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Gene: Col20a1 (collagen type XX alpha 1 chain) Rattus norvegicus

Analyze

Symbol:

Col20a1 (Ensembl: Arfgap1)

Name:

collagen type XX alpha 1 chain (Ensembl:ADP-ribosylation factor GTPase activating protein 1)

RGD ID:

1563901

Description:

Predicted to be involved in cell adhesion. Predicted to be located in extracellular region. Predicted to be part of collagen trimer. Orthologous to human COL20A1 (collagen type XX alpha 1 chain); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; ammonium chloride; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

collagen alpha-1(XX) chain; collagen, type XX, alpha 1; LOC311716; RGD1563901; similar to Protein KIAA1510 precursor

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	188,477,663 - 188,512,326 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	188,465,648 - 188,511,078 (+)	Ensembl				GRCr8
mRatBN7.2	3	168,102,475 - 168,134,759 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,084,560 - 168,135,309 (+)	Ensembl				mRatBN7.2
Rnor_6.0	3	176,491,292 - 176,526,009 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	176,494,768 - 176,526,018 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	180,201,099 - 180,235,836 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	170,105,596 - 170,136,828 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	164,450,199 - 164,484,907 (-)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

keratosis palmoplantaris striata 1 (ISO)

neuronal ceroid lipofuscinosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3,7,8-Tetrachlorodibenzofuran (EXP)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

aldehydo-D-glucose (ISO)

ammonium chloride (EXP)

aristolochic acid A (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

C60 fullerene (EXP)

carbon nanotube (ISO)

choline (ISO)

chrysene (ISO)

cisplatin (ISO)

Cuprizon (EXP)

D-glucose (ISO)

endosulfan (EXP)

folic acid (ISO)

glucose (ISO)

L-methionine (ISO)

methapyrilene (ISO)

okadaic acid (ISO)

paclitaxel (ISO)

paracetamol (EXP)

silicon dioxide (ISO)

sodium arsenite (ISO)

tamoxifen (ISO)

testosterone (ISO)

tetraphene (ISO)

thioacetamide (EXP)

trichloroethene (EXP)

Triptolide (ISO)

triptonide (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IEA)

Cellular Component

extracellular matrix (IEA)

Molecular Function

GTPase activator activity (IEA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Col20a1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	188,477,663 - 188,512,326 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	188,465,648 - 188,511,078 (+)	Ensembl				GRCr8
mRatBN7.2	3	168,102,475 - 168,134,759 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	168,084,560 - 168,135,309 (+)	Ensembl				mRatBN7.2
Rnor_6.0	3	176,491,292 - 176,526,009 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	176,494,768 - 176,526,018 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	180,201,099 - 180,235,836 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	170,105,596 - 170,136,828 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	164,450,199 - 164,484,907 (-)	NCBI		Celera
Cytogenetic Map	3	q43	NCBI

COL20A1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	20	63,293,186 - 63,334,806 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	20	63,293,186 - 63,334,851 (+)	Ensembl			hg38	GRCh38
GRCh37	20	61,924,538 - 61,966,158 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	20	61,394,983 - 61,432,729 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	20	58,602,014 - 58,639,754 (+)	NCBI		Celera
Cytogenetic Map	20	q13.33	NCBI
HuRef	20	58,649,993 - 58,687,907 (+)	NCBI		HuRef
CHM1_1	20	61,825,622 - 61,863,320 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	20	65,099,069 - 65,141,009 (+)	NCBI		T2T-CHM13v2.0

Col20a1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	180,626,629 - 180,659,338 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	180,628,328 - 180,660,156 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	180,983,323 - 181,017,545 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	180,986,535 - 181,018,363 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	180,721,240 - 180,752,245 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	180,915,943 - 180,947,771 (+)	NCBI		MGSCv36	mm8
Celera	2	185,073,024 - 185,103,996 (+)	NCBI		Celera
Cytogenetic Map	2	H4	NCBI
cM Map	2	103.53	NCBI

Col20a1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955528	847,996 - 875,266 (-)	Ensembl
ChiLan1.0	NW_004955528	847,416 - 878,741 (-)	NCBI	ChiLan1.0	ChiLan1.0

COL20A1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	21	69,082,980 - 69,121,775 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	20	69,074,986 - 69,113,781 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	20	59,678,028 - 59,716,822 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	20	61,218,032 - 61,255,703 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	20	61,219,950 - 61,254,432 (+)	Ensembl			panPan2	panpan1.1

COL20A1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	24	46,998,645 - 47,018,410 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	24	46,998,138 - 47,016,401 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	24	46,184,158 - 46,201,729 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	24	47,954,093 - 47,971,666 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	24	47,952,430 - 47,970,597 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	24	46,969,378 - 46,986,948 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	24	47,093,666 - 47,111,240 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	24	47,849,790 - 47,867,361 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Col20a1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	195,188,176 - 195,224,742 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936514	10,645,429 - 10,672,975 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936514	10,642,919 - 10,674,393 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

COL20A1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	17	62,395,383 - 62,419,054 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

COL20A1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	2	874,205 - 913,666 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	2	876,882 - 912,778 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666050	48,493,726 - 48,557,993 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Col20a1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624741	28,986,897 - 29,018,995 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Col20a1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	158,090,917 - 158,124,553 (+)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	112
Count of miRNA genes:	49
Interacting mature miRNAs:	55
Transcripts:	ENSRNOT00000014858, ENSRNOT00000040270
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
9589106	Insul23	Insulin level QTL 23	13.86	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	3	152055202	189428310	Rat
1559282	Emca5	Estrogen-induced mammary cancer QTL 5	3.9		mammary gland integrity trait (VT:0010552)	percentage of study population developing mammary tumors during a period of time (CMO:0000948)	3	145335553	189428310	Rat
1578653	Vnigr3	Vascular neointimal growth QTL 3	3.1		artery morphology trait (VT:0002191)	artery neointimal hyperplastic lesion area (CMO:0001414)	3	151075912	189428310	Rat
1298068	Bp167	Blood pressure QTL 167		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	161492708	189428310	Rat
1582256	Insul9	Insulin level QTL 9	4.4	0.0016	blood insulin amount (VT:0001560)	absolute change in serum insulin level (CMO:0002038)	3	155759447	189428310	Rat
1582248	Insul7	Insulin level QTL 7	3.9	0.0041	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1578666	Vnigr1	Vascular neointimal growth QTL 1	4.6		artery morphology trait (VT:0002191)	artery lumen area (CMO:0001409)	3	151075912	189428310	Rat
1300161	Rf10	Renal function QTL 10	3.57		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	3	181611379	189428310	Rat
8552791	Vie2	Viral induced encephalitis QTL 2	4.1		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	3	166376089	189428310	Rat
1578656	Vnigr2	Vascular neointimal growth QTL 2	4.2		artery morphology trait (VT:0002191)	lesioned artery residual lumen area (CMO:0001417)	3	151075912	189428310	Rat
631541	Bp81	Blood pressure QTL 81	4		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	144575244	189428310	Rat
1582213	Insul6	Insulin level QTL 6	3.7	0.0009	blood insulin amount (VT:0001560)	calculated serum insulin level (CMO:0000359)	3	155759447	189428310	Rat
1598854	Memor10	Memory QTL 10	2		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	3	166376089	189428310	Rat

Markers in Region

RH144241

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	168,129,524 - 168,129,667 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	176,520,775 - 176,520,917	NCBI	Rnor6.0
Rnor_5.0	3	180,230,602 - 180,230,744	UniSTS	Rnor5.0
RGSC_v3.4	3	170,131,594 - 170,131,736	UniSTS	RGSC3.4
Celera	3	164,455,291 - 164,455,433	UniSTS
RH 3.4 Map	3	1529.7	UniSTS
Cytogenetic Map	3	q43	UniSTS

RH138664

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	168,099,751 - 168,099,899 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	176,491,002 - 176,491,149	NCBI	Rnor6.0
Rnor_5.0	3	180,200,829 - 180,200,976	UniSTS	Rnor5.0
RGSC_v3.4	3	170,101,821 - 170,101,968	UniSTS	RGSC3.4
Celera	3	164,485,059 - 164,485,206	UniSTS
RH 3.4 Map	3	1530.8	UniSTS
Cytogenetic Map	3	q43	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
19	13	78	199	91	90	59	150	59	6	454	271	21	176	97	115	31	26	26

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001427704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008762604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592316	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602703	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602704	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602705	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602706	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602707	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106762	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106764	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039106765	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063283895	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064639	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064640	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064641	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC125642	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000013900 ⟹ ENSRNOP00000013900

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	188,465,648 - 188,477,511 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000040270 ⟹ ENSRNOP00000049790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	188,479,502 - 188,511,078 (+)	Ensembl
mRatBN7.2 Ensembl	3	168,084,560 - 168,135,309 (+)	Ensembl
Rnor_6.0 Ensembl	3	176,494,768 - 176,526,018 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000055038 ⟹ ENSRNOP00000051916

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	188,465,648 - 188,477,513 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000082267 ⟹ ENSRNOP00000073451

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	188,465,648 - 188,477,513 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000144526 ⟹ ENSRNOP00000111758

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	188,479,502 - 188,511,078 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000163325 ⟹ ENSRNOP00000110695

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	188,479,502 - 188,511,078 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172079 ⟹ ENSRNOP00000109161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	188,465,648 - 188,487,142 (+)	Ensembl

RefSeq Acc Id:

NM_001427704 ⟹ NP_001414633

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,479,502 - 188,512,326 (+)	NCBI

RefSeq Acc Id:

