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Gene: Ccdc73 (coiled-coil domain containing 73) Rattus norvegicus

Analyze

Symbol:

Ccdc73

Name:

coiled-coil domain containing 73

RGD ID:

1563448

Description:

Orthologous to human CCDC73 (coiled-coil domain containing 73); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; cocaine.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

coiled-coil domain-containing protein 73; LOC499848; RGD1563448; similar to hypothetical protein 4931417A20

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	111,737,771 - 111,879,588 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	111,737,730 - 111,880,105 (+)	Ensembl				GRCr8
mRatBN7.2	3	91,282,919 - 91,424,269 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	91,282,940 - 91,424,551 (+)	Ensembl				mRatBN7.2
Rnor_6.0	3	94,848,775 - 94,989,984 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	94,848,823 - 94,986,263 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	101,473,182 - 101,614,460 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	90,259,065 - 90,383,700 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	90,341,675 - 90,483,191 (+)	NCBI		Celera
Cytogenetic Map	3	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

2,3',4,4',5-Pentachlorobiphenyl (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

aflatoxin B1 (ISO)

aldehydo-D-glucose (ISO)

benzo[a]pyrene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

CGP 52608 (ISO)

cocaine (EXP)

D-glucose (ISO)

folic acid (ISO)

glucose (ISO)

methapyrilene (ISO)

methoxychlor (EXP)

paracetamol (EXP)

sodium arsenite (ISO)

trichloroethene (EXP)

valproic acid (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Ccdc73
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	111,737,771 - 111,879,588 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	3	111,737,730 - 111,880,105 (+)	Ensembl				GRCr8
mRatBN7.2	3	91,282,919 - 91,424,269 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	91,282,940 - 91,424,551 (+)	Ensembl				mRatBN7.2
Rnor_6.0	3	94,848,775 - 94,989,984 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	94,848,823 - 94,986,263 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	3	101,473,182 - 101,614,460 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	3	90,259,065 - 90,383,700 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	3	90,341,675 - 90,483,191 (+)	NCBI		Celera
Cytogenetic Map	3	q33	NCBI

CCDC73
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	11	32,602,721 - 32,830,585 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	11	32,602,721 - 32,794,662 (-)	Ensembl			hg38	GRCh38
GRCh37	11	32,624,267 - 32,816,208 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	11	32,580,202 - 32,772,763 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	11	32,770,373 - 32,962,956 (-)	NCBI		Celera
Cytogenetic Map	11	p13	NCBI
HuRef	11	32,318,299 - 32,510,262 (-)	NCBI		HuRef
CHM1_1	11	32,623,683 - 32,815,711 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	11	32,738,233 - 32,965,867 (-)	NCBI		T2T-CHM13v2.0

Ccdc73
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	104,716,669 - 104,830,082 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	104,698,150 - 104,848,249 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	2	104,886,324 - 104,999,737 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	104,867,805 - 105,017,904 (+)	Ensembl			mm10	GRCm38
MGSCv37	2	104,726,481 - 104,839,894 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	2	104,752,743 - 104,800,576 (+)	NCBI		MGSCv36	mm8
Celera	2	106,142,078 - 106,232,925 (+)	NCBI		Celera
Cytogenetic Map	2	E2	NCBI
cM Map	2	55.0	NCBI

Ccdc73
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955476	10,612,833 - 10,726,747 (-)	Ensembl
ChiLan1.0	NW_004955476	10,612,530 - 10,726,343 (-)	NCBI	ChiLan1.0	ChiLan1.0

CCDC73
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	9	34,811,583 - 35,004,104 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	11	34,815,944 - 35,008,656 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	11	32,564,669 - 32,791,684 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	11	32,451,201 - 32,608,102 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	11	32,451,201 - 32,608,102 (-)	Ensembl			panPan2	panpan1.1

