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Gene: Shroom4 (shroom family member 4) Rattus norvegicus

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Symbol:

Shroom4

Name:

shroom family member 4

RGD ID:

1563434

Description:

Predicted to enable actin filament binding activity and myosin II binding activity. Involved in regulation of postsynaptic membrane neurotransmitter receptor levels. Is active in several cellular components, including GABA-ergic synapse; glutamatergic synapse; and postsynapse. Orthologous to human SHROOM4 (shroom family member 4); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran; 3,3',4,4',5-pentachlorobiphenyl.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC317391; RGD1563434; similar to mKIAA1202 protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SHROOM4 (shroom family member 4)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Shroom4 (shroom family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Shroom4 (shroom family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SHROOM4 (shroom family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SHROOM4 (shroom family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Shroom4 (shroom family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SHROOM4 (shroom family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SHROOM4 (shroom family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Shroom4 (shroom family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Shroom4 (shroom family member 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SHROOM4 (shroom family member 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Shroom4 (shroom family member 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	shroom4 (shroom family member 4)	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Shroom	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Drosophila melanogaster (fruit fly):	Shroom	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER)
Xenopus tropicalis (tropical clawed frog):	shroom4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	shroom4	Alliance	DIOPT (Ensembl Compara\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	18,537,371 - 18,748,665 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	18,540,913 - 18,748,700 (-)	Ensembl				GRCr8
mRatBN7.2	X	15,869,065 - 16,076,850 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	15,869,065 - 16,076,869 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	20,679,710 - 20,887,970 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	19,195,300 - 19,403,570 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	15,460,250 - 15,668,526 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	16,723,360 - 16,929,829 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	16,719,803 - 16,929,907 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	17,500,772 - 17,711,666 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	29,125,307 - 29,334,579 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	15,939,398 - 16,146,959 (-)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

intellectual disability (ISO)

Stocco Dos Santos type X-linked intellectual disability (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

3,3',4,4',5-pentachlorobiphenyl (EXP)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cefaloridine (EXP)

choline (ISO)

dibutyl phthalate (ISO)

dimethylarsinic acid (ISO)

doxorubicin (ISO)

endosulfan (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

gentamycin (EXP)

L-methionine (ISO)

methotrexate (ISO)

methylarsonic acid (ISO)

nickel atom (ISO)

paracetamol (EXP,ISO)

perfluorooctanoic acid (EXP)

potassium dichromate (ISO)

resveratrol (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

temozolomide (ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

troglitazone (ISO)

urethane (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

actin filament organization (IBA,ISO)

biological_process (ND)

brain development (IEA,ISO)

cell morphogenesis (ISO)

cognition (IEA,ISO)

regulation of postsynaptic membrane neurotransmitter receptor levels (IDA,IMP)

Cellular Component

actin cytoskeleton (IEA,ISO)

actin filament (IEA,ISO)

adherens junction (IBA)

apical junction complex (IBA)

apical plasma membrane (IBA,IEA,ISO)

basal plasma membrane (IEA,ISO)

cortical actin cytoskeleton (IBA,IEA,ISO)

cytoplasm (IEA,ISO)

cytoplasmic side of plasma membrane (IEA,ISO)

cytoskeleton (IEA)

GABA-ergic synapse (IDA)

glutamatergic synapse (IDA)

postsynapse (IDA)

presynapse (IDA)

stress fiber (IEA,ISO)

Molecular Function

actin binding (IEA)

actin filament binding (IBA,IEA,ISO)

myosin II binding (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	OMIM Disease Annotation Pipeline	OMIM Disease Annotation Pipeline
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	Epilepsy and intellectual disability linked protein Shrm4 interaction with GABABRs shapes inhibitory neurotransmission.	Zapata J, etal., Nat Commun. 2017 Mar 6;8:14536. doi: 10.1038/ncomms14536.

Additional References at PubMed

PMID:16249884	PMID:16684770	PMID:17009331

Genomics

Comparative Map Data

Shroom4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	18,537,371 - 18,748,665 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	18,540,913 - 18,748,700 (-)	Ensembl				GRCr8
mRatBN7.2	X	15,869,065 - 16,076,850 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	15,869,065 - 16,076,869 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	20,679,710 - 20,887,970 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	19,195,300 - 19,403,570 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	15,460,250 - 15,668,526 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	16,723,360 - 16,929,829 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	16,719,803 - 16,929,907 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	17,500,772 - 17,711,666 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	29,125,307 - 29,334,579 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	15,939,398 - 16,146,959 (-)	NCBI		Celera
Cytogenetic Map	X	q12	NCBI

SHROOM4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	50,575,534 - 50,814,194 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	50,586,796 - 50,814,302 (-)	Ensembl			hg38	GRCh38
GRCh37	X	50,329,796 - 50,557,194 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	50,351,387 - 50,573,784 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	X	54,378,231 - 54,600,597 (-)	NCBI		Celera
Cytogenetic Map	X	p11.22	NCBI
HuRef	X	47,778,364 - 48,000,648 (-)	NCBI		HuRef
CHM1_1	X	50,414,359 - 50,636,708 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	49,846,979 - 50,085,560 (-)	NCBI		T2T-CHM13v2.0

Shroom4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	6,312,012 - 6,549,508 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	6,311,908 - 6,549,502 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	6,399,949 - 6,637,454 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	6,399,854 - 6,637,448 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	5,977,263 - 6,210,835 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	5,575,508 - 5,812,930 (+)	NCBI		MGSCv36	mm8
Celera	X	4,778,748 - 5,011,260 (-)	NCBI		Celera
Cytogenetic Map	X	A1.1	NCBI
cM Map	X	2.85	NCBI

Shroom4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955543	1,809,804 - 1,909,800 (-)	Ensembl
ChiLan1.0	NW_004955543	1,810,125 - 2,046,144 (-)	NCBI	ChiLan1.0	ChiLan1.0

SHROOM4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	51,940,087 - 52,188,702 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	51,945,765 - 52,192,297 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	42,673,968 - 42,974,947 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	50,464,617 - 50,568,075 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	50,464,824 - 50,687,221 (-)	Ensembl			panPan2	panpan1.1

SHROOM4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	43,366,921 - 43,639,525 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	43,369,472 - 43,639,302 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	17,743,343 - 18,016,771 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	43,486,469 - 43,759,942 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	43,487,462 - 43,760,464 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	43,490,284 - 43,763,685 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	43,478,265 - 43,751,712 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	43,573,217 - 43,846,683 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Shroom4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	35,828,330 - 36,037,677 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936721	2,068,731 - 2,166,537 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SHROOM4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	44,332,620 - 44,543,337 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	44,301,956 - 44,543,969 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	49,298,058 - 49,474,957 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SHROOM4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	47,392,156 - 47,618,816 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	47,397,570 - 47,616,973 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666086	984,033 - 1,212,187 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Shroom4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624893	2,373,815 - 2,660,199 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624893	2,373,847 - 2,660,122 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Shroom4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	16,167,475 - 16,373,694 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Shroom4
1047 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	188
Count of miRNA genes:	135
Interacting mature miRNAs:	147
Transcripts:	ENSRNOT00000003971
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	44939387	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1970440	46970440	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	8111486	53111486	Rat
634325	Bw13	Body weight QTL 13	0		body mass (VT:0001259)	body weight (CMO:0000012)	X	4001493	24470521	Rat

Markers in Region

AI407145

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	15,882,009 - 15,882,257 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	16,736,304 - 16,736,551	NCBI	Rnor6.0
Rnor_5.0	X	17,517,258 - 17,517,505	UniSTS	Rnor5.0
RGSC_v3.4	X	29,321,387 - 29,321,634	UniSTS	RGSC3.4
Celera	X	15,952,343 - 15,952,590	UniSTS
RH 3.4 Map	X	179.9	UniSTS
Cytogenetic Map	X	q13	UniSTS