XM_008762603 ⟹ XP_008760825

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,477,663 - 188,512,326 (+)	NCBI
mRatBN7.2	3	168,102,475 - 168,134,759 (+)	NCBI
Rnor_6.0	3	176,491,292 - 176,526,009 (+)	NCBI

Sequence:

show sequence

ACTATATAGAACCTTTGGCTGCTTCTTGGAGCCTGCATATAGGGAACTTGTCAGACTATATTCT
ATAAACACAAACCCTGGAGGGCCCTTCCCTTGGGTATATGTAAACAAACACGGCAGGTACTGCT
TAGGCTTCATTCAGGGAGGCCTGGTTAGACTTAAGTCAGACAGCCTGGGCCTGCTGAGCAGTCC
TGGCTGCCAATGCTTGGTCAGGTTATTAGGGAGGTGGGAAAGGAGAAGGTAATACTATCTTGGA
CTGGCTCTTATCTTGTGGCTTGGGTGGACAACCTTTCCTGGACCATGTTGGTGGCCTGGGTGGC
GGGGTTGTCCCTAGAGATTCCGCATCCTTGGGACAAGTGGTGGCTTTGGCCCAGAGATGTCCAG
TGGGAAAGTATGGCCTGCAGAAGGGTTTGTCTATGGGTGGCACTAAAGGGTCAAGGAGTTCTTC
TGACACTTAATGCTGCCTGGAAGTGCCCTGGGAGCCCTTGGTCCTGTTTCCCCTGTACCTAGCA
ATGGCAGGGTTTACTGGGAGCAGGCCCATGTCAGCACTACTCTCACCTGGGGTAACCTGCACCG
CCTACCTTCCTGAGCCACTCCAGCCTGCATGGATTAGGCAAGCTCTGTCTCCCACCAAGTGTCA
TGGGTGGTGGAGTTAATGCTTGTTTGGCTGAAATCAATCTGTGACTTTGGCCAGCTGTTGGGAG
CATAGGTTTTAGCATCAAGGGATGCTGGGCCACCAAGGATATCAGTCTCTCCATTCATGCTTCG
CTCCAGACTTCCTGCCCCAAACAGCCAGACCAGGGGGAACTTTGGGTCAGTCTTGTACCTTTGA
AACCATTAAGGCAATAGTCAGATTCTGTGTAATCACACCTGCTCACTTGTATTGTTACTCCCGT
GTTAGCATCCCCTACTGTCAGACTGGTCCAGGAGGAAGGTAAGCAGGTTCCAGGGCACTCCGAC
CTGGTTTAGTTTGCAGGGGTTATGGTATGGATCTCAGAGCATGGGGATGGGTGTACACATGCCA
TTGCTAGGTACAGGAGAAGCAGGACTGCCAGGCTGGTAAAAGGGCTAACGGGATTTCTAGGCAG
CATGAGGTAGAAAATACAGGGGAATCTACCCAAGGATCATAGTGCAGAGAGGAATGCTGAGCTG
TGTGTGAATGCACGTAGCTATTTCAAGGTTCCTGTGAGCTACAGCTCACAATCTTTATCTGACT
ATGGGAGGGTCTGTAGACACTTAGGACCCTAGGTCCCATATCGTGGGTTGAAGCCCATGTGTAG
TTGAAAATCAGACTGAGGCTGCACTGGACCCATGGGAACTCTGGAGTGGCTAGGTCATGAGTCA
TTCCTGAAGGCAAGAGAAAAGGGCCTTTTATCCCTGGCCCAGCCTACTGGGCCACCTCACCAAG
TTACAGGGTGAAACCATGGGGGTTTCAAGATGGATCAAGAGAGCTTCATTGAGAGTAGAGCTTT
CCCAACCTGTACTGGCTGGAATGGCCTCAGAAGGTGTGAGTAGTGTGGGCATGGGCCTGCTCCT
AGTTCAAGGGCAAACAGGAAGAAAGGGAATAGATGTCACAGACCCCATCCTCAACCCCTAGTGA
CTGGTTGTCTAATGGTCCTTCCCCCAAATAGTCTGGTCAGAGGCTCCCTATGCCCAGTACCCAG
AACTGCACACACTGGCCTTTATTCTCAAGAAGCCTCTGGGACCTCCTCTGCGGGACAAACCTAC
AGTCTCCCACTACCCCTGGTAGGATTCCCAGTACAGTGTGAAATGGGTCCTTTGTGCTGGGACC
ACCATCTCATTCTTGCAAACAAGTTCCAAGCAGCAGCTGATTGGAGGGGGAAAGCCTTAAGGGC
GGGCCTAGTGGTGACATCAGGATAGGGAGCCTTTTCTAAGCTCCAGCCTTGTCACAGTGAGACC
AAGAGGCATTGAAGAGTGAGGAACACTATCCTTGGAGCAGGAGGCTGCTCAGTATGAGCCTCCA
AGGCTCCTACCTCCGCTTCTGCCTCTGGATGTTCTTGGGCACCACCTTGGCACTGGGGCAGGGA
CAAGTAAGTAGCCGTCTGAGGCTGGCAGTACTGCCCGAGGATCGACTGCAGATGAAGTGGAGGG
AAGCAGAGGGAAGTGGCCTTGGCTATTTGGTGCAAGTGACACCTATGGCAGGGGACTTGGAGCA
GGAGCTGGTACTGACCACCAAGACCCCCAAAGCCACTGTGGGTGGCCTGAGCCCTTCCAAGAGC
TACACCTTACAGATCTTCGAGCTCACTGACTCTGGGCCTGTCCTGCTAGCACGAAGGGAGTTTG
TAATTGAGGATCTAAAGAGCCAATCTTTGGGCAGAGGAAGCCGGAGGCTGGCAGGAGCCACCCT
GGAGCCTCCCTCCTTCCCTCTGAGGGACCCAGACTCTGAGAAAACATCTGAGCCCAGCATTGCC
TTCACCTCAAGCAGGGACCTTCCCATTCTCGGAGTGGCCAGTAAGGATCAGAGGAAACTCAAGC
AGGGCCTTGGAGTACAAGACTCTGCCCAGCCAACCCCAGACCTGGAGAGGCAGAGCCACACCGC
AGTCTCTGTGGGAAAGCGAGGGAAGCTAGATGACCCCCAGTTCCAGTGCACACCCCCAACACCT
GCTGACATAATCTTCCTGGTGGATGGGTCCTGGAGCATCGGCCACAACAACTTTCAGCAGGTGA
AAGACTTCCTGGCTAGCATCATCACACACTTTGCAATAGGACCAGATAAAGTCCAAGTAGGTCT
GACTCAGTACAGTGGAGACCCCCAGACCGAGTGGGACCTGAACTCCTTCCACACCAAGGAGCAA
GTGCTAGCAGCAGTACACCACCTCCACTACAAAGGAGGAAACACGTTCACAGGCCTTGCCCTAA
CCCATGTGCTGGGGCAGAACCTGAAGCCAGCAGCAGGTGTCCGTCCAGAGGCAGCCAAAGTGTT
GATTCTGGTGACAGACGGCAAGTCTCAGGATGATGTGCGCACAGCTGCCAGAGTCCTTAAGGAC
CAGGACATTGATGTCTTCACTGTGGGTGTGAAGAATGTCGACGAGGCCGAGCTGAAGCTCCTGG
CATCCCAGCCGCTGGACATCACTGTCCACAACGTGCTGGACTTCCCTCAGCTGACCACCTTAGC
CCCTCTGCTCAGCCGTCTTATTTGCCAAAAAATTCAGGGCAGAGGCCCAGTCAAACCAGCGGCG
GGTACTCGGATCCTGGACCCTCTCCCCACGCCCACCAGACTGACCCTGACCCACGTCACCTCAT
CCAGTATCCACCTGTCTTGGACTCCGGCCTTATACCCACCCCTCAAGTATCTAATTGTATGGCA
GCCTTCTAGGGGTGGTGCCCCCAAGGAGGTGGTGGTGGAGGGGCCTGTCTCATCCATGGAGCTT
GGAAACCTGACCTCCAACACAGAATACTCGGTCTCTGTGCTTCCTGTCTACGAGAGTGGGGTTG
GCAAGAGTCTGCAAGGACGGGCAACCACAGCACCCCTGCCTCCACCTGGGCCACTGACCCTAGC
TGCGGTGACACCCAGAACTCTCCACCTTACCTGGCAGCCCTCTGCTGGGGCCACTCAATACTTG
GTACAGTACTTGCTGGCTGCCTCCACTGGGGAGGAACAAAAGAGAGAGGTACATGTAGGACGGC
CTGAGGTAGTGCTGGACGATCTGGAGCCTGGCCAGGACTATGAGGTTTCAGTGCAGAGCCTTCG
TGGACCAGAGGCCAGTGAGGCCCGGAACATCCATGCCAGGACCCCTGTCCCGGGGCCCCCAAGA
CACCTGAGTTTCTCAGATGTGCGCTACAACTCAACCTGTGTGTCCTGGGAAGCCCAGAGGCCTG
TGCGCCTGGTCAAGGTCAGCTACGTCTCTAGCGATGGCAGCCACTCTGGGCAGATTCAGGTTCC
TGGGAACGTTACCTCAGCTACTCTGGGCCCACTTTCTTCCTCTACCGTGTACACCATCCGAGTC
ACCTGTTTTTACCTCAGGGGTGGTTCCTCCGTGCTGACTGGCCATGTGACCACACAGAAAGCGC
CTAGCCCTAGCCAGTTGTCGGTGACGGAGCTCCCGGGAGATACAGTAAAGCTGTCATGGTTGGC
CACTGCCTTGTCTGGTGTACTTGTTTATCAGATCAAGTGGATGCCCTTGGGAGAGGGGAAGGCC
CATGAGATCTCTGTCCCAGGGACCCTTGGCACAGCCATCTTGCCTGGTCTGATGAAGCATGTGG
AATATGAGATCACCATCCTTGCCTACTATAGGGACGGCACTCGCAGCGACCCCGTGTCCCTCCG
CTACACCCCCTCTGCAGCAAACAGGAGCCCCCCATCCAGCCTGGCCTTGTCCTCGGAGACCCCC
AACAGCCTGCAGGTCAGCTGGGCACCACCAAGTGGCCATGTCCTCCATTACCGGCTCAACTACA
CACTGGCCTCAGGCTCTGGACCAGAGAAATCGATCTCTGTACCAGGCACCAGGAGCCATGTTGT
ACTTCGTGATCTGATGTCTGCCGCCAAGTACAGGGTCCTGGTCTCAGCTGTCTATGGAGCAGGG
GAGAGCATGGCAGTGTCTGCCACATACCGCACAGCAGCCTGCCCAGCCCTGCACCCGGACAGTT
CCCTCTCAGGGTATGACCTGATGATGGCCTTTGGCCTTGTGGCAAAGGAGTATGCCTCTATTCG
AGGGGTGGCTATGGAGCCCTCAGCCTTCGGTGTGGCCCCAACCTTCACTCTCTTCAAGGATGCT
CAACTGATGCGGCGGGTCAGTGACGTCCACCCAGCAACCCTGCCACCAGAACACACCATTGTCT
TCCTTGTGCGTCTACTTCCTGAAACACCCCGGGAAGCCTTTGCACTGTGGCAGATGATGGCTGA
AGACTTCCAGCCTATCCTCGGGGTTCTTCTGGATGCTGGCAGAAAGTCTCTGACTTACTTCAAC
CATGATTCCAGAGCAGCCTTGCAGGAGATCACCTTTGACCTGCAGGATGCAAAGAAGATTTTCT
TTGGAAGCTTCCACAAGGTACATATAGCTGTAGGCCACTCTAAGATCAGACTTTACGTGGACTG
TCGGAAGGTGGCTGAGCGGCCCATTGGGGATGCTGGCAGCCCACCCACAGCTGGTTTCATCACA
CTAGGGAGGCTAGCCAAGGCCAGAGGGCCACGGAGCAGCTCAGCCACATTCCAGCTCCAGATGT
TGCAGATCATGTGCAGCGATACGTGGGCGGACAAGGACAGGTGCTGCGAGCTTCCTGCATTGAG
GGATGGAGAGACATGCCCGGCCTTCCCTTTAGCCTGTACCTACTCATCTGAGACCCCTGGGCCA
CCAGGGCCCCAAGGCCCTCCAGGCCTCCCTGGAAGGAATGGCACTCCAGGACAGCAGGGACACC
CAGGACCCAAGGGAGAGCCTGGCCCACCTGGACAAACAGGACCCGAAGGCCCTGGAGGTCAGCA
GGGGTCACCAGGGACCCAGGGCCGTGCAGTCCAGGGACCCATGGGGCCACCAGGAGCCAAAGGA
GAGAAGGGGGATCACGGCCTCCCGGGCTTGCAGGGCCTCTCTGGCCAGCAAGGCATCCCTGGGA
AAACTGGCCTACAAGGACCAAAGGGAATGAGAGGACTGGAGGGACCTGCTGGGCTGCCTGGACC
ACCTGGCCCCAGGGGATTCCAGGGCTTGGCAGGGGCCAGCGGTACCAGTGGAGAGCAAGGGCCC
CCAGGAGCTGTGGGTCCCACAGGTCTACCAGGGTCCAAAGGTGAACGAGGAGAGAAGGGAGAGC
CACAGTCCCTTGCCACCATCTTCCAGCTGGTGAGCCAGGCCTGCGAGTCAGCCATACGGACACA
CGTGATGAAGCTGAATTCCTTCCTTCATGAGAATGCCCGTCCCCCGATGCCCTTCATGGCAGAG
ACAGCCAAGCTAAGCAGACCCAGAGCTATAGATCCTGGATTACACAACAAGGCTCTACTTCCTG
GAGACTGGGGACATATCCTCCACCATGAGGATGAAGGTGAGCCTGTGGCTATCAGCCACACAAG
CAAACCTGTACTGCAGGAGGTGCAGACCCCAGAGCCCCTGGAGTGAACAGGACCTTCCCTCTGC
CACTTCAACTCGCCCCGTCCTTCCCCAGCACCATCATCCATAATTTTGTCTCAACACTGAGAGC
AACTGTGCTCTGCAGGGGCAGAGAAGGAAACCCAAAGGAAGACCCTGAAGTGGCAGGAGTCGGA
AGGGAGGAGGGTGGGGCTCCTCCTCAAGCCCCTTCTTTATAGCATTTCCAGGTTCAGATAAACT
TGTGCTAGCTCATCA

