Etl4 (enhancer trap locus 4) - Rat Genome Database

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Gene: Etl4 (enhancer trap locus 4) Rattus norvegicus
Analyze
Symbol: Etl4
Name: enhancer trap locus 4
RGD ID: 1563437
Description: Predicted to be involved in embryonic skeletal system development. Predicted to be located in centrosome. Predicted to be active in cytoplasm. Orthologous to human KIAA1217 (KIAA1217); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC291356; LOC681362; RGD1563437; sickle tail protein homolog; similar to KIAA1217; similar to p130Cas-associated protein (p140Cap) (SNAP-25-interacting protein) (SNIP)
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Alliance Genes
More Info more info ...
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81787,749,486 - 88,213,158 (+)NCBIGRCr8
mRatBN7.21782,841,075 - 83,304,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1782,495,041 - 83,304,715 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01787,173,265 - 87,681,268 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1787,274,944 - 87,681,317 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01788,907,032 - 89,371,569 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41794,757,415 - 94,770,668 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1782,076,243 - 82,570,601 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
1,2-dichloroethane  (ISO)
1,2-dimethylhydrazine  (ISO)
17beta-estradiol  (EXP)
17beta-hydroxy-5alpha-androstan-3-one  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP)
2,3,7,8-Tetrachlorodibenzofuran  (EXP)
2-hydroxypropanoic acid  (ISO)
4,4'-sulfonyldiphenol  (ISO)
4-hydroxyphenyl retinamide  (ISO)
6-propyl-2-thiouracil  (EXP)
aflatoxin B1  (ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
amitrole  (EXP)
aristolochic acid A  (ISO)
arsenite(3-)  (ISO)
atrazine  (EXP)
benzo[a]pyrene  (ISO)
benzo[e]pyrene  (ISO)
bicalutamide  (ISO)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
Brodifacoum  (EXP)
buta-1,3-diene  (ISO)
cadmium atom  (ISO)
cadmium dichloride  (ISO)
caffeine  (ISO)
carbon nanotube  (ISO)
chromium(6+)  (ISO)
cobalt dichloride  (EXP)
coumarin  (ISO)
dibutyl phthalate  (ISO)
dicrotophos  (ISO)
dioxygen  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
endosulfan  (EXP)
entinostat  (ISO)
ethanol  (ISO)
folic acid  (ISO)
FR900359  (ISO)
fulvestrant  (ISO)
genistein  (ISO)
glyphosate  (EXP)
hydralazine  (ISO)
maneb  (ISO)
mercury dibromide  (ISO)
methamphetamine  (ISO)
methapyrilene  (EXP,ISO)
methimazole  (EXP)
methoxychlor  (EXP)
nickel sulfate  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paraquat  (EXP,ISO)
phenylmercury acetate  (ISO)
potassium chromate  (ISO)
pregnenolone 16alpha-carbonitrile  (ISO)
progesterone  (ISO)
pyridaben  (ISO)
quercetin  (ISO)
rac-lactic acid  (ISO)
SB 431542  (ISO)
silver atom  (ISO)
silver(0)  (ISO)
sodium arsenate  (ISO)
sodium dichromate  (EXP)
sulfadimethoxine  (EXP)
sunitinib  (ISO)
temozolomide  (ISO)
testosterone  (ISO)
thioacetamide  (EXP)
topotecan  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
valproic acid  (ISO)
vinclozolin  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
centrosome  (ISO)
cytoplasm  (IBA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16204209  