BE107425

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	16,001,308 - 16,001,481 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	16,853,639 - 16,853,811	NCBI	Rnor6.0
Rnor_5.0	X	17,635,783 - 17,635,955	UniSTS	Rnor5.0
RGSC_v3.4	X	29,200,492 - 29,200,664	UniSTS	RGSC3.4
Celera	X	16,071,740 - 16,071,912	UniSTS
RH 3.4 Map	X	174.6	UniSTS
Cytogenetic Map	X	q13	UniSTS

AU049129

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	15,932,275 - 15,932,543 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	16,784,633 - 16,784,900	NCBI	Rnor6.0
Rnor_5.0	X	17,567,455 - 17,567,722	UniSTS	Rnor5.0
RGSC_v3.4	X	29,271,083 - 29,271,350	UniSTS	RGSC3.4
Celera	X	16,002,773 - 16,003,040	UniSTS
Cytogenetic Map	X	q13	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	154	91	90	59	59	59	6	323	159	10	133	81	92	31	14	14

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191730	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256763	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602065	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099796	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474078	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000003971 ⟹ ENSRNOP00000003971

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	18,540,913 - 18,748,700 (-)	Ensembl
mRatBN7.2 Ensembl	X	15,869,065 - 16,076,869 (-)	Ensembl
Rnor_6.0 Ensembl	X	16,719,803 - 16,929,907 (-)	Ensembl

RefSeq Acc Id:

NM_001191730 ⟹ NP_001178659

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	18,540,913 - 18,748,515 (-)	NCBI
mRatBN7.2	X	15,869,065 - 16,076,688 (-)	NCBI
Rnor_6.0	X	16,723,360 - 16,929,829 (-)	NCBI
Rnor_5.0	X	17,500,772 - 17,711,666 (-)	NCBI
Celera	X	15,939,398 - 16,146,959 (-)	NCBI

Sequence:

show sequence

ATGGAGAACCGGCCGGGGTCCTTCCAGTACGTCCCGGTGCAGCTGCAAGGGGGGGCGCCCTGGG
GCTTCACCCTGAAGGGGGGCTTGGAGCACTGCGAGCCGCTCACGGTGTCGAAGATTGAAGATGG
AGGCAAGGCAGCCTTGTCCCAGAAGATGCGGACTGGTGATGAACTGGTAAATATCAATGGCACT
CCATTGTATGGCTCCCGCCAAGAGGCCCTCATCCTCATCAAAGGCTCCTTCAGGATCCTCAAGC
TGATTGTCAGGAGGAGAAACACCCCTGTGAGTAGGCCGCACTCATGGCATGTGGCCAAGCTATT
GGAGGGGTGCCCTGACGTGGCCACCACCATGCATTTCCCTTCTGAAGCCTTCAGCTTGTCCTGG
CATTCTGGTTGCAACACAAGTGACGTGAGTGTACAGTGGTGCCCACTCTCCCGGCATTGTAGCA
CTGAGAAAAGCAGCTCTATTGGCAGCATGGAGAGCCTGGAACAGCCAGGCCAAGCTACCTACGA
GGGCCACCTCTTACCCATTGAGCAGAACATGTACCCCAGCCAGCGTGACTCAGCCTACAGCTCC
TTCTCAGCCAGCTCAAATGCCTCTGACTGTGCCCTTTCCCTTAAGCCAGAGGAACCACCCTCTA
CAGACTGTGTCATGTCAGGCCCAGGGCCGACTAAAGTCACTGATGACCAAGCTAATGTATCTGA
GACCTCAGGAAGTAGCCATAGTACCAGTGGGGGCCACATGACCTCCACTTCCCATGCATCATCC
TGCTCAGAAGAAGGGCACCACTCAGGACCTGCCAAGATGGTGCGGGGTCCACCAGAGCCTCCAG
TGAGGCGGGACAGCCTTCAGGCCTCTAGAGCCCAACTTCTCAATGGAGAGCAGCATCGTGCATC
TGAACCTGTGGACTCCTTACAGCAAAAGGAAAAACCAGCCTTAGAGACAATGCTGCCCCCAAGG
AGCTCTAACCAGTTCTGCTGCATTAGTGGGCAAGACCAGGTGACAGGTGAGGACCACCAGAACT
GTGAGCTCAGCAAGCCTTCTGAATCCAGCCAGGATGACTGTGACCATCTACTGATAGAGGGCTC
CTCCAAAGCTCTTGATTCTCCAAAGGCCCATGACAAAGGTTCCAACAAAGAGTTTGGCCTGCTT
AAGGAGGCTTCAGCAGATCTGGCTAACACTTTGTCTTTTGGTGCCATCCCGCACCTCCGAGGAA
GCATAGAACATCGCCATAGTGCTCCTGAACAGCTGTTGGCATCCCACTTGCAGCAGATGCACCT
TGATTCCAGAGGCAACAAGGGGATGGAGTTGCCAACTGGGCAGGATGGACACCAGTGGACCATG
TCCCCTTTGCACAACAACCCTAAAGGGAAGAAAAGTCCAGGTCTCCCCACAGGAGGTACCCAGG
ACCAGACCAGCAAAGAAAGGAAGATCAAGCCCACAGATGATAAGCTGATGGTTTCTGCAAACCA
GAGCCAAAGTGATGCCCTACTTGGAGAGGTCGATGGACACCCATCAGAACGAACTTACCTAGAC
TCAAACCGAGCAAGCAGAGCAAGCAGTGACTTGACTGGCCAGCAGCCCTCTGCCACTTGCTCCC
CTGTTCAACAAACCAGAGACTTCTTTTCAGCCAATAAAGTAGTTGGTCACACTGAAGCAACTGA
AGAAGGTGACAATGAGCCTAAGGAAGGTGGCCGATTGGGTGGCAGAAGAAGTGGAGGCCCCCGA
GGTCGCTCCATCCAAAACCGACGGAAGAGTGAGAGGTTCGCTACCAATCTACGGAATGAAATTC
AGAGGAGGAAAGCCCAGCTCCAGAAAAGTAAGGGCCCCTTGTCACAATTGTGTGACACTAAGGA
AGATGTGGAAGAGACCCAAGAGCCTCCAGAAAGCCCTCCACTCCCTGCTTCTAACTCATCCCTT
CTGCCTTCATATAAAAACGTCCCTAGCCATGGAGATCAGCTCTTTAACAAAAGCATGATTCTCA
GGGCTAGGTCTTCAGAATGCCTCAGCCAAGCCTCAGAGAGCTCTAAAGCTAGGGTAGGCTTAGA
GGGAAGAATGAGCCCTGGCCAGAGGTCTGGCCAGTCTTCTTTGGCCCTGAACACATGGTGGAAG
GCATCTGACTCATCCACCTTAGACACTGAGAAAGCAAATGCTCACCACGGGGTCTGTAGAGGTC
ACTGGAGATGGTCTCCAGAACATAACGCACAGCCACAGGTGGCACTCTCCACAGAGGGTCCTTC
CAACCCAGATGACAACAAAGAATTGAAGATACCTACTCCTCAGGCTGGGGATGAAGCCATCCTC
ATGCCATTTGCAGACAGAAGAAAGTTCTTTGAAGAGAGCAGCAAATCTTTATCTACATCTCATT
TGCCAGGCTTAACCACTCACAACAAGCCATTTATCCAGAGACCAAAACCTATAGATCAAAACTT
CCAGTCAGTGAGCTATAGGGAATTACGATGCCATCCTATGGACCAATCATATCATTCTGCAGAC
CAACCATACCATGCTGCTGACCAATCATATCATTCCTTGTCACCACTTCAGTCAGAAGCTCCCA
CTTACCCAGACTGCTTTGCTCCCAAAGGCGTAGATAATTCCCTGTACTGTAAGCCAGTGCACCA
TGGGGATTGTGATTACCACAGGACCTGTTCTCATCCCTGCAGTGCTCAGGGAACTGTAATGCAT
GATCCTTGCATTTGCTGTTCTGGAGAAATTTGCCCTGCCTTGCTAAAGAGAAATTTGTTGCCAA
AATGCCACAACTGTAGGTGTCACCATCACCAATGCATCCGGTGTACAGGTTGCTGTCACAGTCC
TCAGCATGGTGCCCATGAGGACAGCAGTATGGCATCTGGCAATGCTTGGAAATCCAGGAAGGCA
GCCATACAGGAATTTCCTGTGGACAAGTGGAAGCCAATAACAGGAAACAGGAAAACTAGTCATT
CCGGGAGGGAAATGGCTCATTCTAAGGCCAACTTGTCATTGTCTGCTCCCTTCCGGCCTCACAT
TGAGAACTCAGCACTGGACTTGTCAAACTACCGAGCAGTCTCTTCGCTTGACCTCCTTGGAGAC
TTCAAACATGCCTCGAACACTCCAGAGGAATCTTCAGTTTATGAGGATGAGAGCTCCGTTGCCT
CCATGCCCCGCCCACTGCGGAGCCGAGCCTTCTCTGAGAGTCACATCAGTTTAGAGCCACAAAA
CACCCGGGCCTGGGGGAAACAGCAAAGGGAATCATTTAGTAAAGGCAGTGAGACTCAGCCAGAT
ACTCTTGGGGCCCGAAAGAAGGCCTTTCCTCCCCCTCGCCCTCCTCCTCCCAATTGGGAAAAAT
ATAGGCTCTTTCGTGCAGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCA
GCAGCAGCAGCAGCAATGTGAAAAGGAAGAAGAGGAGGAGAAGGAGCAAGAGGAGAAGGGAGAG
AAAGAAGAGGACCTACCGCCCCAGTATTTTAGTTCAGAAACCACTGGATCATGTGCCCCTATTA
CAGAGGAGCAGCCACAGTCCCTGAAGATGGGCCACCAGGAAGCCTCAAGGCAGAGTTCACAGAG
CCTCCAAGAGCAAGAGGCCTATGCTGTGCATCCCAGCAATTTTGTGCCTGCAGTAAGGAGCTAC
CCTGTAACCCAGCCCGAGAAAGCTCAACCTCCTTGCTATTACGGCGCTCATGGACTGTGGAGGA
CAACTGAGCAAGAAGCTACTGTGACCCCAAAACAAGAGTTTCAGCACTTCTCACCTCCTACAGG
GGCCTCAGGAATCCCTACCTCTTACTCAGCTTATTATAATATCTCTGTGGCCAAGGCAGAACTG
CTGAACAAGTTAAAACAGCAGCCTGAGATGGCTGAGGCAGGCCTGGGAGAGGAGGGAGTTGACT
ATGAACTGGCTCAAAAAAAGATTCAGCTCATTGAAAGCATTAGTAGAAAACTTTCTGTCCTGCG
GGAGGCCCAGCGTGGGCTACTGGATGACATCAATGCCAACGCTGCCCTTGGAGAGGAGGTGGAG
GTCAACTTAAAAGCTGTCTGCAAGTCCAATGAGTTGGAAAAGTATCATTTGTTTATTGGAGACC
TGGACAAAGTGGTCAACCTGTTGTTGTCACTCTCTGGACGACTGGCCCGGGTAGAGAATGCTCT
CAACAGCATCGATGCTGAGTCCAACCAGGAGAAGTTGGTGCTGAGAGAGAAGAAGCAGCAGCTG
ACGAACCAGTTGGCAGATGCCAAAGAGCTGAAGGAGCATGTGGACCGCAGGGAGAAGCTGGTGT
TCAGCATGGTCTCCCGCTACCTGCCGCAGGACCAGCTCCAAGATTACCAGCACTTTGTGAAGAT
GAAATCTGCTCTCATCATTGAGCAGAGAGAGCTGGAGGAGAAGATCAAACTTGGAGAAGAACAG
CTTAAATGCCTCAAAGAGAGCCTGCACTTGGGGCCCAGCAATTTCTAATTACAGCAGAAGTGTG
CCATTGCACCAGTGGAAAAGGGCTCTGTCTTTAGGAGCAGTTTGTTAGCCAAGTATATCGAAAT
TACTTAGCAGATGAGTCCAGCCATCTACCTTGGCCAGCCATCAAGGAGAGCCTGGGAAGGCCCC
ATGCTTCTCTCCTATGGAGCTGCAGCGAGGTATGGCTACACTGCCATGCTCTTTCTCAGTAAAT
GAGACTTAAAAAGTGCCTTCATCTCTGTACCAGAATACCAAAGACTTCACAAACTCAATGCTCT
CCCTT

