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Gene: Spata16 (spermatogenesis associated 16) Rattus norvegicus

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Symbol:

Spata16

Name:

spermatogenesis associated 16

RGD ID:

1563726

Description:

Predicted to be involved in spermatid development. Predicted to be located in acrosomal vesicle. Predicted to be active in Golgi apparatus. Human ortholog(s) of this gene implicated in spermatogenic failure 6. Orthologous to human SPATA16 (spermatogenesis associated 16); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; bisphenol AF.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC294932; RGD1563726; similar to Nyd-sp12 protein; spermatogenesis-associated protein 16

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	111,413,958 - 111,794,348 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	111,414,022 - 111,794,346 (+)	Ensembl				GRCr8
mRatBN7.2	2	109,485,287 - 109,865,665 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	109,485,274 - 109,865,659 (+)	Ensembl				mRatBN7.2
Rnor_6.0	2	112,281,326 - 112,659,911 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	112,281,376 - 112,659,927 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	132,316,091 - 132,380,997 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	2	132,001,122 - 132,294,134 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	112,490,919 - 112,853,681 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	104,707,131 - 105,078,173 (+)	NCBI		Celera
Cytogenetic Map	2	q24	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

male infertility (ISS)

male infertility due to globozoospermia (ISO)

spermatogenic failure (ISO)

spermatogenic failure 6 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2-palmitoylglycerol (ISO)

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol AF (EXP)

Butylbenzyl phthalate (ISO)

fulvestrant (ISO)

N,N-diethyl-m-toluamide (EXP)

permethrin (EXP)

potassium dichromate (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

spermatid development (ISO)

spermatogenesis (IBA,IEA,ISO)

Cellular Component

Golgi apparatus (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12529416	PMID:29065458

Genomics

Comparative Map Data

Spata16
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	2	111,413,958 - 111,794,348 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	2	111,414,022 - 111,794,346 (+)	Ensembl				GRCr8
mRatBN7.2	2	109,485,287 - 109,865,665 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	2	109,485,274 - 109,865,659 (+)	Ensembl				mRatBN7.2
Rnor_6.0	2	112,281,326 - 112,659,911 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	2	112,281,376 - 112,659,927 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	2	132,316,091 - 132,380,997 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	2	132,001,122 - 132,294,134 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	2	112,490,919 - 112,853,681 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	2	104,707,131 - 105,078,173 (+)	NCBI		Celera
Cytogenetic Map	2	q24	NCBI

SPATA16
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	3	172,889,357 - 173,141,235 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	3	172,889,357 - 173,141,235 (-)	Ensembl			hg38	GRCh38
GRCh37	3	172,607,147 - 172,859,025 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	3	174,089,841 - 174,341,695 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	3	174,089,851 - 174,341,703	NCBI
Celera	3	171,006,118 - 171,258,045 (-)	NCBI		Celera
Cytogenetic Map	3	q26.31	NCBI
HuRef	3	169,978,096 - 170,229,599 (-)	NCBI		HuRef
CHM1_1	3	172,570,042 - 172,821,943 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	3	175,675,113 - 175,927,030 (-)	NCBI		T2T-CHM13v2.0

Spata16
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	3	26,691,769 - 27,037,398 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	3	26,691,769 - 27,037,361 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	3	26,637,620 - 26,983,249 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	3	26,637,620 - 26,983,212 (+)	Ensembl			mm10	GRCm38
MGSCv37	3	26,536,553 - 26,882,134 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	3	26,828,704 - 27,174,287 (+)	NCBI		MGSCv36	mm8
Celera	3	26,610,852 - 26,954,772 (+)	NCBI		Celera
Cytogenetic Map	3	A3	NCBI
cM Map	3	10.74	NCBI

Spata16
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955420	2,910,749 - 3,134,202 (-)	Ensembl
ChiLan1.0	NW_004955420	2,910,780 - 3,134,177 (-)	NCBI	ChiLan1.0	ChiLan1.0

SPATA16
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	2	170,774,017 - 170,986,973 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	3	170,778,735 - 170,991,691 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	3	169,898,861 - 170,156,969 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	3	178,079,118 - 178,335,617 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	3	178,079,118 - 178,335,617 (-)	Ensembl			panPan2	panpan1.1