Genomics

Comparative Map Data
Etl4
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81787,749,486 - 88,213,158 (+)NCBIGRCr8
mRatBN7.21782,841,075 - 83,304,868 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1782,495,041 - 83,304,715 (+)EnsemblmRatBN7.2 Ensembl
Rnor_6.01787,173,265 - 87,681,268 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1787,274,944 - 87,681,317 (+)EnsemblRnor6.0rn6Rnor6.0
Rnor_5.01788,907,032 - 89,371,569 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.41794,757,415 - 94,770,668 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
Celera1782,076,243 - 82,570,601 (+)NCBICelera
Cytogenetic Map17q12.3NCBI
KIAA1217
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381023,694,727 - 24,547,843 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1023,694,746 - 24,547,848 (+)EnsemblGRCh38hg38GRCh38
GRCh371023,983,656 - 24,836,772 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 361024,023,681 - 24,876,778 (+)NCBINCBI36Build 36hg18NCBI36
Build 341024,538,098 - 24,876,777NCBI
Celera1023,671,793 - 24,528,691 (+)NCBICelera
Cytogenetic Map10p12.2-p12.1NCBI
HuRef1023,645,038 - 24,497,899 (+)NCBIHuRef
CHM1_11023,983,988 - 24,836,727 (+)NCBICHM1_1
T2T-CHM13v2.01023,714,870 - 24,566,404 (+)NCBIT2T-CHM13v2.0
Etl4
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39219,915,018 - 20,815,346 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl219,914,591 - 20,815,524 (+)EnsemblGRCm39 Ensembl
GRCm38219,910,207 - 20,810,535 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl219,909,780 - 20,810,713 (+)EnsemblGRCm38mm10GRCm38
MGSCv37220,211,540 - 20,732,162 (+)NCBIGRCm37MGSCv37mm9NCBIm37
MGSCv36220,207,667 - 20,728,289 (+)NCBIMGSCv36mm8
Celera220,173,205 - 20,685,415 (+)NCBICelera
Cytogenetic Map2A3NCBI
cM Map214.27NCBI
Kiaa1217
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554294,587,329 - 5,064,671 (-)EnsemblChiLan1.0
ChiLan1.0NW_0049554294,587,329 - 5,064,712 (-)NCBIChiLan1.0ChiLan1.0
KIAA1217
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v2836,741,617 - 37,249,768 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11036,747,031 - 37,255,099 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01023,870,239 - 24,725,508 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11024,754,270 - 25,095,365 (+)NCBIpanpan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1024,754,677 - 25,093,844 (+)Ensemblpanpan1.1panPan2
KIAA1217
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.128,908,697 - 9,341,004 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl28,908,906 - 9,340,966 (-)EnsemblCanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha27,601,943 - 7,890,996 (-)NCBIDog10K_Boxer_Tasha
ROS_Cfam_1.027,107,375 - 7,400,060 (-)NCBIROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl27,107,754 - 7,544,394 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.126,476,257 - 6,765,598 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.026,552,720 - 6,842,392 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.026,721,825 - 7,455,622 (-)NCBIUU_Cfam_GSD_1.0
Kiaa1217
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440934423,422,268 - 24,153,979 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493648433,086 - 319,307 (+)EnsemblSpeTri2.0SpeTri2.0 Ensembl
SpeTri2.0NW_00493648433,125 - 319,136 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
KIAA1217
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1050,707,054 - 51,205,619 (-)EnsemblSscrofa11.1susScr11Sscrofa11.1
Sscrofa11.11050,706,713 - 51,032,010 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21056,157,812 - 56,331,115 (-)NCBISscrofa10.2Sscrofa10.2susScr3
KIAA1217
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1923,449,280 - 24,285,657 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl924,102,767 - 24,285,658 (+)EnsemblChlSab1.1ChlSab1.1 EnsemblchlSab2
Vero_WHO_p1.0NW_02366605129,726,575 - 30,221,458 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Kiaa1217
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247964,341,393 - 4,606,108 (-)EnsemblHetGla_female_1.0HetGla_female_1.0 EnsemblhetGla2
HetGla 1.0NW_0046247964,340,228 - 4,761,036 (-)NCBIHetGla_female_1.0HetGla 1.0hetGla2

