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Gene: Cped1 (cadherin-like and PC-esterase domain containing 1) Rattus norvegicus

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Symbol:

Cped1

Name:

cadherin-like and PC-esterase domain containing 1

RGD ID:

1563491

Description:

Predicted to be located in endoplasmic reticulum. Orthologous to human CPED1 (cadherin like and PC-esterase domain containing 1); INTERACTS WITH (+)-schisandrin B; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

cadherin-like and PC-esterase domain-containing protein 1; hypothetical protein LOC500046; LOC500046; MGC112827; similar to hypothetical protein FLJ21986; uncharacterized protein LOC500046

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	51,482,497 - 51,755,440 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	51,482,545 - 51,755,442 (+)	Ensembl				GRCr8
mRatBN7.2	4	50,516,712 - 50,789,651 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	50,516,819 - 50,788,674 (+)	Ensembl				mRatBN7.2
Rnor_6.0	4	49,055,988 - 49,333,729 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	49,056,010 - 49,333,304 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	48,850,970 - 49,127,847 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	48,295,056 - 48,568,314 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	45,723,759 - 45,996,332 (+)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Creutzfeldt-Jakob disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-schisandrin B (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

3,3',4,4',5-pentachlorobiphenyl (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dicrotophos (ISO)

diuron (EXP)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

epoxiconazole (ISO)

ethyl methanesulfonate (ISO)

formaldehyde (ISO)

fulvestrant (ISO)

indometacin (ISO)

lipopolysaccharide (ISO)

methimazole (EXP)

methyl methanesulfonate (ISO)

nickel atom (ISO)

O-methyleugenol (ISO)

okadaic acid (ISO)

oxaliplatin (EXP)

ozone (ISO)

panobinostat (ISO)

paracetamol (EXP,ISO)

paraquat (EXP)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phenobarbital (EXP,ISO)

pirinixic acid (ISO)

potassium chromate (ISO)

progesterone (ISO)

quercetin (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

S-nitrosoglutathione (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

sulfadimethoxine (EXP)

sulforaphane (ISO)

tetrachloromethane (EXP)

thioacetamide (EXP)

titanium dioxide (EXP,ISO)

topotecan (EXP)

trichostatin A (ISO)

triphenyl phosphate (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

endoplasmic reticulum (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Cped1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	4	51,482,497 - 51,755,440 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	4	51,482,545 - 51,755,442 (+)	Ensembl				GRCr8
mRatBN7.2	4	50,516,712 - 50,789,651 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	4	50,516,819 - 50,788,674 (+)	Ensembl				mRatBN7.2
Rnor_6.0	4	49,055,988 - 49,333,729 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	4	49,056,010 - 49,333,304 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	4	48,850,970 - 49,127,847 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	4	48,295,056 - 48,568,314 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	4	45,723,759 - 45,996,332 (+)	NCBI		Celera
Cytogenetic Map	4	q22	NCBI

CPED1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	120,988,711 - 121,297,442 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	120,988,697 - 121,297,980 (+)	Ensembl			hg38	GRCh38
GRCh37	7	120,628,765 - 120,937,496 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	120,415,987 - 120,724,734 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	7	115,438,272 - 115,746,685 (+)	NCBI		Celera
Cytogenetic Map	7	q31.31	NCBI
HuRef	7	114,991,976 - 115,300,687 (+)	NCBI		HuRef
CHM1_1	7	120,562,065 - 120,870,800 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	7	122,304,057 - 122,612,831 (+)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	120,023,845 - 120,332,239 (+)	NCBI

Cped1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	6	21,985,875 - 22,256,406 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	6	21,985,915 - 22,256,403 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	6	21,985,710 - 22,256,407 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	6	21,985,916 - 22,256,404 (+)	Ensembl			mm10	GRCm38
MGSCv37	6	21,935,910 - 22,205,606 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	6	21,935,911 - 22,205,607 (+)	NCBI		MGSCv36	mm8
Celera	6	22,039,934 - 22,310,126 (+)	NCBI		Celera
Cytogenetic Map	6	A3.1	NCBI
cM Map	6	8.86	NCBI