hide sequence

RefSeq Acc Id:

XM_017592315 ⟹ XP_017447804

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,477,663 - 188,512,326 (+)	NCBI
mRatBN7.2	3	168,102,475 - 168,134,759 (+)	NCBI
Rnor_6.0	3	176,493,709 - 176,524,677 (+)	NCBI

Sequence:

show sequence

AAAAAAAAAAAAAAGAAAAAAGCTCCTCATGTCATGGTGACCCTCAATCATGAAGTTATTTTTG
TTACTATAACTATCACATCTATACTTTTGATCACAACTATAATTTTGATACTATTATGAGTCAT
AATGTAAATATCTGTTTTCCAATAATCGTTGATAATTCCTGTGAAAGGGTCATTAGATGCCCCC
CAACACACACATACACACACACACACAAAGGGGTCACAACTCACAGGTTAACTGCTATTCTTGG
GTGTATTACCCTGCAGCCTTCCTACTGGTCTGGGCTCTGCTCACAGAGCTGGCTTCCCTGCAGA
GGGTAACCTTGAGTATATAGGAAATGCAGGTGCTTTGTTCAGTGGGGTGGGGATCTGGGATCCT
CAGGATTCTTCTCAGGCTCACAAATTTCAGGCTGGGTCATGCTTGTGTCCCCTTCTCCAAAATG
CCACCCCTAGGTGGTGGACTCCCTACCCCATTGACCTCTCAAGTGTTATCTCCCAACTTCTGAG
AGGTCTCAAGGGTTCCCCAGTACTTTTCATACCTACTGCGCCTGCTTCTGCTCTAACCAGAAAT
TGGTCTCACGTGCTTGAGGGCAAGTCACTCAATGTGATGACCTTGATGGTAGGAATCTATCTAA
ACCAATCCTAGACACCATGTGGGGCTGCTGGGTCCTCAAGGTCTTGTTACTCTGGTGATTCCTG
CTGTGACTATGGGTTGTGGCTGTGAACACTGGAAGGGGCATGGGCAGATGTGTTGGACTGGACC
CTTTCAGGGAGAATTGGCTCCCTGCAGAAGGAACATGGAGTTCACAAGGAGGTTGTGCAGCTAA
GGGTCCATTGTTCAGCGGGACGCCTCAGCATGGCTTCAGTGCTGGTCTTCGATCCTCAGTCTTC
ATCGACATCTCCATAATGACAAGCCACAGGCCTCTGGGCATCACACATGTCTGTAGGGACATCC
TGCTGGTCCATAGGAGTGGACGGAGAACTAGCTTTCTGGTCAGGGCAAGGGCAGATGGTTCCTT
AAGTGCTGAAGGGCCTTGACCTCTCCTCCCACAGGCTGCTCAGTATGAGCCTCCAAGGCTCCTA
CCTCCGCTTCTGCCTCTGGATGTTCTTGGGCACCACCTTGGCACTGGGGCAGGGACAAGGTAAG
GAGGCAACGCCCCCACTGCCTGCAGAGGAACTCTGCTGCAAGCCTTTGACTTGCCAGAAGAGGC
ATTGCCCTGTAGAGTAAATGCCAACTTAGCCGAGCTGTTGCAGCAACAGGCAAGCTGGTAAAAC
AGAGGAGAGAATCCCCACTCTCAGCTTTTGCCTTGACCTTTGATCTTGTGGTCTTTCAGCCTTG
CTTAGGGAGGCTTTTCTGTCTGAGTTATTTCAAGATTACTGGCATACTCCACATCTGATCCAGA
ATCTATGTTTGCTTGGTTATTCTGTCAACTTTTCAGTGTGGTTTCAGACACTGCATGCATGGCT
TAGTGGAGATCAACACTCCTGCTTCCTGCCTCCCAGGAAGAAAAAGCCTTCCTACACTGTCTTA
GACGGGTGGTGCATCTCTCTTCTCCGTACATGTATTAGGACAAGCGTTTCCATCTAATCCCTTC
CTATTTGGCCATTCCAGGCTCCCCCTGGGAAAGTCTCCCCTAGTATTTTCTATGACCCCCAAGG
GATATGCACAGGACTTGCAGAGTCTGTGTTGCAGACTCCTTCTTGTGGAGCTGCTGGCTCAGGT
GGGTCCCTGGAACGAATGTTTCTGTGTCCCCAGAGCCTTCACACTCATGGGTACATCTAGCTTC
CAGGAGCAACATGTATGTTCCTCATGACACCTGACTGATTTGAATCTGTTTCTGGAATTACACC
AAGGTCTAGCCTCATCCAAGTTAAAAACTTCTCCTACCACTGCTATCCACAGCACTGCCTGTGG
TTCCAACTCAGGGTTGCCTGAAGCCTAACAGACCTCACTTCCCAGCAATTCCCCTTATCCAGGG
AGGTGACTACCCCATGGCCAAGTCCCTCAGCTCCCTTTGTTCAGACGGAGGAACCCCAAGGTGG
GGCCTGTAGGTTGAGGTTTCAATTAGGAGGAAGGCTTTGCTGTATGAACAACTTAGAGTGATTC
TGTAAGGCCCACAAATACTGTTTCCCAAGCTCAGGTCTCAGCATGACAGGCTACCCATGCATGA
CTGGGGTGGGCTGGGGCCTCAGAGACCAGCTGGGAGGTGCAGCTGAGGTTAGGGAGGGGATCGT
TACTGTACTGTTTCTGAGACGGAAGTTCTAAAATCCCCTAACACACTGAGGGAAGAAAACAGAA
GGCTCTTTATGGGCAAGAGTGGGGATCCATGCTCACAGCTGGCCTGTCAGAACCCCCACCTCAT
CCTGACACATTCCTGCCTTTCAATAGGTCATGGTCAGAGCAGTCAAGCCCATCCAGAAAGAGTT
CATTCTGAATGGGTTATTGTGTCTACCCCAGGCACCCCCTAGTCTTTGCCTATCTCTTTGTGCC
CCAGCACATGGTGAGGAGACTAGAAGAGGTCTCTGTCCCCATTTTCCAAAAATATCTGTCTGCA
GCACAGAGTCCGGAAGCTTCCTGGGAGGTCAGCACAGGCCCTACGGTCCTCCTCCTCCCCATTG
ACCATGGCTTCCCCCTCCTTCATGACAGGATTACCCTGTCTTTGCTTCTTTTCCTTTTGCTGTG
GCAAAATGCTAACAAAAGCAACTTATGGGGTAAAGGTTTATTTTAGTTCATCATGGCAGGGAAG
CCAAGGTGCAGCCAGTCACACTGCATCTACCATCAGAAAGCAAAAAAGGAGTGAATGCTAGTGC
TCAACCCATTACCTCAGTTTCTTATAGCTCCTGCCAAGGGAATAGCCCCATCTGCAATTAAAAC
GTGTGTCTCCACATTGTTAATGTCAATTAACGAAATCAAGCTGCTTCCCTCTCTCTAATCCCCC
CACAGGAATCCTTGGAGTCTGATATCCCAGGTGACTTTAATTCTCTAAAGCTGACGGTACTAGA
CATCACACTGCCATTCCTAGTTTGGGAGCTGAAGCTTGGTACACATCCCACACATGTCTACATG
TAGGCACACCATGTGCACATAAGCAGACAGCCATCACCATAGTTCCAGCTGAGGTCCTACATCC
AATCTGCTCACAAGGGATACATCCACCTAGCATATGCATGCGTGCGTGCGTGCATGTGCCTGCA
CACACACACACAGCTGCTTCTATATCCCTCGAGAGTGGGAGACCCAAGGCAGCTGCCAAGGCCC
TGGGCTTTATCTCTGCATCTCCAGTCATCATAAGGCGTACACACACACACCGCCTTCCCCTGGG
TGCTGGTGTGATCCTCCTTTGCAGTGGTGGAATTAGACCCCCTCCTCCTGAATCTACCAGTGTG
GCCTTGTCATCAAAGATCACAAGGATGTGGGAGCTTCATGAGGCCACAAACTCTATAAAGACAC
CTAGGTGGGGCCGTATCCCTCCATGCCTCTTAGGGAAAACCTCCTTCTGGAGGTGGTCAGTTGG
TCACTGGTAAGTCTGCTTCACACCCCAACTTCCAATCCTGTTGTTACAGTAAGTAGCCGTCTGA
GGCTGGCAGTACTGCCCGAGGATCGACTGCAGATGAAGTGGAGGGAAGCAGAGGGAAGTGGCCT
TGGCTATTTGGTGCAAGTGACACCTATGGCAGGGGACTTGGAGCAGGAGCTGGTACTGACCACC
AAGACCCCCAAAGCCACTGTGGGTGGCCTGAGCCCTTCCAAGAGCTACACCTTACAGATCTTCG
AGCTCACTGACTCTGGGCCTGTCCTGCTAGCACGAAGGGAGTTTGTAATTGAGGATCTAAAGAG