CCDC73
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	18	34,806,350 - 34,944,031 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	18	34,806,198 - 34,943,810 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	18	34,420,539 - 34,558,642 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	18	35,417,267 - 35,555,578 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	18	35,417,286 - 35,554,982 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	18	34,988,317 - 35,126,439 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	18	34,568,131 - 34,706,849 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	18	35,204,140 - 35,342,476 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ccdc73
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404947	31,983,397 - 32,152,270 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936533	5,138,877 - 5,250,694 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936533	5,138,877 - 5,260,781 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CCDC73
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	2	28,081,234 - 28,259,323 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	2	28,093,647 - 28,258,094 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	2	30,598,386 - 30,748,173 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CCDC73
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	1	32,430,464 - 32,588,205 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	1	32,495,959 - 32,595,011 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666038	129,591,593 - 129,756,784 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ccdc73
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624766	21,057,761 - 21,175,037 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624766	21,057,334 - 21,169,695 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ccdc73
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	5	82,819,384 - 82,913,997 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ccdc73
1092 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	22
Count of miRNA genes:	22
Interacting mature miRNAs:	22
Transcripts:	ENSRNOT00000041362
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1358293	Bw38	Body weight QTL 38	6	0.0000031	body mass (VT:0001259)	body weight (CMO:0000012)	3	74364268	119364268	Rat
2301414	Kidm37	Kidney mass QTL 37		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	96509147	141509147	Rat
1582238	Bw68	Body weight QTL 68	3.2	0.0064	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582239	Epfw1	Epididymal fat weight QTL 1	4.5	0.0006	epididymal fat pad mass (VT:0010421)	epididymal fat pad weight to body weight ratio (CMO:0000658)	3	73592512	136118980	Rat
70216	Cm14	Cardiac mass QTL 14	2.1		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	51581665	184004958	Rat
2292591	Esta4	Estrogen-induced thymic atrophy QTL 4			thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	3	67641776	167835660	Rat
1358362	Srcrt2	Stress Responsive Cort QTL 2	2.78		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	58601291	153936591	Rat
737818	Hcar12	Hepatocarcinoma resistance QTL 12	2.6		liver integrity trait (VT:0010547)	volume of individual liver tumorous lesion (CMO:0001078)	3	49872657	138829559	Rat
1582218	Bw74	Body weight QTL 74	3.9	0.0021	body mass (VT:0001259)	body weight (CMO:0000012)	3	73592512	136118980	Rat
1582221	Kidm30	Kidney mass QTL 30	3.5	0.0008	kidney mass (VT:0002707)	both kidneys wet weight (CMO:0000085)	3	85062224	136118980	Rat
1582210	Bw71	Body weight QTL 71	3.3	0.0012	body mass (VT:0001259)	body weight (CMO:0000012)	3	85062224	136118980	Rat
7387306	Bw124	Body weight QTL 124	3.2	0.0003	body mass (VT:0001259)	body weight (CMO:0000012)	3	104545086	149545086	Rat
1300111	Rf12	Renal function QTL 12	3.78		renal blood flow trait (VT:2000006)	absolute change in renal blood flow rate (CMO:0001168)	3	81425008	141509147	Rat
724523	Tsu1	Thymus enlargement suppressive QTL 1	3.84		thymus mass (VT:0004954)	thymus weight to body weight ratio (CMO:0000612)	3	70845569	136091483	Rat
1600376	Arunc5	Aerobic running capacity QTL 5		0.21	exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	3	93829559	138829559	Rat
2302273	Gluco35	Glucose level QTL 35	5.3	0.001	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	101255536	134750886	Rat
8662816	Vetf4	Vascular elastic tissue fragility QTL 4	4		renal artery integrity trait (VT:0010642)	number of ruptures of the internal elastic lamina of the renal arteries (CMO:0002563)	3	79649560	177741895	Rat
1581503	Cm58	Cardiac mass QTL 58	2.7	0.05	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	96509147	141509147	Rat
2292613	Ept16	Estrogen-induced pituitary tumorigenesis QTL 16	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat
631649	Bp123	Blood pressure QTL 123	3.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	110225882	155225882	Rat
631841	Niddm39	Non-insulin dependent diabetes mellitus QTL 39	3.36		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	70311536	115311536	Rat
631200	Cm25	Cardiac mass QTL 25	4.8	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle wet weight (CMO:0000071)	3	81541464	126563126	Rat
12879848	Bw181	Body weght QTL 181		0.015	body mass (VT:0001259)	body weight (CMO:0000012)	3	90755164	141509147	Rat
1354597	Kidm13	Kidney mass QTL 13	2.9		kidney mass (VT:0002707)	right kidney wet weight (CMO:0000082)	3	42158111	124558371	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	1	141509147	Rat
1581546	Pur13	Proteinuria QTL 13	2.93	0.0335	urine total protein amount (VT:0000032)	urine protein excretion rate (CMO:0000759)	3	98651826	167012663	Rat
1354604	Bw36	Body weight QTL 36	2.9		body mass (VT:0001259)	body weight (CMO:0000012)	3	42158111	124558371	Rat
1331758	Bp207	Blood pressure QTL 207	2.848		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	110634702	155634702	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	5675975	141509147	Rat
1358186	Ept2	Estrogen-induced pituitary tumorigenesis QTL 2	8.3		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	3	67641995	130815812	Rat

Markers in Region

D3Rat104

Rat Assembly	Chr	Position (strand)	Source	JBrowse
GRCr8	3	111,819,439 - 111,819,663 (+)	Marker Load Pipeline
mRatBN7.2	3	91,364,602 - 91,364,826 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	94,929,484 - 94,929,707	NCBI	Rnor6.0
Rnor_5.0	3	101,553,844 - 101,554,067	UniSTS	Rnor5.0
RGSC_v3.4	3	90,320,643 - 90,320,866	UniSTS	RGSC3.4
RGSC_v3.4	3	90,320,642 - 90,320,866	RGD	RGSC3.4
Celera	3	90,423,161 - 90,423,384	UniSTS
RGSC_v3.1	3	90,216,957 - 90,217,365	RGD
SHRSP x BN Map	3	47.2698	UniSTS
SHRSP x BN Map	3	47.2698	RGD
Cytogenetic Map	3	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	10	36	66	54	53	22	76	22	6	248	135	2	53	67	82	31	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_006224541	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006234667	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592183	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592184	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592185	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017592186	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602565	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602566	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602567	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602568	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284942	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284943	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284944	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284945	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000041362 ⟹ ENSRNOP00000051496

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	111,737,808 - 111,880,105 (+)	Ensembl
mRatBN7.2 Ensembl	3	91,282,940 - 91,420,734 (+)	Ensembl
Rnor_6.0 Ensembl	3	94,848,823 - 94,986,263 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000107903 ⟹ ENSRNOP00000090283

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	111,737,730 - 111,880,105 (+)	Ensembl
mRatBN7.2 Ensembl	3	91,282,940 - 91,424,551 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000134846 ⟹ ENSRNOP00000110167

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	3	111,737,733 - 111,880,105 (+)	Ensembl

RefSeq Acc Id:

XM_006234667 ⟹ XP_006234729

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,737,771 - 111,879,588 (+)	NCBI
mRatBN7.2	3	91,282,919 - 91,424,269 (+)	NCBI
Rnor_6.0	3	94,848,775 - 94,989,984 (+)	NCBI
Rnor_5.0	3	101,473,182 - 101,614,460 (+)	NCBI

Sequence:

show sequence

CTTTGGGTAGGAAAAGATGACCCGGAAATGCTGAGTACTAAGCGGTCTTCCCTGAGGTAACTCA
ACTTCCGTGCTGAGCGCTGTTTAGGAAGTCGCTCTAACACTTCCACCCAGTGTTATTATAAAGG
TTGCCCTGGAGCTCAGGTGTCCCACCAAATCCTCATGCTGACTTCTCCGGGCCTGGTCGTCCTT
GAGTCTCCTGTCAGGTGTTCCTAGAATCTTCCGCCACGAGACGCACCACCCATCAGGTTTACTG
GAAATGAAATGAATATTAACATGGAGGACAGTTTCAACACCAAACCATCAGCATCTACCTTTAC
ACTTCAGAGTTCCTCAGAGACAATGGTTTCTATCCAGCTCCTCGATTTCAGAACAAGTTTACTT
GAAGCACTAGAAGAGCTGCGTATGAGAAGGGAAGCAGAGACTCAATATGAAGAGCAGATTGCTA
AAATTATTATGGAGACACAAGAACTGAACTGGCAAAAGGAGACTCTTCAGAATCAAAAGGAGGC
ATTAATAAAGCAACACAAAGAAGCAATGGGAGTTTTTAAAAATCAGCTGCAAATGAAGATTTAT
GCCTTGGAAGAAGAAAAGGGAAAATACAAACTTGCTACAGAAATCAAAGAAAAAGAAATAGAAG
GATTGAAGGAAACATTAAAAACACTACAGGTTTCTCAATATTCTTTACAGAAGAAAGTGAGTGA
AATGGAACAAAAGGCTCATTTACACCATCTAGCTAAAGAAGATTATCACAAGCAACTTAATGAA
ATTGAAAAATACTATGTTACAATAACAAATCAGTTTGGATTGGTGAGAGAGAATCATGTAAAGT
TAGAACAAAATGTACAAGAAGCAATACAGTTAAACAAAAGACTCTCCACCTTAAATGAAAAACA
GGAATCTGAAATTCACAGATTAAAGAAGGAACTAAAGAAAGCAGCTTCAGAGCTGATTAAGTCC
AAGGTCACTTGTCAGCATAAGATGGAGGGAGAAAGTATAGATCTAATAATTAAAGAACAAAAAT
ATGAAGAGCTTCAAGAAAGACTCAACGTGGAATTGGAATTAAATAGAAAAATTAATGAAGAGAT
TACCCACATTCAAGAAGAAAAGCAGGACATCATCATTTCTTTTCAACATATGCAGCAATTGCTT
CAGCAAGAAACTCAAGCTAATGGTGAAGTCAGTGCAGAATTGAAGGTGCTGAGAGAAAAGAATC
AGACCCTTGAAAGAGATAATGAGCTGCAAAGGGAGAAGGTAAAAGAAAATGAAGGAAAGTTCCT
TAATCTTGAGAAGGAGCATGAGAGAGCACTAGGAACTTGGAAGAAACAAGTGGAAGAACTTAGT
GGAGAAATGAATAGGATTAAAAGTGAGTTGTCATCCCTTAAGGAGACCCATGTTAAGTTGCAAG
AACATTACAACAAATTATATGAACAGAATAAAAATGAGGAATGTAAGAAGTTTCAGAATGTTCC
AGAACTAAATAATGAAAATGGTGATGAACTATCTAGCAAAAAATCAAAAAATACCATCGTACAA
AAGTACAATTCTGGTCAAGAAATATGGGGGGAAAATACAAAGAGTTGTTTGGATACTGAATACA
GGGAAAGAGAAGAAACGAGAGACCTACCTGTAGGGAAAACTGCAGAAGACTTACAGCCTCTTGA
AATAAGTGCCAAAAGTGAAATTAATACTATGATATCTCAGGAGAGAAACCAAAGTGGAATGTCC
CCACACAAAGTCCTTTGCCTAGATAAAGATGTAACTGACCAAGAACAAACCTCAAATGTTACTG
ACAGTAGAAAATCAATCCCCGGAGAAGTAAAAGACAAGCTGTGCTTGGAAAAAGCCAGTGGATG
TTCAGAGTTTAAATCATTGAACAATTTCTTTTTAGTGGTAGATGAATCACTAGAAACAGAAAAG
ATATGCCTAGAAGGAACTGAAGGATTAGGTCTTCCCCACACAGCTGTAGATGTACCTCTGGACA
CTCGGAGTAGCAAAGCATCCTTTAATGGCGTATCAAATGAGATGGCTCACAAAAGAAACCATAA
CACAGATGCTTCTGAAAGTAGCCCATTCAAACATCAATTCAAATTGCTTCCAGCAGATCTGGAA
AATGCTACAGAGAAGGAAATTACAAATCATGACCAAAACAAAGCAAGCTTAGATTCACTTCTAG
ATATAAAGCTAAATCTTGATCTGTGTAAGAAACATGGTTTACAGGATTCATGTAATGTTATGTT
AGATGTTAAGTATCAAAAAATAAAACAAATGTTAAGAGAAGAGTGTCAGTGCAGCATAGAGCCC
TGCTCTTGTTATCAGTCAGCCAGAGAGACTCCCCAGCCTGGAGCAACCGCGGCCTGTGCTGCAG
CAATCGGTCTATCCGGTCCATCTGCTAGCCCTGGTAACGATTCGACAGCCCCTAAGAAACCGGA
ACACAGTGTCAGTACCGTGCCAACAGCAGTGAAACCTTCCTCAAGCCCTGCAGAAAGAACTACA
AGAACAAATGTAAATGACATACAAAACAGTCCACTTAAGAACCATTCGGGAACTTCTGAAAGCA
GTGTGGGCATCTCAGACTTTCAGGTTAGCCCGGGGGACAGTCATGCTCCACAAGCCCAAGATTT
CAAAACTGCAGTTCCCCTGACAACTTCCACCGAAAAACAGCTTCCCAGTGACAATCAGATAACT
GAAGCTCCAGAAAGTGGTCTCTTTTCCTTGGTAGGTGTTAAGGAAAGACAATGCATGCTGATAA
GTAACAGAGAGAAGGCAGAGGCATTAGATGACATCCTGTCAGAAGAAACGTGCTGTGAAGGTCA
GCTGGGAGAAGCACATTTGTCTCATGTAACTCCATCTGCAGACTCAGTAAACACAAGTGCAAGG
TCAGCCTTTGATCTTCCTACTCCAGATAAAAAAAGAGAGGAAACTCCAGGCTACATGAAGTTTG
TAGCCCCTAGTTGTAGGCCAAAAATAAACCAAAGTCAAACCGCAGGCACTGTAACTTCCAGCAT
CCCTTCATTGCTGAAGGAGAAACCAGTAGGTGTGTCAGAAAACAGAGTGACTGCTCCAGTGACC
TTTCGTAAAAATGATGGTCTGGAGGACACTAGGAAAAACATTGGGTCAGATCCTATCAGCACTA
GCAGAGTTGCTGACACTGTGAGTAACTGGAGCATCCATCTAGATCCCAAGGGACAGCCCAGTGA
AGAGAGGAATGCAACTGCACAGACGGTTCATGAGTCTTCTTTTCCCACAGAACATGGGAAAGCA
GAGCCTTTGACTTCAACTGTGCAACAAAGCCATTCCCAGACGAGCAAGGTTACAGACACCCTGG
ATCCATTCACCTTCTGTCCTGGTAGGAAAGACTGGCAGAGCCTTGTGATGAACCAACTAACTGA
AATTGGAAAGTTACTAAGCTTAGAAAATGACAACCAGCCCAAAAGAAGAAAAGTAGAAGAAATG
CTGGATAAAGTAATTGATTAAGTACTGATAAATGCTCTCATTAGTGAGGCTGATGCAGTGGGGT
GAAGGACTGTTCATGTAAGTTTATAGCTGTCTTCACTTCAACTTTTTCTACTATAAGGAAGACC
CCATCTTGTATTTGCAGAGCTTTGCTGTCAGTACCTAGGCACCTTCAACTTGTCTTCCCTTTGT
TTATTCCCTTCAAAGCAGTTAGTTCCTTTTTTGTTATTATTATTAAATTCATTTATTCACTTTA
CATCCCAGTATCAGCCCTCCTCCTCCCAGTATCCTCTTACACAGATCCTTCCTACTCTACCTTT
CTCTTCTCCTTTTAAGAGGTGGAGCCCCCCCCTGAAGGTATCATTCCCCCTGCCCCCCCCCACT
AGTTCCTTTCTTTAAAGACT

hide sequence

RefSeq Acc Id:

XM_063284942 ⟹ XP_063141012

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,737,771 - 111,879,588 (+)	NCBI

RefSeq Acc Id:

XM_063284943 ⟹ XP_063141013

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,737,771 - 111,879,588 (+)	NCBI

RefSeq Acc Id:

XM_063284944 ⟹ XP_063141014

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,787,341 - 111,879,588 (+)	NCBI

RefSeq Acc Id:

XM_063284945 ⟹ XP_063141015

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	111,766,618 - 111,879,588 (+)	NCBI

Protein Sequences


Protein RefSeqs	XP_006234729	(Get FASTA)	NCBI Sequence Viewer
	XP_063141012	(Get FASTA)	NCBI Sequence Viewer
	XP_063141013	(Get FASTA)	NCBI Sequence Viewer
	XP_063141014	(Get FASTA)	NCBI Sequence Viewer
	XP_063141015	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL79705	(Get FASTA)	NCBI Sequence Viewer
	EDL79706	(Get FASTA)	NCBI Sequence Viewer
	EDL79707	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000051496
	ENSRNOP00000051496.6
	ENSRNOP00000090283
	ENSRNOP00000090283.1
	ENSRNOP00000110167
	ENSRNOP00000110167.1

RefSeq Acc Id:	XP_006234729 ⟸ XM_006234667
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AC57 (UniProtKB/TrEMBL), A6HNV5 (UniProtKB/TrEMBL), F1M0U1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNINMEDSFNTKPSASTFTLQSSSETMVSIQLLDFRTSLLEALEELRMRREAETQYEEQIAKII METQELNWQKETLQNQKEALIKQHKEAMGVFKNQLQMKIYALEEEKGKYKLATEIKEKEIEGLK ETLKTLQVSQYSLQKKVSEMEQKAHLHHLAKEDYHKQLNEIEKYYVTITNQFGLVRENHVKLEQ NVQEAIQLNKRLSTLNEKQESEIHRLKKELKKAASELIKSKVTCQHKMEGESIDLIIKEQKYEE LQERLNVELELNRKINEEITHIQEEKQDIIISFQHMQQLLQQETQANGEVSAELKVLREKNQTL ERDNELQREKVKENEGKFLNLEKEHERALGTWKKQVEELSGEMNRIKSELSSLKETHVKLQEHY NKLYEQNKNEECKKFQNVPELNNENGDELSSKKSKNTIVQKYNSGQEIWGENTKSCLDTEYRER EETRDLPVGKTAEDLQPLEISAKSEINTMISQERNQSGMSPHKVLCLDKDVTDQEQTSNVTDSR KSIPGEVKDKLCLEKASGCSEFKSLNNFFLVVDESLETEKICLEGTEGLGLPHTAVDVPLDTRS SKASFNGVSNEMAHKRNHNTDASESSPFKHQFKLLPADLENATEKEITNHDQNKASLDSLLDIK LNLDLCKKHGLQDSCNVMLDVKYQKIKQMLREECQCSIEPCSCYQSARETPQPGATAACAAAIG LSGPSASPGNDSTAPKKPEHSVSTVPTAVKPSSSPAERTTRTNVNDIQNSPLKNHSGTSESSVG ISDFQVSPGDSHAPQAQDFKTAVPLTTSTEKQLPSDNQITEAPESGLFSLVGVKERQCMLISNR EKAEALDDILSEETCCEGQLGEAHLSHVTPSADSVNTSARSAFDLPTPDKKREETPGYMKFVAP SCRPKINQSQTAGTVTSSIPSLLKEKPVGVSENRVTAPVTFRKNDGLEDTRKNIGSDPISTSRV ADTVSNWSIHLDPKGQPSEERNATAQTVHESSFPTEHGKAEPLTSTVQQSHSQTSKVTDTLDPF TFCPGRKDWQSLVMNQLTEIGKLLSLENDNQPKRRKVEEMLDKVID hide sequence

Ensembl Acc Id:

ENSRNOP00000051496 ⟸ ENSRNOT00000041362

Ensembl Acc Id:

ENSRNOP00000090283 ⟸ ENSRNOT00000107903

RefSeq Acc Id:	XP_063141012 ⟸ XM_063284942
- Peptide Label:	isoform X1
- UniProtKB:	F1M0U1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141013 ⟸ XM_063284943
- Peptide Label:	isoform X3
- UniProtKB:	F1M0U1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063141015 ⟸ XM_063284945
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_063141014 ⟸ XM_063284944
- Peptide Label:	isoform X4
- UniProtKB:	F1M0U1 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000110167 ⟸ ENSRNOT00000134846

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1M0U1-F1-model_v2	AlphaFold	F1M0U1	1-1030	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13692270

Promoter ID:

EPDNEW_R2791

Type:

single initiation site

Name:

Ccdc73_1

Description:

coiled-coil domain containing 73

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	3	94,848,821 - 94,848,881	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563448	AgrOrtholog
BioCyc Gene	G2FUF-48527	BioCyc
Ensembl Genes	ENSRNOG00000022660	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000041362	ENTREZGENE
	ENSRNOT00000041362.7	UniProtKB/TrEMBL
	ENSRNOT00000107903	ENTREZGENE
	ENSRNOT00000107903.2	UniProtKB/TrEMBL
	ENSRNOT00000134846	ENTREZGENE
	ENSRNOT00000134846.1	UniProtKB/TrEMBL
InterPro	CCDC73	UniProtKB/TrEMBL
KEGG Report	rno:499848	UniProtKB/TrEMBL
NCBI Gene	499848	ENTREZGENE
PANTHER	COILED-COIL DOMAIN-CONTAINING PROTEIN 73	UniProtKB/TrEMBL
	PTHR28660	UniProtKB/TrEMBL
Pfam	CCDC73	UniProtKB/TrEMBL
PhenoGen	Ccdc73	PhenoGen
RatGTEx	ENSRNOG00000022660	RatGTEx
UniProt	A0A8I6AC57	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0M4J1_RAT	UniProtKB/TrEMBL
	A6HNV5	ENTREZGENE, UniProtKB/TrEMBL
	F1M0U1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Ccdc73	coiled-coil domain containing 73	RGD1563448_predicted	similar to hypothetical protein 4931417A20 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1563448_predicted	similar to hypothetical protein 4931417A20 (predicted)	LOC499848	similar to hypothetical protein 4931417A20	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC499848	similar to hypothetical protein 4931417A20			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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