Cped1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955479	2,782,059 - 3,039,030 (+)	Ensembl
ChiLan1.0	NW_004955479	2,782,057 - 3,039,440 (+)	NCBI	ChiLan1.0	ChiLan1.0

CPED1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	157,858,549 - 158,171,351 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	9,868,929 - 10,184,088 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	112,997,867 - 113,240,213 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	125,684,738 - 125,997,449 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	125,685,423 - 125,996,060 (+)	Ensembl			panPan2	panpan1.1

CPED1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	59,104,501 - 59,364,820 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	59,104,496 - 59,364,695 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	58,521,215 - 58,782,351 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	59,140,853 - 59,401,889 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	59,140,818 - 59,400,275 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	59,234,426 - 59,495,308 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	58,857,948 - 59,120,135 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	59,236,763 - 59,498,137 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cped1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	48,061,285 - 48,311,206 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936605	3,892,718 - 4,141,659 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936605	3,892,728 - 4,142,538 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CPED1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	18	25,655,735 - 25,937,232 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	18	25,655,730 - 25,937,923 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	18	27,260,306 - 27,541,802 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CPED1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	89,813,375 - 90,121,527 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	21	89,814,332 - 90,123,795 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666042	13,440,952 - 13,757,412 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cped1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624783	14,790,540 - 15,085,263 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624783	14,791,083 - 15,085,241 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cped1
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	6	116,916,748 - 117,186,480 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cped1
2217 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	35
Count of miRNA genes:	28
Interacting mature miRNAs:	35
Transcripts:	ENSRNOT00000038566
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2302371	Stl22	Serum triglyceride level QTL 22	5.15		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	13080146	58080146	Rat
2303585	Bw86	Body weight QTL 86	4		body mass (VT:0001259)	body weight (CMO:0000012)	4	15644309	60644309	Rat
5685012	Bmd87	Bone mineral density QTL 87	5.1		tibia mineral mass (VT:1000283)	bone mineral content (CMO:0001554)	4	35113290	80113290	Rat
1358352	Srcrt3	Stress Responsive Cort QTL 3	2.29		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	39431983	123203361	Rat
61445	Strs3	Sensitivity to stroke QTL 3	3		cerebrum integrity trait (VT:0010549)	post-insult time to onset of cerebrovascular lesion (CMO:0002343)	4	41400577	86400577	Rat
6893678	Bw108	Body weight QTL 108	2.6	0.006	body mass (VT:0001259)	body weight (CMO:0000012)	4	44425024	89425024	Rat
8552906	Pigfal3	Plasma insulin-like growth factor 1 level QTL 3			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	4	11038706	56038706	Rat
10755501	Bp390	Blood pressure QTL 390	2.5		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	4	27730518	170099664	Rat
1331807	Rf31	Renal function QTL 31	2.988		urine potassium amount (VT:0010539)	urine potassium level (CMO:0000128)	4	40490442	75726188	Rat
6478766	Anxrr47	Anxiety related response QTL 47		0.09637	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	4	11038706	56038706	Rat
61330	Eau1	Experimental allergic uveoretinitis QTL 1		0.0003	uvea integrity trait (VT:0010551)	experimental autoimmune uveitis score (CMO:0001504)	4	26234499	134199155	Rat