CCAATCTTTGGGCAGAGGAAGCCGGAGGCTGGCAGGAGCCACCCTGGAGCCTCCCTCCTTCCCT
CTGAGGGACCCAGACTCTGAGAAAACATCTGAGCCCAGCATTGCCTTCACCTCAAGCAGGGACC
TTCCCATTCTCGGAGTGGCCAGTAAGGATCAGAGGAAACTCAAGCAGGGCCTTGGAGTACAAGA
CTCTGCCCAGCCAACCCCAGACCTGGAGAGGCAGAGCCACACCGCAGTCTCTGTGGGAAAGCGA
GGGAAGCTAGATGACCCCCAGTTCCAGTGCACACCCCCAACACCTGCTGACATAATCTTCCTGG
TGGATGGGTCCTGGAGCATCGGCCACAACAACTTTCAGCAGGTGAAAGACTTCCTGGCTAGCAT
CATCACACACTTTGCAATAGGACCAGATAAAGTCCAAGTAGGTCTGACTCAGTACAGTGGAGAC
CCCCAGACCGAGTGGGACCTGAACTCCTTCCACACCAAGGAGCAAGTGCTAGCAGCAGTACACC
ACCTCCACTACAAAGGAGGAAACACGTTCACAGGCCTTGCCCTAACCCATGTGCTGGGGCAGAA
CCTGAAGCCAGCAGCAGGTGTCCGTCCAGAGGCAGCCAAAGTGTTGATTCTGGTGACAGACGGC
AAGTCTCAGGATGATGTGCGCACAGCTGCCAGAGTCCTTAAGGACCAGGACATTGATGTCTTCA
CTGTGGGTGTGAAGAATGTCGACGAGGCCGAGCTGAAGCTCCTGGCATCCCAGCCGCTGGACAT
CACTGTCCACAACGTGCTGGACTTCCCTCAGCTGACCACCTTAGCCCCTCTGCTCAGCCGTCTT
ATTTGCCAAAAAATTCAGGGCAGAGGCCCAGTCAAACCAGCGGCGGGTACTCGGATCCTGGACC
CTCTCCCCACGCCCACCAGACTGACCCTGACCCACGTCACCTCATCCAGTATCCACCTGTCTTG
GACTCCGGCCTTATACCCACCCCTCAAGTATCTAATTGTATGGCAGCCTTCTAGGGGTGGTGCC
CCCAAGGAGGTGGTGGTGGAGGGGCCTGTCTCATCCATGGAGCTTGGAAACCTGACCTCCAACA
CAGAATACTCGGTCTCTGTGCTTCCTGTCTACGAGAGTGGGGTTGGCAAGAGTCTGCAAGGACG
GGCAACCACAGCACCCCTGCCTCCACCTGGGCCACTGACCCTAGCTGCGGTGACACCCAGAACT
CTCCACCTTACCTGGCAGCCCTCTGCTGGGGCCACTCAATACTTGGTACAGTACTTGCTGGCTG
CCTCCACTGGGGAGGAACAAAAGAGAGAGGTACATGTAGGACGGCCTGAGGTAGTGCTGGACGA
TCTGGAGCCTGGCCAGGACTATGAGGTTTCAGTGCAGAGCCTTCGTGGACCAGAGGCCAGTGAG
GCCCGGAACATCCATGCCAGGACCCCTGTCCCGGGGCCCCCAAGACACCTGAGTTTCTCAGATG
TGCGCTACAACTCAACCTGTGTGTCCTGGGAAGCCCAGAGGCCTGTGCGCCTGGTCAAGGTCAG
CTACGTCTCTAGCGATGGCAGCCACTCTGGGCAGATTCAGGTTCCTGGGAACGTTACCTCAGCT
ACTCTGGGCCCACTTTCTTCCTCTACCGTGTACACCATCCGAGTCACCTGTTTTTACCTCAGGG
GTGGTTCCTCCGTGCTGACTGGCCATGTGACCACACAGAAAGCGCCTAGCCCTAGCCAGTTGTC
GGTGACGGAGCTCCCGGGAGATACAGTAAAGCTGTCATGGTTGGCCACTGCCTTGTCTGGTGTA
CTTGTTTATCAGATCAAGTGGATGCCCTTGGGAGAGGGGAAGGCCCATGAGATCTCTGTCCCAG
GGACCCTTGGCACAGCCATCTTGCCTGGTCTGATGAAGCATGTGGAATATGAGATCACCATCCT
TGCCTACTATAGGGACGGCACTCGCAGCGACCCCGTGTCCCTCCGCTACACCCCCTCTGCAGCA
AACAGGAGCCCCCCATCCAGCCTGGCCTTGTCCTCGGAGACCCCCAACAGCCTGCAGGTCAGCT
GGGCACCACCAAGTGGCCATGTCCTCCATTACCGGCTCAACTACACACTGGCCTCAGGCTCTGG
ACCAGAGAAATCGATCTCTGTACCAGGCACCAGGAGCCATGTTGTACTTCGTGATCTGATGTCT
GCCGCCAAGTACAGGGTCCTGGTCTCAGCTGTCTATGGAGCAGGGGAGAGCATGGCAGTGTCTG
CCACATACCGCACAGCCTGCCCAGCCCTGCACCCGGACAGTTCCCTCTCAGGGTATGACCTGAT
GATGGCCTTTGGCCTTGTGGCAAAGGAGTATGCCTCTATTCGAGGGGTGGCTATGGAGCCCTCA
GCCTTCGGTGTGGCCCCAACCTTCACTCTCTTCAAGGATGCTCAACTGATGCGGCGGGTCAGTG
ACGTCCACCCAGCAACCCTGCCACCAGAACACACCATTGTCTTCCTTGTGCGTCTACTTCCTGA
AACACCCCGGGAAGCCTTTGCACTGTGGCAGATGATGGCTGAAGACTTCCAGCCTATCCTCGGG
GTTCTTCTGGATGCTGGCAGAAAGTCTCTGACTTACTTCAACCATGATTCCAGAGCAGCCTTGC
AGGAGATCACCTTTGACCTGCAGGATGCAAAGAAGATTTTCTTTGGAAGCTTCCACAAGGTACA
TATAGCTGTAGGCCACTCTAAGATCAGACTTTACGTGGACTGTCGGAAGGTGGCTGAGCGGCCC
ATTGGGGATGCTGGCAGCCCACCCACAGCTGGTTTCATCACACTAGGGAGGCTAGCCAAGGCCA
GAGGGCCACGGAGCAGCTCAGCCACATTCCAGCTCCAGATGTTGCAGATCATGTGCAGCGATAC
GTGGGCGGACAAGGACAGGTGCTGCGAGCTTCCTGCATTGAGGGATGGAGAGACATGCCCGGCC
TTCCCTTTAGCCTGTACCTACTCATCTGAGACCCCTGGGCCACCAGGGCCCCAAGGCCCTCCAG
GCCTCCCTGGAAGGAATGGCACTCCAGGACAGCAGGGACACCCAGGACCCAAGGGAGAGCCTGG
CCCACCTGGACAAACAGGACCCGAAGGCCCTGGAGGTCAGCAGGGGTCACCAGGGACCCAGGGC
CGTGCAGTCCAGGGACCCATGGGGCCACCAGGAGCCAAAGGAGAGAAGGGGGATCACGGCCTCC
CGGGCTTGCAGGGCCTCTCTGGCCAGCAAGGCATCCCTGGGAAAACTGGCCTACAAGGACCAAA
GGGAATGAGAGGACTGGAGGGACCTGCTGGGCTGCCTGGACCACCTGGCCCCAGGGGATTCCAG
GGCTTGGCAGGGGCCAGCGGTACCAGTGGAGAGCAAGGGCCCCCAGGAGCTGTGGGTCCCACAG
GTCTACCAGGGTCCAAAGGTGAACGAGGAGAGAAGGGAGAGCCACAGTCCCTTGCCACCATCTT
CCAGCTGGTGAGCCAGGCCTGCGAGTCAGCCATACGGACACACGTGATGAAGCTGAATTCCTTC
CTTCATGAGAATGCCCGTCCCCCGATGCCCTTCATGGCAGAGACAGCCAAGCTAAGCAGACCCA
GAGCTATAGATCCTGGATTACACAACAAGGCTCTACTTCCTGGAGACTGGGGACATATCCTCCA
CCATGAGGATGAAGGTATCAGGCTTCCTGCTCTTGGAAGGGATTCTAGAGGTAGACAGTGGCTG
GTTCCCTGCACACACATGGGTGTTCGTGTGTGCATGTGCGTGCGTGTGCGTGTGTGCATTTGTG
TGTATGTGTTTCCTCCTCATCAGCCTCTTTTACCCCAAAGATGTCTTAATGGGCACCTCATTTA
GACGTTGCAGAGTCTACTCTGGCTGCTGAACCCACACTAATGGGGCTCAGTTCCTGATGGTCCT
GGTACCATAGGCGCTTAGCCTTCAGCCAAGGGTCGAGCCTCACACTCATCCCAAGAGAACCCAG
CCTCCCTCTGACAGACAGATCAGAGAAGCTGAAGCTGCTACGTCCCCAGTCCTTGTTTGTCCCC
CTTTCT

