Tmem200a (transmembrane protein 200A) - Rat Genome Database

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Gene: Tmem200a (transmembrane protein 200A) Rattus norvegicus
Analyze
Symbol: Tmem200a
Name: transmembrane protein 200A
RGD ID: 1564024
Description: Predicted to be located in membrane. Orthologous to human TMEM200A (transmembrane protein 200A); INTERACTS WITH 3,3',4,4',5-pentachlorobiphenyl; 6-propyl-2-thiouracil; alpha-Zearalanol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC498987; RGD1564024; similar to KIAA1913
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8121,142,500 - 21,242,022 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl121,141,432 - 21,426,175 (+)EnsemblGRCr8
mRatBN7.2119,323,646 - 19,408,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl119,323,829 - 19,406,453 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx119,100,670 - 19,181,589 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0125,102,651 - 25,183,570 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0119,300,535 - 19,381,454 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0120,330,670 - 20,413,921 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl120,331,976 - 20,412,381 (+)Ensemblrn6Rnor6.0
Rnor_5.0121,818,826 - 21,898,480 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4119,783,813 - 19,869,008 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera117,715,224 - 17,795,796 (+)NCBICelera
Cytogenetic Map1p12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data
Tmem200a
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8121,142,500 - 21,242,022 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl121,141,432 - 21,426,175 (+)EnsemblGRCr8
mRatBN7.2119,323,646 - 19,408,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl119,323,829 - 19,406,453 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx119,100,670 - 19,181,589 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0125,102,651 - 25,183,570 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0119,300,535 - 19,381,454 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0120,330,670 - 20,413,921 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl120,331,976 - 20,412,381 (+)Ensemblrn6Rnor6.0
Rnor_5.0121,818,826 - 21,898,480 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4119,783,813 - 19,869,008 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera117,715,224 - 17,795,796 (+)NCBICelera
Cytogenetic Map1p12NCBI
TMEM200A
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386130,365,531 - 130,443,067 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6130,365,404 - 130,443,424 (+)Ensemblhg38GRCh38
GRCh376130,687,162 - 130,764,212 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366130,799,955 - 130,805,905 (+)NCBIBuild 36Build 36hg18NCBI36
Build 346130,799,954 - 130,805,901NCBI
Celera6131,504,667 - 131,510,617 (+)NCBICelera
Cytogenetic Map6q23.1NCBI
HuRef6128,268,803 - 128,345,589 (+)NCBIHuRef
CHM1_16130,950,488 - 131,027,285 (+)NCBICHM1_1
T2T-CHM13v2.06131,560,183 - 131,637,851 (+)NCBIT2T-CHM13v2.0
Tmem200a
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391025,867,080 - 25,955,713 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1025,788,229 - 25,954,950 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381025,991,182 - 26,079,209 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1025,912,331 - 26,079,052 (-)Ensemblmm10GRCm38
MGSCv371025,710,992 - 25,798,858 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361025,680,601 - 25,768,066 (-)NCBIMGSCv36mm8
Celera1026,908,030 - 26,996,142 (-)NCBICelera
Cytogenetic Map10A4NCBI
cM Map1013.03NCBI
Tmem200a
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543611,257,029 - 11,268,167 (+)Ensembl
ChiLan1.0NW_00495543611,257,029 - 11,268,167 (+)NCBIChiLan1.0ChiLan1.0
TMEM200A
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25150,369,838 - 150,447,663 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16148,276,609 - 148,354,389 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06128,164,155 - 128,241,703 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16132,270,737 - 132,348,206 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6132,345,204 - 132,346,679 (+)EnsemblpanPan2panpan1.1
TMEM200A
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1168,843,121 - 68,850,463 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl168,791,976 - 68,849,844 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha169,541,530 - 69,600,207 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0169,007,359 - 69,066,105 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl169,007,396 - 69,066,131 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1168,928,571 - 68,987,060 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0168,709,535 - 68,768,340 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0169,356,859 - 69,415,733 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmem200a
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946118,935,957 - 119,006,945 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_004936790957,118 - 958,593 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_004936790955,111 - 1,026,637 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM200A
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl132,961,754 - 33,033,019 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1132,958,781 - 33,033,107 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2136,389,398 - 36,458,419 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM200A
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11343,135,826 - 43,215,344 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1343,137,294 - 43,138,769 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604015,273,315 - 15,353,313 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem200a
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247534,596,034 - 4,670,661 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247534,595,950 - 4,670,661 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmem200a
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12212,016,632 - 212,095,765 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmem200a
752 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:111
Count of miRNA genes:87
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000070858
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313090Bmd69Bone mineral density QTL 694.40.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)1529322934184556Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
70179Xhs2X-ray hypersensitivity QTL 23.2intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)1143965634Rat
1354647Despr8Despair related QTL 80.0000341locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)1126564886Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
2313070Bss52Bone structure and strength QTL 524.40.0001body length (VT:0001256)body length (CMO:0000013)1529322934184556Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
1600360Mcs16Mammary carcinoma susceptibility QTL 162.4mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)1126564886Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
2317755Glom22Glomerulus QTL 223.8urine protein amount (VT:0005160)urine protein level (CMO:0000591)1134184556Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat
1300170Rf6Renal function QTL 63.14renal blood flow trait (VT:2000006)absolute change in renal blood flow rate (CMO:0001168)1128483164Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
2313053Bss51Bone structure and strength QTL 513.80.0001tibia length (VT:0004357)tibia length (CMO:0000450)1529322934184556Rat

Markers in Region
D1Rat6  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2119,333,571 - 19,333,836 (+)MAPPERmRatBN7.2
Rnor_6.0120,341,560 - 20,341,824NCBIRnor6.0
Rnor_5.0121,827,911 - 21,828,175UniSTSRnor5.0
RGSC_v3.4119,793,567 - 19,793,832RGDRGSC3.4
RGSC_v3.4119,793,568 - 19,793,832UniSTSRGSC3.4
Celera117,724,799 - 17,725,063UniSTS
RGSC_v3.1119,793,630 - 19,793,894RGD
RH 3.4 Map1182.9RGD
RH 3.4 Map1182.9UniSTS
RH 2.0 Map1111.9RGD
SHRSP x BN Map112.5699RGD
Cytogenetic Map1p12UniSTS
BF397018  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2119,381,253 - 19,381,411 (+)MAPPERmRatBN7.2
Rnor_6.0120,388,808 - 20,388,965NCBIRnor6.0
Rnor_5.0121,875,081 - 21,875,238UniSTSRnor5.0
RGSC_v3.4119,845,941 - 19,846,098UniSTSRGSC3.4
Celera117,772,412 - 17,772,569UniSTS
RH 3.4 Map1185.6UniSTS
Cytogenetic Map1p12UniSTS
BF398380  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr8121,217,769 - 21,217,985 (+)Marker Load Pipeline
mRatBN7.2119,398,445 - 19,398,661 (+)MAPPERmRatBN7.2
Rnor_6.0120,405,995 - 20,406,210NCBIRnor6.0
Rnor_5.0121,892,090 - 21,892,305UniSTSRnor5.0
RGSC_v3.4119,863,826 - 19,864,041UniSTSRGSC3.4
Celera117,789,582 - 17,789,797UniSTS
RH 3.4 Map1179.9UniSTS
Cytogenetic Map1p12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 9 61 140 86 85 54 27 54 6 262 117 10 119 67 92 31 13 13

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109135 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443794 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443797 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443798 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443799 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443800 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758623 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270483 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270487 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270490 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270497 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270500 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270504 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270505 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010055953 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473994 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000070858   ⟹   ENSRNOP00000066628
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl121,143,332 - 21,224,234 (+)Ensembl
mRatBN7.2 Ensembl119,323,874 - 19,404,603 (+)Ensembl
Rnor_6.0 Ensembl120,331,976 - 20,412,381 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000111415   ⟹   ENSRNOP00000081172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl121,176,351 - 21,224,674 (+)Ensembl
mRatBN7.2 Ensembl119,357,030 - 19,404,603 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117712   ⟹   ENSRNOP00000087765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl121,219,803 - 21,226,327 (+)Ensembl
mRatBN7.2 Ensembl119,356,973 - 19,406,453 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117886   ⟹   ENSRNOP00000080014
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl121,143,360 - 21,226,831 (+)Ensembl
mRatBN7.2 Ensembl119,323,829 - 19,406,453 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000132076   ⟹   ENSRNOP00000101486
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl121,141,432 - 21,371,215 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000133225   ⟹   ENSRNOP00000104774
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl121,142,860 - 21,426,175 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000154654   ⟹   ENSRNOP00000101056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl121,220,404 - 21,224,674 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163107   ⟹   ENSRNOP00000105918
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl121,176,302 - 21,224,674 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000168778   ⟹   ENSRNOP00000103898
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl121,176,197 - 21,224,674 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000171694   ⟹   ENSRNOP00000111263
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl121,142,412 - 21,228,573 (+)Ensembl
RefSeq Acc Id: NM_001109135   ⟹   NP_001102605
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8121,143,326 - 21,224,234 (+)NCBI
mRatBN7.2119,323,997 - 19,404,911 (+)NCBI
Rnor_6.0120,331,976 - 20,412,381 (+)NCBI
Rnor_5.0121,818,826 - 21,898,480 (+)NCBI
RGSC_v3.4119,783,813 - 19,869,008 (+)RGD
Celera117,715,224 - 17,795,796 (+)RGD
Sequence:
RefSeq Acc Id: XM_063270483   ⟹   XP_063126553
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8121,142,500 - 21,224,240 (+)NCBI
RefSeq Acc Id: XM_063270487   ⟹   XP_063126557
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8121,142,500 - 21,224,240 (+)NCBI
RefSeq Acc Id: XM_063270490   ⟹   XP_063126560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8121,143,190 - 21,224,240 (+)NCBI
RefSeq Acc Id: XM_063270497   ⟹   XP_063126567
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8121,144,295 - 21,224,240 (+)NCBI
RefSeq Acc Id: XM_063270500   ⟹   XP_063126570
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8121,169,715 - 21,224,240 (+)NCBI
RefSeq Acc Id: XM_063270504   ⟹   XP_063126574
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8121,144,295 - 21,224,240 (+)NCBI
RefSeq Acc Id: XM_063270505   ⟹   XP_063126575
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8121,188,831 - 21,224,240 (+)NCBI
RefSeq Acc Id: XR_010055953
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8121,142,500 - 21,242,022 (+)NCBI
RefSeq Acc Id: NP_001102605   ⟸   NM_001109135
- UniProtKB: A0A8I6GGC7 (UniProtKB/TrEMBL),   A6JPG3 (UniProtKB/TrEMBL),   A0A8I5ZSF5 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000066628   ⟸   ENSRNOT00000070858
Ensembl Acc Id: ENSRNOP00000087765   ⟸   ENSRNOT00000117712
Ensembl Acc Id: ENSRNOP00000080014   ⟸   ENSRNOT00000117886
Ensembl Acc Id: ENSRNOP00000081172   ⟸   ENSRNOT00000111415
RefSeq Acc Id: XP_063126557   ⟸   XM_063270487
- Peptide Label: isoform X1
- UniProtKB: D3Z9K1 (UniProtKB/TrEMBL),   A0A8I5ZSF5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126553   ⟸   XM_063270483
- Peptide Label: isoform X1
- UniProtKB: D3Z9K1 (UniProtKB/TrEMBL),   A0A8I5ZSF5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126560   ⟸   XM_063270490
- Peptide Label: isoform X1
- UniProtKB: D3Z9K1 (UniProtKB/TrEMBL),   A0A8I5ZSF5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126567   ⟸   XM_063270497
- Peptide Label: isoform X1
- UniProtKB: D3Z9K1 (UniProtKB/TrEMBL),   A0A8I5ZSF5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126574   ⟸   XM_063270504
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GGC7 (UniProtKB/TrEMBL),   A6JPG3 (UniProtKB/TrEMBL),   A0A8I5ZSF5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126570   ⟸   XM_063270500
- Peptide Label: isoform X1
- UniProtKB: D3Z9K1 (UniProtKB/TrEMBL),   A0A8I5ZSF5 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126575   ⟸   XM_063270505
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GGC7 (UniProtKB/TrEMBL),   A6JPG3 (UniProtKB/TrEMBL),   A0A8I5ZSF5 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000101056   ⟸   ENSRNOT00000154654
Ensembl Acc Id: ENSRNOP00000111263   ⟸   ENSRNOT00000171694
Ensembl Acc Id: ENSRNOP00000104774   ⟸   ENSRNOT00000133225
Ensembl Acc Id: ENSRNOP00000103898   ⟸   ENSRNOT00000168778
Ensembl Acc Id: ENSRNOP00000101486   ⟸   ENSRNOT00000132076
Ensembl Acc Id: ENSRNOP00000105918   ⟸   ENSRNOT00000163107

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3Z9K1-F1-model_v2 AlphaFold D3Z9K1 1-485 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1564024 AgrOrtholog
BioCyc Gene G2FUF-62148 BioCyc
Ensembl Genes ENSRNOG00000047783 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000070858 ENTREZGENE
  ENSRNOT00000070858.4 UniProtKB/TrEMBL
  ENSRNOT00000111415 ENTREZGENE
  ENSRNOT00000111415.2 UniProtKB/TrEMBL
  ENSRNOT00000117712.2 UniProtKB/TrEMBL
  ENSRNOT00000117886 ENTREZGENE
  ENSRNOT00000117886.2 UniProtKB/TrEMBL
  ENSRNOT00000132076.1 UniProtKB/TrEMBL
  ENSRNOT00000133225.1 UniProtKB/TrEMBL
  ENSRNOT00000154654 ENTREZGENE
  ENSRNOT00000154654.1 UniProtKB/TrEMBL
  ENSRNOT00000163107.1 UniProtKB/TrEMBL
  ENSRNOT00000168778.1 UniProtKB/TrEMBL
  ENSRNOT00000171694.1 UniProtKB/TrEMBL
InterPro DUF2371_TMEM200 UniProtKB/TrEMBL
KEGG Report rno:498987 UniProtKB/TrEMBL
NCBI Gene 498987 ENTREZGENE
PANTHER PTHR31815 UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 200A UniProtKB/TrEMBL
Pfam DUF2371 UniProtKB/TrEMBL
PhenoGen Tmem200a PhenoGen
RatGTEx ENSRNOG00000047783 RatGTEx
UniProt A0A8I5ZSF5 ENTREZGENE
  A0A8I6GGC7 ENTREZGENE, UniProtKB/TrEMBL
  A6JPG3 ENTREZGENE, UniProtKB/TrEMBL
  D3Z9K1 ENTREZGENE, UniProtKB/TrEMBL
UniProt Secondary A0A8I5ZSF5 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-03-31 Tmem200a  transmembrane protein 200A  RGD1564024_predicted  similar to KIAA1913 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1564024_predicted  similar to KIAA1913 (predicted)  LOC498987  similar to KIAA1913  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498987  similar to KIAA1913      Symbol and Name status set to provisional 70820 PROVISIONAL