAAGTCAACGTCTG
CTCACTAAGTCTTTGCCAGGAAAACCCTAGGGCCACAAGGAGGGCAAAGGTGTGTGCAGAAAAA
AAAAAAACAAAAAAAAAAAACAAAAAAACAACCCACTCCCCACTCCAGCCAGCATTATTAATGA
AAAGTTGTTTGCTTGGAAAGCTTAGTGTCCTTTATAGGACAGGACCAGGAAACTAAATCAGTGT
GAGCTTCAAATTCTCAACTCAATGGCTTTCTTCAAGAATCCTGTTACTGCAGTTCAAGGTGAGT
TATGGGGCCCAGGCGTGTGCTCAGAGCCTCTGGTTTGACGCCCAGCACCCGAGGAAGCCCCACC
CCCCTCCACATGTCCTCACGATCCCTGTTGTCAGGGCCATGTGCACTGAAATGTTCCAAGAAGC
AATCTGGTGAGTGCAGCCACCAGGCCTGTGTTCAAGGTCAGCTCACAGAGACACAGCACTGAAC
ATCAGGACAACCTTGATGTGTGGCAACAGCAGGCAGCTGTGACACTGTCATCTAATCTCTTCCA
CAACCACCTGATTCTTAGGCTCTTCTTTCAAGGCAGGGTTGGTCAGAAACATTTAAAAGGCTCT
TTATCACTCAATTTTACTGCCTGTAGTCACACTAAGACAGAAGCAAGCCCCAAACACCTACATT
CTAATGCAATCGTTTACAGTAAGACAGCAAAAGTGAACCCAGCTTGTCTTACCTCAGACTGACC
TTCTGTCTGGCAGTGATGTAGATGAAGAGGAAAACTGAGCTGACAGAAGCGAGTTTATCCTGTG
CACCACGGCAAGACGCACAGAGCTGGATAAGGACGTGAGCCGACTGCTACTGACTGTGAAAGTG
GCCTGGGTGCTTTCTGACATGCGGGGGGTGGGGGGGGACGGGACCGTGAGCACGCCGCCCCTTT
CCATGAGTCAGCTGTTTCCTAGGGTGTCCTCAGCAGAGCGAGGTCATCAAAGGGCAGCCTTTGT
AACCCCTCAGCTCACTGCAAGCCTTTCGTACACTAGACTTTTATGTACAACCTTGTACAATGTT
TTTGACGTACAACTCAGATTCTTGTTTATTCTTAGACTTTGATCTGGCCAATACATTTTTAAAA
AAATCTTTCAGATGAACCGTGATTGCTTTAGTGGGTATTTTTCTAAGTACATGAAGACTTGATG
GTATTCCACAGAACACCACAAGTGCATGCTTCAGGCTCAAATCTCTCTCATGTGTCCACACACA
GCATGGAACTGTAATAAAACTGATCTGGAAACTGAGGA

hide sequence

RefSeq Acc Id:

XR_005492277

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	105,067,685 - 105,092,323 (-)	NCBI
mRatBN7.2	13	102,536,546 - 102,561,204 (-)	NCBI

RefSeq Acc Id:

XR_010056932

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	105,067,683 - 105,092,321 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001381302	(Get FASTA)	NCBI Sequence Viewer
	NP_001388308	(Get FASTA)	NCBI Sequence Viewer
	NP_001416779	(Get FASTA)	NCBI Sequence Viewer
	NP_001416780	(Get FASTA)	NCBI Sequence Viewer
	NP_001416781	(Get FASTA)	NCBI Sequence Viewer
	NP_001416782	(Get FASTA)	NCBI Sequence Viewer
	NP_001416783	(Get FASTA)	NCBI Sequence Viewer
	XP_006250525	(Get FASTA)	NCBI Sequence Viewer
	XP_008768090	(Get FASTA)	NCBI Sequence Viewer
	XP_008768091	(Get FASTA)	NCBI Sequence Viewer
	XP_038946923	(Get FASTA)	NCBI Sequence Viewer
	XP_038946924	(Get FASTA)	NCBI Sequence Viewer
	XP_063128621	(Get FASTA)	NCBI Sequence Viewer
	XP_063128622	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL94984	(Get FASTA)	NCBI Sequence Viewer
	EDL94985	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000005095
	ENSRNOP00000005095.6
	ENSRNOP00000110878
	ENSRNOP00000110878.1

RefSeq Acc Id:

XP_006250525 ⟸ XM_006250463

- Peptide Label:

isoform X2

- Sequence:

show sequence

MTGSAADTHRCPHPKSIKGTRSRSSHARPVSLATSGGSEEEDKDGGVLFHVNKSGFPIDSHTWE
RMWLHVAKVHPRGGEMVGAIRNAAFLAKPSIPQVPNYRLSMTIPDWLQAIQNYMKTLQYNHTGT
QFFEIRKMRPLSGLMETAKEMTRESLPIKCLEAVILGIYLTNGQPSIERFPISFKTYFSGSYFH
HVVLGIYCNGYYGSLGMSRRAELMDKPLTFRTLSDLVFDFEDSYKKYLHTVKKVKIGLYVPHEP
HSFQPIEWKQLVLNVSKMLRADIRKELEKYARDMRMKILKPASGHSPTQVRIRGKSLSPRRRQA
SPPRRLGRRDKSTEENYTIFDNKVEITRSKSQDNRPHQHLHLHPRKTAVRQLQLPALTEKKVAD
LSTLNEVGYQIRI

hide sequence

RefSeq Acc Id:

XP_008768090 ⟸ XM_008769868

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTGSAADTHRCPHPKSIKGTRSRSSHARPVSLATSGGSEEEDKDGGVLFHVNKSGFPIDSHTWE
RMWLHVAKVHPRGGEMVGAIRNAAFLAKPSIPQVPNYRLSMTIPDWLQAIQNYMKTLQYNHTGT
QFFEIRKMRPLSGLMETAKEMTRESLPIKCLEAVILGIYLTNGQPSIERFPISFKTYFSGSYFH
HVVLGIYCNGYYGSLGMSRRAELMDKPLTFRTLSDLVFDFEDSYKKYLHTVKKVKIGLYVPHEP
HSFQPIEWKQLVLNVSKMLRADIRKELEKYARDMRMKILKPASGHSPTQVRIRGKSLSPRRRQA
SPPRRLGRRDKSTEENYTIFDNKVEITRSKSSPESFSSRPTSTGLYEPRQRVCINNQRGKMKVL
KASHTLDLSSPGRPLTETVSSQDNRPHQHLHLHPRKTAVRQLQLPALTEKKVADLSTLNEVGYQ
IRI

hide sequence

RefSeq Acc Id:

XP_008768091 ⟸ XM_008769869

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTGSAADTHRCPHPKSIKGTRSRSSHARPVSLATSGGSEEEDKDGGVLFHVNKSGFPIDSHTWE
RMWLHVAKVHPRGGEMVGAIRNAAFLAKPSIPQVPNYRLSMTIPDWLQAIQNYMKTLQYNHTGT
QFFEIRKMRPLSGLMETAKEMTRESLPIKCLEAVILGIYLTNGQPSIERFPISFKTYFSGSYFH
HVVLGIYCNGYYGSLGMSRRAELMDKPLTFRTLSDLVFDFEDSYKKYLHTVKKVKIGLYVPHEP
HSFQPIEWKQLVLNVSKMLRADIRKELEKYARDMRMKILKPASGHSPTQVRIRGKSLSPRRRQA
SPPRRLGRRDKSTEENYTIFDNKVEITRSKSSPESFSSRPTSTGLYEPRQRVCINNQRGKMKVL
KASHTLDLSSPGRPLTETVSSQDNRPHQHLHLHPRKTAVRQLQLPALTEKKVADLSTLNEVGYQ
IRI

hide sequence

Ensembl Acc Id:

ENSRNOP00000005095 ⟸ ENSRNOT00000005095

RefSeq Acc Id:	XP_038946924 ⟸ XM_039090996
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038946923 ⟸ XM_039090995
- Peptide Label:	isoform X3

RefSeq Acc Id:	NP_001388308 ⟸ NM_001401379
- Peptide Label:	isoform 1
- UniProtKB:	F1LT12 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001381302 ⟸ NM_001394373
- Peptide Label:	isoform 2
- UniProtKB:	A6JGX8 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063128621 ⟸ XM_063272551
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063128622 ⟸ XM_063272552
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000110878 ⟸ ENSRNOT00000130236

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LT12-F1-model_v2	AlphaFold	F1LT12	1-176	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699109

Promoter ID:

EPDNEW_R9634

Type:

initiation region

Name:

Vash2_1

Description:

vasohibin 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	109,552,535 - 109,552,595	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1564105	AgrOrtholog
BioCyc Gene	G2FUF-16872	BioCyc
Ensembl Genes	ENSRNOG00000003832	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000005095	ENTREZGENE
	ENSRNOT00000005095.9	UniProtKB/TrEMBL
	ENSRNOT00000130236	ENTREZGENE
	ENSRNOT00000130236.1	UniProtKB/TrEMBL
InterPro	Vasohibin	UniProtKB/TrEMBL
NCBI Gene	498309	ENTREZGENE
PANTHER	PTHR15750	UniProtKB/TrEMBL
	TUBULINYL-TYR CARBOXYPEPTIDASE 2	UniProtKB/TrEMBL
Pfam	Vasohibin	UniProtKB/TrEMBL
PhenoGen	Vash2	PhenoGen
RatGTEx	ENSRNOG00000003832	RatGTEx
UniProt	A0ABK0M8G3_RAT	UniProtKB/TrEMBL
	A6JGX8	ENTREZGENE, UniProtKB/TrEMBL
	F1LT12	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Vash2	vasohibin 2	RGD1564105_predicted	similar to RIKEN cDNA B130052G07 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1564105_predicted	similar to RIKEN cDNA B130052G07 (predicted)	LOC498309	similar to RIKEN cDNA B130052G07	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC498309	similar to RIKEN cDNA B130052G07			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message

Imported Disease Annotations - CTD