631642	Stl2	Serum triglyceride level QTL 2	3.3		blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	5894575	57613242	Rat
6478769	Anxrr48	Anxiety related response QTL 48		0.02514	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	4	11038706	56038706	Rat
631261	Tcas3	Tongue tumor susceptibility QTL 3	6.88		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	4	11706604	92690519	Rat
10450825	Scl78	Serum cholesterol level QTL 78	3.7	0.01	blood VLDL cholesterol amount (VT:0005144)	blood low density lipoprotein cholesterol level (CMO:0000053)	4	50143926	58080146	Rat
2313401	Anxrr27	Anxiety related response QTL 27			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	4	18900697	63900697	Rat
10450821	Scl77	Serum cholesterol level QTL 77	4.1	0.01	blood VLDL cholesterol amount (VT:0005144)	blood high density lipoprotein cholesterol level (CMO:0000052)	4	50143926	58080146	Rat
8655961	Kidm43	Kidney mass QTL 43	18		kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	4	37269577	82269577	Rat
10450818	Scl76	Serum cholesterol level QTL 76	3.6	0.01	blood VLDL cholesterol amount (VT:0005144)	blood high density lipoprotein cholesterol level (CMO:0000052)	4	50143926	58080146	Rat
1354612	Foco1	Food consumption QTL 1	8.87		eating behavior trait (VT:0001431)	food intake rate (CMO:0000427)	4	45429897	149763204	Rat
6909128	Pancm4	Pancreatic morphology QTL 4	11.35		pancreas mass (VT:0010144)	pancreas wet weight (CMO:0000626)	4	27862204	126119996	Rat
8694374	Bw155	Body weight QTL 155	3.39	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	4	11038706	56038706	Rat
2303168	Bp330	Blood pressure QTL 330	4.25	0.017	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	4	5889999	148002343	Rat
61475	Aia2	Adjuvant induced arthritis QTL 2	5.8		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	4	40471453	75939996	Rat
8694439	Bw168	Body weight QTL 168	9.57	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	4	41400603	86400603	Rat
61412	Pia2	Pristane induced arthritis QTL 2	3.9		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	4	22288453	63245191	Rat
8552807	Vie4	Viral induced encephalitis QTL 4	7.3		brain integrity trait (VT:0010579)	encephalitis incidence/prevalence measurement (CMO:0002361)	4	18900697	63900697	Rat
6478724	Anxrr35	Anxiety related response QTL 35		0.00449	defecation behavior trait (VT:0010462)	defecation measurement (CMO:0000997)	4	11038706	56038706	Rat
8655906	Rf60	Renal function QTL 60	3.8		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	4	30448961	82336920	Rat
1576305	Emca6	Estrogen-induced mammary cancer QTL 6	5.8		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	4	45429709	157555683	Rat
7387227	Uae40	Urinary albumin excretion QTL 40	2.9	0.0052	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	4	18913151	63913151	Rat
6909122	Insul22	Insulin level QTL 22	4.63		blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	4	27862204	62997402	Rat
1558651	Swd3	Spike wave discharge measurement QTL 3	4.62	0.000024	brain electrophysiology trait (VT:0010557)	brain spike-and-wave discharge frequency (CMO:0001742)	4	41400577	86400577	Rat
1358203	Stl19	Serum triglyceride level QTL 19	2.8	0.002	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	4	21925151	66925151	Rat
1354660	Salc1	Saline consumption QTL 1	11.26		drinking behavior trait (VT:0001422)	saline drink intake rate (CMO:0001627)	4	45429897	149763204	Rat
70192	BpQTLcluster5	Blood pressure QTL cluster 5	4.183		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	4	1	63900697	Rat
1298082	Stresp4	Stress response QTL 4			blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	51085655	113588029	Rat
9590304	Scort17	Serum corticosterone level QTL 17	4.96	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	4	11038706	56038706	Rat
1300139	Hrtrt6	Heart rate QTL 6	2.85		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	4	40490442	117737312	Rat
11530004	Niddm71	Non-insulin dependent diabetes mellitus QTL 71		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	4	33538816	53719714	Rat
12798520	Anxrr55	Anxiety related response QTL 55	4.45	0.01	locomotor behavior trait (VT:0001392)	number of rearing movements with lid-pushing in an experimental apparatus (CMO:0002715)	4	33538597	116185060	Rat
2316958	Gluco58	Glucose level QTL 58	10		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	4	12212457	182430611	Rat