hide sequence

RefSeq Acc Id:

XM_017592316 ⟹ XP_017447805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,477,663 - 188,512,326 (+)	NCBI
mRatBN7.2	3	168,102,475 - 168,134,759 (+)	NCBI
Rnor_6.0	3	176,493,709 - 176,526,009 (+)	NCBI

Sequence:

show sequence

AAAAAAAAAAAAAAGAAAAAAGCTCCTCATGTCATGGTGACCCTCAATCATGAAGTTATTTTTG
TTACTATAACTATCACATCTATACTTTTGATCACAACTATAATTTTGATACTATTATGAGTCAT
AATGTAAATATCTGTTTTCCAATAATCGTTGATAATTCCTGTGAAAGGGTCATTAGATGCCCCC
CAACACACACATACACACACACACACAAAGGGGTCACAACTCACAGGTTAACTGCTATTCTTGG
GTGTATTACCCTGCAGCCTTCCTACTGGTCTGGGCTCTGCTCACAGAGCTGGCTTCCCTGCAGA
GGGTAACCTTGAGTATATAGGAAATGCAGGTGCTTTGTTCAGTGGGGTGGGGATCTGGGATCCT
CAGGATTCTTCTCAGGCTCACAAATTTCAGGCTGGGTCATGCTTGTGTCCCCTTCTCCAAAATG
CCACCCCTAGGTGGTGGACTCCCTACCCCATTGACCTCTCAAGTGTTATCTCCCAACTTCTGAG
AGGTCTCAAGGGTTCCCCAGTACTTTTCATACCTACTGCGCCTGCTTCTGCTCTAACCAGAAAT
TGGTCTCACGTGCTTGAGGGCAAGTCACTCAATGTGATGACCTTGATGGTAGGAATCTATCTAA
ACCAATCCTAGACACCATGTGGGGCTGCTGGGTCCTCAAGGTCTTGTTACTCTGGTGATTCCTG
CTGTGACTATGGGTTGTGGCTGTGAACACTGGAAGGGGCATGGGCAGATGTGTTGGACTGGACC
CTTTCAGGGAGAATTGGCTCCCTGCAGAAGGAACATGGAGTTCACAAGGAGGTTGTGCAGCTAA
GGGTCCATTGTTCAGCGGGACGCCTCAGCATGGCTTCAGTGCTGGTCTTCGATCCTCAGTCTTC
ATCGACATCTCCATAATGACAAGCCACAGGCCTCTGGGCATCACACATGTCTGTAGGGACATCC
TGCTGGTCCATAGGAGTGGACGGAGAACTAGCTTTCTGGTCAGGGCAAGGGCAGATGGTTCCTT
AAGTGCTGAAGGGCCTTGACCTCTCCTCCCACAGGCTGCTCAGTATGAGCCTCCAAGGCTCCTA
CCTCCGCTTCTGCCTCTGGATGTTCTTGGGCACCACCTTGGCACTGGGGCAGGGACAAGGTAAG
GAGGCAACGCCCCCACTGCCTGCAGAGGAACTCTGCTGCAAGCCTTTGACTTGCCAGAAGAGGC
ATTGCCCTGTAGAGTAAATGCCAACTTAGCCGAGCTGTTGCAGCAACAGGCAAGCTGGTAAAAC
AGAGGAGAGAATCCCCACTCTCAGCTTTTGCCTTGACCTTTGATCTTGTGGTCTTTCAGCCTTG
CTTAGGGAGGCTTTTCTGTCTGAGTTATTTCAAGATTACTGGCATACTCCACATCTGATCCAGA
ATCTATGTTTGCTTGGTTATTCTGTCAACTTTTCAGTGTGGTTTCAGACACTGCATGCATGGCT
TAGTGGAGATCAACACTCCTGCTTCCTGCCTCCCAGGAAGAAAAAGCCTTCCTACACTGTCTTA
GACGGGTGGTGCATCTCTCTTCTCCGTACATGTATTAGGACAAGCGTTTCCATCTAATCCCTTC
CTATTTGGCCATTCCAGGCTCCCCCTGGGAAAGTCTCCCCTAGTATTTTCTATGACCCCCAAGG
GATATGCACAGGACTTGCAGAGTCTGTGTTGCAGACTCCTTCTTGTGGAGCTGCTGGCTCAGGT
GGGTCCCTGGAACGAATGTTTCTGTGTCCCCAGAGCCTTCACACTCATGGGTACATCTAGCTTC
CAGGAGCAACATGTATGTTCCTCATGACACCTGACTGATTTGAATCTGTTTCTGGAATTACACC
AAGGTCTAGCCTCATCCAAGTTAAAAACTTCTCCTACCACTGCTATCCACAGCACTGCCTGTGG
TTCCAACTCAGGGTTGCCTGAAGCCTAACAGACCTCACTTCCCAGCAATTCCCCTTATCCAGGG
AGGTGACTACCCCATGGCCAAGTCCCTCAGCTCCCTTTGTTCAGACGGAGGAACCCCAAGGTGG
GGCCTGTAGGTTGAGGTTTCAATTAGGAGGAAGGCTTTGCTGTATGAACAACTTAGAGTGATTC
TGTAAGGCCCACAAATACTGTTTCCCAAGCTCAGGTCTCAGCATGACAGGCTACCCATGCATGA
CTGGGGTGGGCTGGGGCCTCAGAGACCAGCTGGGAGGTGCAGCTGAGGTTAGGGAGGGGATCGT
TACTGTACTGTTTCTGAGACGGAAGTTCTAAAATCCCCTAACACACTGAGGGAAGAAAACAGAA
GGCTCTTTATGGGCAAGAGTGGGGATCCATGCTCACAGCTGGCCTGTCAGAACCCCCACCTCAT
CCTGACACATTCCTGCCTTTCAATAGGTCATGGTCAGAGCAGTCAAGCCCATCCAGAAAGAGTT
CATTCTGAATGGGTTATTGTGTCTACCCCAGGCACCCCCTAGTCTTTGCCTATCTCTTTGTGCC
CCAGCACATGGTGAGGAGACTAGAAGAGGTCTCTGTCCCCATTTTCCAAAAATATCTGTCTGCA
GCACAGAGTCCGGAAGCTTCCTGGGAGGTCAGCACAGGCCCTACGGTCCTCCTCCTCCCCATTG
ACCATGGCTTCCCCCTCCTTCATGACAGGATTACCCTGTCTTTGCTTCTTTTCCTTTTGCTGTG
GCAAAATGCTAACAAAAGCAACTTATGGGGTAAAGGTTTATTTTAGTTCATCATGGCAGGGAAG
CCAAGGTGCAGCCAGTCACACTGCATCTACCATCAGAAAGCAAAAAAGGAGTGAATGCTAGTGC
TCAACCCATTACCTCAGTTTCTTATAGCTCCTGCCAAGGGAATAGCCCCATCTGCAATTAAAAC
GTGTGTCTCCACATTGTTAATGTCAATTAACGAAATCAAGCTGCTTCCCTCTCTCTAATCCCCC
CACAGGAATCCTTGGAGTCTGATATCCCAGGTGACTTTAATTCTCTAAAGCTGACGGTACTAGA
CATCACACTGCCATTCCTAGTTTGGGAGCTGAAGCTTGGTACACATCCCACACATGTCTACATG
TAGGCACACCATGTGCACATAAGCAGACAGCCATCACCATAGTTCCAGCTGAGGTCCTACATCC
AATCTGCTCACAAGGGATACATCCACCTAGCATATGCATGCGTGCGTGCGTGCATGTGCCTGCA
CACACACACACAGCTGCTTCTATATCCCTCGAGAGTGGGAGACCCAAGGCAGCTGCCAAGGCCC
TGGGCTTTATCTCTGCATCTCCAGTCATCATAAGGCGTACACACACACACCGCCTTCCCCTGGG
TGCTGGTGTGATCCTCCTTTGCAGTGGTGGAATTAGACCCCCTCCTCCTGAATCTACCAGTGTG
GCCTTGTCATCAAAGATCACAAGGATGTGGGAGCTTCATGAGGCCACAAACTCTATAAAGACAC
CTAGGTGGGGCCGTATCCCTCCATGCCTCTTAGGGAAAACCTCCTTCTGGAGGTGGTCAGTTGG
TCACTGGTAAGTCTGCTTCACACCCCAACTTCCAATCCTGTTGTTACAGTAAGTAGCCGTCTGA
GGCTGGCAGTACTGCCCGAGGATCGACTGCAGATGAAGTGGAGGGAAGCAGAGGGAAGTGGCCT
TGGCTATTTGGTGCAAGTGACACCTATGGCAGGGGACTTGGAGCAGGAGCTGGTACTGACCACC
AAGACCCCCAAAGCCACTGTGGGTGGCCTGAGCCCTTCCAAGAGCTACACCTTACAGATCTTCG
