Rps2-ps17 (ribosomal protein S2, pseudogene 17) - Rat Genome Database

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Gene: Rps2-ps17 (ribosomal protein S2, pseudogene 17) Rattus norvegicus
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Symbol: Rps2-ps17
Name: ribosomal protein S2, pseudogene 17
RGD ID: 1563656
Description: Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in ribosome. Predicted to be part of small ribosomal subunit.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC302961; RGD1563656; similar to 40S ribosomal protein S2; small ribosomal subunit protein uS5-like
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81013,081,207 - 13,083,420 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1013,082,645 - 13,088,290 (-)EnsemblGRCr8
mRatBN7.21012,577,882 - 12,578,860 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1012,577,866 - 12,584,044 (-)EnsemblmRatBN7.2
Rnor_6.01012,871,003 - 12,871,735 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.01012,692,295 - 12,693,023 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41012,807,764 - 12,808,689 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1012,274,579 - 12,275,311 (-)NCBICelera
Cytogenetic Map10q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IBA,IEA)

Cellular Component

Molecular Function

References

Genomics

Variants

.
Variants in Rps2-ps17
31 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2313095Bss62Bone structure and strength QTL 621.50.0001tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
631660Hcar1Hepatocarcinoma resistance QTL 13.40.0001liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)10666111835509383Rat
8662860Vetf10Vascular elastic tissue fragility QTL 10artery integrity trait (VT:0010639)number of ruptures of the internal elastic lamina of the abdominal aorta and iliac arteries (CMO:0002562)10666092373950353Rat
2313066Bss63Bone structure and strength QTL 631.40.0001tibia strength trait (VT:1000284)bone polar moment of inertia (CMO:0001558)10589381150893811Rat
631554Bp133Blood pressure QTL 1330.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)10125055464349221Rat
2313064Bmd71Bone mineral density QTL 710.90.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)10589381150893811Rat
1578761Stresp21Stress response QTL 213.3thymus mass (VT:0004954)thymus wet weight (CMO:0000855)10687714251877142Rat
2293680Bss40Bone structure and strength QTL 405.660.0001femur strength trait (VT:0010010)femur total energy absorbed before break (CMO:0001677)10135730538Rat
7387235Uae41Urinary albumin excretion QTL 415.260.1874urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)10130004247Rat
2313104Bss61Bone structure and strength QTL 610.90.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)10589381150893811Rat
61427Cia16Collagen induced arthritis QTL 163.2joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)10686461896620484Rat
10401803Kidm50Kidney mass QTL 50kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)1092219745922197Rat
2317754Glom25Glomerulus QTL 253.5urine protein amount (VT:0005160)urine protein level (CMO:0000591)10210370847103708Rat
2313081Bss64Bone structure and strength QTL 641.30.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)10589381150893811Rat
631828Alc5Alcohol consumption QTL 52.4consumption behavior trait (VT:0002069)ethanol drink intake rate (CMO:0001407)10117749933Rat
634327Hc4Hypercalciuria QTL 42.4urine calcium amount (VT:0002985)urine calcium excretion rate (CMO:0000763)10138832698Rat


Expression

RNA-SEQ Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_063270081 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000010 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000105958   ⟹   ENSRNOP00000081129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1013,082,645 - 13,088,290 (-)Ensembl
mRatBN7.2 Ensembl1012,577,866 - 12,584,044 (-)Ensembl
RefSeq Acc Id: XM_063270081   ⟹   XP_063126151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81013,081,207 - 13,083,420 (-)NCBI
Protein Sequences
Protein RefSeqs XP_063126151 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000081129.2
RefSeq Acc Id: XP_063126151   ⟸   XM_063270081
- UniProtKB: A0A8I5ZSA5 (UniProtKB/TrEMBL),   A6HCW1 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000081129   ⟸   ENSRNOT00000105958
Protein Domains
S5 DRBM

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-25939 BioCyc
Ensembl Genes ENSRNOG00000063807 Ensembl, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000105958.2 UniProtKB/TrEMBL
Gene3D-CATH 3.30.160.20 UniProtKB/TrEMBL
  3.30.230.10 UniProtKB/TrEMBL
InterPro Ribosomal_Su5_D2-typ_SF UniProtKB/TrEMBL
  Ribosomal_uS5 UniProtKB/TrEMBL
  Ribosomal_uS5_C UniProtKB/TrEMBL
  Ribosomal_uS5_euk/arc UniProtKB/TrEMBL
  Ribosomal_uS5_N UniProtKB/TrEMBL
  Ribosomal_uS5_N_CS UniProtKB/TrEMBL
  Ribsml_uS5_D2-typ_fold_subgr UniProtKB/TrEMBL
NCBI Gene 302961 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S2 UniProtKB/TrEMBL
  RIBOSOMAL S SUBUNIT UniProtKB/TrEMBL
  SMALL RIBOSOMAL SUBUNIT PROTEIN US5 UniProtKB/TrEMBL
Pfam Ribosomal_S5 UniProtKB/TrEMBL
  Ribosomal_S5_C UniProtKB/TrEMBL
PhenoGen Rps2-ps17 PhenoGen
PROSITE RIBOSOMAL_S5 UniProtKB/TrEMBL
  S5_DSRBD UniProtKB/TrEMBL
RatGTEx ENSRNOG00000063807 RatGTEx
Superfamily-SCOP dsRNA-binding domain-like UniProtKB/TrEMBL
  Ribosomal protein S5 domain 2-like UniProtKB/TrEMBL
UniProt A0A8I5ZSA5 ENTREZGENE, UniProtKB/TrEMBL
  A6HCW1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-06-10 Rps2-ps17  ribosomal protein S2, pseudogene 17  RGD1563656  similar to 40S ribosomal protein S2  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1563656  similar to 40S ribosomal protein S2   RGD1563656_predicted  similar to 40S ribosomal protein S2 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563656_predicted  similar to 40S ribosomal protein S2 (predicted)  LOC302961  similar to 40S ribosomal protein S2  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC302961  similar to 40S ribosomal protein S2      Symbol and Name status set to provisional 70820 PROVISIONAL