Kif4b (kinesin family member 4B) - Rat Genome Database

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Pathways
Gene: Kif4b (kinesin family member 4B) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Kif4b
Name: kinesin family member 4B
RGD ID: 1564044
Description: Predicted to enable microtubule motor activity. Predicted to be involved in mitotic spindle organization and spindle elongation. Predicted to be located in cytosol; microtubule; and nucleus. Predicted to be part of microtubule associated complex. Orthologous to human KIF4B (kinesin family member 4B).
Type: pseudo (Ensembl: protein-coding)
RefSeq Status: INFERRED
Previously known as: chromosome-associated kinesin KIF4A-like; LOC299255; RGD1564044; similar to kinesin family member 4A
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Related Functional Gene: Kif4a  
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86126,126,615 - 126,130,456 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6126,126,559 - 126,130,795 (+)EnsemblGRCr8
mRatBN7.26120,397,064 - 120,400,905 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl6120,397,005 - 120,401,245 (+)EnsemblmRatBN7.2
Rnor_6.06125,134,351 - 125,138,909 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.06134,354,513 - 134,357,711 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46125,410,512 - 125,420,474 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera6117,923,809 - 117,929,195 (+)NCBICelera
Cytogenetic Map6q32NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Kif4b
29 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331797Bp213Blood pressure QTL 2133.291arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)6114241077147156653Rat
4145118Mcs26Mammary carcinoma susceptibility QTL 260.0001mammary gland integrity trait (VT:0010552)post-insult time to mammary tumor formation (CMO:0000345)6112483610147156653Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
71111Iddm8Insulin dependent diabetes mellitus QTL 81.90.002blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)6110921244147156653Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
1358355Srcrt4Stress Responsive Cort QTL 46.39blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)6106095977147156653Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
737976Pia24Pristane induced arthritis QTL 24joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)6118366855147156653Rat
1298087Iddm18Insulin dependent diabetes mellitus QTL 180.0001urine glucose amount (VT:0001758)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)6122236101147156653Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat
2293085Iddm29Insulin dependent diabetes mellitus QTL 297.66blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)6121444670147156653Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000096605   ⟹   ENSRNOP00000095198
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6126,126,559 - 126,130,795 (+)Ensembl
mRatBN7.2 Ensembl6120,397,005 - 120,401,245 (+)Ensembl
RefSeq Acc Id: XM_017594497   ⟹   XP_017449986
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26120,394,401 - 120,401,658 (+)NCBI
Rnor_6.06125,134,351 - 125,138,909 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039113348   ⟹   XP_038969276
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.26120,394,401 - 120,401,659 (+)NCBI
Protein Sequences
Ensembl Protein ENSRNOP00000095198.1
RefSeq Acc Id: XP_017449986   ⟸   XM_017594497
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_038969276   ⟸   XM_039113348
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000095198   ⟸   ENSRNOT00000096605
Protein Domains
Kinesin motor

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564044 AgrOrtholog
BioCyc Gene G2FUF-36475 BioCyc
Ensembl Genes ENSRNOG00000064692 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000096605.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.850.10 UniProtKB/TrEMBL
InterPro Kinesin-like_fam UniProtKB/TrEMBL
  Kinesin_motor_CS UniProtKB/TrEMBL
  Kinesin_motor_dom UniProtKB/TrEMBL
  Kinesin_motor_dom_sf UniProtKB/TrEMBL
  P-loop_NTPase UniProtKB/TrEMBL
NCBI Gene 299255 ENTREZGENE
PANTHER CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED UniProtKB/TrEMBL
  CHROMOSOME-ASSOCIATED KINESIN KIF4A-RELATED UniProtKB/TrEMBL
Pfam KIF21A_4th UniProtKB/TrEMBL
  Kinesin UniProtKB/TrEMBL
PhenoGen Kif4b PhenoGen
PRINTS KINESINHEAVY UniProtKB/TrEMBL
PROSITE KINESIN_MOTOR_1 UniProtKB/TrEMBL
  KINESIN_MOTOR_2 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000064692 RatGTEx
SMART KISc UniProtKB/TrEMBL
Superfamily-SCOP SSF52540 UniProtKB/TrEMBL
UniProt A0A8I6GLI2_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-02 Kif4b  kinesin family member 4B  Kif4b  kinesin family member 4B  Data merged from RGD:149736460 737654 PROVISIONAL
2021-08-09 Kif4b  kinesin family member 4B      Symbol and Name status set to provisional 45752 PROVISIONAL
2008-10-16 Kif4b  kinesin family member 4B  RGD1564044  similar to kinesin family member 4A   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1564044  similar to kinesin family member 4A   RGD1564044_predicted  similar to kinesin family member 4A (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1564044_predicted  similar to kinesin family member 4A (predicted)  LOC299255  similar to kinesin family member 4A  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC299255  similar to kinesin family member 4A      Symbol and Name status set to provisional 70820 PROVISIONAL