AGCTCACTGACTCTGGGCCTGTCCTGCTAGCACGAAGGGAGTTTGTAATTGAGGATCTAAAGAG
CCAATCTTTGGGCAGAGGAAGCCGGAGGCTGGCAGGAGCCACCCTGGAGCCTCCCTCCTTCCCT
CTGAGGGACCCAGACTCTGAGAAAACATCTGAGCCCAGCATTGCCTTCACCTCAAGCAGGGACC
TTCCCATTCTCGGAGTGGCCAGTAAGGATCAGAGGAAACTCAAGCAGGGCCTTGGAGTACAAGA
CTCTGCCCAGCCAACCCCAGACCTGGAGAGGCAGAGCCACACCGCAGTCTCTGTGGGAAAGCGA
GGGAAGCTAGATGACCCCCAGTTCCAGTGCACACCCCCAACACCTGCTGACATAATCTTCCTGG
TGGATGGGTCCTGGAGCATCGGCCACAACAACTTTCAGCAGGTGAAAGACTTCCTGGCTAGCAT
CATCACACACTTTGCAATAGGACCAGATAAAGTCCAAGTAGGTCTGACTCAGTACAGTGGAGAC
CCCCAGACCGAGTGGGACCTGAACTCCTTCCACACCAAGGAGCAAGTGCTAGCAGCAGTACACC
ACCTCCACTACAAAGGAGGAAACACGTTCACAGGCCTTGCCCTAACCCATGTGCTGGGGCAGAA
CCTGAAGCCAGCAGCAGGTGTCCGTCCAGAGGCAGCCAAAGTGTTGATTCTGGTGACAGACGGC
AAGTCTCAGGATGATGTGCGCACAGCTGCCAGAGTCCTTAAGGACCAGGACATTGATGTCTTCA
CTGTGGGTGTGAAGAATGTCGACGAGGCCGAGCTGAAGCTCCTGGCATCCCAGCCGCTGGACAT
CACTGTCCACAACGTGCTGGACTTCCCTCAGCTGACCACCTTAGCCCCTCTGCTCAGCCGTCTT
ATTTGCCAAAAAATTCAGGGCAGAGGCCCAGTCAAACCAGCGGCGGGTACTCGGATCCTGGACC
CTCTCCCCACGCCCACCAGACTGACCCTGACCCACGTCACCTCATCCAGTATCCACCTGTCTTG
GACTCCGGCCTTATACCCACCCCTCAAGTATCTAATTGTATGGCAGCCTTCTAGGGGTGGTGCC
CCCAAGGAGGTGGTGGTGGAGGGGCCTGTCTCATCCATGGAGCTTGGAAACCTGACCTCCAACA
CAGAATACTCGGTCTCTGTGCTTCCTGTCTACGAGAGTGGGGTTGGCAAGAGTCTGCAAGGACG
GGCAACCACAGCACCCCTGCCTCCACCTGGGCCACTGACCCTAGCTGCGGTGACACCCAGAACT
CTCCACCTTACCTGGCAGCCCTCTGCTGGGGCCACTCAATACTTGGTACAGTACTTGCTGGCTG
CCTCCACTGGGGAGGAACAAAAGAGAGAGGTACATGTAGGACGGCCTGAGGTAGTGCTGGACGA
TCTGGAGCCTGGCCAGGACTATGAGGTTTCAGTGCAGAGCCTTCGTGGACCAGAGGCCAGTGAG
GCCCGGAACATCCATGCCAGGACCCCTGTCCCGGGGCCCCCAAGACACCTGAGTTTCTCAGATG
TGCGCTACAACTCAACCTGTGTGTCCTGGGAAGCCCAGAGGCCTGTGCGCCTGGTCAAGGTCAG
CTACGTCTCTAGCGATGGCAGCCACTCTGGGCAGATTCAGGTTCCTGGGAACGTTACCTCAGCT
ACTCTGGGCCCACTTTCTTCCTCTACCGTGTACACCATCCGAGTCACCTGTTTTTACCTCAGGG
GTGGTTCCTCCGTGCTGACTGGCCATGTGACCACACAGAAAGCGCCTAGCCCTAGCCAGTTGTC
GGTGACGGAGCTCCCGGGAGATACAGTAAAGCTGTCATGGTTGGCCACTGCCTTGTCTGGTGTA
CTTGTTTATCAGATCAAGTGGATGCCCTTGGGAGAGGGGAAGGCCCATGAGATCTCTGTCCCAG
GGACCCTTGGCACAGCCATCTTGCCTGGTCTGATGAAGCATGTGGAATATGAGATCACCATCCT
TGCCTACTATAGGGACGGCACTCGCAGCGACCCCGTGTCCCTCCGCTACACCCCCTCTGCAGCA
AACAGGAGCCCCCCATCCAGCCTGGCCTTGTCCTCGGAGACCCCCAACAGCCTGCAGGTCAGCT
GGGCACCACCAAGTGGCCATGTCCTCCATTACCGGCTCAACTACACACTGGCCTCAGGCTCTGG
ACCAGAGAAATCGATCTCTGTACCAGGCACCAGGAGCCATGTTGTACTTCGTGATCTGATGTCT
GCCGCCAAGTACAGGGTCCTGGTCTCAGCTGTCTATGGAGCAGGGGAGAGCATGGCAGTGTCTG
CCACATACCGCACAGCAGCCTGCCCAGCCCTGCACCCGGACAGTTCCCTCTCAGGGTATGACCT
GATGATGGCCTTTGGCCTTGTGGCAAAGGAGTATGCCTCTATTCGAGGGGTGGCTATGGAGCCC
TCAGCCTTCGGTGTGGCCCCAACCTTCACTCTCTTCAAGGATGCTCAACTGATGCGGCGGGTCA
GTGACGTCCACCCAGCAACCCTGCCACCAGAACACACCATTGTCTTCCTTGTGCGTCTACTTCC
TGAAACACCCCGGGAAGCCTTTGCACTGTGGCAGATGATGGCTGAAGACTTCCAGCCTATCCTC
GGGGTTCTTCTGGATGCTGGCAGAAAGTCTCTGACTTACTTCAACCATGATTCCAGAGCAGCCT
TGCAGGAGATCACCTTTGACCTGCAGGATGCAAAGAAGATTTTCTTTGGAAGCTTCCACAAGGT
ACATATAGCTGTAGGCCACTCTAAGATCAGACTTTACGTGGACTGTCGGAAGGTGGCTGAGCGG
CCCATTGGGGATGCTGGCAGCCCACCCACAGCTGGTTTCATCACACTAGGGAGGCTAGCCAAGG
CCAGAGGGCCACGGAGCAGCTCAGCCACATTCCAGCTCCAGATGTTGCAGATCATGTGCAGCGA
TACGTGGGCGGACAAGGACAGGTGCTGCGAGCTTCCTGCATTGAGGGATGGAGAGACATGCCCG
GCCTTCCCTTTAGCCTGTACCTACTCATCTGAGACCCCTGGGCCACCAGGGCCCCAAGGCCCTC
CAGGCCTCCCTGGAAGGAATGGCACTCCAGGACAGCAGGGACACCCAGGACCCAAGGGAGAGCC
TGGCCCACCTGGACAAACAGGACCCGAAGGCCCTGGAGGTCAGCAGGGGTCACCAGGGACCCAG
GGCCGTGCAGTCCAGGGACCCATGGGGCCACCAGGAGCCAAAGGAGAGAAGGGGGATCACGGCC
TCCCGGGCTTGCAGGGCCTCTCTGGCCAGCAAGGCATCCCTGGGAAAACTGGCCTACAAGGACC
AAAGGGAATGAGAGGACTGGAGGGACCTGCTGGGCTGCCTGGACCACCTGGCCCCAGGGGATTC
CAGGGCTTGGCAGGGGCCAGCGGTACCAGTGGAGAGCAAGGGCCCCCAGGAGCTGTGGGTCCCA
CAGGTCTACCAGGGTCCAAAGGTGAACGAGGAGAGAAGGGAGAGCCACAGTCCCTTGCCACCAT
CTTCCAGCTGGTGAGCCAGGCCTGCGAGTCAGCCATACGGACACACGTGATGAAGCTGAATTCC
TTCCTTCATGAGAATGCCCGTCCCCCGATGCCCTTCATGGCAGAGACAGCCAAGCTAAGCAGAC
CCAGAGCTATAGATCCTGGATTACACAACAAGGCTCTACTTCCTGGAGACTGGGGACATATCCT
CCACCATGAGGATGAAGGTGAGCCTGTGGCTATCAGCCACACAAGCAAACCTGTACTGCAGGAG
GTGCAGACCCCAGAGCCCCTGGAGTGAACAGGACCTTCCCTCTGCCACTTCAACTCGCCCCGTC
CTTCCCCAGCACCATCATCCATAATTTTGTCTCAACACTGAGAGCAACTGTGCTCTGCAGGGGC
AGAGAAGGAAACCCAAAGGAAGACCCTGAAGTGGCAGGAGTCGGAAGGGAGGAGGGTGGGGCTC
CTCCTCAAGCCCCTTCTTTATAGCATTTCCAGGTTCAGATAAACTTGTGCTAGCTCATCA