Markers in Region

D4Got28

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	51,536,476 - 51,536,655 (+)	Marker Load Pipeline
Celera	4	45,777,835 - 45,778,013	UniSTS
RH 3.4 Map	4	285.5	UniSTS
RH 3.4 Map	4	285.5	RGD
RH 2.0 Map	4	346.6	RGD
Cytogenetic Map	4	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	166	91	90	59	55	59	6	322	155	11	145	84	93	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431795	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431797	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431798	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001059531	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_002729287	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006224831	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592953	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039108608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC116288	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC100097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000004	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000038566 ⟹ ENSRNOP00000030602

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	4	50,516,819 - 50,788,674 (+)	Ensembl
Rnor_6.0 Ensembl	4	49,056,010 - 49,333,304 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000105639 ⟹ ENSRNOP00000092551

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	4	51,482,545 - 51,755,442 (+)	Ensembl
mRatBN7.2 Ensembl	4	50,516,819 - 50,788,666 (+)	Ensembl

RefSeq Acc Id:

XM_002729287 ⟹ XP_002729333

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	51,482,498 - 51,755,440 (+)	NCBI
mRatBN7.2	4	50,516,712 - 50,789,651 (+)	NCBI
Rnor_6.0	4	49,055,988 - 49,333,729 (+)	NCBI
Rnor_5.0	4	48,850,970 - 49,127,847 (+)	NCBI
RGSC_v3.4	4	48,295,056 - 48,568,314 (+)	RGD

Sequence:

