Wtap (WT1 associated protein) - Rat Genome Database

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Gene: Wtap (WT1 associated protein) Rattus norvegicus
Analyze
Symbol: Wtap
Name: WT1 associated protein
RGD ID: 1563824
Description: Predicted to enable identical protein binding activity. Predicted to be involved in mRNA processing and regulation of alternative mRNA splicing, via spliceosome. Predicted to be located in cytoplasm; nuclear membrane; and nuclear speck. Predicted to be part of RNA N6-methyladenosine methyltransferase complex. Predicted to be active in nucleus. Orthologous to human WTAP (WT1 associated protein); INTERACTS WITH amitrole; bisphenol A; cadmium dichloride.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC499020; pre-mRNA-splicing regulator WTAP; RGD1563824; similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog); similar to Wilms tumor 1-associating protein (WT1-associated protein) homolog); Wilms tumor 1 associated protein; Wilms' tumour 1-associating protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8150,070,973 - 50,096,074 (+)NCBIGRCr8
mRatBN7.2147,665,965 - 47,691,067 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,665,965 - 47,691,065 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx148,214,813 - 48,239,914 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,202,806 - 54,227,929 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0148,290,329 - 48,315,430 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,942,500 - 47,967,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,942,500 - 47,967,631 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0151,781,701 - 51,806,726 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,891,437 - 41,917,254 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera143,351,111 - 43,376,211 (+)NCBICelera
Cytogenetic Map1q11NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WtapRat3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndrome  ISORGD:13214618554872ClinVar Annotator: match by term: 3-methylglutaconic aciduria with deafness, encephalopathy, and Leigh-like syndromeClinVarPMID:15220921|PMID:22683713|PMID:26863999|PMID:28492532

1 to 20 of 81 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WtapRat1,2-dichloroethane increases expressionISORGD:13214626480464ethylene dichloride results in increased expression of WTAP mRNACTDPMID:28960355
WtapRat1,2-dimethylhydrazine decreases expressionISORGD:132146264804641,2-Dimethylhydrazine results in decreased expression of WTAP mRNACTDPMID:22206623
WtapRat2,3',4,4',5-Pentachlorobiphenyl increases expressionISORGD:132146264804642,3',4,4',5-pentachlorobiphenyl results in increased expression of WTAP mRNACTDPMID:31388691
WtapRat2,3,7,8-tetrachlorodibenzodioxine increases expressionISORGD:13214626480464Tetrachlorodibenzodioxin results in increased expression of WTAP mRNACTDPMID:21354282
WtapRat2,3,7,8-tetrachlorodibenzodioxine affects expressionISORGD:13214626480464Tetrachlorodibenzodioxin affects the expression of WTAP mRNACTDPMID:24680724
WtapRat2,4,6-tribromophenol increases expressionISORGD:132146264804642,4,6-tribromophenol results in increased expression of WTAP mRNA; 2,4,6-tribromophenol results in increased expression of WTAP more ...CTDPMID:38157273
WtapRat2,4,6-tribromophenol increases expressionISORGD:132146164804642,4,6-tribromophenol results in increased expression of WTAP mRNACTDPMID:38157273
WtapRat2,4,6-trichlorophenol increases expressionISORGD:132146264804642,4,6-trichlorophenol results in increased expression of WTAP mRNA; 2,4,6-trichlorophenol results in increased expression of WTAP more ...CTDPMID:38157273
WtapRat5-fluorouracil multiple interactionsISORGD:13214616480464TP53 protein affects the reaction [Fluorouracil results in decreased expression of WTAP mRNA]CTDPMID:15016801
WtapRatall-trans-retinoic acid increases expressionISORGD:13214616480464Tretinoin results in increased expression of WTAP mRNACTDPMID:23724009
WtapRatamiodarone increases expressionISORGD:13214616480464Amiodarone results in increased expression of WTAP mRNACTDPMID:19774075
WtapRatamitrole decreases expressionEXP 6480464Amitrole results in decreased expression of WTAP mRNACTDPMID:38685447
WtapRatantirheumatic drug decreases expressionISORGD:13214616480464Antirheumatic Agents results in decreased expression of WTAP mRNACTDPMID:24449571
WtapRatAroclor 1254 decreases expressionISORGD:13214626480464Chlorodiphenyl (54% Chlorine) results in decreased expression of WTAP mRNACTDPMID:23650126
WtapRatarsane increases expressionISORGD:13214616480464Arsenic results in increased expression of WTAPCTDPMID:35363433
WtapRatarsenic atom increases expressionISORGD:13214616480464Arsenic results in increased expression of WTAPCTDPMID:35363433
WtapRatbenzo[a]pyrene increases expressionISORGD:13214616480464Benzo(a)pyrene results in increased expression of WTAP mRNACTDPMID:17879257
WtapRatbenzo[a]pyrene diol epoxide I decreases expressionISORGD:132146164804647,8-Dihydro-7,8-dihydroxybenzo(a)pyrene 9,10-oxide results in decreased expression of WTAP mRNACTDPMID:20018196
WtapRatbis(2-ethylhexyl) phthalate increases expressionISORGD:13214626480464Diethylhexyl Phthalate results in increased expression of WTAP mRNACTDPMID:36423848
WtapRatbisphenol A increases expressionEXP 6480464bisphenol A results in increased expression of WTAP mRNACTDPMID:25181051

1 to 20 of 81 rows

Biological Process
1 to 9 of 9 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WtapRatmRNA modification involved_inIEAInterPro:IPR0337571600115GO_REF:0000002InterProGO_REF:0000002
WtapRatmRNA processing involved_inISORGD:13214611624291 PMID:24316715, PMID:24407421, PMID:24981863RGDPMID:24316715|PMID:24407421|PMID:24981863
WtapRatmRNA processing involved_inIEAUniProtKB:Q15007|ensembl:ENSP000004794381600115GO_REF:0000107EnsemblGO_REF:0000107
WtapRatmRNA processing involved_inIEAUniProtKB-KW:KW-05071600115GO_REF:0000043UniProtGO_REF:0000043
WtapRatregulation of alternative mRNA splicing, via spliceosome involved_inISORGD:13214611624291 PMID:24407421RGDPMID:24407421
WtapRatregulation of alternative mRNA splicing, via spliceosome involved_inIEAUniProtKB:Q15007|ensembl:ENSP000004794381600115GO_REF:0000107EnsemblGO_REF:0000107
WtapRatregulation of alternative mRNA splicing, via spliceosome involved_inIBAFB:FBgn0000662|PANTHER:PTN000390848|UniProtKB:Q150071600115GO_REF:0000033GO_CentralGO_REF:0000033
WtapRatregulation of alternative mRNA splicing, via spliceosome involved_inIEAInterPro:IPR0337571600115GO_REF:0000002InterProGO_REF:0000002
WtapRatRNA splicing involved_inIEAUniProtKB-KW:KW-05081600115GO_REF:0000043UniProtGO_REF:0000043
1 to 9 of 9 rows

Cellular Component
1 to 19 of 19 rows

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WtapRatcytoplasm located_inISORGD:13214621624291 PMID:29547716RGDPMID:29547716
WtapRatnuclear membrane located_inISORGD:13214611624291 PMID:10942595RGDPMID:10942595
WtapRatnuclear membrane located_inIEAUniProtKB:Q15007|ensembl:ENSP000004794381600115GO_REF:0000107EnsemblGO_REF:0000107
WtapRatnuclear speck located_inISORGD:1321461|UniProtKB:Q15007-11624291 RGDGO_REF:0000052
WtapRatnuclear speck located_inIEAUniProtKB:Q15007|ensembl:ENSP000004794381600115GO_REF:0000107EnsemblGO_REF:0000107
WtapRatnuclear speck located_inISORGD:13214611624291 PMID:24100041, PMID:24407421RGDPMID:24100041|PMID:24407421
WtapRatnucleoplasm located_inISORGD:13214611624291 PMID:24100041RGDPMID:24100041
WtapRatnucleoplasm located_inIEAUniProtKB:Q15007|ensembl:ENSP000004794381600115GO_REF:0000107EnsemblGO_REF:0000107
WtapRatnucleoplasm located_inISORGD:13214621624291 PMID:11001926RGDPMID:11001926
WtapRatnucleus located_inISORGD:13214621624291 PMID:14681305, PMID:29547716RGDPMID:14681305|PMID:29547716
WtapRatnucleus located_inIEAUniProtKB:Q15007|ensembl:ENSP000004794381600115GO_REF:0000107EnsemblGO_REF:0000107
WtapRatnucleus located_inIEAUniProtKB-SubCell:SL-01911600115GO_REF:0000044UniProtGO_REF:0000044
WtapRatnucleus is_active_inIBAFB:FBgn0000662|MGI:1926395|PANTHER:PTN000390848|TAIR:locus:2080275|UniProtKB:Q150071600115GO_REF:0000033GO_CentralGO_REF:0000033
WtapRatnucleus located_inIEAUniProtKB-KW:KW-05391600115GO_REF:0000043UniProtGO_REF:0000043
WtapRatnucleus located_inISORGD:13214611624291 PMID:10942595, PMID:24316715, PMID:26458103RGDPMID:10942595|PMID:24316715|PMID:26458103
WtapRatnucleus located_inIEAInterPro:IPR0337571600115GO_REF:0000002InterProGO_REF:0000002
WtapRatRNA N6-methyladenosine methyltransferase complex part_ofISORGD:13214611624291 PMID:24316715, PMID:24407421, PMID:24981863, PMID:29348140, PMID:29506078, PMID:29507755RGDPMID:24316715|PMID:24407421|PMID:24981863|PMID:29348140|PMID:29506078|PMID:29507755
WtapRatRNA N6-methyladenosine methyltransferase complex part_ofISORGD:13214621624291 PMID:29547716RGDPMID:29547716
WtapRatRNA N6-methyladenosine methyltransferase complex part_ofIEAUniProtKB:Q15007|ensembl:ENSP000004794381600115GO_REF:0000107EnsemblGO_REF:0000107
1 to 19 of 19 rows

Molecular Function

  
Object Symbol
Species
Term
Qualifier
Evidence
With
Reference
Notes
Source
Original Reference(s)
WtapRatidentical protein binding enablesISORGD:13214611624291UniProtKB:Q15007 PMID:32296183RGDPMID:32296183
WtapRatidentical protein binding enablesIEAUniProtKB:Q15007|ensembl:ENSP000004794381600115GO_REF:0000107EnsemblGO_REF:0000107
WtapRatprotein binding enablesISORGD:1321461,UniProtKB:Q15007-11624291UniProtKB:Q9HCE5 PMID:24316715RGDPMID:24316715
WtapRatprotein binding enablesISORGD:13214621624291UniProtKB:Q96A23 PMID:12522145RGDPMID:12522145
WtapRatprotein binding enablesISORGD:13214611624291UniProtKB:P19544-6|UniProtKB:P25786|UniProtKB:P43364|UniProtKB:P63104|UniProtKB:Q13422|UniProtKB:Q13422-7|UniProtKB:Q13895|UniProtKB:Q15025|UniProtKB:Q16600|UniProtKB:Q6UXT9|UniProtKB:Q7Z3I7|UniProtKB:Q8N1B4|UniProtKB:Q99081-3|UniProtKB:Q9GZT3 PMID:15161933, PMID:16189514, PMID:25416956, PMID:28514442, PMID:29507755, PMID:32296183, PMID:33961781, PMID:35271311RGDPMID:15161933|PMID:16189514|PMID:25416956|PMID:28514442|PMID:29507755|PMID:32296183|PMID:33961781|PMID:35271311
WtapRatprotein binding enablesISORGD:1321461,UniProtKB:Q15007-21624291UniProtKB:O43464|UniProtKB:O60333-2|UniProtKB:O76024|UniProtKB:P07339|UniProtKB:P41219|UniProtKB:P42858|UniProtKB:P54252|UniProtKB:P60891 PMID:32814053RGDPMID:32814053


#
Reference Title
Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
PMID:8889548   PMID:10942595   PMID:11001926   PMID:14681305   PMID:15326124   PMID:24100041   PMID:24316715   PMID:24407421   PMID:24981863   PMID:26458103   PMID:29348140   PMID:29506078  
PMID:29507755   PMID:29547716   PMID:36894806  



Wtap
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8150,070,973 - 50,096,074 (+)NCBIGRCr8
mRatBN7.2147,665,965 - 47,691,067 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl147,665,965 - 47,691,065 (+)EnsemblmRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx148,214,813 - 48,239,914 (+)NCBIRnor_SHRUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0154,202,806 - 54,227,929 (+)NCBIRnor_SHRSPUTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0148,290,329 - 48,315,430 (+)NCBIRnor_WKYUTH_Rnor_WKY_Bbb_1.0
Rnor_6.0147,942,500 - 47,967,633 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl147,942,500 - 47,967,631 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.0151,781,701 - 51,806,726 (-)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4141,891,437 - 41,917,254 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera143,351,111 - 43,376,211 (+)NCBICelera
Cytogenetic Map1q11NCBI
WTAP
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh386159,726,693 - 159,756,319 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl6159,725,585 - 159,756,319 (+)EnsemblGRCh38hg38GRCh38
GRCh376160,148,149 - 160,177,351 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 366160,068,142 - 160,097,341 (+)NCBINCBI36Build 36hg18NCBI36
Celera6160,794,229 - 160,823,430 (+)NCBICelera
Cytogenetic Map6q25.3NCBI
HuRef6157,617,339 - 157,646,781 (+)NCBIHuRef
CHM1_16160,410,378 - 160,439,680 (+)NCBICHM1_1
T2T-CHM13v2.06160,967,457 - 161,001,943 (+)NCBIT2T-CHM13v2.0
Wtap
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391713,185,686 - 13,211,430 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1713,185,683 - 13,213,056 (-)EnsemblGRCm39 Ensembl
GRCm381712,966,799 - 12,992,543 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1712,966,796 - 12,994,169 (-)EnsemblGRCm38mm10GRCm38
MGSCv371713,159,665 - 13,185,405 (-)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv361712,815,617 - 12,835,478 (-)NCBIMGSCv36mm8
Celera1712,998,333 - 13,025,542 (-)NCBICelera
Cytogenetic Map17A1NCBI
cM Map178.73NCBI
Wtap
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495543921,146,206 - 21,182,486 (-)EnsemblChiLan1.0
ChiLan1.0NW_00495543921,149,970 - 21,174,479 (-)NCBIChiLan1.0ChiLan1.0
WTAP
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v25179,824,106 - 179,854,540 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan16177,729,160 - 177,759,590 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v06157,609,779 - 157,639,122 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.16162,620,947 - 162,650,683 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl6162,621,842 - 162,650,683 (+)Ensemblpanpan1.1panPan2
WTAP
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1148,976,523 - 49,004,536 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl148,976,499 - 49,003,961 (+)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha149,818,344 - 49,846,503 (+)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.0149,160,699 - 49,189,019 (+)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl149,160,693 - 49,189,019 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1149,043,176 - 49,071,381 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0148,914,192 - 48,942,472 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0149,529,308 - 49,557,423 (+)NCBIUU_Cfam_GSD_1.0
UU_Cfam_GSD_1.0149,480,343 - 49,508,532 (+)NCBIUU_Cfam_GSD_1.0
Wtap
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024404946143,966,743 - 143,997,439 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648911,227,156 - 11,249,818 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648911,222,513 - 11,249,432 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
WTAP
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl17,622,547 - 7,651,961 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.117,622,544 - 7,651,732 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.219,419,861 - 9,447,657 (-)NCBISscrofa10.2Sscrofa10.2susScr3
WTAP
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11387,328,228 - 87,357,868 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_02366604059,727,150 - 59,756,923 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Wtap
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248553,205,543 - 3,235,979 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046248553,205,543 - 3,236,134 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

.

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Variants in Wtap
82 total Variants

Predicted Target Of
Summary Value
Count of predictions:139
Count of miRNA genes:115
Interacting mature miRNAs:121
Transcripts:ENSRNOT00000025936
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


1 to 10 of 45 rows
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD ID
Symbol
Name
LOD
P Value
Trait
Sub Trait
Chr
Start
Stop
Species
1331732Srn4Serum renin concentration QTL 44.467renin activity (VT:0005581)plasma renin activity level (CMO:0000116)13523959878430678Rat
2313059Bss55Bone structure and strength QTL 553.20.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)143284731118944897Rat
631688Hcas2Hepatocarcinoma susceptibility QTL 230.0001liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)15925874115540829Rat
1357397Bw41Body weight QTL 414.190.0001body mass (VT:0001259)body weight (CMO:0000012)12234064749361612Rat
1358359Sradr1Stress Responsive Adrenal Weight QTL 14.74adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)130882023123479925Rat
1331792Rf29Renal function QTL 294.589urine potassium amount (VT:0010539)urine potassium level (CMO:0000128)13523959878430678Rat
2313062Bmd73Bone mineral density QTL 733.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)11148131282174945Rat
8552900Pigfal1Plasma insulin-like growth factor 1 level QTL 17.4blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)13483685879836858Rat
1554320Bmd1Bone mineral density QTL 112.20.0001femur mineral mass (VT:0010011)volumetric bone mineral density (CMO:0001553)150910886060548Rat
1354643Foco2Food consumption QTL 27.170.0001eating behavior trait (VT:0001431)food intake rate (CMO:0000427)13344984878449848Rat

1 to 10 of 45 rows
RH142762  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2147,686,302 - 47,686,588 (+)MAPPERmRatBN7.2
Rnor_6.0147,962,869 - 47,963,154NCBIRnor6.0
Rnor_5.0151,786,180 - 51,786,465UniSTSRnor5.0
RGSC_v3.4141,912,490 - 41,912,775UniSTSRGSC3.4
Celera143,371,446 - 43,371,731UniSTS
RH 3.4 Map1565.8UniSTS
Cytogenetic Map1q11UniSTS




alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
9 11 49 113 91 90 59 25 59 6 218 97 93 45 60 31


1 to 23 of 23 rows
RefSeq Transcripts NM_001113542 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001113543 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001113544 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227892 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006227893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086893 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039086894 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270739 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270747 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AA900399 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BQ202659 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB613741 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB613959 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474077 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CK478322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CO561762 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CV108433 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CX570823 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DV714133 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ212824 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ228682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
1 to 23 of 23 rows

Ensembl Acc Id: ENSRNOT00000025936   ⟹   ENSRNOP00000025936
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl147,665,965 - 47,691,065 (+)Ensembl
Rnor_6.0 Ensembl147,942,500 - 47,967,631 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079312   ⟹   ENSRNOP00000072376
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl147,666,248 - 47,683,840 (+)Ensembl
Rnor_6.0 Ensembl147,942,800 - 47,959,694 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000102248   ⟹   ENSRNOP00000077397
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl147,672,470 - 47,691,065 (+)Ensembl
RefSeq Acc Id: NM_001113542   ⟹   NP_001107014
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,070,973 - 50,096,074 (+)NCBI
mRatBN7.2147,665,965 - 47,691,067 (+)NCBI
Rnor_6.0147,942,500 - 47,967,633 (+)NCBI
Rnor_5.0151,781,701 - 51,806,726 (-)NCBI
RGSC_v3.4141,891,437 - 41,917,254 (+)RGD
Celera143,351,111 - 43,376,211 (+)RGD
Sequence:
RefSeq Acc Id: NM_001113543   ⟹   NP_001107015
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,070,973 - 50,088,138 (+)NCBI
mRatBN7.2147,665,965 - 47,683,131 (+)NCBI
Rnor_6.0147,942,500 - 47,959,697 (+)NCBI
Rnor_5.0151,781,701 - 51,806,726 (-)NCBI
RGSC_v3.4141,891,437 - 41,917,254 (+)RGD
Celera143,351,111 - 43,368,274 (+)NCBI
Sequence:
RefSeq Acc Id: NM_001113544   ⟹   NP_001107016
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,071,273 - 50,088,138 (+)NCBI
mRatBN7.2147,666,265 - 47,683,131 (+)NCBI
Rnor_6.0147,942,800 - 47,959,697 (+)NCBI
Rnor_5.0151,781,701 - 51,806,726 (-)NCBI
RGSC_v3.4141,891,437 - 41,917,254 (+)RGD
Celera143,351,411 - 43,368,274 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006227892   ⟹   XP_006227954
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,071,258 - 50,096,074 (+)NCBI
mRatBN7.2147,666,252 - 47,691,067 (+)NCBI
Rnor_6.0147,942,755 - 47,967,633 (+)NCBI
Rnor_5.0151,781,701 - 51,806,726 (-)NCBI
Sequence:
RefSeq Acc Id: XM_006227893   ⟹   XP_006227955
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,071,434 - 50,096,074 (+)NCBI
mRatBN7.2147,666,605 - 47,691,067 (+)NCBI
Rnor_6.0147,942,925 - 47,967,633 (+)NCBI
Rnor_5.0151,781,701 - 51,806,726 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039086890   ⟹   XP_038942818
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,088,454 - 50,096,074 (+)NCBI
mRatBN7.2147,682,112 - 47,691,067 (+)NCBI
RefSeq Acc Id: XM_039086893   ⟹   XP_038942821
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,087,183 - 50,096,074 (+)NCBI
mRatBN7.2147,682,112 - 47,691,067 (+)NCBI
RefSeq Acc Id: XM_039086894   ⟹   XP_038942822
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,071,258 - 50,088,138 (+)NCBI
mRatBN7.2147,666,252 - 47,683,133 (+)NCBI
RefSeq Acc Id: XM_063270739   ⟹   XP_063126809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,071,024 - 50,088,138 (+)NCBI
RefSeq Acc Id: XM_063270747   ⟹   XP_063126817
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8150,071,518 - 50,088,138 (+)NCBI
1 to 5 of 13 rows
1 to 5 of 13 rows
RefSeq Acc Id: NP_001107014   ⟸   NM_001113542
- Peptide Label: isoform a
- UniProtKB: D3ZPY0 (UniProtKB/TrEMBL),   A0A8I5XW36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001107015   ⟸   NM_001113543
- Peptide Label: isoform b
- UniProtKB: A0A0G2K2U2 (UniProtKB/TrEMBL),   A6KP27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: NP_001107016   ⟸   NM_001113544
- Peptide Label: isoform b
- UniProtKB: A0A0G2K2U2 (UniProtKB/TrEMBL),   A6KP27 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227954   ⟸   XM_006227892
- Peptide Label: isoform X1
- UniProtKB: D3ZPY0 (UniProtKB/TrEMBL),   A0A8I5XW36 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006227955   ⟸   XM_006227893
- Peptide Label: isoform X1
- UniProtKB: D3ZPY0 (UniProtKB/TrEMBL),   A0A8I5XW36 (UniProtKB/TrEMBL)
- Sequence:

Name Modeler Protein Id AA Range Protein Structure
AF-D3ZPY0-F1-model_v2 AlphaFold D3ZPY0 1-395 view protein structure


eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

RGD ID:13689612
Promoter ID:EPDNEW_R136
Type:initiation region
Name:Wtap_2
Description:WT1 associated protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R137  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0147,942,502 - 47,942,562EPDNEW
RGD ID:13689613
Promoter ID:EPDNEW_R137
Type:multiple initiation site
Name:Wtap_1
Description:WT1 associated protein
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Alternative Promoters:null; see alsoEPDNEW_R136  
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0147,942,783 - 47,942,843EPDNEW


1 to 22 of 22 rows
Database
Acc Id
Source(s)
BioCyc Gene G2FUF-61595 BioCyc
Ensembl Genes ENSRNOG00000019091 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000025936 ENTREZGENE
  ENSRNOT00000025936.8 UniProtKB/TrEMBL
  ENSRNOT00000079312 ENTREZGENE
  ENSRNOT00000079312.2 UniProtKB/TrEMBL
  ENSRNOT00000102248 ENTREZGENE
  ENSRNOT00000102248.1 UniProtKB/TrEMBL
InterPro WTAP UniProtKB/TrEMBL
KEGG Report rno:499020 UniProtKB/TrEMBL
NCBI Gene 499020 ENTREZGENE
PANTHER PRE-MRNA-SPLICING REGULATOR WTAP UniProtKB/TrEMBL
  PRE-MRNA-SPLICING REGULATOR WTAP UniProtKB/TrEMBL
  PTHR15217 UniProtKB/TrEMBL
Pfam Wtap UniProtKB/TrEMBL
PhenoGen Wtap PhenoGen
RatGTEx ENSRNOG00000019091 RatGTEx
UniProt A0A0G2K2U2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5XW36 ENTREZGENE, UniProtKB/TrEMBL
  A6KP27 ENTREZGENE, UniProtKB/TrEMBL
  A6KP29 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPY0 ENTREZGENE, UniProtKB/TrEMBL
1 to 22 of 22 rows


Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2017-03-21 Wtap  WT1 associated protein  Wtap  Wilms tumor 1 associated protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-10-23 Wtap  Wilms tumor 1 associated protein  Wtap  Wilms' tumour 1-associating protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Wtap  Wilms' tumour 1-associating protein  RGD1563824_predicted  similar to Wilms tumor 1-associating protein (WT1-associated protein) homolog) (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-10 RGD1563824_predicted  similar to Wilms tumor 1-associating protein (WT1-associated protein) homolog) (predicted)    similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog) (predicted)  Name updated 1299863 APPROVED
2006-03-07 RGD1563824_predicted  similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog) (predicted)  LOC499020  similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog)  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC499020  similar to Wilms tumor 1-associating protein (WT1-associated protein) (Putative pre-mRNA splicing regulator female-lethal(2D) homolog)      Symbol and Name status set to provisional 70820 PROVISIONAL