Wtap (WT1 associated protein) - Rat Genome Database

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Gene: Wtap (WT1 associated protein) Rattus norvegicus
Analyze
Symbol: Wtap
Name: WT1 associated protein
RGD ID: 1563824
Description: Predicted to enable identical protein binding activity. Predicted to be involved in mRNA processing and regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in cytoplasm; nuclear membrane; and nuclear speck. Predicted to be part of RNA N6-methyladenosine methyltransferase complex. Predicted to be active in nucleus. Orthologous to human WTAP (WT1 associated protein); INTERACTS WITH amitrole; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC499020; pre-mRNA-splicing regulator WTAP; RGD1563824; similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog); similar to Wilms tumor 1-associating protein (WT1-associated protein) homolog); Wilms tumor 1 associated protein; Wilms' tumour 1-associating protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8150,070,973 - 50,096,074 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl150,070,769 - 50,096,072 (+)EnsemblGRCr8
mRatBN7.2147,665,965 - 47,691,067 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,665,965 - 47,691,065 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx148,214,813 - 48,239,914 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,202,806 - 54,227,929 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0148,290,329 - 48,315,430 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,942,500 - 47,967,633 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,942,500 - 47,967,631 (+)Ensemblrn6Rnor6.0
Rnor_5.0151,781,701 - 51,806,726 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4141,891,437 - 41,917,254 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera143,351,111 - 43,376,211 (+)NCBICelera
Cytogenetic Map1q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:8889548   PMID:10942595   PMID:11001926   PMID:14681305   PMID:15326124   PMID:24100041   PMID:24316715   PMID:24407421   PMID:24981863   PMID:26458103   PMID:29348140   PMID:29506078  
PMID:29507755   PMID:29547716   PMID:36894806  


Genomics

Comparative Map Data
Wtap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8150,070,973 - 50,096,074 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl150,070,769 - 50,096,072 (+)EnsemblGRCr8
mRatBN7.2147,665,965 - 47,691,067 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,665,965 - 47,691,065 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx148,214,813 - 48,239,914 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,202,806 - 54,227,929 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0148,290,329 - 48,315,430 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,942,500 - 47,967,633 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,942,500 - 47,967,631 (+)Ensemblrn6Rnor6.0
Rnor_5.0151,781,701 - 51,806,726 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4141,891,437 - 41,917,254 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera143,351,111 - 43,376,211 (+)NCBICelera
Cytogenetic Map1q11NCBI
WTAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386159,726,693 - 159,756,319 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6159,716,432 - 159,756,319 (+)Ensemblhg38GRCh38
GRCh376160,148,149 - 160,177,351 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366160,068,142 - 160,097,341 (+)NCBIBuild 36Build 36hg18NCBI36
Celera6160,794,229 - 160,823,430 (+)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6157,617,339 - 157,646,781 (+)NCBIHuRef
CHM1_16160,410,378 - 160,439,680 (+)NCBICHM1_1
T2T-CHM13v2.06160,967,457 - 161,001,943 (+)NCBIT2T-CHM13v2.0
Wtap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391713,185,686 - 13,211,430 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1713,185,683 - 13,213,056 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381712,966,799 - 12,992,543 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1712,966,796 - 12,994,169 (-)Ensemblmm10GRCm38
MGSCv371713,159,665 - 13,185,405 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361712,815,617 - 12,835,478 (-)NCBIMGSCv36mm8
Celera1712,998,333 - 13,025,542 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map178.73NCBI
Wtap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543921,146,206 - 21,182,486 (-)Ensembl
ChiLan1.0NW_00495543921,149,970 - 21,174,479 (-)NCBIChiLan1.0ChiLan1.0
WTAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25179,824,106 - 179,854,540 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16177,729,160 - 177,759,590 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06157,609,779 - 157,639,122 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16162,620,947 - 162,650,683 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6162,621,842 - 162,650,683 (+)EnsemblpanPan2panpan1.1
WTAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1148,976,523 - 49,004,536 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl148,976,499 - 49,003,961 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha149,818,344 - 49,846,503 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0149,160,699 - 49,189,019 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl149,160,693 - 49,189,019 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1149,043,176 - 49,071,381 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0148,914,192 - 48,942,472 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0149,529,308 - 49,557,423 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
UU_Cfam_GSD_1.0149,480,343 - 49,508,532 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Wtap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946143,966,743 - 143,997,439 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648911,227,156 - 11,249,818 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493648911,222,513 - 11,249,432 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WTAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl17,622,547 - 7,651,961 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.117,622,544 - 7,651,732 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.219,419,861 - 9,447,657 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WTAP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11387,328,228 - 87,357,868 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604059,727,150 - 59,756,923 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wtap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248553,205,543 - 3,235,979 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248553,205,543 - 3,236,134 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Wtap
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v12191,714,874 - 191,740,045 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Wtap
46 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:139
Count of miRNA genes:115
Interacting mature miRNAs:121
Transcripts:ENSRNOT00000025936
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)14345783787558729Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)1774611852746118Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12940927974409279Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)139728272132889942Rat
4889929Bss87Bone structure and strength QTL 876.7tibia area (VT:1000281)tibia-fibula cortical bone endosteal cross-sectional area (CMO:0001722)14630261591302615Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)14345783787558729Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)14630261591302615Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)14212296887122968Rat
2313065Bss67Bone structure and strength QTL 673.10.0001tibia area (VT:1000281)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
7421626Bp360Blood pressure QTL 3600.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)1694102251941022Rat
1357401Bw43Body weight QTL 433.75body mass (VT:0001259)body weight (CMO:0000012)1690935351909353Rat
2313069Bss68Bone structure and strength QTL 682.90.0001tibia size trait (VT:0100001)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
631494Bp95Blood pressure QTL 95400.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)11731537851816258Rat
70225Bp58Blood pressure QTL 583.3arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134184556172281316Rat
2313075Bss66Bone structure and strength QTL 663.40.0001tibia length (VT:0004357)tibia length (CMO:0000450)14630261591302615Rat
5684998Bss101Bone structure and strength QTL 1013.6tibia strength trait (VT:1000284)tibia ultimate force (CMO:0001734)1690935351909353Rat
5684999Bss102Bone structure and strength QTL 1025.57e-07tibia strength trait (VT:1000284)tibia stiffness (CMO:0001735)1690935351909353Rat
10059597Bp377Blood pressure QTL 3773.420.025arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)134565911208798288Rat
1331778Rf28Renal function QTL 284.66urine potassium amount (VT:0010539)urine potassium excretion rate (CMO:0000761)14345783787558729Rat
2313077Bss69Bone structure and strength QTL 693.50.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)14630261591302615Rat
1578756Iddm22Insulin dependent diabetes mellitus QTL 222.7blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)12050832665508326Rat
1331785Rf27Renal function QTL 274.643urine sodium amount (VT:0006274)urine sodium level (CMO:0000129)13070837587558729Rat
631508Sald1Serum aldosterone level QTL 13.7blood aldosterone amount (VT:0005346)serum aldosterone level (CMO:0000487)11168446456684464Rat
1300172Bp172Blood pressure QTL 1723.56arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)13456572679565726Rat
4889451Eae29Experimental allergic encephalomyelitis QTL 295.51nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)1774612152746121Rat