hide sequence

RefSeq Acc Id:

XM_039106762 ⟹ XP_038962690

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,477,663 - 188,512,326 (+)	NCBI
mRatBN7.2	3	168,102,475 - 168,134,759 (+)	NCBI

RefSeq Acc Id:

XM_039106763 ⟹ XP_038962691

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,477,663 - 188,512,326 (+)	NCBI
mRatBN7.2	3	168,102,475 - 168,134,759 (+)	NCBI

RefSeq Acc Id:

XM_039106764 ⟹ XP_038962692

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,477,663 - 188,512,326 (+)	NCBI
mRatBN7.2	3	168,102,475 - 168,134,759 (+)	NCBI

RefSeq Acc Id:

XM_039106765 ⟹ XP_038962693

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,477,663 - 188,510,592 (+)	NCBI
mRatBN7.2	3	168,102,475 - 168,133,047 (+)	NCBI

RefSeq Acc Id:

XM_063283895 ⟹ XP_063139965

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,477,663 - 188,512,326 (+)	NCBI

RefSeq Acc Id:

XR_010064639

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,477,663 - 188,510,522 (+)	NCBI

RefSeq Acc Id:

XR_010064640

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,477,663 - 188,510,520 (+)	NCBI

RefSeq Acc Id:

XR_010064641

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	188,477,663 - 188,497,662 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001414633	(Get FASTA)	NCBI Sequence Viewer
	XP_008760825	(Get FASTA)	NCBI Sequence Viewer
	XP_017447804	(Get FASTA)	NCBI Sequence Viewer
	XP_017447805	(Get FASTA)	NCBI Sequence Viewer
	XP_038962690	(Get FASTA)	NCBI Sequence Viewer
	XP_038962691	(Get FASTA)	NCBI Sequence Viewer
	XP_038962692	(Get FASTA)	NCBI Sequence Viewer
	XP_038962693	(Get FASTA)	NCBI Sequence Viewer
	XP_063139965	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL88771	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000049790
	ENSRNOP00000049790.5
	ENSRNOP00000109161.1
	ENSRNOP00000110695
	ENSRNOP00000110695.1
	ENSRNOP00000111758.1

RefSeq Acc Id:	XP_008760825 ⟸ XM_008762603
- Peptide Label:	isoform X8
- UniProtKB:	A6KM63 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSLQGSYLRFCLWMFLGTTLALGQGQVSSRLRLAVLPEDRLQMKWREAEGSGLGYLVQVTPMAG DLEQELVLTTKTPKATVGGLSPSKSYTLQIFELTDSGPVLLARREFVIEDLKSQSLGRGSRRLA GATLEPPSFPLRDPDSEKTSEPSIAFTSSRDLPILGVASKDQRKLKQGLGVQDSAQPTPDLERQ SHTAVSVGKRGKLDDPQFQCTPPTPADIIFLVDGSWSIGHNNFQQVKDFLASIITHFAIGPDKV QVGLTQYSGDPQTEWDLNSFHTKEQVLAAVHHLHYKGGNTFTGLALTHVLGQNLKPAAGVRPEA AKVLILVTDGKSQDDVRTAARVLKDQDIDVFTVGVKNVDEAELKLLASQPLDITVHNVLDFPQL TTLAPLLSRLICQKIQGRGPVKPAAGTRILDPLPTPTRLTLTHVTSSSIHLSWTPALYPPLKYL IVWQPSRGGAPKEVVVEGPVSSMELGNLTSNTEYSVSVLPVYESGVGKSLQGRATTAPLPPPGP LTLAAVTPRTLHLTWQPSAGATQYLVQYLLAASTGEEQKREVHVGRPEVVLDDLEPGQDYEVSV QSLRGPEASEARNIHARTPVPGPPRHLSFSDVRYNSTCVSWEAQRPVRLVKVSYVSSDGSHSGQ IQVPGNVTSATLGPLSSSTVYTIRVTCFYLRGGSSVLTGHVTTQKAPSPSQLSVTELPGDTVKL SWLATALSGVLVYQIKWMPLGEGKAHEISVPGTLGTAILPGLMKHVEYEITILAYYRDGTRSDP VSLRYTPSAANRSPPSSLALSSETPNSLQVSWAPPSGHVLHYRLNYTLASGSGPEKSISVPGTR SHVVLRDLMSAAKYRVLVSAVYGAGESMAVSATYRTAACPALHPDSSLSGYDLMMAFGLVAKEY ASIRGVAMEPSAFGVAPTFTLFKDAQLMRRVSDVHPATLPPEHTIVFLVRLLPETPREAFALWQ MMAEDFQPILGVLLDAGRKSLTYFNHDSRAALQEITFDLQDAKKIFFGSFHKVHIAVGHSKIRL YVDCRKVAERPIGDAGSPPTAGFITLGRLAKARGPRSSSATFQLQMLQIMCSDTWADKDRCCEL PALRDGETCPAFPLACTYSSETPGPPGPQGPPGLPGRNGTPGQQGHPGPKGEPGPPGQTGPEGP GGQQGSPGTQGRAVQGPMGPPGAKGEKGDHGLPGLQGLSGQQGIPGKTGLQGPKGMRGLEGPAG LPGPPGPRGFQGLAGASGTSGEQGPPGAVGPTGLPGSKGERGEKGEPQSLATIFQLVSQACESA IRTHVMKLNSFLHENARPPMPFMAETAKLSRPRAIDPGLHNKALLPGDWGHILHHEDEGEPVAI SHTSKPVLQEVQTPEPLE hide sequence

RefSeq Acc Id:	XP_017447805 ⟸ XM_017592316
- Peptide Label:	isoform X2
- UniProtKB:	A6KM63 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPLRENLLLEVVSWSLVSLLHTPTSNPVVTVSSRLRLAVLPEDRLQMKWREAEGSGLGYLVQVT PMAGDLEQELVLTTKTPKATVGGLSPSKSYTLQIFELTDSGPVLLARREFVIEDLKSQSLGRGS RRLAGATLEPPSFPLRDPDSEKTSEPSIAFTSSRDLPILGVASKDQRKLKQGLGVQDSAQPTPD LERQSHTAVSVGKRGKLDDPQFQCTPPTPADIIFLVDGSWSIGHNNFQQVKDFLASIITHFAIG PDKVQVGLTQYSGDPQTEWDLNSFHTKEQVLAAVHHLHYKGGNTFTGLALTHVLGQNLKPAAGV RPEAAKVLILVTDGKSQDDVRTAARVLKDQDIDVFTVGVKNVDEAELKLLASQPLDITVHNVLD FPQLTTLAPLLSRLICQKIQGRGPVKPAAGTRILDPLPTPTRLTLTHVTSSSIHLSWTPALYPP LKYLIVWQPSRGGAPKEVVVEGPVSSMELGNLTSNTEYSVSVLPVYESGVGKSLQGRATTAPLP PPGPLTLAAVTPRTLHLTWQPSAGATQYLVQYLLAASTGEEQKREVHVGRPEVVLDDLEPGQDY EVSVQSLRGPEASEARNIHARTPVPGPPRHLSFSDVRYNSTCVSWEAQRPVRLVKVSYVSSDGS HSGQIQVPGNVTSATLGPLSSSTVYTIRVTCFYLRGGSSVLTGHVTTQKAPSPSQLSVTELPGD TVKLSWLATALSGVLVYQIKWMPLGEGKAHEISVPGTLGTAILPGLMKHVEYEITILAYYRDGT RSDPVSLRYTPSAANRSPPSSLALSSETPNSLQVSWAPPSGHVLHYRLNYTLASGSGPEKSISV PGTRSHVVLRDLMSAAKYRVLVSAVYGAGESMAVSATYRTAACPALHPDSSLSGYDLMMAFGLV AKEYASIRGVAMEPSAFGVAPTFTLFKDAQLMRRVSDVHPATLPPEHTIVFLVRLLPETPREAF ALWQMMAEDFQPILGVLLDAGRKSLTYFNHDSRAALQEITFDLQDAKKIFFGSFHKVHIAVGHS KIRLYVDCRKVAERPIGDAGSPPTAGFITLGRLAKARGPRSSSATFQLQMLQIMCSDTWADKDR CCELPALRDGETCPAFPLACTYSSETPGPPGPQGPPGLPGRNGTPGQQGHPGPKGEPGPPGQTG PEGPGGQQGSPGTQGRAVQGPMGPPGAKGEKGDHGLPGLQGLSGQQGIPGKTGLQGPKGMRGLE GPAGLPGPPGPRGFQGLAGASGTSGEQGPPGAVGPTGLPGSKGERGEKGEPQSLATIFQLVSQA CESAIRTHVMKLNSFLHENARPPMPFMAETAKLSRPRAIDPGLHNKALLPGDWGHILHHEDEGE PVAISHTSKPVLQEVQTPEPLE hide sequence