show sequence

CCTAGCTTAGCTCCGCCCCGCTCGGCCTGGGTGGCAGGGATGGCCCGGGTCCTCCGGCTCTCGG
CCCTGTGTGCAGCCGGCACGCGCGTGTCTCCGCGTGTCTGCGCGTGTGTGTCCGTGCGTGAGAG
TGAGATGAAGTGGAGTCCTACGCCTGGGTGCTTCCTCCCAAGTGATTTTCATCAGCAATCCATT
AAGGGGATCATGAAAAAAAAAAATCTGGCTAAAAGGATGAAAACTGAGTAAGTACACAGAACTT
TGAACTTGAAACGGAATGAGACCAAACGCAAGCAAAACCCTGACAGTGACCACATACATCCAAA
CTGCTATCCCCCACCCTCTTTTTATGTTAAAAGCCGTGAACGCTAGCAGCCAAGTGGCAATTTA
AAACTGAACGAAAGGAAGCAGTTCTGCAACATAAAAGGCTGAGAGCGGGATGGCTTTAAAAGCG
GAGGGAAAATGAGAAACTGCTAGGACAACCTGGCCGGCGCCCAGCTGTGCAACAGGCTCTCCGC
GTTTAATCGGCTGCGTCTCTCAGGGCTGGTTTCTGCCTTCAGACCCGCATTACTGTGCTTTCTT
TTTGCCCCCAAAGAAGAGACAAGCTGAACTCCTGAGTTTAAGAATGTTATGGAAGTAAGACATT
GCCGGAAGGAACTCTTGGCAGCTGGGGATGCATTTGGATGATTTCTTACAACTATCTTTATTTT
GACATCTTAAAAAAAAAAAAATCAGGGCAGTCACTTCTTACTGTCCTTCATGGAAGGGCTATTG
TTAACCACCTCTGACCGCTGGGTCCTGTGAATCTTTGGCATGAACTTTCGGAAAGTTCTCCAGT
GGAGATGGGGCGAACTTGATTAGAATTGTGCAAAAGCAAGACAGATGTGTGTTTTTTTCATACT
GACAACGTGGCCAGGGGCCAAGTGAACCTGGACTGGTCATGGTCTGTCGACCTGGGTTCCTTTG
TCGCCGGCGATTTTGCCCCCGACCTTTCCTGGTGGGTTTGGTGGTGGCAATCTGTCTCTTTTAC
CAGACCCTAACACTCAGAGGGACTAAGAAGATTGCAGCGGAGGTCTCTGGGACTGTCCCACACA
CCCCCTCTCAAACTCAGGGTAGCAGATGTGAGAAAGACTACCCGCAGGACAAACGGTGCTTCCT
TCTCTCTGCCAACGCTCAAGAAATCAGGAAGATTGAAGAATTGATTGAGAGACACTTTGGCGGT
CGCAGCAGAAGGGCTGTCCTCCATAGACCTCCATCTTCCAGTGGAGCAGAGCTTCAGACACACC
AGAACCTCCTTGCTCAGCATGGCTACAGTGTGGTCACTGTGGAAGAAAGACTTGGTGGTAATCC
GGGCCTGGAGCTGCTGGACCAAGGTGGTTTGAACTCCTGGGATCTGTTCATTTGCCTGCCTTCT
AGGGAAGCTGATGGGAAACCCTGCATACCCAGGGAGCACATGTGTCGACTAAGCCTACATCAAA
GGGTGAATGTGTTACCAGAAATACAGCCTCAGCTTTGCAGAAAAGAAGGCTTGTGTGAAATAAT
CAGAAGATTTCCAGAACTGCGACTTCCAGTGAGTTCTTCTGTGTGCCTGGGTCAGGGGACACAG
TCACGGCTGAGTGTTTCCAGTCATCTCTCAAAAGCAGAGAAGCCACGTATATGGAAACCATGGA
ACTGGCAACGCGAACAGTTGAATCAGACTACACTCGTTGCTCCGCGTGAAGCAATCTTCAGAGC
AGAAGAGCTATCTGTGATTCTTAAAGCGTATGTGTTGGTGACCTCCTTAAGGCCCTTGCGTGCC
TTCATTCATTCAACTGGCACGGTATGGAGCCCCCCGAAGAAGAAACGCTTCACCGTCAAGCTGC
AGATGTTTTTTGAGACATTCCTGAGGACCAGTTCACCTCTGCAAGCCCTGGACAGCCTGAAGGA
AGCCATTAGCAAGCTGCTGTTGGTAGCTGAGGTGTTTAGTGACTCATCTACTTTGGGACCAAAA
ACCTTTCATAGATGTAGGCACTGCTTTCAGCTTATGACCTTTGACATTGGTTATGGAGATCCGG
GGAATCCTGTGGTGCTGCAGGTACACGAGCGTTTAAAATTTCACGATGATGAGAATCTCCACGT
AGAGGACCAAAATACGGAAAGAATCCTCTTAAGGGATACTTTCGACTTCCTCTTCTCCAATGCG
TCTTCCCTTCCCGTGGTTTCTGAGATGCTGCAGAGGCCTGAGAGGGCAGGTGCATCTGTGGATG
GAAAGTATCAGAAGGAGTTAAATCAGTGCCTGTCGTTAGAGGAAATTCACTCAATTAGGACTTT
TGTAAAGGAACTTGGGAATCTGGGCCAATTCCAACTGCTCTTCCCATCCACTGTTCCTGGGATT
CAGTCTCTGATGGGTGAATTTTATGATACGGCAACTCCTGGCTCAGTCCTGTCCCACTACTGGT
CTCTTTTAAATGTATTTGAACAATTTTGGCTCGTGAATAAAAAGGCACAGCTACATTCACTGGA
ATGGAATTCTTCAACAAGGAACCAGACCGTTGAGAAACCACACAGGTCATTGGAAGCCATCCAA
AGTAAAAAAGCTGCAGTTCCACAAGTTTTGTATGAAGATAAAGATAAACATTGCAGCGATGAGG
AAGAGGCACAGTGCCAGATCAAGAAGATTGTCACCTATCCCCGTTTAGAACTGAGTCCCGAGTT
TAATGCGAAGATCAAAGACTATTACTGCGAAGTGCCCTTTGATGTGCTAACCGTGAGGATCAGA
GCCGAGACTTCCAAGTGTCAGTGCAAGGTGCACCTGCAGGAGCAGACAGGGCCAAGCTTTGCCA
ACTATCCTCTGGGATTAGGAATGAACAGAATCTCCATGCTTGTGGTAGATGAATCTCGAGCAGA
GGGTGACGCCCTAACCACGTATAAACTCACCATCTACAGAGAAGACCGCCCGAGTCTGCCCTTC
TTCGAGGACTTCACAGCGTGCGGCTTTGTACAAGATTGCGATTTATTGATTCACCCAGAAGAAA
CCTGTGGATTGCAGCCTATTTCTGCAGACTACATTGAAACCATTTCACAGCCTGAAATACAGAG
TTGTCAATCTGGGGACACTAAAGGCCAGTGGATTGTGCCTTGCCTTACTTGTTCAGACAACAGG
ACCTGTGACTGGAGAGAAATAACCTGGCAACCACACAACTGCCAACATGACATCCTAAGCAAGC
CAGAGCTTCAGCAGTGCCTGCAAGGAAGGAAGATTCTTTTCATAGGAGATTCCACCAACAGGGG
GATGATGTATTATCTAATTGAAAGACTGAATGAAACACTTCAGGAGTGGCAGAAGCTGCATGGC
ACTAAACTCTACCCCAGTGTCAATGGCGGGAAGACGCTGATCAGTTACTCCTACTATCCCCAGT
TCTGGATAAGCCCTTCATTGAGACCAGCATTTGAGAAAGCACTTGAACGTCTCTTGCAAAGATC
ACAGCCCCTAGAGAATACTGACCAGACGGTATTGGTTGTCGGTGGTGTTCAGTGGCTTAATTCC
AATCACCTGCAAATTATTCACAAGGTTTTAAAGAGGGAAAATTTGCAGAATATCCTAGTGATCA
TCAAAACTTTGGGGATTGGATTCCACCTGCCAGTGGATGGAGTGCATTTCTTAACACAGAGTGA
AGTACGGAACTTATATAAAGAAAATCTGAGTATTCTGGAAGCTGCCAAAAAATATGGCTATGAA
GTAGTAGACACATTCACTATCACGATGGGACGGCACAAAGAATTTCTGCAGGGCAATTGTGGAT
GCCATTTTCATGAGGTAGTGAAGTCTAAGTTCGCCAGACCGCACCACGTGATCAAGATGAAAAG
ATCCAAGAACCATATTGTGGGGAAATACTTCAGCAGTCAAAGCAAACTGAAGCAACACAATTCT
GCCCCAAATGTTCACTCACCATATCATGTCAGAGGCCCGATAAACCAGGTTTGTGCTGAAATCC
TGCTCAGCAGGATGTGTGTGAGTCAGAGGTCTGCGCGGGTTCCCTGAAGGAGAACCCAGTTCAC
AGTTAGACATAACCTTTCACCTGGACCTGAGAGCCAAACGTGCCTGACACATACTTTGCAATGA
CGACCCTCACCAGTGCAAGCATGCACAGCAAAGCACACAGCCCACAGACACGCAATGACACACT
TTTCTGATGTCTATACACACTCAGAAGTGACCTTGAGCATCCGTTAGTTTCAGGTCGAAGCACA
GAGCTATACAGAGATCACTTGAACTGTGATCACAAAGGACGACCGTGTGGACCAGGTATTGGAC
TGCAATGATAAAAGGAAAGACAGAAATGCAACCGCGTGGGGATAGGGCGATGCTGGTTCTGTGC
TCTCCTCGACATAGGAGGAGAAAAAATGTTTTTCTACCAATGAAAAAACGTCGAAGAAGCAAAT
ACATTCCACATGTAGGGAAGAATAACACCGAAGTTCTCTACCGGGAGAAGCGGGGTATTTACGG
TGATTTGAACTTTGTGGATCCAATGCTTATGAAAAACACTTCTTATGCTTTTAAAATGGTACGA
TGGAAGGGAGAGAACAGGAGTGATTCTCTACAGTGGAATTCAGAGATTCTCCGAGAGCAATAAG
AAGCAACGTTATATTCAACTCTGAGTTCCTGTGTGTTCCTCAAAGATCCCCCCACCCGTCTGTG
AGCTTAGATGGGAAGCACAGTCTAAGTGGAGGATGTGCATACTTTTAAAGTGTGGTACAAAATA
AAGTTCCCCGCCTGTTATGCTGTATATTTGTGGATGCTGTTACTAAGGAAGCCTTTACTGCCTT
TACCTGCCCCTATAGACCTATTTATTTTAAGACAATGGTTACATTTCAGATATTGTGCAAAGGA
TTGCAGATTCTCAAATGTAAAAGCATGAAGCCTTTCCTATATATCCACAAATAGTACTATTTGA
CTAGTATTATATTCTTCTTTGAACAAACATGTTTAATTCGAATTAGAGAATAGGCACACAAGTA
TTTTGATGAGAATTGTGGTATAGGTATGGAATGTACCCAGTGCTAGCATTGAAAACTCTCTCTT
CTGTCTTCTTAGGCACAAGATGGCAGATTTCCTTATTATACAAATTCTTTGTTGGGAGATAACA
TTTCACTGCCATGGTGGGTTTTAAAGGATGATCTGGGCATGAGGAAATGAAGCTGAGTGGGATA
ACTCAGAACGTAGATGAGATTACTAAATATTCAAATACCTCAAGTTCATCGCCATAAAAAAAAA
TGAAACTATTTTGACCTATTGACCCATCAATTATTTAGAATGAATTTCCACCTCTGCCAAATGC
TCTATTTTTATATATATTTTATAAGAATATAAACATGAATTTATATTTTACTGTATTAAATTAT
ATTTAAGTACAAATATCACTTGATATAAACATTATATGCATTTAGAAATAGATTTTTTGAACAA
TGGTACTGAATTAACTTAAAAATGAAGTATTTTTCATATTTACATCTATATACAAACACCATTT
TTAGGTTTTGCAGTTATTTTTCCGTGATAGAACATGTTAGCAATCGATGTAGCTTTTCCAGTCA
ACTGTCGATGGACTGCATATTCACCCACGCTGCCCAGCTAGCGCTAAGCCTCACTCTCCTCATA
ACTGTGGAAACCCTCCGAATCAAGTTGGTCTGGCATTTTCCTCTTCACCATTGAAATAATACTA
GATTTTTGAAAGAACTGTCATGTGTTATCAATAAATGTCTAGTTTGTAATCATCTGTGTTCAGA
TGATTTTACAA