Variants

.
Variants in Etl4
3739 total Variants
miRNA Target Status

Predicted Target Of
Summary Value
Count of predictions:505
Count of miRNA genes:111
Interacting mature miRNAs:124
Transcripts:ENSRNOT00000011646, ENSRNOT00000057655, ENSRNOT00000068390, ENSRNOT00000072768, ENSRNOT00000073658, ENSRNOT00000073718, ENSRNOT00000075216
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2317054Aia12Adjuvant induced arthritis QTL 124.24joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)173828150983281509Rat
2317060Aia26Adjuvant induced arthritis QTL 263.22joint integrity trait (VT:0010548)right rear ankle joint diameter (CMO:0002150)173828150983281509Rat
1358295Aocep1Aortic cell protein QTL 16.10.00000071thoracic aorta cellular protein amount (VT:0010598)aortic cell percentage174099000585990005Rat
7411575Bw140Body weight QTL 14030.20.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
8694181Bw151Body weight QTL 1514.360.001body mass (VT:0001259)body weight gain (CMO:0000420)174856093586533673Rat
2317038Ginf3Gastrointestinal inflammation QTL 32.890.005liver integrity trait (VT:0010547)liver granuloma severity score (CMO:0002157)174992015486533673Rat
2303580Gluco49Glucose level QTL 492blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)175004027186533673Rat
4889894Eae33Experimental allergic encephalomyelitis QTL 335.20.0001nervous system integrity trait (VT:0010566)experimental autoimmune encephalomyelitis severity score (CMO:0001419)175090909986022412Rat
2317045Aia11Adjuvant induced arthritis QTL 114.06joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)176078142686533673Rat
7411577Bw141Body weight QTL 1410.001body mass (VT:0001259)body weight gain (CMO:0000420)176261951686533673Rat

Markers in Region
BE104351  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21783,280,111 - 83,280,278 (+)MAPPERmRatBN7.2
Rnor_6.01787,656,515 - 87,656,681NCBIRnor6.0
Rnor_5.01789,346,816 - 89,346,982UniSTSRnor5.0
Celera1782,545,846 - 82,546,012UniSTS
RH 3.4 Map17873.0UniSTS
Cytogenetic Map17q12.3UniSTS
RH138670  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21783,113,432 - 83,113,679 (+)MAPPERmRatBN7.2
mRatBN7.22216,164,169 - 216,164,413 (+)MAPPERmRatBN7.2
Rnor_6.02232,033,215 - 232,033,458NCBIRnor6.0
Rnor_6.01787,490,477 - 87,490,723NCBIRnor6.0
Rnor_5.01789,181,425 - 89,181,671UniSTSRnor5.0
Rnor_5.02251,378,703 - 251,378,946UniSTSRnor5.0
RGSC_v3.42224,967,472 - 224,967,715UniSTSRGSC3.4
RGSC_v3.41794,592,933 - 94,593,179UniSTSRGSC3.4
Celera1782,379,911 - 82,380,157UniSTS
Celera2208,479,226 - 208,479,469UniSTS
Cytogenetic Map2q42UniSTS
Cytogenetic Map17q12.3UniSTS
Cytogenetic Map9q31UniSTS
RH139721  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21783,304,583 - 83,304,785 (+)MAPPERmRatBN7.2
Rnor_6.01787,680,984 - 87,681,185NCBIRnor6.0
Rnor_5.01789,371,285 - 89,371,486UniSTSRnor5.0
RGSC_v3.41794,771,516 - 94,771,717UniSTSRGSC3.4
Celera1782,570,317 - 82,570,518UniSTS
RH 3.4 Map17872.31UniSTS
Cytogenetic Map17q12.3UniSTS
RH141889  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21782,893,302 - 82,893,500 (+)MAPPERmRatBN7.2
Rnor_6.01787,260,627 - 87,260,824NCBIRnor6.0
Rnor_5.01788,959,453 - 88,959,650UniSTSRnor5.0
RGSC_v3.41794,343,809 - 94,344,006UniSTSRGSC3.4
Celera1782,163,085 - 82,163,282UniSTS
Cytogenetic Map17q12.3UniSTS


Expression


RNA-SEQ Expression
High: > 1000 TPM value   Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM   Below Cutoff: < 0.5 TPM

alimentary part of gastrointestinal system circulatory system endocrine system exocrine system hemolymphoid system hepatobiliary system integumental system musculoskeletal system nervous system renal system reproductive system respiratory system appendage
High
Medium 3 33 11 8 2 8 5 6 42 35 39 11 5
Low 10 46 33 17 33 3 5 32 2 3
Below cutoff

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001427790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222481 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006222482 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254331 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006254332 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771907 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771909 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771911 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771912 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008771913 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774028 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774029 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774030 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774031 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774033 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774035 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774036 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008774037 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017587768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600795 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600796 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096217 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096218 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096221 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096222 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096223 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096224 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096225 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096226 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096227 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096229 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096230 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096231 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276268 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276269 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276270 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276271 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276272 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276273 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276274 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276275 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276276 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276277 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276278 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276279 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276280 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276281 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276282 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276283 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276284 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473990 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

RefSeq Acc Id: ENSRNOT00000073718   ⟹   ENSRNOP00000064638
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1783,023,001 - 83,304,715 (+)Ensembl
Rnor_6.0 Ensembl1787,274,944 - 87,681,317 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096341   ⟹   ENSRNOP00000085969
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1783,011,508 - 83,304,715 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000096762   ⟹   ENSRNOP00000086839
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1783,011,508 - 83,304,715 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000102713   ⟹   ENSRNOP00000092656
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1783,244,777 - 83,302,594 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000107420   ⟹   ENSRNOP00000087978
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1782,495,041 - 83,304,715 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000114046   ⟹   ENSRNOP00000086860
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1782,806,407 - 83,304,715 (+)Ensembl
RefSeq Acc Id: ENSRNOT00000116431   ⟹   ENSRNOP00000077128
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1783,011,508 - 83,304,715 (+)Ensembl
RefSeq Acc Id: NM_001427790   ⟹   NP_001414719
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,919,806 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_008771907   ⟹   XP_008770129
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,749,488 - 88,213,158 (+)NCBI
mRatBN7.21782,841,075 - 83,304,868 (+)NCBI
Rnor_6.01787,396,008 - 87,681,268 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039096217   ⟹   XP_038952145
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,749,490 - 88,213,158 (+)NCBI
mRatBN7.21782,841,077 - 83,304,868 (+)NCBI
RefSeq Acc Id: XM_039096218   ⟹   XP_038952146
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,749,491 - 88,213,158 (+)NCBI
mRatBN7.21782,841,079 - 83,304,868 (+)NCBI
RefSeq Acc Id: XM_039096219   ⟹   XP_038952147
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,919,786 - 88,213,158 (+)NCBI
mRatBN7.21783,011,477 - 83,304,868 (+)NCBI
RefSeq Acc Id: XM_039096221   ⟹   XP_038952149
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,919,788 - 88,213,158 (+)NCBI
mRatBN7.21783,011,477 - 83,304,868 (+)NCBI
RefSeq Acc Id: XM_039096222   ⟹   XP_038952150
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,919,788 - 88,213,158 (+)NCBI
mRatBN7.21783,011,477 - 83,304,868 (+)NCBI
RefSeq Acc Id: XM_039096223   ⟹   XP_038952151
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,953,148 - 88,213,158 (+)NCBI
mRatBN7.21783,051,708 - 83,304,868 (+)NCBI
RefSeq Acc Id: XM_039096224   ⟹   XP_038952152
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,061,123 - 88,213,158 (+)NCBI
mRatBN7.21783,152,823 - 83,304,868 (+)NCBI
RefSeq Acc Id: XM_039096225   ⟹   XP_038952153
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,131,644 - 88,213,158 (+)NCBI
mRatBN7.21783,221,927 - 83,304,868 (+)NCBI
RefSeq Acc Id: XM_039096226   ⟹   XP_038952154
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,147,214 - 88,213,158 (+)NCBI
mRatBN7.21783,229,183 - 83,304,868 (+)NCBI
RefSeq Acc Id: XM_039096227   ⟹   XP_038952155
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,749,508 - 88,213,158 (+)NCBI
mRatBN7.21782,841,088 - 83,304,868 (+)NCBI
RefSeq Acc Id: XM_039096229   ⟹   XP_038952157
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,749,506 - 88,213,158 (+)NCBI
mRatBN7.21782,841,088 - 83,304,868 (+)NCBI
RefSeq Acc Id: XM_039096230   ⟹   XP_038952158
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,919,746 - 88,213,158 (+)NCBI
mRatBN7.21783,011,478 - 83,304,868 (+)NCBI
RefSeq Acc Id: XM_039096231   ⟹   XP_038952159
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,919,789 - 88,213,158 (+)NCBI
mRatBN7.21783,011,478 - 83,304,868 (+)NCBI
RefSeq Acc Id: XM_063276268   ⟹   XP_063132338
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,749,486 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276269   ⟹   XP_063132339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,749,490 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276270   ⟹   XP_063132340
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,749,491 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276271   ⟹   XP_063132341
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,919,787 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276272   ⟹   XP_063132342
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,953,148 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276273   ⟹   XP_063132343
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,131,644 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276274   ⟹   XP_063132344
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,147,216 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276275   ⟹   XP_063132345
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,131,643 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276276   ⟹   XP_063132346
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,131,644 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276277   ⟹   XP_063132347
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,147,218 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276278   ⟹   XP_063132348
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,147,211 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276279   ⟹   XP_063132349
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,131,644 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276280   ⟹   XP_063132350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,131,640 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276281   ⟹   XP_063132351
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81787,919,789 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276282   ⟹   XP_063132352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,131,651 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276283   ⟹   XP_063132353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,147,233 - 88,213,158 (+)NCBI
RefSeq Acc Id: XM_063276284   ⟹   XP_063132354
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81788,131,649 - 88,213,158 (+)NCBI
Protein Sequences
Protein RefSeqs NP_001414719 (Get FASTA)   NCBI Sequence Viewer  
  XP_008770129 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952145 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952146 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952147 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952149 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952150 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952151 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952152 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952153 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952154 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952155 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952157 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952158 (Get FASTA)   NCBI Sequence Viewer  
  XP_038952159 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132338 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132339 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132340 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132341 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132342 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132343 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132344 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132345 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132346 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132347 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132348 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132349 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132350 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132351 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132352 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132353 (Get FASTA)   NCBI Sequence Viewer  
  XP_063132354 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDL78786 (Get FASTA)   NCBI Sequence Viewer  
  EDL78787 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000064638
  ENSRNOP00000064638.3
  ENSRNOP00000077128.1
  ENSRNOP00000085969
  ENSRNOP00000085969.1
  ENSRNOP00000086839
  ENSRNOP00000086839.1
  ENSRNOP00000086860
  ENSRNOP00000086860.1
  ENSRNOP00000087978
  ENSRNOP00000087978.1
  ENSRNOP00000092656.1
RefSeq Acc Id: XP_008770129   ⟸   XM_008771907
- Peptide Label: isoform X7
- UniProtKB: A0A8I6GEH8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: ENSRNOP00000064638   ⟸   ENSRNOT00000073718
RefSeq Acc Id: XP_038952145   ⟸   XM_039096217
- Peptide Label: isoform X2
- UniProtKB: A0A8I6GEH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952146   ⟸   XM_039096218
- Peptide Label: isoform X3
- UniProtKB: A0A8I6GEH8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952157   ⟸   XM_039096229
- Peptide Label: isoform X22
- UniProtKB: A0A8I6A455 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952155   ⟸   XM_039096227
- Peptide Label: isoform X21
- UniProtKB: A6JMB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952147   ⟸   XM_039096219
- Peptide Label: isoform X4
- UniProtKB: M0R5H1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952149   ⟸   XM_039096221
- Peptide Label: isoform X9
- UniProtKB: M0R5H1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952150   ⟸   XM_039096222
- Peptide Label: isoform X10
- UniProtKB: A0A8I6A6M2 (UniProtKB/TrEMBL),   M0R5H1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952159   ⟸   XM_039096231
- Peptide Label: isoform X25
- UniProtKB: A0A8I6A455 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952158   ⟸   XM_039096230
- Peptide Label: isoform X24
- UniProtKB: A0A8I6A4F8 (UniProtKB/TrEMBL),   A6JMB1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952151   ⟸   XM_039096223
- Peptide Label: isoform X11
- UniProtKB: M0R5H1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952152   ⟸   XM_039096224
- Peptide Label: isoform X13
- UniProtKB: M0R5H1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952153   ⟸   XM_039096225
- Peptide Label: isoform X14
- UniProtKB: M0R5H1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038952154   ⟸   XM_039096226
- Peptide Label: isoform X14
- UniProtKB: M0R5H1 (UniProtKB/TrEMBL)
RefSeq Acc Id: ENSRNOP00000086860   ⟸   ENSRNOT00000114046
RefSeq Acc Id: ENSRNOP00000092656   ⟸   ENSRNOT00000102713
RefSeq Acc Id: ENSRNOP00000086839   ⟸   ENSRNOT00000096762
RefSeq Acc Id: ENSRNOP00000087978   ⟸   ENSRNOT00000107420
RefSeq Acc Id: ENSRNOP00000085969   ⟸   ENSRNOT00000096341
RefSeq Acc Id: ENSRNOP00000077128   ⟸   ENSRNOT00000116431
RefSeq Acc Id: XP_063132338   ⟸   XM_063276268
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063132339   ⟸   XM_063276269
- Peptide Label: isoform X5
RefSeq Acc Id: XP_063132340   ⟸   XM_063276270
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063132341   ⟸   XM_063276271
- Peptide Label: isoform X8
RefSeq Acc Id: XP_063132351   ⟸   XM_063276281
- Peptide Label: isoform X23
RefSeq Acc Id: NP_001414719   ⟸   NM_001427790
RefSeq Acc Id: XP_063132342   ⟸   XM_063276272
- Peptide Label: isoform X12
RefSeq Acc Id: XP_063132350   ⟸   XM_063276280
- Peptide Label: isoform X20
RefSeq Acc Id: XP_063132345   ⟸   XM_063276275
- Peptide Label: isoform X16
RefSeq Acc Id: XP_063132343   ⟸   XM_063276273
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063132346   ⟸   XM_063276276
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063132349   ⟸   XM_063276279
- Peptide Label: isoform X19
RefSeq Acc Id: XP_063132354   ⟸   XM_063276284
- Peptide Label: isoform X28
RefSeq Acc Id: XP_063132352   ⟸   XM_063276282
- Peptide Label: isoform X26
RefSeq Acc Id: XP_063132348   ⟸   XM_063276278
- Peptide Label: isoform X18
RefSeq Acc Id: XP_063132344   ⟸   XM_063276274
- Peptide Label: isoform X15
RefSeq Acc Id: XP_063132347   ⟸   XM_063276277
- Peptide Label: isoform X17
RefSeq Acc Id: XP_063132353   ⟸   XM_063276283
- Peptide Label: isoform X27
Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-M0R5H1-F1-model_v2 AlphaFold M0R5H1 1-1958 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563437 AgrOrtholog
BioCyc Gene G2FUF-8518 BioCyc
Ensembl Genes ENSRNOG00000008666 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000073718.4 UniProtKB/TrEMBL
  ENSRNOT00000096341.1 UniProtKB/TrEMBL
  ENSRNOT00000096762.1 UniProtKB/TrEMBL
  ENSRNOT00000102713.1 UniProtKB/TrEMBL
  ENSRNOT00000107420.1 UniProtKB/TrEMBL
  ENSRNOT00000114046.1 UniProtKB/TrEMBL
  ENSRNOT00000116431.1 UniProtKB/TrEMBL
Gene3D-CATH Actin interacting protein 3, C-terminal domain UniProtKB/TrEMBL
InterPro AIP3_C UniProtKB/TrEMBL
NCBI Gene 291356 ENTREZGENE
PANTHER P140CAP/SNIP-RELATED UniProtKB/TrEMBL
  PTHR22741:SF11 UniProtKB/TrEMBL
Pfam AIP3 UniProtKB/TrEMBL
PhenoGen Etl4 PhenoGen
RatGTEx ENSRNOG00000008666 RatGTEx
UniProt A0A8I5YBN1_RAT UniProtKB/TrEMBL
  A0A8I6A455 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A4F8 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6M2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AHF5_RAT UniProtKB/TrEMBL
  A0A8I6GEH8 ENTREZGENE, UniProtKB/TrEMBL
  A6JMB1 ENTREZGENE, UniProtKB/TrEMBL
  M0R5H1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2015-07-29 Etl4  enhancer trap locus 4  LOC681362  similar to p130Cas-associated protein (p140Cap) (SNAP-25-interacting protein) (SNIP)  Data merged from RGD:1596728 737654 PROVISIONAL
2010-05-21 Etl4  enhancer trap locus 4  RGD1563437  similar to KIAA1217  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1563437  similar to KIAA1217   RGD1563437_predicted  similar to KIAA1217 (predicted)  'predicted' is removed 2292626 APPROVED
2006-11-20 LOC681362  similar to p130Cas-associated protein (p140Cap) (SNAP-25-interacting protein) (SNIP)      Symbol and Name status set to provisional 70820 PROVISIONAL
2006-03-07 RGD1563437_predicted  similar to KIAA1217 (predicted)  LOC291356  similar to KIAA1217  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC291356  similar to KIAA1217      Symbol and Name status set to provisional 70820 PROVISIONAL