Sh3bgr (SH3 domain binding glutamate-rich protein) - Rat Genome Database

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Gene: Sh3bgr (SH3 domain binding glutamate-rich protein) Rattus norvegicus
Analyze
Symbol: Sh3bgr
Name: SH3 domain binding glutamate-rich protein
RGD ID: 1563599
Description: Predicted to enable SH3 domain binding activity. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human SH3BGR (SH3 domain binding glutamate rich protein); INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5,5'-tetrabromobisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC102553613; LOC498066; RGD1563599; SH3 domain binding glutamic acid-rich protein; SH3 domain-binding glutamic acid-rich protein; SH3 domain-binding glutamic acid-rich protein-like; SH3-binding domain glutamic acid-rich protein; similar to putative SH3BGR protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Naked Mole-Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81148,973,033 - 48,997,328 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1148,973,097 - 48,997,326 (+)EnsemblGRCr8
mRatBN7.21135,503,663 - 35,527,853 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,503,725 - 35,527,853 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1144,160,745 - 44,184,889 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01136,832,126 - 36,856,270 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01135,978,116 - 36,002,181 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01136,555,354 - 36,579,537 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1136,555,416 - 36,579,535 (+)Ensemblrn6Rnor6.0
Rnor_5.01140,086,045 - 40,110,164 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41136,511,326 - 36,535,444 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1132,944,120 - 32,968,430 (-)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
1-naphthyl isothiocyanate  (EXP)
17beta-estradiol  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,4-dibromophenyl 2,4,5-tribromophenyl ether  (ISO)
3,3',5,5'-tetrabromobisphenol A  (EXP)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
acrylamide  (EXP,ISO)
aflatoxin B1  (ISO)
aldehydo-D-glucose  (ISO)
all-trans-retinoic acid  (ISO)
alpha-Zearalanol  (EXP)
avobenzone  (ISO)
benzo[a]pyrene  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
cadmium dichloride  (EXP,ISO)
cantharidin  (ISO)
carbamazepine  (ISO)
carbon nanotube  (ISO)
chlordecone  (ISO)
chrysene  (ISO)
cisplatin  (EXP)
cobalt dichloride  (EXP)
copper atom  (ISO)
copper(0)  (ISO)
cyclosporin A  (ISO)
D-glucose  (ISO)
dibutyl phthalate  (EXP,ISO)
diuron  (EXP)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethyl methanesulfonate  (ISO)
gentamycin  (EXP)
glucose  (ISO)
hydroquinone  (ISO)
lead(0)  (ISO)
methoxychlor  (EXP)
methyl methanesulfonate  (ISO)
methylseleninic acid  (ISO)
mono(2-ethylhexyl) phthalate  (ISO)
monobenzyl phthalate  (ISO)
Monobutylphthalate  (ISO)
monoethyl phthalate  (ISO)
nickel atom  (ISO)
octadecanoic acid  (ISO)
okadaic acid  (ISO)
ozone  (EXP)
perfluorooctane-1-sulfonic acid  (EXP)
perfluorooctanoic acid  (EXP)
pirinixic acid  (ISO)
quercetin  (ISO)
rotenone  (EXP)
S-nitrosoglutathione  (ISO)
SB 431542  (ISO)
sunitinib  (ISO)
Tetrachlorobisphenol A  (ISO)
thalidomide  (ISO)
titanium dioxide  (ISO)
toluene  (EXP)
triclosan  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vorinostat  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
nucleus  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:16780588  


Genomics

Comparative Map Data
Sh3bgr
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81148,973,033 - 48,997,328 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1148,973,097 - 48,997,326 (+)EnsemblGRCr8
mRatBN7.21135,503,663 - 35,527,853 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,503,725 - 35,527,853 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1144,160,745 - 44,184,889 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01136,832,126 - 36,856,270 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01135,978,116 - 36,002,181 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01136,555,354 - 36,579,537 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1136,555,416 - 36,579,535 (+)Ensemblrn6Rnor6.0
Rnor_5.01140,086,045 - 40,110,164 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41136,511,326 - 36,535,444 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1132,944,120 - 32,968,430 (-)NCBICelera
Cytogenetic Map11q11NCBI
SH3BGR
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382139,445,865 - 39,515,506 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2139,445,855 - 39,515,506 (+)Ensemblhg38GRCh38
GRCh372140,817,791 - 40,887,433 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362139,739,667 - 39,809,303 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342139,745,649 - 39,809,302NCBI
Celera2126,015,495 - 26,085,127 (+)NCBICelera
Cytogenetic Map21q22.2NCBI
HuRef2126,286,675 - 26,357,208 (+)NCBIHuRef
CHM1_12140,378,935 - 40,448,548 (+)NCBICHM1_1
T2T-CHM13v2.02137,830,488 - 37,900,126 (+)NCBIT2T-CHM13v2.0
Sh3bgr
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391696,001,670 - 96,030,133 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1696,001,650 - 96,030,135 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381696,200,470 - 96,228,933 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1696,200,450 - 96,228,935 (+)Ensemblmm10GRCm38
MGSCv371696,422,077 - 96,450,540 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361696,305,614 - 96,329,470 (+)NCBIMGSCv36mm8
Celera1697,274,391 - 97,301,969 (+)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1656.86NCBI
Sh3bgr
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540738,225,718 - 38,258,125 (+)Ensembl
ChiLan1.0NW_00495540738,225,827 - 38,265,792 (+)NCBIChiLan1.0ChiLan1.0
SH3BGR
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22235,543,418 - 35,613,655 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12130,399,318 - 30,469,759 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02125,798,888 - 25,869,102 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12139,142,685 - 39,205,414 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2139,142,685 - 39,205,402 (+)EnsemblpanPan2panpan1.1
LOC119867070
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3133,495,810 - 33,551,676 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03133,729,949 - 33,785,714 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3133,729,957 - 33,785,659 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13133,601,873 - 33,657,248 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03133,606,662 - 33,662,604 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03134,098,099 - 34,153,975 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
LOC101973230
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497133,628,715 - 33,767,203 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365003,703,846 - 3,751,278 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0 EnsemblNW_0049365003,814,904 - 3,831,935 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365003,700,620 - 3,751,532 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
SH3BGR
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13203,046,553 - 203,108,634 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113203,046,575 - 203,108,638 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213213,286,145 - 213,348,193 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sh3bgr
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474524,538,069 - 24,574,036 (-)NCBIHetGla 1.0HetGla 1.0hetGla2

Variants

.
Variants in Sh3bgr
157 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:121
Count of miRNA genes:97
Interacting mature miRNAs:103
Transcripts:ENSRNOT00000064981
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)111080612555806125Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)113532319955805892Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)112995899657754989Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)112631803155806125Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111282315257823152Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat

Markers in Region
RH127121  
Rat AssemblyChrPosition (strand)SourceJBrowse
Celera1132,944,129 - 32,944,362UniSTS
Cytogenetic Map11q11UniSTS
BE111713  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21135,521,632 - 35,521,788 (+)MAPPERmRatBN7.2
Rnor_6.01136,573,317 - 36,573,472NCBIRnor6.0
Rnor_5.01140,103,944 - 40,104,099UniSTSRnor5.0
RGSC_v3.41136,529,226 - 36,529,381UniSTSRGSC3.4
RH 3.4 Map11266.5UniSTS
Cytogenetic Map11q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 150 91 90 59 91 59 6 355 191 11 126 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001127682 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443641 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443643 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001443644 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006248184 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088574 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039088575 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270698 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270699 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC142178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC159440 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214709 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ215323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216161 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216183 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216585 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ216690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ223676 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000047347   ⟹   ENSRNOP00000045652
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1148,973,097 - 48,997,323 (+)Ensembl
mRatBN7.2 Ensembl1135,503,725 - 35,527,851 (+)Ensembl
Rnor_6.0 Ensembl1139,435,291 - 39,448,503 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000064981   ⟹   ENSRNOP00000063900
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1148,973,205 - 48,997,326 (+)Ensembl
mRatBN7.2 Ensembl1135,503,725 - 35,527,851 (+)Ensembl
Rnor_6.0 Ensembl1136,555,416 - 36,579,535 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096343   ⟹   ENSRNOP00000097064
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1148,978,478 - 48,990,060 (+)Ensembl
mRatBN7.2 Ensembl1135,508,902 - 35,520,585 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000119421   ⟹   ENSRNOP00000084404
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1148,977,368 - 48,997,323 (+)Ensembl
mRatBN7.2 Ensembl1135,508,107 - 35,527,853 (+)Ensembl
RefSeq Acc Id: NM_001127682   ⟹   NP_001121154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,973,205 - 48,997,326 (+)NCBI
mRatBN7.21135,503,725 - 35,527,851 (+)NCBI
Rnor_6.01136,555,416 - 36,579,535 (+)NCBI
Rnor_5.01140,086,045 - 40,110,164 (+)NCBI
RGSC_v3.41136,511,326 - 36,535,444 (+)RGD
Celera1132,944,120 - 32,968,430 (-)RGD
Sequence:
RefSeq Acc Id: XM_006248184   ⟹   XP_006248246
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,973,033 - 48,997,328 (+)NCBI
mRatBN7.21135,503,663 - 35,527,853 (+)NCBI
Rnor_6.01136,555,354 - 36,579,537 (+)NCBI
Rnor_5.01140,086,045 - 40,110,164 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039088574   ⟹   XP_038944502
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,973,352 - 48,997,328 (+)NCBI
mRatBN7.21135,503,990 - 35,527,853 (+)NCBI
RefSeq Acc Id: XM_039088575   ⟹   XP_038944503
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,973,138 - 48,997,328 (+)NCBI
mRatBN7.21135,503,695 - 35,527,853 (+)NCBI
RefSeq Acc Id: XM_063270698   ⟹   XP_063126768
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,973,102 - 48,993,936 (+)NCBI
RefSeq Acc Id: XM_063270699   ⟹   XP_063126769
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,973,481 - 48,997,328 (+)NCBI
RefSeq Acc Id: NP_001121154   ⟸   NM_001127682
- Sequence:
RefSeq Acc Id: XP_006248246   ⟸   XM_006248184
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZZ80 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000063900   ⟸   ENSRNOT00000064981
RefSeq Acc Id: XP_038944503   ⟸   XM_039088575
- Peptide Label: isoform X3
- UniProtKB: A0A8I5ZZ80 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038944502   ⟸   XM_039088574
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZZ80 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000045652   ⟸   ENSRNOT00000047347
Ensembl Acc Id: ENSRNOP00000097064   ⟸   ENSRNOT00000096343
Ensembl Acc Id: ENSRNOP00000084404   ⟸   ENSRNOT00000119421
RefSeq Acc Id: XP_063126768   ⟸   XM_063270698
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZZ80 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126769   ⟸   XM_063270699
- Peptide Label: isoform X4