hide sequence

RefSeq Acc Id:

XM_039108607 ⟹ XP_038964535

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	51,482,498 - 51,755,440 (+)	NCBI
mRatBN7.2	4	50,516,712 - 50,789,651 (+)	NCBI

RefSeq Acc Id:

XM_039108608 ⟹ XP_038964536

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	4	51,482,497 - 51,667,473 (+)	NCBI
mRatBN7.2	4	50,516,712 - 50,691,033 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001418724	(Get FASTA)	NCBI Sequence Viewer
	NP_001418725	(Get FASTA)	NCBI Sequence Viewer
	NP_001418726	(Get FASTA)	NCBI Sequence Viewer
	NP_001418727	(Get FASTA)	NCBI Sequence Viewer
	XP_002729333	(Get FASTA)	NCBI Sequence Viewer
	XP_038964535	(Get FASTA)	NCBI Sequence Viewer
	XP_038964536	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI00098	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000092551
	ENSRNOP00000092551.1

RefSeq Acc Id:

XP_002729333 ⟸ XM_002729287

- Peptide Label:

isoform X1

- Sequence:

show sequence

MVCRPGFLCRRRFCPRPFLVGLVVAICLFYQTLTLRGTKKIAAEVSGTVPHTPSQTQGSRCEKD
YPQDKRCFLLSANAQEIRKIEELIERHFGGRSRRAVLHRPPSSSGAELQTHQNLLAQHGYSVVT
VEERLGGNPGLELLDQGGLNSWDLFICLPSREADGKPCIPREHMCRLSLHQRVNVLPEIQPQLC
RKEGLCEIIRRFPELRLPVSSSVCLGQGTQSRLSVSSHLSKAEKPRIWKPWNWQREQLNQTTLV
APREAIFRAEELSVILKAYVLVTSLRPLRAFIHSTGTVWSPPKKKRFTVKLQMFFETFLRTSSP
LQALDSLKEAISKLLLVAEVFSDSSTLGPKTFHRCRHCFQLMTFDIGYGDPGNPVVLQVHERLK
FHDDENLHVEDQNTERILLRDTFDFLFSNASSLPVVSEMLQRPERAGASVDGKYQKELNQCLSL
EEIHSIRTFVKELGNLGQFQLLFPSTVPGIQSLMGEFYDTATPGSVLSHYWSLLNVFEQFWLVN
KKAQLHSLEWNSSTRNQTVEKPHRSLEAIQSKKAAVPQVLYEDKDKHCSDEEEAQCQIKKIVTY
PRLELSPEFNAKIKDYYCEVPFDVLTVRIRAETSKCQCKVHLQEQTGPSFANYPLGLGMNRISM
LVVDESRAEGDALTTYKLTIYREDRPSLPFFEDFTACGFVQDCDLLIHPEETCGLQPISADYIE
TISQPEIQSCQSGDTKGQWIVPCLTCSDNRTCDWREITWQPHNCQHDILSKPELQQCLQGRKIL
FIGDSTNRGMMYYLIERLNETLQEWQKLHGTKLYPSVNGGKTLISYSYYPQFWISPSLRPAFEK
ALERLLQRSQPLENTDQTVLVVGGVQWLNSNHLQIIHKVLKRENLQNILVIIKTLGIGFHLPVD
GVHFLTQSEVRNLYKENLSILEAAKKYGYEVVDTFTITMGRHKEFLQGNCGCHFHEVVKSKFAR
PHHVIKMKRSKNHIVGKYFSSQSKLKQHNSAPNVHSPYHVRGPINQVCAEILLSRMCVSQRSAR
VP

hide sequence

Ensembl Acc Id:

ENSRNOP00000030602 ⟸ ENSRNOT00000038566

RefSeq Acc Id:	XP_038964535 ⟸ XM_039108607
- Peptide Label:	isoform X2
- UniProtKB:	A0A0G2QC10 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038964536 ⟸ XM_039108608
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000092551 ⟸ ENSRNOT00000105639

Protein Domains

Cadherin-like beta sandwich NXPE C-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A0G2QC10-F1-model_v2	AlphaFold	A0A0G2QC10	1-1018	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692908

Promoter ID:

EPDNEW_R3423

Type:

initiation region

Name:

Cped1_1

Description:

cadherin-like and PC-esterase domain containing 1

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	4	49,056,050 - 49,056,110	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563491	AgrOrtholog
BioCyc Gene	G2FUF-45509	BioCyc
Ensembl Genes	ENSRNOG00000021840	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000105639	ENTREZGENE
	ENSRNOT00000105639.2	UniProtKB/TrEMBL
InterPro	Cadherin-like_b_sandwich	UniProtKB/TrEMBL
	NXPE4_C	UniProtKB/TrEMBL
KEGG Report	rno:500046	UniProtKB/TrEMBL
NCBI Gene	500046	ENTREZGENE
PANTHER	CADHERIN-LIKE AND PC-ESTERASE DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
	CADHERIN-LIKE AND PC-ESTERASE DOMAIN-CONTAINING PROTEIN 1	UniProtKB/TrEMBL
Pfam	Cadherin-like	UniProtKB/TrEMBL
	NXPE4_C	UniProtKB/TrEMBL
PhenoGen	Cped1	PhenoGen
RatGTEx	ENSRNOG00000021840	RatGTEx
UniProt	A0A0G2QC10	ENTREZGENE
	A0A8I6AHU9	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-09-18	Cped1	cadherin-like and PC-esterase domain containing 1	LOC500046	similar to hypothetical protein FLJ21986	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC500046	similar to hypothetical protein FLJ21986			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD