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Gene: Firrm (FIGNL1 interacting regulator of recombination and mitosis) Rattus norvegicus

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Symbol:

Firrm

Name:

FIGNL1 interacting regulator of recombination and mitosis

RGD ID:

1563470

Description:

Predicted to enable protein kinase binding activity. Predicted to be involved in chromosome segregation; interstrand cross-link repair; and mitotic cell cycle. Predicted to be located in several cellular components, including kinetochore; midbody; and spindle midzone. Orthologous to human FIRRM (FIGNL1 interacting regulator of recombination and mitosis); INTERACTS WITH bisphenol A; (-)-epigallocatechin 3-gallate (ortholog); acrolein (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

FIGNL1-interacting regulator of recombination and mitosis; FLIP; hypothetical protein LOC498265; LOC498265; similar to hypothetical protein FLJ10706; uncharacterized protein C1orf112 homolog

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	78,835,081 - 78,879,022 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	78,834,216 - 78,879,213 (-)	Ensembl				GRCr8
mRatBN7.2	13	76,301,914 - 76,345,842 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	76,301,918 - 76,345,804 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	78,919,981 - 78,963,869 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	80,224,318 - 80,268,241 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	77,478,902 - 77,522,829 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	82,254,516 - 82,298,467 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	82,254,453 - 82,298,404 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	87,127,492 - 87,171,448 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	79,711,032 - 79,754,920 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	76,035,624 - 76,079,516 (-)	NCBI		Celera
Cytogenetic Map	13	q23	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

acrolein (ISO)

all-trans-retinoic acid (ISO)

alpha-pinene (ISO)

arsane (ISO)

arsenic atom (ISO)

azathioprine (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Butylbenzyl phthalate (ISO)

cadmium dichloride (ISO)

calcitriol (ISO)

carbamazepine (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

DDE (ISO)

deguelin (ISO)

Dibutyl phosphate (ISO)

dicrotophos (ISO)

Enterolactone (ISO)

FR900359 (ISO)

Lasiocarpine (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methyl methanesulfonate (ISO)

okadaic acid (ISO)

ozone (ISO)

perfluorooctanoic acid (ISO)

phenethyl isothiocyanate (ISO)

potassium chromate (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

testosterone (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromosome segregation (ISO)

interstrand cross-link repair (ISO,ISS)

mitotic cell cycle (ISO,ISS)

regulation of protein kinase activity (ISO)

Cellular Component

chromosome, centromeric region (IEA,ISO,ISS)

DNA repair complex (ISO)

kinetochore (IEA,ISO,ISS)

midbody (IEA,ISO,ISS)

nucleolus (ISO)

nucleoplasm (ISO)

nucleus (IEA,ISO,ISS)

spindle (IEA)

spindle midzone (ISO,ISS)

Molecular Function

protein binding (ISO)

protein kinase binding (ISO,ISS)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
3.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Firrm
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	78,835,081 - 78,879,022 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	13	78,834,216 - 78,879,213 (-)	Ensembl				GRCr8
mRatBN7.2	13	76,301,914 - 76,345,842 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	76,301,918 - 76,345,804 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	13	78,919,981 - 78,963,869 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	80,224,318 - 80,268,241 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	77,478,902 - 77,522,829 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	82,254,516 - 82,298,467 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	82,254,453 - 82,298,404 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	13	87,127,492 - 87,171,448 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	13	79,711,032 - 79,754,920 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	13	76,035,624 - 76,079,516 (-)	NCBI		Celera
Cytogenetic Map	13	q23	NCBI

FIRRM
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	169,783,837 - 169,854,080 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	169,662,007 - 169,855,456 (+)	Ensembl			hg38	GRCh38
GRCh37	1	169,763,871 - 169,823,221 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	168,031,174 - 168,088,853 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	142,874,342 - 142,932,011 (+)	NCBI		Celera
Cytogenetic Map	1	q24.2	NCBI
HuRef	1	140,986,913 - 141,044,741 (+)	NCBI		HuRef
CHM1_1	1	171,186,698 - 171,244,383 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	1	169,139,615 - 169,209,809 (+)	NCBI		T2T-CHM13v2.0

Firrm
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	163,773,409 - 163,822,377 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	163,773,562 - 163,822,365 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	163,945,993 - 163,994,809 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	163,945,993 - 163,994,796 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	165,884,137 - 165,924,912 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	165,790,681 - 165,831,456 (-)	NCBI		MGSCv36	mm8
Celera	1	166,394,487 - 166,435,214 (-)	NCBI		Celera
Cytogenetic Map	1	H2.2	NCBI
cM Map	1	71.25	NCBI

Firrm
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955462	7,476,887 - 7,518,153 (-)	Ensembl
ChiLan1.0	NW_004955462	7,477,260 - 7,518,227 (-)	NCBI	ChiLan1.0	ChiLan1.0

FIRRM
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	79,912,176 - 79,974,183 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	79,584,752 - 79,642,561 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	145,277,657 - 145,340,329 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	148,998,755 - 149,057,560 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	148,999,127 - 149,057,553 (+)	Ensembl			panPan2	panpan1.1

FIRRM
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	7	28,792,037 - 28,835,647 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	7	28,796,078 - 28,835,564 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	7	28,323,672 - 28,367,262 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	7	28,593,920 - 28,637,520 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	7	28,597,641 - 28,637,879 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	7	28,442,622 - 28,486,215 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	7	28,477,841 - 28,521,432 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	7	28,714,599 - 28,758,224 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Firrm
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	98,982,061 - 99,016,398 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936481	16,828,944 - 16,860,447 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936481	16,828,810 - 16,863,108 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

FIRRM
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	4	81,175,541 - 81,216,096 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	4	81,174,911 - 81,216,094 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	4	88,802,371 - 88,842,882 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

FIRRM
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	59,199,252 - 59,257,760 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	59,199,316 - 59,257,670 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666055	60,854,227 - 60,913,711 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Firrm
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624826	7,703,798 - 7,749,091 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624826	7,704,256 - 7,749,222 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Firrm
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	10	43,171,693 - 43,221,780 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Firrm
364 total Variants

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1298066	Bp159	Blood pressure QTL 159		0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	48639634	93639634	Rat
10755495	Bp387	Blood pressure QTL 387	3.78		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37216241	90057603	Rat
1354655	Bp241	Blood pressure QTL 241	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	38975045	103588154	Rat
8655951	Rf63	Renal function QTL 63	12.2		blood urea nitrogen amount (VT:0005265)	plasma urea nitrogen level (CMO:0000586)	13	71610804	109350286	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
8655945	Rf61	Renal function QTL 61	3.6		blood creatinine amount (VT:0005328)	creatinine clearance (CMO:0000765)	13	71610804	89333251	Rat
71119	Thym2	Thymus enlargement QTL 2	3.8		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	13	48749814	87285480	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	39968211	83286298	Rat
1331783	Bp221	Blood pressure QTL 221	3.72886		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	71610804	89333251	Rat
8655959	Pur32	Proteinuria QTL 32	8.4		urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	72984506	99745408	Rat
1300166	Kidm6	Kidney mass QTL 6	3.93		kidney mass (VT:0002707)	single kidney wet weight to body weight ratio (CMO:0000622)	13	71610804	89333251	Rat
2293687	Bss26	Bone structure and strength QTL 26	4.6	0.0001	femur morphology trait (VT:0000559)	femur cross-sectional area (CMO:0001661)	13	67635937	109350286	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	7421791	87286911	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	37087983	82087983	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	40983585	85983585	Rat
724564	Uae11	Urinary albumin excretion QTL 11	5.7		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	13	47354258	94285672	Rat
738027	Lnnr6	Liver neoplastic nodule remodeling QTL 6	3.3		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	65613454	109350286	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	21120177	109350286	Rat
7387280	Uae43	Urinary albumin excretion QTL 43	5.69	0.4174	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	68983334	109350286	Rat
738026	Lnnr5	Liver neoplastic nodule remodeling QTL 5	3.29		liver integrity trait (VT:0010547)	liver remodeling tumorous lesion number (CMO:0001461)	13	62424592	88113509	Rat
2293702	Bss34	Bone structure and strength QTL 34	4.61	0.0001	femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	13	67635937	109350286	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	39924693	84924693	Rat
1576318	Schws5	Schwannoma susceptibility QTL 5		0.0351	nervous system integrity trait (VT:0010566)	post-insult time to trigeminal nerve neurilemmoma formation (CMO:0002019)	13	64497900	109350286	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	34834947	79834947	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	11081740	103588154	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	6002008	88706694	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	39814726	84814726	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	39968211	84968211	Rat
12879475	Bp400	Blood pressure QTL 400			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	64375743	109350286	Rat
11530006	Niddm72	Non-insulin dependent diabetes mellitus QTL 72		0.001	blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	13	38286298	83286298	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	103588154	Rat
2293341	Glom15	Glomerulus QTL 15	9.1		kidney glomerulus integrity trait (VT:0010546)	kidney sclerotic glomeruli count to total glomeruli count ratio (CMO:0001269)	13	67635937	109350286	Rat

Markers in Region

RH130849

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	76,302,619 - 76,302,821 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	82,255,222 - 82,255,423	NCBI	Rnor6.0
Rnor_5.0	13	87,128,198 - 87,128,399	UniSTS	Rnor5.0
RGSC_v3.4	13	79,711,738 - 79,711,939	UniSTS	RGSC3.4
Celera	13	76,036,330 - 76,036,531	UniSTS
RH 3.4 Map	13	482.0	UniSTS
Cytogenetic Map	13	q22	UniSTS

RH135002

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	76,301,558 - 76,301,765 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	82,254,161 - 82,254,367	NCBI	Rnor6.0
Rnor_5.0	13	87,127,137 - 87,127,343	UniSTS	Rnor5.0
RGSC_v3.4	13	79,710,677 - 79,710,883	UniSTS	RGSC3.4
Celera	13	76,035,269 - 76,035,475	UniSTS
RH 3.4 Map	13	481.8	UniSTS
Cytogenetic Map	13	q22	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	89	59	6	352	189	11	141	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001017493	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001429949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_190832	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769673	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769674	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598886	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598888	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598889	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598890	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039090973	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272542	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840784	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_001840785	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056930	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010056931	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC124874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC083793	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000087487 ⟹ ENSRNOP00000068703

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	78,835,085 - 78,878,969 (-)	Ensembl
mRatBN7.2 Ensembl	13	76,301,918 - 76,345,804 (-)	Ensembl
Rnor_6.0 Ensembl	13	82,254,520 - 82,298,404 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000090120 ⟹ ENSRNOP00000074557

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	78,834,308 - 78,878,969 (-)	Ensembl
mRatBN7.2 Ensembl	13	76,301,918 - 76,345,804 (-)	Ensembl
Rnor_6.0 Ensembl	13	82,254,453 - 82,295,123 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000097617 ⟹ ENSRNOP00000094621

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	78,835,085 - 78,878,915 (-)	Ensembl
mRatBN7.2 Ensembl	13	76,301,918 - 76,345,750 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000167091 ⟹ ENSRNOP00000100868

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	13	78,834,216 - 78,879,213 (-)	Ensembl

RefSeq Acc Id:

NM_001017493 ⟹ NP_001017493

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,835,081 - 78,878,969 (-)	NCBI
mRatBN7.2	13	76,301,914 - 76,345,804 (-)	NCBI
Rnor_6.0	13	82,254,516 - 82,298,404 (-)	NCBI
Rnor_5.0	13	87,127,492 - 87,171,448 (-)	NCBI
RGSC_v3.4	13	79,711,032 - 79,754,920 (-)	RGD
Celera	13	76,035,624 - 76,079,516 (-)	RGD

Sequence:

show sequence

GTTCTAAGCTGTGGCGGGAGTCTTGCGAATTCGTTCGTCTCCGGGGGCGTAAGAATGTCGCAGA
ACGGTGCGGTGGCGACGAATGGGGTCATGCTGGAGGAACTCAGCAGCTGGCCGGAGGAGATATG
CCGTCGGGAGCTGCCTTCGGTGCTGCCCCGGCTCCTCTCTATGTATCAGTGTTCTGAAAGTTGG
ATTGAACATATCCGAATTTTGAAAATCATTGTTGAAATGTTTTTGCCTCATATGAACCACCTGA
CACTAGAAGAGACTTTGTTTTCCCAAATTTTACCAAAGACTATACAGTTGTTTGATGGCATGAT
ATGTGAATTAACTAGTGAAGCCAGAGAACTCTCCAGCCAAAATTTAGAAATCCAGATCACCATA
AGGAACATTTTACAAACAATGGTGCAGATCATAGGAAGTCTTACAGGATGTGTTCATCATGTCT
GTGCCACACAGGAATCTATCATTCTAGGAAATATCCACAGTCTTCCCTCATTCATCCTGCATAT
TATTAAAAGTACATTTGTACACTGTAAGAATAGCGAATCTGTGTATTCTGGGCGCTTACACCTG
GTGTCAGACCTTCTCCAGACTCTCTTCAAGGAGGCCTATTCTCTCCAGAAGCAGCTGATGGAAC
TGCTGGACATGGTTTGCCTGGGCCCTTCAGAAGATGAGAATAGCATTTTGACAATGGTAGAAGT
TATTCATTCGTTAATGGATATCTGCTCTGTTATCTCCAGTATGGACAAAGCATTTCATGCCAAT
ACTTGGAAGTTTATTATTAAACAGAGCCTCAAACACCAGTCAGTTATAAGGAGCCAGTTGAAAC
ACAAAGAGATCATTTCTAGCTTGTGCGAAGACATCCTTTTCTCCTTTCATTCTTGTTTACAGTT
AGCTGAGCAGACAACAGAGCCAGCTGCACAGGATAATGCTGACTACAGATTATTTCAGAAAACA
CTGAAATTGTGTCGTTTCTTTGCTAACTCCCTTTTGCACTACACTAAGGAATTTCTTCCTTTCC
TGCCTGATTCCTGCCGTACCTTGCACCAGCTTTATCTTCAGATATACAGCAAGTTTCCTCCATG
TCTGTATACTGCCAAGATTTCCAAAGTACAGCAGGAGGAAATAGCAGGCACTTTCCTTGTGGTA
CTGGACCCTCTCCTCAGTCAGCTGCTCAAATCCCAGTCTTTTGTACAGACAGTTCTGGCTAGTA
AACTCGATCTGCCCCATGAACTGCAGCTCCCACAAGTCCTCCTCCTGGTTGTTGTCGTGGATAA
GCTGCCCTCTCAGCCTGAGGATGTACAGACCCTGTGGTGCACAGAAGATATGACTAGGATGTCC
ATACTCAAAGCCATTTTCTATAATTTTGGGCAGTTTTCTGGTGAACTCTCTCTGCCTGCTCATT
TACAAGGAGTGAAGGGTAAAGGACAAGCCGAGGTACCTGTCACTCTGTATCAGCGCATTTGTGT
GCATTTGTGTACATTTGTGGCTTCTCTTCATCCCACATTGTTTCCTGAGCTGGATGCTGCTCTA
TTGAATGCTGTGCTTAGTACTAATATGAGTACCTCTTTGTTAGCGATGGATGTGTGGTGCTTCC
TTGCTCGATATGGGACTGCTGAGCTTGGTGCACACCATGTTACATTAGTGGCTCATCTGATAAA
GTCTTGCCCTGGCAGATGTGTTCAGCTCACCAACCTGTCTGTGCTGTTGAGGCGTCTCTTTTTC
TTCATGGCCCCAGCCCATCAGGTGGAATTTATCCAGAAATTTTCTCCAAGAGAAGCAGACAACT
TGCATTTGTGGCAGTATATTTCCTTCCAGGCATTACCTGCTGACCTCAGGAAGCAAGTCACATG
TGAAGTGACCGGAGTATGCACAGCACAGTGCAGGAAGTGGTTGAGCGGCAGTCATACCTTGGCA
GAACTTGACTCTCTGAACACAGCACTCTCCGTTTTGCTTACTGTATGCAATTCTGCTGGAGAAG
CTTTGGATAGTAGACAACTAACTGCGGTTACTGAAGTTGTGGGTCAGCTTTGGGCTTTTATAAA
CGTGGAACAAATAATCAGTCAACCCCATGTTCAACAGGCATTTAGCCTTTTACTTCAGCTGTTG
GCATTTTTCATCCAAACTGTAGATCTGCAGCTGATAAGTCAGGTTGTAAATGTCCTGACCTTGG
TAATTAAACTAGAGCCTCCCGACCATGTCTCTTTGGCAGTGCTGGATTTTTTATCGTCTCTGGG
CAAACTTTATATATCTCAAACTCTCCGGGACAAGGTGCTGCCCAGCTTGTCTTGCATTGTTGCT
TCCCTGATGGTCAACAGGAATTGGTTACTAGAGCAACACACTTTGGAGGCATTTACTCAGTTTG
CTGAGGGGACAAAACATGAAGAGATAGTTTCACAGTGTCTCGGTTCTGAAGAAATCAAGAACAA
AGTTGTATCCTTTTTGGAGAAGACAGAATCTGTAGGTGAAACTGAGGCTGCCACAGCGGACAAC
AGTGGGGAACAGAAGACAGACACTTTCTGGGAACCCGTTGCTAAGGTGACTTTGGAAGAGGCAA
AGGGGTCGGCCTTTCAGCCTTGCACAAAGAGAGCCCGCCAGGAGTTGCTCCTTGAAGAAGAATA
CAGATCAGCATTTCAGACTGCAACAAGGGCTTTGGAGACAACTGAGGCTTTACTCAAACATTCT
CGTGCTCCAGCCTGGCTGCTGTCGGAACTGGGGGCACTGCAAGAAAGGATTGAGAAGCTAAAAT
GCTGTGTGCTTAGAGGTTGAATAGACTGTGTATCGGACAGAACTGGGTTTGACTCTTCAAATGC
CTTACCTGGATGTTTTTGTAAATGAAATTGTGAATATAAATTATGCTTGTATATTTTCATAGCA
CATAAAAGAGCTTTTGTAAATGTGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_008769673 ⟹ XP_008767895

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,835,081 - 78,879,014 (-)	NCBI
mRatBN7.2	13	76,301,914 - 76,345,836 (-)	NCBI
Rnor_6.0	13	82,254,516 - 82,298,420 (-)	NCBI

Sequence:

show sequence

AGCCTTCTGGGAAGGCGTTCTAAGCTGTGGCGGGAGTCTTGCGAATTCGTTCGTCTCCGGGGGC
GTAAGAATGTCGCAGAACGGTGCGGTGGCGACGAATGGGGTCATGCTGGAGGAACTCAGCAGCT
GGCCGGAGGAGATATGCCGTCGGGAGCTGCCTTCGGTGCTGCCCCGGCTCCTCTCTATGTATCA
GTGTTCTGAAAGTTGGATTGAACATATCCGAATTTTGAAAATCATTGTTGAAATGTTTTTGCCT
CATATGAACCACCTGACACTAGAAGAGACTTTGTTTTCCCAAATTTTACCAAAGACTATACAGT
TGTTTGATGGCATGATATGTGAATTAACTAGTGAAGCCAGAGAACTCTCCAGCCAAAATTTAGA
AATCCAGATCACCATAAGGAACATTTTACAAACAATGGTGCAGATCATAGGAAGTCTTACAGGA
TGTGTTCATCATGTCTGTGCCACACAGGAATCTATCATTCTAGGAAATATCCACAGTCTTCCCT
CATTCATCCTGCATATTATTAAAAGTACATTTGTACACTGTAAGAATAGCGAATCTGTGTATTC
TGGGCGCTTACACCTGGTGTCAGACCTTCTCCAGACTCTCTTCAAGGAGGCCTATTCTCTCCAG
AAGCAGCTGATGGAACTGCTGGACATGGTTTGCCTGGGCCCTTCAGAAGATGAGAATAGCATTT
TGACAATGGTAGAAGTTATTCATTCGTTAATGGATATCTGCTCTGTTATCTCCAGTATGGACAA
AGCATTTCATGCCAATACTTGGAAGTTTATTATTAAACAGAGCCTCAAACACCAGTCAGTTATA
AGGAGCCAGTTGAAACACAAAGAGATCATTTCTAGCTTGTGCGAAGACATCCTTTTCTCCTTTC
ATTCTTGTTTACAGTTAGCTGAGCAGACAACAGAGCCAGCTGCACAGGATAATGCTGACTACAG
ATTATTTCAGAAAACACTGAAATTGTGTCGTTTCTTTGCTAACTCCCTTTTGCACTACACTAAG
GAATTTCTTCCTTTCCTGCCTGATTCCTGCCGTACCTTGCACCAGCTTTATCTTCAGATATACA
GCAAGTTTCCTCCATGTCTGTATACTGCCAAGATTTCCAAAGTACAGCAGGAGGAAATAGCAGG
CACTTTCCTTGTGGTACTGGACCCTCTCCTCAGTCAGCTGCTCAAATCCCAGTCTTTTGTACAG
ACAGTTCTGGCTAGTAAACTCGATCTGCCCCATGAACTGCAGCTCCCACAAGTCCTCCTCCTGG
TTGTTGTCGTGGATAAGCTGCCCTCTCAGCCTGAGGATGTACAGACCCTGTGGTGCACAGAAGA
TATGACTAGGATGTCCATACTCAAAGCCATTTTCTATAATTTTGGGCAGTTTTCTGGTGAACTC
TCTCTGCCTGCTCATTTACAAGGAGTGAAGGGTAAAGGACAAGCCGAGGTACCTGTCACTCTGT
ATCAGCGCATTTGTGTGCATTTGTGTACATTTGTGGCTTCTCTTCATCCCACATTGTTTCCTGA
GCTGGATGCTGCTCTATTGAATGCTGTGCTTAGTACTAATATGAGTACCTCTTTGTTAGCGATG
GATGTGTGGTGCTTCCTTGCTCGATATGGGACTGCTGAGCTTGGTGCACACCATGTTACATTAG
TGGCTCATCTGATAAAGTCTTGCCCTGGCAGATGTGTTCAGCTCACCAACCTGTCTGTGCTGTT
GAGGCGTCTCTTTTTCTTCATGGCCCCAGCCCATCAGGTGGAATTTATCCAGAAATTTTCTCCA
AGAGAAGCAGACAACTTGCATTTGTGGCAGTATATTTCCTTCCAGGCATTACCTGCTGACCTCA
GGAAGCAAGTCACATGTGAAGTGACCGGAGTATGCACAGCACAGTGCAGGAAGTGGTTGAGCGG
CAGTCATACCTTGGCAGAACTTGACTCTCTGAACACAGCACTCTCCGTTTTGCTTACTGTATGC
AATTCTGCTGGAGAAGCTTTGGATAGTAGACAACTAACTGCGGTTACTGAAGTTGTGGGTCAGC
TTTGGGCTTTTATAAACGTGGAACAAATAATCAGTCAACCCCATGTTCAACAGGCATTTAGCCT
TTTACTTCAGCTGTTGGCATTTTTCATCCAAACTGTAGATCTGCAGCTGATAAGTCAGGTTGTA
AATGTCCTGACCTTGGTAATTAAACTAGAGCCTCCCGACCATGTCTCTTTGGCAGTGCTGGATT
TTTTATCGTCTCTGGGCAAACTTTATATATCTCAAACTCTCCGGGACAAGGTGCTGCCCAGCTT
GTCTTGCATTGTTGCTTCCCTGATGGTCAACAGGAATTGGTTACTAGAGCAACACACTTTGGAG
GCATTTACTCAGTTTGCTGAGGGGACAAAACATGAAGAGATAGTTTCACAGTGTCTCGGTTCTG
AAGAAATCAAGAACAAAGTTGTATCCTTTTTGGAGAAGACAGAATCTGTAGGTGAAACTGAGGC
TGCCACAGCGGACAACAGTGGGGAACAGAAGACAGACACTTTCTGGGAACCCGTTGCTAAGCCT
TGCACAAAGAGAGCCCGCCAGGAGTTGCTCCTTGAAGAAGAATACAGATCAGCATTTCAGACTG
CAACAAGGGCTTTGGAGACAACTGAGGCTTTACTCAAACATTCTCGTGCTCCAGCCTGGCTGCT
GTCGGAACTGGGGGCACTGCAAGAAAGGATTGAGAAGCTAAAATGCTGTGTGCTTAGAGGTTGA
ATAGACTGTGTATCGGACAGAACTGGGTTTGACTCTTCAAATGCCTTACCTGGATGTTTTTGTA
AATGAAATTGTGAATATAAATTATGCTTGTATATTTTCATAGCACATAAAAGAGCTTTTGTAAA
TGTGAAAA

hide sequence

RefSeq Acc Id:

XM_008769674 ⟹ XP_008767896

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,835,081 - 78,879,022 (-)	NCBI
mRatBN7.2	13	76,301,914 - 76,345,842 (-)	NCBI
Rnor_6.0	13	82,254,516 - 82,298,405 (-)	NCBI

Sequence:

show sequence

CGTTCTAAGCTGTGGCGGGAGTCTTGCGAATTCGTTCGTCTCCGGGGGCGTAAGAATGTCGCAG
AACGGTGCGGTGGCGACGAATGGGGTCATGCTGGAGGAACTCAGCAGCTGGCCGGAGGAGATAT
GCCGTCGGGAGCTGCCTTCGGTGCTGCCCCGGCTCCTCTCTATGTATCAGTGTTCTGAAAGTTG
GATTGAACATATCCACTATACAGTTGTTTGATGGCATGATATGTGAATTAACTAGTGAAGCCAG
AGAACTCTCCAGCCAAAATTTAGAAATCCAGATCACCATAAGGAACATTTTACAAACAATGGTG
CAGATCATAGGAAGTCTTACAGGATGTGTTCATCATGTCTGTGCCACACAGGAATCTATCATTC
TAGGAAATATCCACAGTCTTCCCTCATTCATCCTGCATATTATTAAAAGTACATTTGTACACTG
TAAGAATAGCGAATCTGTGTATTCTGGGCGCTTACACCTGGTGTCAGACCTTCTCCAGACTCTC
TTCAAGGAGGCCTATTCTCTCCAGAAGCAGCTGATGGAACTGCTGGACATGGTTTGCCTGGGCC
CTTCAGAAGATGAGAATAGCATTTTGACAATGGTAGAAGTTATTCATTCGTTAATGGATATCTG
CTCTGTTATCTCCAGTATGGACAAAGCATTTCATGCCAATACTTGGAAGTTTATTATTAAACAG
AGCCTCAAACACCAGTCAGTTATAAGGAGCCAGTTGAAACACAAAGAGATCATTTCTAGCTTGT
GCGAAGACATCCTTTTCTCCTTTCATTCTTGTTTACAGTTAGCTGAGCAGACAACAGAGCCAGC
TGCACAGGATAATGCTGACTACAGATTATTTCAGAAAACACTGAAATTGTGTCGTTTCTTTGCT
AACTCCCTTTTGCACTACACTAAGGAATTTCTTCCTTTCCTGCCTGATTCCTGCCGTACCTTGC
ACCAGCTTTATCTTCAGATATACAGCAAGTTTCCTCCATGTCTGTATACTGCCAAGATTTCCAA
AGTACAGCAGGAGGAAATAGCAGGCACTTTCCTTGTGGTACTGGACCCTCTCCTCAGTCAGCTG
CTCAAATCCCAGTCTTTTGTACAGACAGTTCTGGCTAGTAAACTCGATCTGCCCCATGAACTGC
AGCTCCCACAAGTCCTCCTCCTGGTTGTTGTCGTGGATAAGCTGCCCTCTCAGCCTGAGGATGT
ACAGACCCTGTGGTGCACAGAAGATATGACTAGGATGTCCATACTCAAAGCCATTTTCTATAAT
TTTGGGCAGTTTTCTGGTGAACTCTCTCTGCCTGCTCATTTACAAGGAGTGAAGGGTAAAGGAC
AAGCCGAGGTACCTGTCACTCTGTATCAGCGCATTTGTGTGCATTTGTGTACATTTGTGGCTTC
TCTTCATCCCACATTGTTTCCTGAGCTGGATGCTGCTCTATTGAATGCTGTGCTTAGTACTAAT
ATGAGTACCTCTTTGTTAGCGATGGATGTGTGGTGCTTCCTTGCTCGATATGGGACTGCTGAGC
TTGGTGCACACCATGTTACATTAGTGGCTCATCTGATAAAGTCTTGCCCTGGCAGATGTGTTCA
GCTCACCAACCTGTCTGTGCTGTTGAGGCGTCTCTTTTTCTTCATGGCCCCAGCCCATCAGGTG
GAATTTATCCAGAAATTTTCTCCAAGAGAAGCAGACAACTTGCATTTGTGGCAGTATATTTCCT
TCCAGGCATTACCTGCTGACCTCAGGAAGCAAGTCACATGTGAAGTGACCGGAGTATGCACAGC
ACAGTGCAGGAAGTGGTTGAGCGGCAGTCATACCTTGGCAGAACTTGACTCTCTGAACACAGCA
CTCTCCGTTTTGCTTACTGTATGCAATTCTGCTGGAGAAGCTTTGGATAGTAGACAACTAACTG
CGGTTACTGAAGTTGTGGGTCAGCTTTGGGCTTTTATAAACGTGGAACAAATAATCAGTCAACC
CCATGTTCAACAGGCATTTAGCCTTTTACTTCAGCTGTTGGCATTTTTCATCCAAACTGTAGAT
CTGCAGCTGATAAGTCAGGTTGTAAATGTCCTGACCTTGGTAATTAAACTAGAGCCTCCCGACC
ATGTCTCTTTGGCAGTGCTGGATTTTTTATCGTCTCTGGGCAAACTTTATATATCTCAAACTCT
CCGGGACAAGGTGCTGCCCAGCTTGTCTTGCATTGTTGCTTCCCTGATGGTCAACAGGAATTGG
TTACTAGAGCAACACACTTTGGAGGCATTTACTCAGTTTGCTGAGGGGACAAAACATGAAGAGA
TAGTTTCACAGTGTCTCGGTTCTGAAGAAATCAAGAACAAAGTTGTATCCTTTTTGGAGAAGAC
AGAATCTGTAGGTGAAACTGAGGCTGCCACAGCGGACAACAGTGGGGAACAGAAGACAGACACT
TTCTGGGAACCCGTTGCTAAGGTGACTTTGGAAGAGGCAAAGGGGTCGGCCTTTCAGCCTTGCA
CAAAGAGAGCCCGCCAGGAGTTGCTCCTTGAAGAAGAATACAGATCAGCATTTCAGACTGCAAC
AAGGGCTTTGGAGACAACTGAGGCTTTACTCAAACATTCTCGTGCTCCAGCCTGGCTGCTGTCG
GAACTGGGGGCACTGCAAGAAAGGATTGAGAAGCTAAAATGCTGTGTGCTTAGAGGTTGAATAG
ACTGTGTATCGGACAGAACTGGGTTTGACTCTTCAAATGCCTTACCTGGATGTTTTTGTAAATG
AAATTGTGAATATAAATTATGCTTGTATATTTTCATAGCACATAAAAGAGCTTTTGTAAATGTG
AAAA

hide sequence

RefSeq Acc Id:

XM_017598889 ⟹ XP_017454378

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,853,580 - 78,879,014 (-)	NCBI
mRatBN7.2	13	76,320,413 - 76,345,836 (-)	NCBI
Rnor_6.0	13	82,272,998 - 82,298,467 (-)	NCBI

Sequence:

show sequence

GCGAGAGTCCTCCTCTCTATGGTTTGGTGTGGGCGGAGCTCTCTCAAAGCCTTCTGGGAAGGCG
TTCTAAGCTGTGGCGGGAGTCTTGCGAATTCGTTCGTCTCCGGGGGCGTAAGAATGTCGCAGAA
CGGTGCGGTGGCGACGAATGGGGTCATGCTGGAGGAACTCAGCAGCTGGCCGGAGGAGATATGC
CGTCGGGAGCTGCCTTCGGTGCTGCCCCGGCTCCTCTCTATGTATCAGTGTTCTGAAAGTTGGA
TTGAACATATCCGAATTTTGAAAATCATTGTTGAAATGTTTTTGCCTCATATGAACCACCTGAC
ACTAGAAGAGACTTTGTTTTCCCAAATTTTACCAAAGACTATACAGTTGTTTGATGGCATGATA
TGTGAATTAACTAGTGAAGCCAGAGAACTCTCCAGCCAAAATTTAGAAATCCAGATCACCATAA
GGAACATTTTACAAACAATGGTGCAGATCATAGGAAGTCTTACAGGATGTGTTCATCATGTCTG
TGCCACACAGGAATCTATCATTCTAGGAAATATCCACAGTCTTCCCTCATTCATCCTGCATATT
ATTAAAAGTACATTTGTACACTGTAAGAATAGCGAATCTGTGTATTCTGGGCGCTTACACCTGG
TGTCAGACCTTCTCCAGACTCTCTTCAAGGAGGCCTATTCTCTCCAGAAGCAGCTGATGGAACT
GCTGGACATGGTTTGCCTGGGCCCTTCAGAAGATGAGAATAGCATTTTGACAATGGTAGAAGTT
ATTCATTCGTTAATGGATATCTGCTCTGTTATCTCCAGTATGGACAAAGCATTTCATGCCAATA
CTTGGAAGTTTATTATTAAACAGAGCCTCAAACACCAGTCAGTTATAAGGAGCCAGTTGAAACA
CAAAGAGATCATTTCTAGCTTGTGCGAAGACATCCTTTTCTCCTTTCATTCTTGTTTACAGTTA
GCTGAGCAGACAACAGAGCCAGCTGCACAGGATAATGCTGACTACAGATTATTTCAGAAAACAC
TGAAATTGTGTCGTTTCTTTGCTAACTCCCTTTTGCACTACACTAAGGAATTTCTTCCTTTCCT
GCCTGATTCCTGCCGTACCTTGCACCAGCTTTATCTTCAGATATACAGCAAGTTTCCTCCATGT
CTGTATACTGCCAAGATTTCCAAAGTACAGCAGGAGGAAATAGCAGGCACTTTCCTTGTGGTAC
TGGACCCTCTCCTCAGTCAGCTGCTCAAATCCCAGTCTTTTGTACAGACAGTTCTGGCTAGTAA
ACTCGATCTGCCCCATGAACTGCAGCTCCCACAAGTCCTCCTCCTGGTTGTTGTCGTGGATAAG
CTGCCCTCTCAGCCTGAGGATGTACAGACCCTGTGGTGCACAGAAGATATGACTAGGATGTCCA
TACTCAAAGCCATTTTCTATAATTTTGGGCAGTTTTCTGGTGAACTCTCTCTGCCTGCTCATTT
ACAAGGAGTGAAGGGTAAAGGACAAGCCGAGGTACCTGTCACTCTGTATCAGCGCATTTGTGTG
CATTTGTGTACATTTGTGGCTTCTCTTCATCCCACATTGTTTCCTGAGCTGGATGCTGCTCTAT
TGAATGCTGTGCTTAGTACTAATATGAGTACCTCTTTGTTAGCGATGGATGTGTGGTGCTTCCT
TGCTCGGGTGTTTCTGTCTCCTTGCACTTCTGCCTAACTGGAAACTCAGTGCATTTTTTAATGT
CACAGATATGGGACTGCTGAGCTTGGTGCACACCATGTTACATTAGTGGCTCATCTGGTAAGTA
GAGTTAAATG

hide sequence

RefSeq Acc Id:

XM_039090973 ⟹ XP_038946901

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,835,081 - 78,862,057 (-)	NCBI
mRatBN7.2	13	76,301,914 - 76,331,597 (-)	NCBI

RefSeq Acc Id:

XM_063272542 ⟹ XP_063128612

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,858,035 - 78,879,014 (-)	NCBI

RefSeq Acc Id:

XR_001840784

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,842,283 - 78,879,014 (-)	NCBI
mRatBN7.2	13	76,309,116 - 76,345,836 (-)	NCBI
Rnor_6.0	13	82,261,724 - 82,298,467 (-)	NCBI

Sequence:

show sequence

GCGAGAGTCCTCCTCTCTATGGTTTGGTGTGGGCGGAGCTCTCTCAAAGCCTTCTGGGAAGGCG
TTCTAAGCTGTGGCGGGAGTCTTGCGAATTCGTTCGTCTCCGGGGGCGTAAGAATGTCGCAGAA
CGGTGCGGTGGCGACGAATGGGGTCATGCTGGAGGAACTCAGCAGCTGGCCGGAGGAGATATGC
CGTCGGGAGCTGCCTTCGGTGCTGCCCCGGCTCCTCTCTATGTATCAGTGTTCTGAAAGTTGGA
TTGAACATATCCGAATTTTGAAAATCATTGTTGAAATGTTTTTGCCTCATATGAACCACCTGAC
ACTAGAAGAGACTTTGTTTTCCCAAATTTTACCAAAGACTATACAGTTGTTTGATGGCATGATA
TGTGAATTAACTAGTGAAGCCAGAGAACTCTCCAGCCAAAATTTAGAAATCCAGATCACCATAA
GGAACATTTTACAAACAATGGTGCAGATCATAGGAAGTCTTACAGGATGTGTTCATCATGTCTG
TGCCACACAGGAATCTATCATTCTAGGAAATATCCACAGTCTTCCCTCATTCATCCTGCATATT
ATTAAAAGTACATTTGTACACTGTAAGAATAGCGAATCTGTGTATTCTGGGCGCTTACACCTGG
TGTCAGACCTTCTCCAGACTCTCTTCAAGGAGGCCTATTCTCTCCAGAAGCAGCTGATGGAACT
GCTGGACATGGTTTGCCTGGGCCCTTCAGAAGATGAGAATAGCATTTTGACAATGGTAGAAGTT
ATTCATTCGTTAATGGATATCTGCTCTGTTATCTCCAGTATGGACAAAGCATTTCATGCCAATA
CTTGGAAGTTTATTATTAAACAGAGCCTCAAACACCAGTCAGTTATAAGGAGCCAGTTGAAACA
CAAAGAGATCATTTCTAGCTTGTGCGAAGACATCCTTTTCTCCTTTCATTCTTGTTTACAGTTA
GCTGAGCAGACAACAGAGCCAGCTGCACAGGATAATGCTGACTACAGATTATTTCAGAAAACAC
TGAAATTGTGTCGTTTCTTTGCTAACTCCCTTTTGCACTACACTAAGGAATTTCTTCCTTTCCT
GCCTGATTCCTGCCGTACCTTGCACCAGCTTTATCTTCAGATATACAGCAAGTTTCCTCCATGT
CTGTATACTGCCAAGATTTCCAAAGTACAGCAGGAGGAAATAGCAGGCACTTTCCTTGTGGTAC
TGGACCCTCTCCTCAGTCAGCTGCTCAAATCCCAGTCTTTTGTACAGACAGTTCTGGCTAGTAA
ACTCGATCTGCCCCATGAACTGCAGCTCCCACAAGTCCTCCTCCTGGTTGTTGTCGTGGATAAG
CTGCCCTCTCAGCCTGAGGATGTACAGACCCTGTGGTGCACAGAAGATATGACTAGGATGTCCA
TACTCAAAGCCATTTTCTATAATTTTGGGCAGTTTTCTGGTGAACTCTCTCTGCCTGCTCATTT
ACAAGGAGTGAAGGGTAAAGGACAAGCCGAGGTACCTGTCACTCTGTATCAGCGCATTTGTGTG
CATTTGTGTACATTTGTGGCTTCTCTTCATCCCACATTGTTTCCTGAGCTGGATGCTGCTCTAT
TGAATGCTGTGCTTAGTACTAATATGAGTACCTCTTTGTTAGCGATGGATGTGTGGTGCTTCCT
TGCTCGATATGGGACTGCTGAGCTTGGTGCACACCATGTTACATTAGTGGCTCATCTGATAAAG
TCTTGCCCTGGCAGATGTGTTCAGCTCACCAACCTGTCTGTGCTGTTGAGGCGTCTCTTTTTCT
TCATGGCCCCAGCCCATCAGGTGGAATTTATCCAGAAATTTTCTCCAAGAGAAGCAGACAACTT
GCATTTGTGGCAGTATATTTCCTTCCAGGCATTACCTGCTGACCTCAGGAAGCAAGTCACATGT
GAAGTGACCGGAGTATGCACAGCACAGTGCAGGAAGTGGTTGAGCGGCAGTCATACCTTGGCAG
AACTTGACTCTCTGGTGAGAACACAGCACTCTCCGTTTTGCTTACTGTATGCAATTCTGCTGGA
GAAGCTTTGGATAGTAGACAACTAACTGCGGTTACTGAAGTTGTGGGTCAGCTTTGGGCTTTTA
TAAACGTGGAACAAATAATCAGTCAACCCCATGTTCAACAGGCATTTAGCCTTTTACTTCAGCT
GTTGGCATTTTTCATCCAAACTGTAGATCTGCAGCTGATA

hide sequence

RefSeq Acc Id:

XR_010056930

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,841,512 - 78,879,014 (-)	NCBI

RefSeq Acc Id:

XR_010056931

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	78,841,512 - 78,879,014 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001017493	(Get FASTA)	NCBI Sequence Viewer
	NP_001416878	(Get FASTA)	NCBI Sequence Viewer
	XP_008767895	(Get FASTA)	NCBI Sequence Viewer
	XP_008767896	(Get FASTA)	NCBI Sequence Viewer
	XP_017454378	(Get FASTA)	NCBI Sequence Viewer
	XP_038946901	(Get FASTA)	NCBI Sequence Viewer
	XP_063128612	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH83793	(Get FASTA)	NCBI Sequence Viewer
	EDM09369	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000068703.1
	ENSRNOP00000074557
	ENSRNOP00000094621
	ENSRNOP00000100868
GenBank Protein	Q5XI94	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001017493 ⟸ NM_001017493

- UniProtKB:

Q5XI94 (UniProtKB/Swiss-Prot), A6IDC8 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSQNGAVATNGVMLEELSSWPEEICRRELPSVLPRLLSMYQCSESWIEHIRILKIIVEMFLPHM
NHLTLEETLFSQILPKTIQLFDGMICELTSEARELSSQNLEIQITIRNILQTMVQIIGSLTGCV
HHVCATQESIILGNIHSLPSFILHIIKSTFVHCKNSESVYSGRLHLVSDLLQTLFKEAYSLQKQ
LMELLDMVCLGPSEDENSILTMVEVIHSLMDICSVISSMDKAFHANTWKFIIKQSLKHQSVIRS
QLKHKEIISSLCEDILFSFHSCLQLAEQTTEPAAQDNADYRLFQKTLKLCRFFANSLLHYTKEF
LPFLPDSCRTLHQLYLQIYSKFPPCLYTAKISKVQQEEIAGTFLVVLDPLLSQLLKSQSFVQTV
LASKLDLPHELQLPQVLLLVVVVDKLPSQPEDVQTLWCTEDMTRMSILKAIFYNFGQFSGELSL
PAHLQGVKGKGQAEVPVTLYQRICVHLCTFVASLHPTLFPELDAALLNAVLSTNMSTSLLAMDV
WCFLARYGTAELGAHHVTLVAHLIKSCPGRCVQLTNLSVLLRRLFFFMAPAHQVEFIQKFSPRE
ADNLHLWQYISFQALPADLRKQVTCEVTGVCTAQCRKWLSGSHTLAELDSLNTALSVLLTVCNS
AGEALDSRQLTAVTEVVGQLWAFINVEQIISQPHVQQAFSLLLQLLAFFIQTVDLQLISQVVNV
LTLVIKLEPPDHVSLAVLDFLSSLGKLYISQTLRDKVLPSLSCIVASLMVNRNWLLEQHTLEAF
TQFAEGTKHEEIVSQCLGSEEIKNKVVSFLEKTESVGETEAATADNSGEQKTDTFWEPVAKVTL
EEAKGSAFQPCTKRARQELLLEEEYRSAFQTATRALETTEALLKHSRAPAWLLSELGALQERIE
KLKCCVLRG

hide sequence

RefSeq Acc Id:

XP_008767895 ⟸ XM_008769673

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSQNGAVATNGVMLEELSSWPEEICRRELPSVLPRLLSMYQCSESWIEHIRILKIIVEMFLPHM
NHLTLEETLFSQILPKTIQLFDGMICELTSEARELSSQNLEIQITIRNILQTMVQIIGSLTGCV
HHVCATQESIILGNIHSLPSFILHIIKSTFVHCKNSESVYSGRLHLVSDLLQTLFKEAYSLQKQ
LMELLDMVCLGPSEDENSILTMVEVIHSLMDICSVISSMDKAFHANTWKFIIKQSLKHQSVIRS
QLKHKEIISSLCEDILFSFHSCLQLAEQTTEPAAQDNADYRLFQKTLKLCRFFANSLLHYTKEF
LPFLPDSCRTLHQLYLQIYSKFPPCLYTAKISKVQQEEIAGTFLVVLDPLLSQLLKSQSFVQTV
LASKLDLPHELQLPQVLLLVVVVDKLPSQPEDVQTLWCTEDMTRMSILKAIFYNFGQFSGELSL
PAHLQGVKGKGQAEVPVTLYQRICVHLCTFVASLHPTLFPELDAALLNAVLSTNMSTSLLAMDV
WCFLARYGTAELGAHHVTLVAHLIKSCPGRCVQLTNLSVLLRRLFFFMAPAHQVEFIQKFSPRE
ADNLHLWQYISFQALPADLRKQVTCEVTGVCTAQCRKWLSGSHTLAELDSLNTALSVLLTVCNS
AGEALDSRQLTAVTEVVGQLWAFINVEQIISQPHVQQAFSLLLQLLAFFIQTVDLQLISQVVNV
LTLVIKLEPPDHVSLAVLDFLSSLGKLYISQTLRDKVLPSLSCIVASLMVNRNWLLEQHTLEAF
TQFAEGTKHEEIVSQCLGSEEIKNKVVSFLEKTESVGETEAATADNSGEQKTDTFWEPVAKPCT
KRARQELLLEEEYRSAFQTATRALETTEALLKHSRAPAWLLSELGALQERIEKLKCCVLRG

hide sequence

RefSeq Acc Id:

XP_008767896 ⟸ XM_008769674

- Peptide Label:

isoform X2

- Sequence:

show sequence

MGSCWRNSAAGRRRYAVGSCLRCCPGSSLCISVLKVGLNISTIQLFDGMICELTSEARELSSQN
LEIQITIRNILQTMVQIIGSLTGCVHHVCATQESIILGNIHSLPSFILHIIKSTFVHCKNSESV
YSGRLHLVSDLLQTLFKEAYSLQKQLMELLDMVCLGPSEDENSILTMVEVIHSLMDICSVISSM
DKAFHANTWKFIIKQSLKHQSVIRSQLKHKEIISSLCEDILFSFHSCLQLAEQTTEPAAQDNAD
YRLFQKTLKLCRFFANSLLHYTKEFLPFLPDSCRTLHQLYLQIYSKFPPCLYTAKISKVQQEEI
AGTFLVVLDPLLSQLLKSQSFVQTVLASKLDLPHELQLPQVLLLVVVVDKLPSQPEDVQTLWCT
EDMTRMSILKAIFYNFGQFSGELSLPAHLQGVKGKGQAEVPVTLYQRICVHLCTFVASLHPTLF
PELDAALLNAVLSTNMSTSLLAMDVWCFLARYGTAELGAHHVTLVAHLIKSCPGRCVQLTNLSV
LLRRLFFFMAPAHQVEFIQKFSPREADNLHLWQYISFQALPADLRKQVTCEVTGVCTAQCRKWL
SGSHTLAELDSLNTALSVLLTVCNSAGEALDSRQLTAVTEVVGQLWAFINVEQIISQPHVQQAF
SLLLQLLAFFIQTVDLQLISQVVNVLTLVIKLEPPDHVSLAVLDFLSSLGKLYISQTLRDKVLP
SLSCIVASLMVNRNWLLEQHTLEAFTQFAEGTKHEEIVSQCLGSEEIKNKVVSFLEKTESVGET
EAATADNSGEQKTDTFWEPVAKVTLEEAKGSAFQPCTKRARQELLLEEEYRSAFQTATRALETT
EALLKHSRAPAWLLSELGALQERIEKLKCCVLRG

hide sequence

RefSeq Acc Id:

XP_017454378 ⟸ XM_017598889

- Peptide Label:

isoform X4

- Sequence:

show sequence

MVWCGRSSLKAFWEGVLSCGGSLANSFVSGGVRMSQNGAVATNGVMLEELSSWPEEICRRELPS
VLPRLLSMYQCSESWIEHIRILKIIVEMFLPHMNHLTLEETLFSQILPKTIQLFDGMICELTSE
ARELSSQNLEIQITIRNILQTMVQIIGSLTGCVHHVCATQESIILGNIHSLPSFILHIIKSTFV
HCKNSESVYSGRLHLVSDLLQTLFKEAYSLQKQLMELLDMVCLGPSEDENSILTMVEVIHSLMD
ICSVISSMDKAFHANTWKFIIKQSLKHQSVIRSQLKHKEIISSLCEDILFSFHSCLQLAEQTTE
PAAQDNADYRLFQKTLKLCRFFANSLLHYTKEFLPFLPDSCRTLHQLYLQIYSKFPPCLYTAKI
SKVQQEEIAGTFLVVLDPLLSQLLKSQSFVQTVLASKLDLPHELQLPQVLLLVVVVDKLPSQPE
DVQTLWCTEDMTRMSILKAIFYNFGQFSGELSLPAHLQGVKGKGQAEVPVTLYQRICVHLCTFV
ASLHPTLFPELDAALLNAVLSTNMSTSLLAMDVWCFLARVFLSPCTSA

hide sequence

Ensembl Acc Id:

ENSRNOP00000074557 ⟸ ENSRNOT00000090120

Ensembl Acc Id:

ENSRNOP00000068703 ⟸ ENSRNOT00000087487

RefSeq Acc Id:	XP_038946901 ⟸ XM_039090973
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000094621 ⟸ ENSRNOT00000097617

RefSeq Acc Id:	XP_063128612 ⟸ XM_063272542
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000100868 ⟸ ENSRNOT00000167091

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5XI94-F1-model_v2	AlphaFold	Q5XI94	1-905	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13698951

Promoter ID:

EPDNEW_R9476

Type:

multiple initiation site

Name:

LOC498265_1

Description:

similar to hypothetical protein FLJ10706

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	13	82,298,417 - 82,298,477	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563470	AgrOrtholog
BioCyc Gene	G2FUF-17617	BioCyc
Ensembl Genes	ENSRNOG00000059276	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000087487.2	UniProtKB/Swiss-Prot
	ENSRNOT00000090120	ENTREZGENE
	ENSRNOT00000097617	ENTREZGENE
	ENSRNOT00000167091	ENTREZGENE
IMAGE_CLONE	IMAGE:7106826	IMAGE-MGC_LOAD
InterPro	DUF4487	UniProtKB/Swiss-Prot
KEGG Report	rno:498265	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:94789	IMAGE-MGC_LOAD
NCBI Gene	498265	ENTREZGENE
PANTHER	CHROMOSOME 1 OPEN READING FRAME 112	UniProtKB/Swiss-Prot
	PTHR16071	UniProtKB/Swiss-Prot
Pfam	DUF4487	UniProtKB/Swiss-Prot
PhenoGen	Firrm	PhenoGen
RatGTEx	ENSRNOG00000059276	RatGTEx
UniProt	A0A0G2K8C8_RAT	UniProtKB/TrEMBL
	A0A8I6ALF1_RAT	UniProtKB/TrEMBL
	A0ABK0L968_RAT	UniProtKB/TrEMBL
	A6IDC8	ENTREZGENE, UniProtKB/TrEMBL
	CA112_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2023-03-23	Firrm	FIGNL1 interacting regulator of recombination and mitosis	LOC498265	similar to hypothetical protein FLJ10706	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC498265	similar to hypothetical protein FLJ10706			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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