SPATA16
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	34	36,995,326 - 37,231,346 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	34	36,972,308 - 37,231,682 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	34	46,006,914 - 46,242,818 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	34	37,080,462 - 37,317,220 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	34	37,079,521 - 37,317,474 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	34	37,017,887 - 37,254,214 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	34	36,987,343 - 37,223,489 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	34	37,244,458 - 37,480,669 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Spata16
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405602	103,757,903 - 103,996,099 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936703	125,603 - 339,700 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936703	125,603 - 339,700 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SPATA16
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	13	111,397,190 - 111,643,986 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	13	111,397,368 - 111,609,539 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

SPATA16
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	15	16,283,640 - 16,540,132 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	15	16,307,852 - 16,539,918 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666063	25,038,451 - 25,301,165 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Spata16
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624730	50,913,852 - 51,154,691 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624730	50,913,919 - 51,154,612 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Spata16
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	3	127,547,740 - 127,805,047 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Spata16
2998 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	79
Count of miRNA genes:	68
Interacting mature miRNAs:	70
Transcripts:	ENSRNOT00000035263
Prediction methods:	Microtar, Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2293671	Bss44	Bone structure and strength QTL 44	10.97	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	2	105628029	150628029	Rat
1298074	Bp164	Blood pressure QTL 164		0.003	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
1598865	Bp296	Blood pressure QTL 296	2.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	82947902	127947902	Rat
1354648	Bp239	Blood pressure QTL 239		0.001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845370	229470703	Rat
1578772	Stresp14	Stress response QTL 14	5	0.001	blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	2	84056790	132859658	Rat
1354649	Kidm17	Kidney mass QTL 17	2.9		kidney mass (VT:0002707)	calculated kidney weight (CMO:0000160)	2	83465462	229820014	Rat
10755499	Bp389	Blood pressure QTL 389	2.61		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	20695736	231474293	Rat
1581576	Pur7	Proteinuria QTL 7		0.0001	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	2	80396178	220931218	Rat
61392	Bp6	Blood pressure QTL 6	7		arterial blood pressure trait (VT:2000000)	pulse pressure (CMO:0000292)	2	82214549	127214549	Rat
1358917	Cm42	Cardiac mass QTL 42	2.82		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
1358913	Cm41	Cardiac mass QTL 41	2.73		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	206613235	Rat
152025242	Bw191	Body weight QTL 191	3.62		body mass (VT:0001259)		2	40306867	124537199	Rat
631198	Cm22	Cardiac mass QTL 22	4.3	0.0008	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	2	78269809	208420281	Rat
7488933	Bp368	Blood pressure QTL 368		0.004	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	104957381	149957381	Rat
1302794	Stl27	Serum triglyceride level QTL 27	4.4	0.0001	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	2	27148328	145807373	Rat
1581569	Uae32	Urinary albumin excretion QTL 32		0.0001	urine protein amount (VT:0005160)	urine albumin excretion rate (CMO:0000757)	2	80396178	220931218	Rat
2317886	Alcrsp23	Alcohol response QTL 23	2.4	0.63	response to alcohol trait (VT:0010489)	duration of loss of righting reflex (CMO:0002289)	2	95142371	140142371	Rat
1358901	Cm38	Cardiac mass QTL 38	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
2317058	Aia13	Adjuvant induced arthritis QTL 13	2.9		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	2	78269809	123269809	Rat
1331760	Bp206	Blood pressure QTL 206	3.62454		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	2	4265106	205135428	Rat
1358899	Kidm23	Kidney mass QTL 23	3.88		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1358908	Bw49	Body weight QTL 49	3.36		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1300155	Bp174	Blood pressure QTL 174	4.09		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	2	44537979	112567334	Rat
2293835	Kiddil5	Kidney dilation QTL 5	3.8		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	159440891	Rat
1358910	Kidm27	Kidney mass QTL 27	5.77		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
1354622	Kidm16	Kidney mass QTL 16	3		kidney mass (VT:0002707)	left kidney wet weight (CMO:0000083)	2	83465462	225110681	Rat
1358911	Kidm28	Kidney mass QTL 28	5.42		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
631266	Bp132	Blood pressure QTL 132		0.0005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	47856345	205135428	Rat
1358904	Cm39	Cardiac mass QTL 39	2.26		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	2	27148328	159440891	Rat
1359035	Bp276	Blood pressure QTL 276			arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	2	100807373	145807373	Rat
2293843	Kiddil6	Kidney dilation QTL 6	3.1		kidney pelvis morphology trait (VT:0004194)	hydronephrosis severity score (CMO:0001208)	2	44537979	184731399	Rat
8662836	Vetf8	Vascular elastic tissue fragility QTL 8	0.66		thoracic aorta molecular composition trait (VT:0010568)	aorta wall extracellular elastin dry weight to aorta wall extracellular collagen weight ratio (CMO:0002003)	2	106869825	151869825	Rat
1358887	Bw50	Body weight QTL 50	2.39		body mass (VT:0001259)	body weight (CMO:0000012)	2	27148557	159440760	Rat
1298080	Bp163	Blood pressure QTL 163		0.02	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	67845182	205135428	Rat
8662832	Vetf7	Vascular elastic tissue fragility QTL 7	3.5		aorta elastin amount (VT:0003905)	aorta wall extracellular elastin dry weight to aorta wall dry weight ratio (CMO:0002002)	2	83400752	223709938	Rat
1298085	Bp165	Blood pressure QTL 165		0.0006	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	2	44537979	205135428	Rat
2290453	Scl55	Serum cholesterol level QTL 55	2.83		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	2	28652666	139067443	Rat
152025206	Hrtrt23	Heart rate QTL 23	5.98		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
1354605	Rf48	Renal function QTL 48	2.9		blood creatinine amount (VT:0005328)	plasma creatinine level (CMO:0000537)	2	76328396	209350714	Rat
2299162	Iddm32	Insulin dependent diabetes mellitus QTL 32	2.36		blood glucose amount (VT:0000188)	age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)	2	93602631	145807373	Rat
1358894	Kidm24	Kidney mass QTL 24	4.03		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	2	27148328	159440891	Rat
152025204	Hrtrt22	Heart rate QTL 22	5.6		heart pumping trait (VT:2000009)		2	30219200	171802126	Rat
724534	Uae6	Urinary albumin excretion QTL 6	10		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	2	80396034	220931416	Rat
61438	Cia7	Collagen induced arthritis QTL 7	4.6	0.0001	joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	2	61051541	143746880	Rat
61374	Edpm2	Estrogen-dependent pituitary mass QTL 2	4.42	0.86	pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	2	78269809	205135428	Rat