1558642Prcr2Prostate cancer resistance QTL 24.3prostate integrity trait (VT:0010571)area of ventral prostate occupied by tumorous lesions to total ventral prostate area ratio (CMO:0000899)11037949255379492Rat
2313092Bmd72Bone mineral density QTL 722.50.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)14630261591302615Rat
2313097Bss70Bone structure and strength QTL 703.50.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)14630261591302615Rat
9589820Insglur3Insulin/glucose ratio QTL 310.750.001blood insulin amount (VT:0001560)calculated plasma insulin level (CMO:0002170)14350995288509952Rat
1354599Bw29Body weight QTL 293.460.001body mass (VT:0001259)body weight (CMO:0000012)14212296887122968Rat
2302038Pia31Pristane induced arthritis QTL 315.50.001blood autoantibody amount (VT:0003725)serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)11282049457820494Rat
4889919Bss86Bone structure and strength QTL 864.1tibia area (VT:1000281)tibia midshaft total cross-sectional area (CMO:0001715)14630261591302615Rat
8552948Pigfal11Plasma insulin-like growth factor 1 level QTL 114.7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)14350995288509952Rat
634353Rends2Renal damage susceptibility QTL 20.05kidney blood vessel morphology trait (VT:0000530)organ lesion measurement (CMO:0000677)12065642065656420Rat

Markers in Region
RH142762  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2147,686,302 - 47,686,588 (+)MAPPERmRatBN7.2
Rnor_6.0147,962,869 - 47,963,154NCBIRnor6.0
Rnor_5.0151,786,180 - 51,786,465UniSTSRnor5.0
RGSC_v3.4141,912,490 - 41,912,775UniSTSRGSC3.4
Celera143,371,446 - 43,371,731UniSTS
RH 3.4 Map1565.8UniSTS
Cytogenetic Map1q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001113542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001113543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001113544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA900399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ202659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB613741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB613959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK478322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO561762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV108433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX570823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV714133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000025936   ⟹   ENSRNOP00000025936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl150,071,211 - 50,088,135 (+)Ensembl
mRatBN7.2 Ensembl147,665,965 - 47,691,065 (+)Ensembl
Rnor_6.0 Ensembl147,942,500 - 47,967,631 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079312   ⟹   ENSRNOP00000072376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl150,070,769 - 50,088,135 (+)Ensembl
mRatBN7.2 Ensembl147,666,248 - 47,683,840 (+)Ensembl
Rnor_6.0 Ensembl147,942,800 - 47,959,694 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102248   ⟹   ENSRNOP00000077397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl150,071,541 - 50,096,072 (+)Ensembl
mRatBN7.2 Ensembl147,672,470 - 47,691,065 (+)Ensembl
RefSeq Acc Id: NM_001113542   ⟹   NP_001107014
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,070,973 - 50,096,074 (+)NCBI
mRatBN7.2147,665,965 - 47,691,067 (+)NCBI
Rnor_6.0147,942,500 - 47,967,633 (+)NCBI
Rnor_5.0151,781,701 - 51,806,726 (-)NCBI
RGSC_v3.4141,891,437 - 41,917,254 (+)RGD
Celera143,351,111 - 43,376,211 (+)RGD
Sequence:
RefSeq Acc Id: NM_001113543   ⟹   NP_001107015
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,070,973 - 50,088,138 (+)NCBI
mRatBN7.2147,665,965 - 47,683,131 (+)NCBI
Rnor_6.0147,942,500 - 47,959,697 (+)NCBI
Rnor_5.0151,781,701 - 51,806,726 (-)NCBI
RGSC_v3.4141,891,437 - 41,917,254 (+)RGD
Celera143,351,111 - 43,368,274 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001113544   ⟹   NP_001107016
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,071,273 - 50,088,138 (+)NCBI
mRatBN7.2147,666,265 - 47,683,131 (+)NCBI
Rnor_6.0147,942,800 - 47,959,697 (+)NCBI
Rnor_5.0151,781,701 - 51,806,726 (-)NCBI
RGSC_v3.4141,891,437 - 41,917,254 (+)RGD
Celera143,351,411 - 43,368,274 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006227892   ⟹   XP_006227954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,071,258 - 50,096,074 (+)NCBI
mRatBN7.2147,666,252 - 47,691,067 (+)NCBI
Rnor_6.0147,942,755 - 47,967,633 (+)NCBI
Rnor_5.0151,781,701 - 51,806,726 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006227893   ⟹   XP_006227955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,071,434 - 50,096,074 (+)NCBI
mRatBN7.2147,666,605 - 47,691,067 (+)NCBI
Rnor_6.0147,942,925 - 47,967,633 (+)NCBI
Rnor_5.0151,781,701 - 51,806,726 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039086890   ⟹   XP_038942818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,088,454 - 50,096,074 (+)NCBI
mRatBN7.2147,682,112 - 47,691,067 (+)NCBI
RefSeq Acc Id: XM_039086893   ⟹   XP_038942821
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,087,183 - 50,096,074 (+)NCBI
mRatBN7.2147,682,112 - 47,691,067 (+)NCBI
RefSeq Acc Id: XM_039086894   ⟹   XP_038942822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,071,258 - 50,088,138 (+)NCBI
mRatBN7.2147,666,252 - 47,683,133 (+)NCBI
RefSeq Acc Id: XM_063270739   ⟹   XP_063126809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,071,024 - 50,088,138 (+)NCBI
RefSeq Acc Id: XM_063270747   ⟹   XP_063126817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,071,518 - 50,088,138 (+)NCBI
RefSeq Acc Id: NP_001107014   ⟸   NM_001113542
- Peptide Label: isoform a
- UniProtKB: D3ZPY0 (UniProtKB/TrEMBL),   A0A8I5XW36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001107015   ⟸   NM_001113543
- Peptide Label: isoform b
- UniProtKB: A0A0G2K2U2 (UniProtKB/TrEMBL),   A6KP27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001107016   ⟸   NM_001113544
- Peptide Label: isoform b
- UniProtKB: A0A0G2K2U2 (UniProtKB/TrEMBL),   A6KP27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227954   ⟸   XM_006227892
- Peptide Label: isoform X1
- UniProtKB: D3ZPY0 (UniProtKB/TrEMBL),   A0A8I5XW36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227955   ⟸   XM_006227893
- Peptide Label: isoform X1
- UniProtKB: D3ZPY0 (UniProtKB/TrEMBL),   A0A8I5XW36 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000072376   ⟸   ENSRNOT00000079312
Ensembl Acc Id: ENSRNOP00000025936   ⟸   ENSRNOT00000025936
RefSeq Acc Id: XP_038942822   ⟸   XM_039086894
- Peptide Label: isoform X3
- UniProtKB: A6KP27 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942818   ⟸   XM_039086890
- Peptide Label: isoform X2
- UniProtKB: A6KP29 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038942821   ⟸   XM_039086893
- Peptide Label: isoform X2
- UniProtKB: A6KP29 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000077397   ⟸   ENSRNOT00000102248
RefSeq Acc Id: XP_063126809   ⟸   XM_063270739
- Peptide Label: isoform X3
- UniProtKB: A6KP27 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126817   ⟸   XM_063270747
- Peptide Label: isoform X3
- UniProtKB: A6KP27 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZPY0-F1-model_v2 AlphaFold D3ZPY0 1-395 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13689612
Promoter ID:EPDNEW_R136
Type:initiation region
Name:Wtap_2
Description:WT1 associated protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R137  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0147,942,502 - 47,942,562EPDNEW
RGD ID:13689613
Promoter ID:EPDNEW_R137
Type:multiple initiation site
Name:Wtap_1
Description:WT1 associated protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R136  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0147,942,783 - 47,942,843EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563824 AgrOrtholog
BioCyc Gene G2FUF-61595 BioCyc
Ensembl Genes ENSRNOG00000019091 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025936 ENTREZGENE
  ENSRNOT00000025936.9 UniProtKB/TrEMBL
  ENSRNOT00000079312 ENTREZGENE
  ENSRNOT00000079312.3 UniProtKB/TrEMBL
  ENSRNOT00000102248 ENTREZGENE
  ENSRNOT00000102248.2 UniProtKB/TrEMBL
InterPro WTAP UniProtKB/TrEMBL
KEGG Report rno:499020 UniProtKB/TrEMBL
NCBI Gene 499020 ENTREZGENE
PANTHER PRE-MRNA-SPLICING REGULATOR WTAP UniProtKB/TrEMBL
  PRE-MRNA-SPLICING REGULATOR WTAP UniProtKB/TrEMBL
  PTHR15217 UniProtKB/TrEMBL
Pfam Wtap UniProtKB/TrEMBL
PhenoGen Wtap PhenoGen
RatGTEx ENSRNOG00000019091 RatGTEx
UniProt A0A0G2K2U2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5XW36 ENTREZGENE, UniProtKB/TrEMBL
  A6KP27 ENTREZGENE, UniProtKB/TrEMBL
  A6KP29 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPY0 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Wtap  WT1 associated protein  Wtap  Wilms tumor 1 associated protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Wtap  Wilms tumor 1 associated protein  Wtap  Wilms' tumour 1-associating protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Wtap  Wilms' tumour 1-associating protein  RGD1563824_predicted  similar to Wilms tumor 1-associating protein (WT1-associated protein) homolog) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-10 RGD1563824_predicted  similar to Wilms tumor 1-associating protein (WT1-associated protein) homolog) (predicted)    similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog) (predicted)  Name updated 1299863 APPROVED
2006-03-07 RGD1563824_predicted  similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog) (predicted)  LOC499020  similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499020  similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog)      Symbol and Name status set to provisional 70820 PROVISIONAL