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4AAC3-F1-model_v2 AlphaFold D4AAC3 1-107 view protein structure
AF-D3ZU20-F1-model_v2 AlphaFold D3ZU20 1-186 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563599 AgrOrtholog
BioCyc Gene G2FUF-21710 BioCyc
Ensembl Genes ENSRNOG00000028238 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
  ENSRNOG00000046133 Ensembl
Ensembl Transcript ENSRNOT00000047347.7 UniProtKB/TrEMBL
  ENSRNOT00000064981.5 UniProtKB/TrEMBL
  ENSRNOT00000096343.2 UniProtKB/TrEMBL
  ENSRNOT00000119421 ENTREZGENE
  ENSRNOT00000119421.2 UniProtKB/TrEMBL
Gene3D-CATH Glutaredoxin UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:9035279 IMAGE-MGC_LOAD
InterPro Glut_rich_SH3-bd UniProtKB/TrEMBL
  SH3BGR UniProtKB/TrEMBL
  Thioredoxin-like_sf UniProtKB/TrEMBL
KEGG Report rno:498066 UniProtKB/TrEMBL
MGC_CLONE MGC:188790 IMAGE-MGC_LOAD
NCBI Gene 498066 ENTREZGENE
PANTHER SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH PROTEIN UniProtKB/TrEMBL
  SH3 DOMAIN-BINDING GLUTAMIC ACID-RICH-LIKE PROTEIN UniProtKB/TrEMBL
Pfam SH3BGR UniProtKB/TrEMBL
PhenoGen Sh3bgr PhenoGen
RatGTEx ENSRNOG00000028238 RatGTEx
  ENSRNOG00000046133 RatGTEx
Superfamily-SCOP Thiordxn-like_fd UniProtKB/TrEMBL
UniProt A0A8I5ZZ80 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AVY1_RAT UniProtKB/TrEMBL
  A6KPR6_RAT UniProtKB/TrEMBL
  B0K040_RAT UniProtKB/TrEMBL
  D3ZU20_RAT UniProtKB/TrEMBL
  D4AAC3_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-03-09 Sh3bgr  SH3 domain binding glutamate-rich protein  LOC102553613  SH3 domain-binding glutamic acid-rich protein-like  Data merged from RGD:7616949 737654 PROVISIONAL
2014-03-13 Sh3bgr  SH3 domain binding glutamate-rich protein  Sh3bgr  SH3 domain binding glutamic acid-rich protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2013-12-18 LOC102553613  SH3 domain-binding glutamic acid-rich protein-like      Symbol and Name status set to provisional 70820 PROVISIONAL
2008-11-04 Sh3bgr  SH3 domain binding glutamic acid-rich protein  Sh3bgr  SH3-binding domain glutamic acid-rich protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Sh3bgr  SH3-binding domain glutamic acid-rich protein  RGD1563599_predicted  similar to putative SH3BGR protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563599_predicted  similar to putative SH3BGR protein (predicted)  LOC498066  similar to putative SH3BGR protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498066  similar to putative SH3BGR protein      Symbol and Name status set to provisional 70820 PROVISIONAL