Markers in Region

D2Got79

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	2	109,776,051 - 109,776,313 (+)	MAPPER	mRatBN7.2
Rnor_6.0	2	112,574,320 - 112,574,581	NCBI	Rnor6.0
Rnor_5.0	2	132,296,287 - 132,296,548	UniSTS	Rnor5.0
RGSC_v3.4	2	112,755,085 - 112,755,347	RGD	RGSC3.4
RGSC_v3.4	2	112,755,086 - 112,755,347	UniSTS	RGSC3.4
Celera	2	104,990,174 - 104,990,431	UniSTS
RGSC_v3.1	2	112,700,048 - 112,700,309	RGD
RH 3.4 Map	2	728.2	RGD
RH 3.4 Map	2	728.2	UniSTS
Cytogenetic Map	2	q24	UniSTS

D2Mco24

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	111,415,783 - 111,415,990 (+)	Marker Load Pipeline
Rnor_6.0	2	112,283,118 - 112,283,450	NCBI	Rnor6.0
Rnor_5.0	2	131,999,477 - 131,999,809	UniSTS	Rnor5.0
RGSC_v3.4	2	112,451,196 - 112,451,402	UniSTS	RGSC3.4
RGSC_v3.4	2	112,451,195 - 112,451,402	RGD	RGSC3.4
Celera	2	104,708,921 - 104,709,121	UniSTS
Cytogenetic Map	2	q24	UniSTS

U85926

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	2	111,415,783 - 111,415,990 (+)	Marker Load Pipeline
Rnor_6.0	2	112,283,118 - 112,283,450	NCBI	Rnor6.0
Rnor_5.0	2	131,999,477 - 131,999,809	UniSTS	Rnor5.0
RGSC_v3.4	2	112,451,196 - 112,451,402	UniSTS	RGSC3.4
Celera	2	104,708,921 - 104,709,121	UniSTS
Cytogenetic Map	2	q24	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
2	1	18	3	5	3	2	3	2	10	3	16	2	27	2

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001432377	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432378	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432379	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432380	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001063250	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008760901	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017591230	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017595520	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103601	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103602	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103603	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039103604	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282697	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282698	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282699	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282700	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063282701	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473961	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000002	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000035263 ⟹ ENSRNOP00000033704

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	111,414,022 - 111,794,346 (+)	Ensembl
mRatBN7.2 Ensembl	2	109,485,274 - 109,865,659 (+)	Ensembl
Rnor_6.0 Ensembl	2	112,281,376 - 112,659,927 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000138502 ⟹ ENSRNOP00000100757

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	111,414,036 - 111,794,342 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000156980 ⟹ ENSRNOP00000107134

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	2	111,414,061 - 111,793,861 (+)	Ensembl

RefSeq Acc Id:

XM_008760900 ⟹ XP_008759122

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	111,413,997 - 111,794,348 (+)	NCBI
mRatBN7.2	2	109,485,288 - 109,865,665 (+)	NCBI
Rnor_6.0	2	112,281,326 - 112,659,911 (+)	NCBI

Sequence:

show sequence

TGTAGTCTGGTAAATGGGCGGGGCCACGTGGCTGGTCGGTTTTTATTCCTAAGAGCCGTCTGAA
GCTCCACAGTAAGTTGGCCTGGGATTGGGACGGTTGAATCGACAGATGCTGTAGCTGGTAGGCA
CTCAGCAAATCCGACCTGAACCACACAGGAGTCTAGGGGTGGACCAATGGATTCTGGCAAGAGT
AGGAGTTTGGAGACTACAGTGAAGAGAGTCTATCGTGATCTGCTTCTTCCAAAGATAAATACAA
GCAAGAAAATGTCCACCTTAACAAATTCCCCCAACAGCCTGGAAGGGCCACCTGAAATCAAGAA
GAGCTGTGGGGAAAAACAAGCTGAAACCTCCGCTGAGAGAGTAAAGCTCACAAAGAGCATCAAA
GAAAAGCAAAGCAACGAGTTAGAGAAGGTGGCCCTTAAACGGAAGGTTGACAGTGAGGAGAAGC
TAGTTGGAAAGAAAGAGGCAAAGGTAATGGAACTGGACAGCCAGGTGCTCACCACCATACCTCT
GCCTCACATCCCCTTAAAGAACATAATGGATGTGGAAATGAAGCTGGTCTACGTTGACGAAGAA
GATGTGAGCTATGAGTTTGCTCAGTCCTACATGTGCCCTGGGCTTCAAACAACAGGCCAAATTG
CTACCATGATGTTCCCTACAAGTACCCGAGATCATGCCACCCTGCCACAGATTGACAAATGGCT
TCAGGTAGCCTTAAAGGATGCCAGCTCTTGCTATAGACAGAAGAAATACGCAGTGGCAGCAGGA
CAGTTCAGGACAGCACTTGAGCTTTGCAGCAAAGGGGCAGCTCTGGGGAAACCCTTTGAAGCAC
ACGCTGAAGATATAGCAAGCGTGGCTAGTTTCATTGAGACGAAGCTCGTCACATGCTACCTACG
TATGCGGAAACCTGACCTCGCCCTGAACCACGCACACAGGAGTATTGTTTTAAACCCAGCCTAT
TTCCGAAACCATCTTCGTCAGGCAGCCGTGTTTAGATGTCTGGAGAGATACTCAGAAGCTGCCC
GGAGTGCCATGATCGCGGACTACATGTTCTGGCTCTGTGGAGGAAGCGAGCACTGTGTAAGCAA
GCTCATCAAACTGTATTGGCAGGCCATGATTGAAGAAGCCATCACCAGAGCGGAAGCTTTCTCG
GTTATGTACACACCCTTTGCCACAAAAATAAGGGCTGATAAAATAGAAAAGGTGAAAGAGGTGT
TCACGAAAACTCACCCTGCCTATGTGGAGTGCATCTACACAGATACCCAAGGGTTCCATGTACT
GCCACAGACAGCTGACTGGTCCTGTTTTCCTCCCCAACAATATCTGTTGACTCTTGGATTCAAA
AACAAAGAAGATGGAAAGTTTCTGGAGAAAGTGTCAAATAGGAAGCTGCCCACCTTCACAGAAC
ATAAAACTCCCTTCTCTCCACTGACCAGAGAAGATACAGTGAGACACATGGAGATGGTGGGGAA
GCGAATCTTGCCAATCCTGGACTTTATCCGAAGCACGCAACTAAATGGGAATTTCCATGCATGC
TCAGGTGTGATGGAGAAGTTGCACTATGCCAGCCTCCTCAGCCGGCTGCAGAGAGTGAAGGAGC
AGGCCCAGGTGATCAATCAAGCAATGGCAGAGCTGGCAACCGTCCCTTATCTGCAGGACATCAG
TCAACAGGAGGCAGAATTGCTGCAGTCACTAATGGCAGACGCCATGGACACCCTTGAAGGAAGG
AAGAATGATAAGGAGCGTGTGTGGAATACGATCCAAAAGGTCGGACGAATAGAAGACTTTCTGT
ACCAACTAGAAGACAGCTTCTTAAAAACTAAGAAACTGAGAACTGCTCGAAGGCAGAAGACAAA
AATGAAGAGACTTCAAACTGTACAGCAAAACTAGAAACCAGGGAGCAGGCTGACTGGGGTGTCT
AGAGAAGCTGGAGTATATTGGCTCTGGGCAACAAAGGCCATCACTAAAGGGCTCAGGCACACCC
CCCTTGGCAAAGACAGTCTATATTTCATTACTTTTCACTGGTAGGAATAAATTTTG

hide sequence

RefSeq Acc Id:

XM_039103601 ⟹ XP_038959529

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	111,414,024 - 111,793,983 (+)	NCBI
mRatBN7.2	2	109,485,288 - 109,865,311 (+)	NCBI

RefSeq Acc Id:

XM_039103602 ⟹ XP_038959530

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	111,414,025 - 111,793,983 (+)	NCBI
mRatBN7.2	2	109,485,337 - 109,865,315 (+)	NCBI

RefSeq Acc Id:

XM_039103603 ⟹ XP_038959531

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	111,413,988 - 111,793,983 (+)	NCBI
mRatBN7.2	2	109,485,287 - 109,865,315 (+)	NCBI

RefSeq Acc Id:

XM_039103604 ⟹ XP_038959532

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	111,413,958 - 111,793,988 (+)	NCBI
mRatBN7.2	2	109,485,288 - 109,865,317 (+)	NCBI

RefSeq Acc Id:

XM_063282697 ⟹ XP_063138767

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	111,414,027 - 111,794,348 (+)	NCBI

RefSeq Acc Id:

XM_063282698 ⟹ XP_063138768

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	111,415,783 - 111,794,348 (+)	NCBI

RefSeq Acc Id:

XM_063282699 ⟹ XP_063138769

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	111,413,988 - 111,794,348 (+)	NCBI

RefSeq Acc Id:

XM_063282700 ⟹ XP_063138770

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	111,414,024 - 111,794,348 (+)	NCBI

RefSeq Acc Id:

XM_063282701 ⟹ XP_063138771

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	2	111,414,008 - 111,794,007 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001419306	(Get FASTA)	NCBI Sequence Viewer
	NP_001419307	(Get FASTA)	NCBI Sequence Viewer
	NP_001419308	(Get FASTA)	NCBI Sequence Viewer
	NP_001419309	(Get FASTA)	NCBI Sequence Viewer
	XP_008759122	(Get FASTA)	NCBI Sequence Viewer
	XP_038959529	(Get FASTA)	NCBI Sequence Viewer
	XP_038959530	(Get FASTA)	NCBI Sequence Viewer
	XP_038959531	(Get FASTA)	NCBI Sequence Viewer
	XP_038959532	(Get FASTA)	NCBI Sequence Viewer
	XP_063138767	(Get FASTA)	NCBI Sequence Viewer
	XP_063138768	(Get FASTA)	NCBI Sequence Viewer
	XP_063138769	(Get FASTA)	NCBI Sequence Viewer
	XP_063138770	(Get FASTA)	NCBI Sequence Viewer
	XP_063138771	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM01099	(Get FASTA)	NCBI Sequence Viewer
	EDM01100	(Get FASTA)	NCBI Sequence Viewer
	EDM01101	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000033704
	ENSRNOP00000033704.5
	ENSRNOP00000100757
	ENSRNOP00000100757.1
	ENSRNOP00000107134
	ENSRNOP00000107134.1

RefSeq Acc Id:

XP_008759122 ⟸ XM_008760900

- Peptide Label:

isoform X2

- Sequence:

show sequence

MDSGKSRSLETTVKRVYRDLLLPKINTSKKMSTLTNSPNSLEGPPEIKKSCGEKQAETSAERVK
LTKSIKEKQSNELEKVALKRKVDSEEKLVGKKEAKVMELDSQVLTTIPLPHIPLKNIMDVEMKL
VYVDEEDVSYEFAQSYMCPGLQTTGQIATMMFPTSTRDHATLPQIDKWLQVALKDASSCYRQKK
YAVAAGQFRTALELCSKGAALGKPFEAHAEDIASVASFIETKLVTCYLRMRKPDLALNHAHRSI
VLNPAYFRNHLRQAAVFRCLERYSEAARSAMIADYMFWLCGGSEHCVSKLIKLYWQAMIEEAIT
RAEAFSVMYTPFATKIRADKIEKVKEVFTKTHPAYVECIYTDTQGFHVLPQTADWSCFPPQQYL
LTLGFKNKEDGKFLEKVSNRKLPTFTEHKTPFSPLTREDTVRHMEMVGKRILPILDFIRSTQLN
GNFHACSGVMEKLHYASLLSRLQRVKEQAQVINQAMAELATVPYLQDISQQEAELLQSLMADAM
DTLEGRKNDKERVWNTIQKVGRIEDFLYQLEDSFLKTKKLRTARRQKTKMKRLQTVQQN

hide sequence

Ensembl Acc Id:

ENSRNOP00000033704 ⟸ ENSRNOT00000035263

RefSeq Acc Id:	XP_038959531 ⟸ XM_039103603
- Peptide Label:	isoform X1
- UniProtKB:	A6IHF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038959532 ⟸ XM_039103604
- Peptide Label:	isoform X3
- UniProtKB:	A6IHF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038959529 ⟸ XM_039103601
- Peptide Label:	isoform X1
- UniProtKB:	A6IHF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038959530 ⟸ XM_039103602
- Peptide Label:	isoform X1
- UniProtKB:	A6IHF2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063138769 ⟸ XM_063282699
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063138771 ⟸ XM_063282701
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063138770 ⟸ XM_063282700
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_063138767 ⟸ XM_063282697
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063138768 ⟸ XM_063282698
- Peptide Label:	isoform X2
- UniProtKB:	A6IHF1 (UniProtKB/TrEMBL), D4A260 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000100757 ⟸ ENSRNOT00000138502

Ensembl Acc Id:

ENSRNOP00000107134 ⟸ ENSRNOT00000156980

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A260-F1-model_v2	AlphaFold	D4A260	1-571	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13691265

Promoter ID:

EPDNEW_R1786

Type:

single initiation site

Name:

Spata16_1

Description:

spermatogenesis associated 16

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	2	112,281,395 - 112,281,455	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563726	AgrOrtholog
BioCyc Gene	G2FUF-53521	BioCyc
Ensembl Genes	ENSRNOG00000024521	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000035263	ENTREZGENE
	ENSRNOT00000035263.8	UniProtKB/TrEMBL
	ENSRNOT00000138502	ENTREZGENE
	ENSRNOT00000138502.1	UniProtKB/TrEMBL
	ENSRNOT00000156980	ENTREZGENE
	ENSRNOT00000156980.1	UniProtKB/TrEMBL
Gene3D-CATH	1.25.40.10	UniProtKB/TrEMBL
InterPro	SPATA16	UniProtKB/TrEMBL
	TPR-like_helical	UniProtKB/TrEMBL
KEGG Report	rno:294932	UniProtKB/TrEMBL
NCBI Gene	294932	ENTREZGENE
PANTHER	PTHR47228	UniProtKB/TrEMBL
	SPERMATOGENESIS-ASSOCIATED PROTEIN 16	UniProtKB/TrEMBL
Pfam	NYD-SP12_N	UniProtKB/TrEMBL
PhenoGen	Spata16	PhenoGen
RatGTEx	ENSRNOG00000024521	RatGTEx
Superfamily-SCOP	SSF48452	UniProtKB/TrEMBL
UniProt	A0ABK0L805_RAT	UniProtKB/TrEMBL
	A0ABK0L9M4_RAT	UniProtKB/TrEMBL
	A6IHF1	ENTREZGENE, UniProtKB/TrEMBL
	A6IHF2	ENTREZGENE, UniProtKB/TrEMBL
	D4A260	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Spata16	spermatogenesis associated 16	RGD1563726_predicted	similar to Nyd-sp12 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1563726_predicted	similar to Nyd-sp12 protein (predicted)	LOC294932	similar to Nyd-sp12 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC294932	similar to Nyd-sp12 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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