RefSeq Acc Id:	XP_017447804 ⟸ XM_017592315
- Peptide Label:	isoform X4
- UniProtKB:	A6KM63 (UniProtKB/TrEMBL)
- Sequence:	show sequence MPLRENLLLEVVSWSLVSLLHTPTSNPVVTVSSRLRLAVLPEDRLQMKWREAEGSGLGYLVQVT PMAGDLEQELVLTTKTPKATVGGLSPSKSYTLQIFELTDSGPVLLARREFVIEDLKSQSLGRGS RRLAGATLEPPSFPLRDPDSEKTSEPSIAFTSSRDLPILGVASKDQRKLKQGLGVQDSAQPTPD LERQSHTAVSVGKRGKLDDPQFQCTPPTPADIIFLVDGSWSIGHNNFQQVKDFLASIITHFAIG PDKVQVGLTQYSGDPQTEWDLNSFHTKEQVLAAVHHLHYKGGNTFTGLALTHVLGQNLKPAAGV RPEAAKVLILVTDGKSQDDVRTAARVLKDQDIDVFTVGVKNVDEAELKLLASQPLDITVHNVLD FPQLTTLAPLLSRLICQKIQGRGPVKPAAGTRILDPLPTPTRLTLTHVTSSSIHLSWTPALYPP LKYLIVWQPSRGGAPKEVVVEGPVSSMELGNLTSNTEYSVSVLPVYESGVGKSLQGRATTAPLP PPGPLTLAAVTPRTLHLTWQPSAGATQYLVQYLLAASTGEEQKREVHVGRPEVVLDDLEPGQDY EVSVQSLRGPEASEARNIHARTPVPGPPRHLSFSDVRYNSTCVSWEAQRPVRLVKVSYVSSDGS HSGQIQVPGNVTSATLGPLSSSTVYTIRVTCFYLRGGSSVLTGHVTTQKAPSPSQLSVTELPGD TVKLSWLATALSGVLVYQIKWMPLGEGKAHEISVPGTLGTAILPGLMKHVEYEITILAYYRDGT RSDPVSLRYTPSAANRSPPSSLALSSETPNSLQVSWAPPSGHVLHYRLNYTLASGSGPEKSISV PGTRSHVVLRDLMSAAKYRVLVSAVYGAGESMAVSATYRTACPALHPDSSLSGYDLMMAFGLVA KEYASIRGVAMEPSAFGVAPTFTLFKDAQLMRRVSDVHPATLPPEHTIVFLVRLLPETPREAFA LWQMMAEDFQPILGVLLDAGRKSLTYFNHDSRAALQEITFDLQDAKKIFFGSFHKVHIAVGHSK IRLYVDCRKVAERPIGDAGSPPTAGFITLGRLAKARGPRSSSATFQLQMLQIMCSDTWADKDRC CELPALRDGETCPAFPLACTYSSETPGPPGPQGPPGLPGRNGTPGQQGHPGPKGEPGPPGQTGP EGPGGQQGSPGTQGRAVQGPMGPPGAKGEKGDHGLPGLQGLSGQQGIPGKTGLQGPKGMRGLEG PAGLPGPPGPRGFQGLAGASGTSGEQGPPGAVGPTGLPGSKGERGEKGEPQSLATIFQLVSQAC ESAIRTHVMKLNSFLHENARPPMPFMAETAKLSRPRAIDPGLHNKALLPGDWGHILHHEDEGIR LPALGRDSRGRQWLVPCTHMGVRVCMCVRVRVCICVYVFPPHQPLLPQRCLNGHLI hide sequence

Ensembl Acc Id:

ENSRNOP00000049790 ⟸ ENSRNOT00000040270

RefSeq Acc Id:	XP_038962690 ⟸ XM_039106762
- Peptide Label:	isoform X1
- UniProtKB:	A6KM63 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962691 ⟸ XM_039106763
- Peptide Label:	isoform X3
- UniProtKB:	A6KM63 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962692 ⟸ XM_039106764
- Peptide Label:	isoform X5
- UniProtKB:	A6KM63 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038962693 ⟸ XM_039106765
- Peptide Label:	isoform X7
- UniProtKB:	A6KM63 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063139965 ⟸ XM_063283895
- Peptide Label:	isoform X6
- UniProtKB:	A6KM63 (UniProtKB/TrEMBL)

RefSeq Acc Id:	NP_001414633 ⟸ NM_001427704
- Peptide Label:	precursor
- UniProtKB:	D3ZII5 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000013900 ⟸ ENSRNOT00000013900

Ensembl Acc Id:

ENSRNOP00000073451 ⟸ ENSRNOT00000082267

Ensembl Acc Id:

ENSRNOP00000111758 ⟸ ENSRNOT00000144526

Ensembl Acc Id:

ENSRNOP00000051916 ⟸ ENSRNOT00000055038

Ensembl Acc Id:

ENSRNOP00000109161 ⟸ ENSRNOT00000172079

Ensembl Acc Id:

ENSRNOP00000110695 ⟸ ENSRNOT00000163325

Protein Domains

Fibronectin type-III VWFA

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZII5-F1-model_v2	AlphaFold	D3ZII5	1-1362	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563901	AgrOrtholog
BioCyc Gene	G2FUF-46309	BioCyc
Ensembl Genes	ENSRNOG00000010326	Ensembl
	ENSRNOG00000043150	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000040270	ENTREZGENE
	ENSRNOT00000040270.8	UniProtKB/TrEMBL
	ENSRNOT00000144526.1	UniProtKB/TrEMBL
	ENSRNOT00000163325	ENTREZGENE
	ENSRNOT00000163325.1	UniProtKB/TrEMBL
	ENSRNOT00000172079.1	UniProtKB/TrEMBL
Gene3D-CATH	2.60.120.200	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
	3.40.50.410	UniProtKB/TrEMBL
InterPro	Collagen	UniProtKB/TrEMBL
	ConA-like_dom	UniProtKB/TrEMBL
	ECM_Assembly_Org	UniProtKB/TrEMBL
	FN3_sf	UniProtKB/TrEMBL
	FN_III	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	TSPN-like_N	UniProtKB/TrEMBL
	VWF_A	UniProtKB/TrEMBL
	vWFA_dom_sf	UniProtKB/TrEMBL
NCBI Gene	311716	ENTREZGENE
PANTHER	COLLAGEN ALPHA	UniProtKB/TrEMBL
	COLLAGEN ALPHA-1(XX) CHAIN	UniProtKB/TrEMBL
Pfam	Collagen	UniProtKB/TrEMBL
	fn3	UniProtKB/TrEMBL
	VWA	UniProtKB/TrEMBL
PhenoGen	Col20a1	PhenoGen
PRINTS	VWFADOMAIN	UniProtKB/TrEMBL
PROSITE	FN3	UniProtKB/TrEMBL
	VWFA	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000010326	RatGTEx
	ENSRNOG00000043150	RatGTEx
SMART	FN3	UniProtKB/TrEMBL
	TSPN	UniProtKB/TrEMBL
	VWA	UniProtKB/TrEMBL
Superfamily-SCOP	ConA_like_lec_gl	UniProtKB/TrEMBL
	FN_III-like	UniProtKB/TrEMBL
	SSF53300	UniProtKB/TrEMBL
UniProt	A0ABK0LUW5_RAT	UniProtKB/TrEMBL
	A0ABK0LWJ3_RAT	UniProtKB/TrEMBL
	A0ABK0M7G7_RAT	UniProtKB/TrEMBL
	A6KM63	ENTREZGENE, UniProtKB/TrEMBL
	D3ZII5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-06-01	Col20a1	collagen type XX alpha 1 chain	Col20a1	collagen, type XX, alpha 1	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-06	Col20a1	collagen, type XX, alpha 1	RGD1563901_predicted	similar to Protein KIAA1510 precursor (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1563901_predicted	similar to Protein KIAA1510 precursor (predicted)	LOC311716	similar to Protein KIAA1510 precursor	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC311716	similar to Protein KIAA1510 precursor			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar