Plac1 (placenta enriched 1) - Rat Genome Database

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Gene: Plac1 (placenta enriched 1) Rattus norvegicus
Analyze
Symbol: Plac1
Name: placenta enriched 1
RGD ID: 1563777
Description: Predicted to be involved in placenta development. Predicted to act upstream of or within spongiotrophoblast layer developmental growth. Predicted to be located in extracellular region. Orthologous to human PLAC1 (placenta enriched 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; endosulfan.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102550080; placenta-specific 1; placenta-specific protein 1; placenta-specific protein 1-like
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X137,740,896 - 137,874,688 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX137,740,890 - 137,905,210 (-)EnsemblGRCr8
mRatBN7.2X132,821,347 - 132,955,143 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX132,821,347 - 132,985,668 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX134,981,404 - 135,022,313 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X138,564,253 - 138,605,155 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X136,129,952 - 136,170,854 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X157,931,450 - 158,133,506 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX158,569,056 - 158,569,577 (+)Ensemblrn6Rnor6.0
Rnor_6.0 EnsemblX158,053,164 - 158,133,504 (+)Ensemblrn6Rnor6.0
Rnor_5.0X152,508,501 - 152,758,813 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X140,014,910 - 140,055,813 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Cytogenetic MapXq36NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:10995572   PMID:15489334   PMID:22729990  


Genomics

Comparative Map Data
Plac1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X137,740,896 - 137,874,688 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX137,740,890 - 137,905,210 (-)EnsemblGRCr8
mRatBN7.2X132,821,347 - 132,955,143 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 EnsemblX132,821,347 - 132,985,668 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_UtxX134,981,404 - 135,022,313 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0X138,564,253 - 138,605,155 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0X136,129,952 - 136,170,854 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0X157,931,450 - 158,133,506 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 EnsemblX158,569,056 - 158,569,577 (+)Ensemblrn6Rnor6.0
Rnor_6.0 EnsemblX158,053,164 - 158,133,504 (+)Ensemblrn6Rnor6.0
Rnor_5.0X152,508,501 - 152,758,813 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X140,014,910 - 140,055,813 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Cytogenetic MapXq36NCBI
PLAC1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38X134,565,838 - 134,764,322 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 EnsemblX134,565,837 - 134,764,355 (-)Ensemblhg38GRCh38
GRCh37X133,699,868 - 133,898,352 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 36X133,527,539 - 133,620,179 (-)NCBIBuild 36Build 36hg18NCBI36
Build 34X133,425,392 - 133,518,033NCBI
CeleraX134,086,692 - 134,179,370 (-)NCBICelera
Cytogenetic MapXq26.3NCBI
HuRefX123,098,723 - 123,191,076 (-)NCBIHuRef
CHM1_1X133,611,604 - 133,704,211 (-)NCBICHM1_1
T2T-CHM13v2.0X132,891,012 - 133,089,435 (-)NCBIT2T-CHM13v2.0
Plac1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39X52,158,870 - 52,328,969 (-)NCBIGRCm39GRCm39mm39
GRCm39 EnsemblX52,158,872 - 52,328,988 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm38X53,069,993 - 53,240,110 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 EnsemblX53,069,995 - 53,240,111 (-)Ensemblmm10GRCm38
MGSCv37X50,423,179 - 50,467,582 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36X49,314,629 - 49,359,032 (-)NCBIMGSCv36mm8
CeleraX40,495,994 - 40,539,998 (-)NCBICelera
Cytogenetic MapXA5NCBI
cM MapX29.31NCBI
Plac1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_004955473325,158 - 415,625 (+)Ensembl
ChiLan1.0NW_004955473264,265 - 415,616 (+)NCBIChiLan1.0ChiLan1.0
PLAC1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2X134,001,183 - 134,169,153 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan1X134,004,781 - 134,005,817 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v0X123,715,148 - 123,913,821 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.1X134,013,624 - 134,159,805 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 EnsemblX134,013,830 - 134,014,468 (-)EnsemblpanPan2panpan1.1
PLAC1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1X105,200,725 - 105,390,714 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_TashaX91,311,411 - 91,356,422 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0X107,052,170 - 107,053,059 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 EnsemblX107,052,230 - 107,052,868 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1X104,473,935 - 104,518,964 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0X106,339,901 - 106,384,891 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0X106,131,606 - 106,176,593 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Plac1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2X103,353,828 - 103,399,620 (-)NCBIHiC_Itri_2
SpeTri2.0NW_004936691602,707 - 603,342 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
PLAC1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 EnsemblX110,403,437 - 110,539,258 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1X110,403,257 - 110,592,117 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
PLAC1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1X109,735,568 - 109,934,564 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 EnsemblX109,736,338 - 109,736,976 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366606547,340,699 - 47,540,364 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Plac1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462479714,259,180 - 14,435,455 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Plac1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1X116,135,778 - 116,176,819 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Plac1
400 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:46
Count of miRNA genes:41
Interacting mature miRNAs:46
Transcripts:ENSRNOT00000003235
Prediction methods:Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1598872Memor14Memory QTL 144.5exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X97528096142528096Rat
1598856Memor1Memory QTL 11.9exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)X120028026141353710Rat
1598809Memor15Memory QTL 154.4exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X120028026141353710Rat
738025Stresp3Stress response QTL 34.610.0066stress-related behavior trait (VT:0010451)defensive burying - approachX105359969157758123Rat
10059603Bw174Body weight QTL 1743.40.025body mass (VT:0001259)body weight (CMO:0000012)X118973754157758123Rat
2302047Pia34Pristane induced arthritis QTL 345.80.001blood immunoglobulin amount (VT:0002460)serum immunoglobulin G1 level (CMO:0002115)1996916163141916163Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
6 4 39 47 26 24 18 3 18 121 59 7 36 37 69 6

Sequence


Ensembl Acc Id: ENSRNOT00000003235   ⟹   ENSRNOP00000003235
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX137,740,898 - 137,799,275 (-)Ensembl
mRatBN7.2 EnsemblX132,821,350 - 132,985,668 (-)Ensembl
Rnor_6.0 EnsemblX158,053,164 - 158,133,504 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000074170   ⟹   ENSRNOP00000064922
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX137,740,898 - 137,874,561 (-)Ensembl
mRatBN7.2 EnsemblX132,821,430 - 132,955,076 (-)Ensembl
Rnor_6.0 EnsemblX158,569,056 - 158,569,577 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000094212   ⟹   ENSRNOP00000079856
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX137,740,890 - 137,905,210 (-)Ensembl
mRatBN7.2 EnsemblX132,821,349 - 132,985,652 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000105041   ⟹   ENSRNOP00000082384
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX137,740,890 - 137,874,927 (-)Ensembl
mRatBN7.2 EnsemblX132,821,349 - 132,863,793 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000110634   ⟹   ENSRNOP00000080103
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX137,740,898 - 137,777,748 (-)Ensembl
mRatBN7.2 EnsemblX132,821,347 - 132,858,152 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000114351   ⟹   ENSRNOP00000093046
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX137,740,890 - 137,782,433 (-)Ensembl
mRatBN7.2 EnsemblX132,821,348 - 132,862,996 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000146290   ⟹   ENSRNOP00000111021
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX137,740,901 - 137,874,927 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000154112   ⟹   ENSRNOP00000103724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX137,740,896 - 137,782,433 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000160189   ⟹   ENSRNOP00000111741
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX137,740,896 - 137,782,433 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000168114   ⟹   ENSRNOP00000108381
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX137,740,962 - 137,874,927 (-)Ensembl
RefSeq Acc Id: NM_001024894   ⟹   NP_001020065
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X137,740,896 - 137,781,800 (-)NCBI
mRatBN7.2X132,821,347 - 132,862,249 (-)NCBI
Rnor_6.0X158,059,897 - 158,133,506 (+)NCBI
Rnor_5.0X152,508,501 - 152,758,813 (+)NCBI
RGSC_v3.4X140,014,910 - 140,055,813 (-)RGD
Sequence:
RefSeq Acc Id: XM_017602056   ⟹   XP_017457545
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X137,740,896 - 137,874,688 (-)NCBI
mRatBN7.2X132,821,347 - 132,955,143 (-)NCBI
Rnor_6.0X157,931,450 - 158,133,506 (+)NCBI
Sequence:
RefSeq Acc Id: NP_001020065   ⟸   NM_001024894
- Peptide Label: precursor
- UniProtKB: Q4V7E2 (UniProtKB/Swiss-Prot),   A6KUJ7 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017457545   ⟸   XM_017602056
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000003235   ⟸   ENSRNOT00000003235
Ensembl Acc Id: ENSRNOP00000064922   ⟸   ENSRNOT00000074170
Ensembl Acc Id: ENSRNOP00000080103   ⟸   ENSRNOT00000110634
Ensembl Acc Id: ENSRNOP00000082384   ⟸   ENSRNOT00000105041
Ensembl Acc Id: ENSRNOP00000079856   ⟸   ENSRNOT00000094212
Ensembl Acc Id: ENSRNOP00000093046   ⟸   ENSRNOT00000114351
Ensembl Acc Id: ENSRNOP00000111741   ⟸   ENSRNOT00000160189
Ensembl Acc Id: ENSRNOP00000103724   ⟸   ENSRNOT00000154112
Ensembl Acc Id: ENSRNOP00000108381   ⟸   ENSRNOT00000168114
Ensembl Acc Id: ENSRNOP00000111021   ⟸   ENSRNOT00000146290
Protein Domains
ZP-N

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q4V7E2-F1-model_v2 AlphaFold Q4V7E2 1-173 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563777 AgrOrtholog
BioCyc Gene G2FUF-979 BioCyc
Ensembl Genes ENSRNOG00000002379 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
  ENSRNOG00000047095 Ensembl
Ensembl Transcript ENSRNOT00000003235.8 UniProtKB/Swiss-Prot
  ENSRNOT00000074170.2 UniProtKB/Swiss-Prot
  ENSRNOT00000094212.1 UniProtKB/Swiss-Prot
  ENSRNOT00000105041 ENTREZGENE
  ENSRNOT00000114351 ENTREZGENE
  ENSRNOT00000114351.1 UniProtKB/Swiss-Prot
Gene3D-CATH Zona pellucida, ZP-N domain UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7443160 IMAGE-MGC_LOAD
InterPro PLAC1_fam UniProtKB/Swiss-Prot
  ZP-N UniProtKB/Swiss-Prot
KEGG Report rno:317316 UniProtKB/Swiss-Prot
MGC_CLONE MGC:116112 IMAGE-MGC_LOAD
NCBI Gene 317316 ENTREZGENE
PANTHER PTHR14380 UniProtKB/Swiss-Prot
  PTHR14380:SF2 UniProtKB/Swiss-Prot
Pfam ZP-N UniProtKB/Swiss-Prot
PhenoGen Plac1 PhenoGen
RatGTEx ENSRNOG00000002379 RatGTEx
  ENSRNOG00000047095 RatGTEx
UniProt A0A8I5ZPJ6_RAT UniProtKB/TrEMBL
  A0A8I5ZU17_RAT UniProtKB/TrEMBL
  A6KUJ7 ENTREZGENE, UniProtKB/TrEMBL
  PLAC1_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Plac1  placenta enriched 1  LOC102550080  placenta-specific protein 1-like  Data merged from RGD:7688773 737654 PROVISIONAL
2019-08-09 Plac1  placenta enriched 1  Plac1  placenta-specific 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-18 LOC102550080  placenta-specific protein 1-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-02-09 Plac1  placenta-specific 1      Symbol and Name status set to provisional 70820 PROVISIONAL