hide sequence

RefSeq Acc Id:

XM_006256763 ⟹ XP_006256825

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	18,537,371 - 18,588,941 (-)	NCBI
mRatBN7.2	X	15,869,342 - 15,917,100 (-)	NCBI
Rnor_6.0	X	16,723,637 - 16,769,603 (-)	NCBI
Rnor_5.0	X	17,500,772 - 17,711,666 (-)	NCBI

Sequence:

show sequence

CTGCTGGAACTGCCTTTCCTCCTTCTCCTTGCCACTAGGGCGCTGGCTGGTTCCTGGAGCAACG
TCTTTACTCTTATCCAGGCCTTATAACACCGGCTCACATTCCGTAGGGCTGTGGCTACAGACAA
ACCCAAGCAGCCTGATGGCTGTACCCTGCAGTCTCTCTGAACTCCTTGGATGATATTTAGGGTG
TTGGGCTGCTGGCCTCACACCCCAGGAGGTCTAAAGTTGAAGGTTGCCAGTTCCCAGCTAAGAG
AAGATACTGGAGTGGTTGATGGTGAGAATGTGAACTAGCTGGCTACGCAATCTCTCATAAGCCA
TCTCTCCTCTGTGAGCAACTTCCATGGAGAAACACCCCTGTGAGTAGGCCGCACTCATGGCATG
TGGCCAAGCTATTGGAGGGGTGCCCTGACGTGGCCACCACCATGCATTTCCCTTCTGAAGCCTT
CAGCTTGTCCTGGCATTCTGGTTGCAACACAAGTGACGTGAGTGTACAGTGGTGCCCACTCTCC
CGGCATTGTAGCACTGAGAAAAGCAGCTCTATTGGCAGCATGGAGAGCCTGGAACAGCCAGGCC
AAGCTACCTACGAGGGCCACCTCTTACCCATTGAGCAGAACATGTACCCCAGCCAGCGTGACTC
AGCCTACAGCTCCTTCTCAGCCAGCTCAAATGCCTCTGACTGTGCCCTTTCCCTTAAGCCAGAG
GAACCACCCTCTACAGACTGTGTCATGTCAGGCCCAGGGCCGACTAAAGTCACTGATGACCAAG
CTAATGTATCTGAGACCTCAGGAAGTAGCCATAGTACCAGTGGGGGCCACATGACCTCCACTTC
CCATGCATCATCCTGCTCAGAAGAAGGGCACCACTCAGGACCTGCCAAGATGGTGCGGGGTCCA
CCAGAGCCTCCAGTGAGGCGGGACAGCCTTCAGGCCTCTAGAGCCCAACTTCTCAATGGAGAGC
AGCATCGTGCATCTGAACCTGTGGACTCCTTACAGCAAAAGGAAAAACCAGCCTTAGAGACAAT
GCTGCCCCCAAGGAGCTCTAACCAGTTCTGCTGCATTAGTGGGCAAGACCAGGTGACAGGTGAG
GACCACCAGAACTGTGAGCTCAGCAAGCCTTCTGAATCCAGCCAGGATGACTGTGACCATCTAC
TGATAGAGGGCTCCTCCAAAGCTCTTGATTCTCCAAAGGCCCATGACAAAGGTTCCAACAAAGA
GTTTGGCCTGCTTAAGGAGGCTTCAGCAGATCTGGCTAACACTTTGTCTTTTGGTGCCATCCCG
CACCTCCGAGGAAGCATAGAACATCGCCATAGTGCTCCTGAACAGCTGTTGGCATCCCACTTGC
AGCAGATGCACCTTGATTCCAGAGGCAACAAGGGGATGGAGTTGCCAACTGGGCAGGATGGACA
CCAGTGGACCATGTCCCCTTTGCACAACAACCCTAAAGGGAAGAAAAGTCCAGGTCTCCCCACA
GGAGGTACCCAGGACCAGACCAGCAAAGAAAGGAAGATCAAGCCCACAGATGATAAGCTGATGG
TTTCTGCAAACCAGAGCCAAAGTGATGCCCTACTTGGAGAGGTCGATGGACACCCATCAGAACG
AACTTACCTAGACTCAAACCGAGCAAGCAGAGCAAGCAGTGACTTGACTGGCCAGCAGCCCTCT
GCCACTTGCTCCCCTGTTCAACAAACCAGAGACTTCTTTTCAGCCAATAAAGTAGTTGGTCACA
CTGAAGCAACTGAAGAAGGTGACAATGAGCCTAAGGAAGGTGGCCGATTGGGTGGCAGAAGAAG
TGGAGGCCCCCGAGGTCGCTCCATCCAAAACCGACGGAAGAGTGAGAGGTTCGCTACCAATCTA
CGGAATGAAATTCAGAGGAGGAAAGCCCAGCTCCAGAAAAGTAAGGGCCCCTTGTCACAATTGT
GTGACACTAAGGAAGATGTGGAAGAGACCCAAGAGCCTCCAGAAAGCCCTCCACTCCCTGCTTC
TAACTCATCCCTTCTGCCTTCATATAAAAACGTCCCTAGCCATGGAGATCAGCTCTTTAACAAA
AGCATGATTCTCAGGGCTAGGTCTTCAGAATGCCTCAGCCAAGCCTCAGAGAGCTCTAAAGCTA
GGGTAGGCTTAGAGGGAAGAATGAGCCCTGGCCAGAGGTCTGGCCAGTCTTCTTTGGCCCTGAA
CACATGGTGGAAGGCATCTGACTCATCCACCTTAGACACTGAGAAAGCAAATGCTCACCACGGG
GTCTGTAGAGGTCACTGGAGATGGTCTCCAGAACATAACGCACAGCCACAGGTGGCACTCTCCA
CAGAGGGTCCTTCCAACCCAGATGACAACAAAGAATTGAAGATACCTACTCCTCAGGCTGGGGA
TGAAGCCATCCTCATGCCATTTGCAGACAGAAGAAAGTTCTTTGAAGAGAGCAGCAAATCTTTA
TCTACATCTCATTTGCCAGGCTTAACCACTCACAACAAGCCATTTATCCAGAGACCAAAACCTA
TAGATCAAAACTTCCAGTCAGTGAGCTATAGGGAATTACGATGCCATCCTATGGACCAATCATA
TCATTCTGCAGACCAACCATACCATGCTGCTGACCAATCATATCATTCCTTGTCACCACTTCAG
TCAGAAGCTCCCACTTACCCAGACTGCTTTGCTCCCAAAGGCGTAGATAATTCCCTGTACTGTA
AGCCAGTGCACCATGGGGATTGTGATTACCACAGGACCTGTTCTCATCCCTGCAGTGCTCAGGG
AACTGTAATGCATGATCCTTGCATTTGCTGTTCTGGAGAAATTTGCCCTGCCTTGCTAAAGAGA
AATTTGTTGCCAAAATGCCACAACTGTAGGTGTCACCATCACCAATGCATCCGGTGTACAGGTT
GCTGTCACAGTCCTCAGCATGGTGCCCATGAGGACAGCAGTATGGCATCTGGCAATGCTTGGAA
ATCCAGGAAGGCAGCCATACAGGAATTTCCTGTGGACAAGTGGAAGCCAATAACAGGAAACAGG
AAAACTAGTCATTCCGGGAGGGAAATGGCTCATTCTAAGGCCAACTTGTCATTGTCTGCTCCCT
TCCGGCCTCACATTGAGAACTCAGCACTGGACTTGTCAAACTACCGAGCAGTCTCTTCGCTTGA
CCTCCTTGGAGACTTCAAACATGCCTCGAACACTCCAGAGGAATCTTCAGTTTATGAGGATGAG
AGCTCCGTTGCCTCCATGCCCCGCCCACTGCGGAGCCGAGCCTTCTCTGAGAGTCACATCAGTT
TAGAGCCACAAAACACCCGGGCCTGGGGGAAACAGCAAAGGGAATCATTTAGTAAAGGCAGTGA
GACTCAGCCAGATACTCTTGGGGCCCGAAAGAAGGCCTTTCCTCCCCCTCGCCCTCCTCCTCCC
AATTGGGAAAAATATAGGCTCTTTCGTGCAGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAGCAGCAGCAGCAGCAATGTGAAAAGGAAGAAGAGGAGGAGAAGGAGCAAGA
GGAGAAGGGAGAGAAAGAAGAGGACCTACCGCCCCAGTATTTTAGTTCAGAAACCACTGGATCA
TGTGCCCCTATTACAGAGGAGCAGCCACAGTCCCTGAAGATGGGCCACCAGGAAGCCTCAAGGC
AGAGTTCACAGAGCCTCCAAGAGCAAGAGGCCTATGCTGTGCATCCCAGCAATTTTGTGCCTGC
AGTAAGGAGCTACCCTGTAACCCAGCCCGAGAAAGCTCAACCTCCTTGCTATTACGGCGCTCAT
GGACTGTGGAGGACAACTGAGCAAGAAGCTACTGTGACCCCAAAACAAGAGTTTCAGCACTTCT
CACCTCCTACAGGGGCCTCAGGAATCCCTACCTCTTACTCAGCTTATTATAATATCTCTGTGGC
CAAGGCAGAACTGCTGAACAAGTTAAAACAGCAGCCTGAGATGGCTGAGGCAGGCCTGGGAGAG
GAGGGAGTTGACTATGAACTGGCTCAAAAAAAGATTCAGCTCATTGAAAGCATTAGTAGAAAAC
TTTCTGTCCTGCGGGAGGCCCAGCGTGGGCTACTGGATGACATCAATGCCAACGCTGCCCTTGG
AGAGGAGGTGGAGGTCAACTTAAAAGCTGTCTGCAAGTCCAATGAGTTGGAAAAGTATCATTTG
TTTATTGGAGACCTGGACAAAGTGGTCAACCTGTTGTTGTCACTCTCTGGACGACTGGCCCGGG
TAGAGAATGCTCTCAACAGCATCGATGCTGAGTCCAACCAGGAGAAGTTGGTGCTGAGAGAGAA
GAAGCAGCAGCTGACGAACCAGTTGGCAGATGCCAAAGAGCTGAAGGAGCATGTGGACCGCAGG
GAGAAGCTGGTGTTCAGCATGGTCTCCCGCTACCTGCCGCAGGACCAGCTCCAAGATTACCAGC
ACTTTGTGAAGATGAAATCTGCTCTCATCATTGAGCAGAGAGAGCTGGAGGAGAAGATCAAACT
TGGAGAAGAACAGCTTAAATGCCTCAAAGAGAGCCTGCACTTGGGGCCCAGCAATTTCTAA

hide sequence

RefSeq Acc Id:

XM_017602065 ⟹ XP_017457554

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	18,537,371 - 18,735,520 (-)	NCBI
mRatBN7.2	X	15,869,342 - 16,075,779 (-)	NCBI
Rnor_6.0	X	16,723,637 - 16,919,585 (-)	NCBI

Sequence:

show sequence

GTCTGTCTGTCTGTCTGTCTGTCTGTCTCCTGGAAGTGCTAGGGATAGAACCTAGGGCTTGGGG
CATGCTAAGGGATCAGTCAATCAATCTACAAACTGAGTCATATCCCAGGCCTGTTTTTTGTCAA
GAACAGTTCTCTTCTGAGCTACAGCTATATCTGTAGCCTTCAGAAGATCAGAATCTTAGTCTTA
ATGGCTGCCCCTCATCTGTGAGCCTTTTAAGTAAGTCAGTTTCCTTGTTGTGTCTAGGTTTTAT
AATTATCAAATGAAAATTGTCAAATTTGTATGATCCAATAATAAGAAGTAGAAAAAGAAGCCAG
GAATTTGAGAGCAGGGAGTGGTATATGGAAGGGCTGAAGCGGGGAATATATTTAAATTATAATC
TCAACAGTAAAATGAAATGAACTTGTATGGTTATTCCAATAGAGGTGATTTCTTTCTCCTTTAC
TTCATATAAATACCACTGGCATATGTGATTGAAGAAGGAAATAGAATATCCTAGGTATCCTTAT
TAAGCTGAAATTCTTGTTAAATAATAAAATGTTTGAAGTTGGCAAATGTGCATGAAATGACAGG
ACAATTTTAATGTGATGTCTACAACTGCCCGAGGTAGACAAGATTTTTGCCCCATGTCTAAATA
GCTGGAGCTTTAAAGGGCTGTGTTAAACCTTGTTTGGTTGTCCTAAAAACTCTCAATTAAGACT
CCAATCTATGAATCAATCAGCCAATCAGCCAATGAACCAGTTAACTAATCTGCACATCAGAGCA
CAGATTTGTGGAGCACTTTGCAGAGTTCCTACTCCTAAACCACAGAATTCATGACATGACCACC
AGAGTAGACCTGATCTTTGGATTCTCAAAGAGATGACATGTTTATTGAAGTTTATTTATGTACA
TAACTACTGTATGTCTAGGGAACAAAAACCTTTGGATGCTGAGACCATAGAATAAAATCTAATA
AGATTTGTTCATGGTTCAATGTTGGGAGCTTTGTGGGAAAAGTAAAAATTGAAGCTGGACCTGA
GGGGTACATGCATGGTACTTAGGCAGTCTTGGGTGGTAGAAGAGAGTTTGTTCTGATTGGATGA
ATGCCTTAAAAGATGCAGGCAGAATTACTGTATTTAAACTAGGCATCCAGTATAGTCCCAGTCA
CATAACTGCATGTCTGAGGAGAGACCTAAAGTGACTGATTGATCAGAAGAGACCTTTTGGAGCA
ATATGGTAATGTGCTGAGAGTGTGTTAGATGTCAGGTAACCAGGGGTTAGTGACAATATATACC
ACTAAAAGAATGAAGCAGAAGTTAATAGGTATGGGAGCTGATGCCTCTATTTCAAATGTAGAAG
ATGGGGATTGACAGGGGAAGCAGTTTGTACTTTGGTTTTGGTCTTCTGATACTTCTTATGGGAC
AATCAAGCTGGGGAGTAGTAGGCAGGTGGGGACAAACACAAAGAGGTTTGTTTATATCTGCTTA
CTTAGGGGTTCAATCAATTGAAATAGCAAGTCATTCTGTTAGGAATACTGTTGTCAACACACAA
TTTTCTAATCTATTGATTGTTCTGTAAATCAGTTAATTGCCAGACTATCCTATGCCCCAAAGAC
TTAGGAAACTGGCCTGCTTTGTGATTTAATGAGCATCCCTGGCTTTGTCTGGTTAGCAAACAGA
CAAAGTTTAGGTTAGTTTGTTTGGATCTGCAGGATGCCTAGTCAGTAGAGGTGTTGCTAGCTGG
AGTTCTAGGAAAAAAAGCAAGTAAACAAAAAAAAATCCAAACCTCAGATGGACATGATAAAATG
GATTGAGGCTTCTAAAAAATATCAGTTGACTTTGCCAAGATGTTTAAGGATTGTTTTCTGTATA
TGTAAAATAAAATGTGGTAGCTTGTGAGGCAAACCTCAAACCACAGGAGTTTCAAGTTTCTGTT
CCATTTTGATTGGTAGAAGTATTCTCCTCTCTGCCTGGCATGAGCTAATATTAATCTGTAAATA
TTATTGTTTATGATTTTGGAATAATAAGTGTTCTTTAATACGACCTTTAAAAATATTGTTCAAC
TTCCATGTGGGATTTCATTGCCTAGGTTTTGTCTTTACCACCCTAAAAATAAAGAGGAGATGGG
GATTCATCTTACAACCTCTTGTGCTGTAAATCTGGCTGGGGAAATATTTTATCATTGAAATTTG
TACAAGTTTGGAGTGATTACCTGTAGCACTGATGTTCTTTATCTTTATACTTAATAGAATGCCT
TAGAGTCAATTTGTGTGTAGATGTACCTGTCAATTTGAGGACCATCCTATCTCTTCTACTTCCC
ATCCTTCATGAATCGAGTTTCTACCTCATTACTACTTTGTGCAACAGCATCTACTTTTCTCCAC
CTTATGAAACTAAATGCAGAACTTTGTAAAAATGCCCGTACTGTGGAAATTGGTCTAAACCCAT
TCCTAGCTCTTTGTAGCTAAAACAACACTGTTTGCTCTAAGGTTAATGCGCATGTAGGTTCTTT
AGTTTGCCTCCTTTCTCTCACCAGGTAAAATAACTTGTAATTTATATTTGAAATCCATTCAAAT
ACCTAGCTGCTGGGGGAGACATTTTTTGGTGTGGCAGAGATTGCTTGAGTGCTAGGCTCTTACA
AGAGCTAGCTTGCTGACTGCTCTGCTGTGTGAGCTGGGGTGGGAGGCTAACTTTCCTCTTCTAG
ATGTAAAGGGCTCAATATATAATTTTCGTGCTTTCTCCGTGCCCTTGGCTTGAGAAATGTGCTC
AGGCTCTGTACATACTGGATCTGCTTAAGGAAGGTTTTGGCTCTTAGCCCTGTTCAGCTGCAGG
GTTTGAGTTACAGACTCCCTTTCCAGCCCCTAATAAAAAGCAAAGGAATGAAGGGCAGAACCAG
GGAGAGTTAATTTCCACTGCTAAGACCCAGGTAAGGTACTTCTATCTCCCATAACCCTAGGTTG
TAGTCCTAATTTAAGGCTGAACTCTACTTTAAGCCTGTAAGTGATGGTGATCTGGAACAGGCTC
CTGACAATCAAGTTTTGCCCTATGCTAGGTCTTCTTTTCCCCTTTCTTTTGCCTGTCTCTCTTT
CTCTTCGCTTCATCTTTTACTTCCTGTTCTGTTGGGAGCTCGGAGGCTGAGATTCTAGCAACCA
AGTCAACTGTTACTACTGGACAAGAAGAAATGGTATATCATTTTTCCTTTCCTCTAAACTGAGA
GCTTTTCAGAAGCTTCTCCCACCCCACCCTGTTAATTCACAGACCCAACCTCAAGACAAAACCT
AGAAGTCTTAATCTGAGTAAAAAGTATTATTGGTATCACTCCCAACTCAAAAGAGAGGCATGAG
ATGGTGAACTCAGATGGAGAAAGGCAGCTTTGAAAGAAGATCTAGAAAAAACTGGAATAGTAAA
ATGGGGCTTCCGCTTGGAGGAACAACTACCATAATGAATTTGCTTTCTCAAGTGGTTTTCCACC
CTTTGATCATTCTCATCCCCAGATGGCTCCAGGTGGAATGACCAACTTCCCTTAGAAACTGTGG
TGAACCTCAAATCCTCATGTTAGCTTTGTATGGAGGGAACATGTGATGATAATGATGGTAGAGG
AAGTTAGGAAGGACCCCTCCAGTGCAACAGTGCAACCTGAGATGTGAAGAGGGGTGACAGTAGT
GGGGGATGAGGGTTTCTCTAGGCTGCTTGGCTTGCTGCATATGTAAGCTGTATTCTGCAGGCTG
GCATTGGGGAGTGAAAATGTAGGCAAGTATTGCTGTGAGACTGTAACACAACAGTCATTCTGCT
GGTTACTCTGTGTGAATTCAGAGAGGGTATAGTGACTTTTGTGCTTGATTCAAGCACTTCATTT
CTTCAGCTGAAATTCGAAGACTTTAAATCAGTGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTGTGTGTATGTGTGTGTTTTGTTTCTTTTGCTTAAACAAGCCCAAACGTGTTCTATT
TCACTGGCCTTGGTTGTGAGTCACTGTCTGGTATTTATACATAATGCCTTAAGTGTCTTCGTTA
TTTGACCATGACATTCCTTTTCTCACTGTTTCACTCAAAGCTGAGAACGCCAAGAAAGGAAAAA
AGGAACTGACTAATGAGGCTTAATGTCATTGGTGCTCGTCTGTATGACGGTCAGGTTATCTTAG
GTCACTAAGGGGACAGGTTAAGAATCAGTATTCAAATACTCAGGGATAGCACGGTGACACCAGG
AGTGCTTAGTTTGCTACTGCCCAGTCTACTGCAGCAGAGCGTGTTTTACGGCCGTGGACTCAGA
GCTGGTTTGTCTCGGGACCCCAGAAAGGATATATCCTGATTAGAATCTCTTATTGAAGATGGAG
GCAAGGCAGCCTTGTCCCAGAAGATGCGGACTGGTGATGAACTGGTAAATATCAATGGCACTCC
ATTGTATGGCTCCCGCCAAGAGGCCCTCATCCTCATCAAAGGCTCCTTCAGGATCCTCAAGCTG
ATTGTCAGGAGGAGAAACACCCCTGTGAGTAGGCCGCACTCATGGCATGTGGCCAAGCTATTGG
AGGGGTGCCCTGACGTGGCCACCACCATGCATTTCCCTTCTGAAGCCTTCAGCTTGTCCTGGCA
TTCTGGTTGCAACACAAGTGACGTGAGTGTACAGTGGTGCCCACTCTCCCGGCATTGTAGCACT
GAGAAAAGCAGCTCTATTGGCAGCATGGAGAGCCTGGAACAGCCAGGCCAAGCTACCTACGAGG
GCCACCTCTTACCCATTGAGCAGAACATGTACCCCAGCCAGCGTGACTCAGCCTACAGCTCCTT
CTCAGCCAGCTCAAATGCCTCTGACTGTGCCCTTTCCCTTAAGCCAGAGGAACCACCCTCTACA
GACTGTGTCATGTCAGGCCCAGGGCCGACTAAAGTCACTGATGACCAAGCTAATGTATCTGAGA
CCTCAGGAAGTAGCCATAGTACCAGTGGGGGCCACATGACCTCCACTTCCCATGCATCATCCTG
CTCAGAAGAAGGGCACCACTCAGGACCTGCCAAGATGGTGCGGGGTCCACCAGAGCCTCCAGTG
AGGCGGGACAGCCTTCAGGCCTCTAGAGCCCAACTTCTCAATGGAGAGCAGCATCGTGCATCTG
AACCTGTGGACTCCTTACAGCAAAAGGAAAAACCAGCCTTAGAGACAATGCTGCCCCCAAGGAG
CTCTAACCAGTTCTGCTGCATTAGTGGGCAAGACCAGGTGACAGGTGAGGACCACCAGAACTGT
GAGCTCAGCAAGCCTTCTGAATCCAGCCAGGATGACTGTGACCATCTACTGATAGAGGGCTCCT
CCAAAGCTCTTGATTCTCCAAAGGCCCATGACAAAGGTTCCAACAAAGAGTTTGGCCTGCTTAA
GGAGGCTTCAGCAGATCTGGCTAACACTTTGTCTTTTGGTGCCATCCCGCACCTCCGAGGAAGC
ATAGAACATCGCCATAGTGCTCCTGAACAGCTGTTGGCATCCCACTTGCAGCAGATGCACCTTG
ATTCCAGAGGCAACAAGGGGATGGAGTTGCCAACTGGGCAGGATGGACACCAGTGGACCATGTC
CCCTTTGCACAACAACCCTAAAGGGAAGAAAAGTCCAGGTCTCCCCACAGGAGGTACCCAGGAC
CAGACCAGCAAAGAAAGGAAGATCAAGCCCACAGATGATAAGCTGATGGTTTCTGCAAACCAGA
GCCAAAGTGATGCCCTACTTGGAGAGGTCGATGGACACCCATCAGAACGAACTTACCTAGACTC
AAACCGAGCAAGCAGAGCAAGCAGTGACTTGACTGGCCAGCAGCCCTCTGCCACTTGCTCCCCT
GTTCAACAAACCAGAGACTTCTTTTCAGCCAATAAAGTAGTTGGTCACACTGAAGCAACTGAAG
AAGGTGACAATGAGCCTAAGGAAGGTGGCCGATTGGGTGGCAGAAGAAGTGGAGGCCCCCGAGG
TCGCTCCATCCAAAACCGACGGAAGAGTGAGAGGTTCGCTACCAATCTACGGAATGAAATTCAG
AGGAGGAAAGCCCAGCTCCAGAAAAGTAAGGGCCCCTTGTCACAATTGTGTGACACTAAGGAAG
ATGTGGAAGAGACCCAAGAGCCTCCAGAAAGCCCTCCACTCCCTGCTTCTAACTCATCCCTTCT
GCCTTCATATAAAAACGTCCCTAGCCATGGAGATCAGCTCTTTAACAAAAGCATGATTCTCAGG
GCTAGGTCTTCAGAATGCCTCAGCCAAGCCTCAGAGAGCTCTAAAGCTAGGGTAGGCTTAGAGG
GAAGAATGAGCCCTGGCCAGAGGTCTGGCCAGTCTTCTTTGGCCCTGAACACATGGTGGAAGGC
ATCTGACTCATCCACCTTAGACACTGAGAAAGCAAATGCTCACCACGGGGTCTGTAGAGGTCAC
TGGAGATGGTCTCCAGAACATAACGCACAGCCACAGGTGGCACTCTCCACAGAGGGTCCTTCCA
ACCCAGATGACAACAAAGAATTGAAGATACCTACTCCTCAGGCTGGGGATGAAGCCATCCTCAT
GCCATTTGCAGACAGAAGAAAGTTCTTTGAAGAGAGCAGCAAATCTTTATCTACATCTCATTTG
CCAGGCTTAACCACTCACAACAAGCCATTTATCCAGAGACCAAAACCTATAGATCAAAACTTCC
AGTCAGTGAGCTATAGGGAATTACGATGCCATCCTATGGACCAATCATATCATTCTGCAGACCA
ACCATACCATGCTGCTGACCAATCATATCATTCCTTGTCACCACTTCAGTCAGAAGCTCCCACT
TACCCAGACTGCTTTGCTCCCAAAGGCGTAGATAATTCCCTGTACTGTAAGCCAGTGCACCATG
GGGATTGTGATTACCACAGGACCTGTTCTCATCCCTGCAGTGCTCAGGGAACTGTAATGCATGA
TCCTTGCATTTGCTGTTCTGGAGAAATTTGCCCTGCCTTGCTAAAGAGAAATTTGTTGCCAAAA
TGCCACAACTGTAGGTGTCACCATCACCAATGCATCCGGTGTACAGGTTGCTGTCACAGTCCTC
AGCATGGTGCCCATGAGGACAGCAGTATGGCATCTGGCAATGCTTGGAAATCCAGGAAGGCAGC
CATACAGGAATTTCCTGTGGACAAGTGGAAGCCAATAACAGGAAACAGGAAAACTAGTCATTCC
GGGAGGGAAATGGCTCATTCTAAGGCCAACTTGTCATTGTCTGCTCCCTTCCGGCCTCACATTG
AGAACTCAGCACTGGACTTGTCAAACTACCGAGCAGTCTCTTCGCTTGACCTCCTTGGAGACTT
CAAACATGCCTCGAACACTCCAGAGGAATCTTCAGTTTATGAGGATGAGAGCTCCGTTGCCTCC
ATGCCCCGCCCACTGCGGAGCCGAGCCTTCTCTGAGAGTCACATCAGTTTAGAGCCACAAAACA
CCCGGGCCTGGGGGAAACAGCAAAGGGAATCATTTAGTAAAGGCAGTGAGACTCAGCCAGATAC
TCTTGGGGCCCGAAAGAAGGCCTTTCCTCCCCCTCGCCCTCCTCCTCCCAATTGGGAAAAATAT
AGGCTCTTTCGTGCAGCGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC
AGCAGCAGCAGCAATGTGAAAAGGAAGAAGAGGAGGAGAAGGAGCAAGAGGAGAAGGGAGAGAA
AGAAGAGGACCTACCGCCCCAGTATTTTAGTTCAGAAACCACTGGATCATGTGCCCCTATTACA
GAGGAGCAGCCACAGTCCCTGAAGATGGGCCACCAGGAAGCCTCAAGGCAGAGTTCACAGAGCC
TCCAAGAGCAAGAGGCCTATGCTGTGCATCCCAGCAATTTTGTGCCTGCAGTAAGGAGCTACCC
TGTAACCCAGCCCGAGAAAGCTCAACCTCCTTGCTATTACGGCGCTCATGGACTGTGGAGGACA
ACTGAGCAAGAAGCTACTGTGACCCCAAAACAAGAGTTTCAGCACTTCTCACCTCCTACAGGGG
CCTCAGGAATCCCTACCTCTTACTCAGCTTATTATAATATCTCTGTGGCCAAGGCAGAACTGCT
GAACAAGTTAAAACAGCAGCCTGAGATGGCTGAGGCAGGCCTGGGAGAGGAGGGAGTTGACTAT
GAACTGGCTCAAAAAAAGATTCAGCTCATTGAAAGCATTAGTAGAAAACTTTCTGTCCTGCGGG
AGGCCCAGCGTGGGCTACTGGATGACATCAATGCCAACGCTGCCCTTGGAGAGGAGGTGGAGGT
CAACTTAAAAGCTGTCTGCAAGTCCAATGAGTTGGAAAAGTATCATTTGTTTATTGGAGACCTG
GACAAAGTGGTCAACCTGTTGTTGTCACTCTCTGGACGACTGGCCCGGGTAGAGAATGCTCTCA
ACAGCATCGATGCTGAGTCCAACCAGGAGAAGTTGGTGCTGAGAGAGAAGAAGCAGCAGCTGAC
GAACCAGTTGGCAGATGCCAAAGAGCTGAAGGAGCATGTGGACCGCAGGGAGAAGCTGGTGTTC
AGCATGGTCTCCCGCTACCTGCCGCAGGACCAGCTCCAAGATTACCAGCACTTTGTGAAGATGA
AATCTGCTCTCATCATTGAGCAGAGAGAGCTGGAGGAGAAGATCAAACTTGGAGAAGAACAGCT
TAAATGCCTCAAAGAGAGCCTGCACTTGGGGCCCAGCAATTTCTAA

hide sequence

RefSeq Acc Id:

XM_039099796 ⟹ XP_038955724

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	18,537,371 - 18,748,665 (-)	NCBI
mRatBN7.2	X	15,869,342 - 16,076,850 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178659	(Get FASTA)	NCBI Sequence Viewer
	XP_006256825	(Get FASTA)	NCBI Sequence Viewer
	XP_017457554	(Get FASTA)	NCBI Sequence Viewer
	XP_038955724	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL83868	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000003971
	ENSRNOP00000003971.6

RefSeq Acc Id:

NP_001178659 ⟸ NM_001191730

- UniProtKB:

F1LVL5 (UniProtKB/TrEMBL), A6KPC0 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MENRPGSFQYVPVQLQGGAPWGFTLKGGLEHCEPLTVSKIEDGGKAALSQKMRTGDELVNINGT
PLYGSRQEALILIKGSFRILKLIVRRRNTPVSRPHSWHVAKLLEGCPDVATTMHFPSEAFSLSW
HSGCNTSDVSVQWCPLSRHCSTEKSSSIGSMESLEQPGQATYEGHLLPIEQNMYPSQRDSAYSS
FSASSNASDCALSLKPEEPPSTDCVMSGPGPTKVTDDQANVSETSGSSHSTSGGHMTSTSHASS
CSEEGHHSGPAKMVRGPPEPPVRRDSLQASRAQLLNGEQHRASEPVDSLQQKEKPALETMLPPR
SSNQFCCISGQDQVTGEDHQNCELSKPSESSQDDCDHLLIEGSSKALDSPKAHDKGSNKEFGLL
KEASADLANTLSFGAIPHLRGSIEHRHSAPEQLLASHLQQMHLDSRGNKGMELPTGQDGHQWTM
SPLHNNPKGKKSPGLPTGGTQDQTSKERKIKPTDDKLMVSANQSQSDALLGEVDGHPSERTYLD
SNRASRASSDLTGQQPSATCSPVQQTRDFFSANKVVGHTEATEEGDNEPKEGGRLGGRRSGGPR
GRSIQNRRKSERFATNLRNEIQRRKAQLQKSKGPLSQLCDTKEDVEETQEPPESPPLPASNSSL
LPSYKNVPSHGDQLFNKSMILRARSSECLSQASESSKARVGLEGRMSPGQRSGQSSLALNTWWK
ASDSSTLDTEKANAHHGVCRGHWRWSPEHNAQPQVALSTEGPSNPDDNKELKIPTPQAGDEAIL
MPFADRRKFFEESSKSLSTSHLPGLTTHNKPFIQRPKPIDQNFQSVSYRELRCHPMDQSYHSAD
QPYHAADQSYHSLSPLQSEAPTYPDCFAPKGVDNSLYCKPVHHGDCDYHRTCSHPCSAQGTVMH
DPCICCSGEICPALLKRNLLPKCHNCRCHHHQCIRCTGCCHSPQHGAHEDSSMASGNAWKSRKA
AIQEFPVDKWKPITGNRKTSHSGREMAHSKANLSLSAPFRPHIENSALDLSNYRAVSSLDLLGD
FKHASNTPEESSVYEDESSVASMPRPLRSRAFSESHISLEPQNTRAWGKQQRESFSKGSETQPD
TLGARKKAFPPPRPPPPNWEKYRLFRAAQQQQQQQQQQQQQQQQQQQQCEKEEEEEKEQEEKGE
KEEDLPPQYFSSETTGSCAPITEEQPQSLKMGHQEASRQSSQSLQEQEAYAVHPSNFVPAVRSY
PVTQPEKAQPPCYYGAHGLWRTTEQEATVTPKQEFQHFSPPTGASGIPTSYSAYYNISVAKAEL
LNKLKQQPEMAEAGLGEEGVDYELAQKKIQLIESISRKLSVLREAQRGLLDDINANAALGEEVE
VNLKAVCKSNELEKYHLFIGDLDKVVNLLLSLSGRLARVENALNSIDAESNQEKLVLREKKQQL
TNQLADAKELKEHVDRREKLVFSMVSRYLPQDQLQDYQHFVKMKSALIIEQRELEEKIKLGEEQ
LKCLKESLHLGPSNF

hide sequence

RefSeq Acc Id:	XP_006256825 ⟸ XM_006256763
- Peptide Label:	isoform X2
- UniProtKB:	A6KPC0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MHFPSEAFSLSWHSGCNTSDVSVQWCPLSRHCSTEKSSSIGSMESLEQPGQATYEGHLLPIEQN MYPSQRDSAYSSFSASSNASDCALSLKPEEPPSTDCVMSGPGPTKVTDDQANVSETSGSSHSTS GGHMTSTSHASSCSEEGHHSGPAKMVRGPPEPPVRRDSLQASRAQLLNGEQHRASEPVDSLQQK EKPALETMLPPRSSNQFCCISGQDQVTGEDHQNCELSKPSESSQDDCDHLLIEGSSKALDSPKA HDKGSNKEFGLLKEASADLANTLSFGAIPHLRGSIEHRHSAPEQLLASHLQQMHLDSRGNKGME LPTGQDGHQWTMSPLHNNPKGKKSPGLPTGGTQDQTSKERKIKPTDDKLMVSANQSQSDALLGE VDGHPSERTYLDSNRASRASSDLTGQQPSATCSPVQQTRDFFSANKVVGHTEATEEGDNEPKEG GRLGGRRSGGPRGRSIQNRRKSERFATNLRNEIQRRKAQLQKSKGPLSQLCDTKEDVEETQEPP ESPPLPASNSSLLPSYKNVPSHGDQLFNKSMILRARSSECLSQASESSKARVGLEGRMSPGQRS GQSSLALNTWWKASDSSTLDTEKANAHHGVCRGHWRWSPEHNAQPQVALSTEGPSNPDDNKELK IPTPQAGDEAILMPFADRRKFFEESSKSLSTSHLPGLTTHNKPFIQRPKPIDQNFQSVSYRELR CHPMDQSYHSADQPYHAADQSYHSLSPLQSEAPTYPDCFAPKGVDNSLYCKPVHHGDCDYHRTC SHPCSAQGTVMHDPCICCSGEICPALLKRNLLPKCHNCRCHHHQCIRCTGCCHSPQHGAHEDSS MASGNAWKSRKAAIQEFPVDKWKPITGNRKTSHSGREMAHSKANLSLSAPFRPHIENSALDLSN YRAVSSLDLLGDFKHASNTPEESSVYEDESSVASMPRPLRSRAFSESHISLEPQNTRAWGKQQR ESFSKGSETQPDTLGARKKAFPPPRPPPPNWEKYRLFRAAQQQQQQQQQQQQQQQQQQQQCEKE EEEEKEQEEKGEKEEDLPPQYFSSETTGSCAPITEEQPQSLKMGHQEASRQSSQSLQEQEAYAV HPSNFVPAVRSYPVTQPEKAQPPCYYGAHGLWRTTEQEATVTPKQEFQHFSPPTGASGIPTSYS AYYNISVAKAELLNKLKQQPEMAEAGLGEEGVDYELAQKKIQLIESISRKLSVLREAQRGLLDD INANAALGEEVEVNLKAVCKSNELEKYHLFIGDLDKVVNLLLSLSGRLARVENALNSIDAESNQ EKLVLREKKQQLTNQLADAKELKEHVDRREKLVFSMVSRYLPQDQLQDYQHFVKMKSALIIEQR ELEEKIKLGEEQLKCLKESLHLGPSNF hide sequence

RefSeq Acc Id:	XP_017457554 ⟸ XM_017602065
- Peptide Label:	isoform X1
- UniProtKB:	A6KPC0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRTGDELVNINGTPLYGSRQEALILIKGSFRILKLIVRRRNTPVSRPHSWHVAKLLEGCPDVAT TMHFPSEAFSLSWHSGCNTSDVSVQWCPLSRHCSTEKSSSIGSMESLEQPGQATYEGHLLPIEQ NMYPSQRDSAYSSFSASSNASDCALSLKPEEPPSTDCVMSGPGPTKVTDDQANVSETSGSSHST SGGHMTSTSHASSCSEEGHHSGPAKMVRGPPEPPVRRDSLQASRAQLLNGEQHRASEPVDSLQQ KEKPALETMLPPRSSNQFCCISGQDQVTGEDHQNCELSKPSESSQDDCDHLLIEGSSKALDSPK AHDKGSNKEFGLLKEASADLANTLSFGAIPHLRGSIEHRHSAPEQLLASHLQQMHLDSRGNKGM ELPTGQDGHQWTMSPLHNNPKGKKSPGLPTGGTQDQTSKERKIKPTDDKLMVSANQSQSDALLG EVDGHPSERTYLDSNRASRASSDLTGQQPSATCSPVQQTRDFFSANKVVGHTEATEEGDNEPKE GGRLGGRRSGGPRGRSIQNRRKSERFATNLRNEIQRRKAQLQKSKGPLSQLCDTKEDVEETQEP PESPPLPASNSSLLPSYKNVPSHGDQLFNKSMILRARSSECLSQASESSKARVGLEGRMSPGQR SGQSSLALNTWWKASDSSTLDTEKANAHHGVCRGHWRWSPEHNAQPQVALSTEGPSNPDDNKEL KIPTPQAGDEAILMPFADRRKFFEESSKSLSTSHLPGLTTHNKPFIQRPKPIDQNFQSVSYREL RCHPMDQSYHSADQPYHAADQSYHSLSPLQSEAPTYPDCFAPKGVDNSLYCKPVHHGDCDYHRT CSHPCSAQGTVMHDPCICCSGEICPALLKRNLLPKCHNCRCHHHQCIRCTGCCHSPQHGAHEDS SMASGNAWKSRKAAIQEFPVDKWKPITGNRKTSHSGREMAHSKANLSLSAPFRPHIENSALDLS NYRAVSSLDLLGDFKHASNTPEESSVYEDESSVASMPRPLRSRAFSESHISLEPQNTRAWGKQQ RESFSKGSETQPDTLGARKKAFPPPRPPPPNWEKYRLFRAAQQQQQQQQQQQQQQQQQQQQCEK EEEEEKEQEEKGEKEEDLPPQYFSSETTGSCAPITEEQPQSLKMGHQEASRQSSQSLQEQEAYA VHPSNFVPAVRSYPVTQPEKAQPPCYYGAHGLWRTTEQEATVTPKQEFQHFSPPTGASGIPTSY SAYYNISVAKAELLNKLKQQPEMAEAGLGEEGVDYELAQKKIQLIESISRKLSVLREAQRGLLD DINANAALGEEVEVNLKAVCKSNELEKYHLFIGDLDKVVNLLLSLSGRLARVENALNSIDAESN QEKLVLREKKQQLTNQLADAKELKEHVDRREKLVFSMVSRYLPQDQLQDYQHFVKMKSALIIEQ RELEEKIKLGEEQLKCLKESLHLGPSNF hide sequence

Ensembl Acc Id:

ENSRNOP00000003971 ⟸ ENSRNOT00000003971

RefSeq Acc Id:	XP_038955724 ⟸ XM_039099796
- Peptide Label:	isoform X1
- UniProtKB:	A6KPC0 (UniProtKB/TrEMBL)

Protein Domains

ASD2 PDZ

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LVL5-F1-model_v2	AlphaFold	F1LVL5	1-1487	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701754

Promoter ID:

EPDNEW_R12278

Type:

single initiation site

Name:

Shroom4_1

Description:

shroom family member 4

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	16,929,931 - 16,929,991	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563434	AgrOrtholog
BioCyc Gene	G2FUF-2872	BioCyc
Ensembl Genes	ENSRNOG00000002959	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000003971	ENTREZGENE
	ENSRNOT00000003971.9	UniProtKB/TrEMBL
Gene3D-CATH	2.30.42.10	UniProtKB/TrEMBL
	6.10.250.3120	UniProtKB/TrEMBL
InterPro	ASD2	UniProtKB/TrEMBL
	PDZ/DHR/GLGF	UniProtKB/TrEMBL
	PDZ_sf	UniProtKB/TrEMBL
	Shroom_fam	UniProtKB/TrEMBL
KEGG Report	rno:317391	UniProtKB/TrEMBL
NCBI Gene	317391	ENTREZGENE
PANTHER	PTHR15012	UniProtKB/TrEMBL
	PTHR15012:SF35	UniProtKB/TrEMBL
Pfam	ASD2	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
PhenoGen	Shroom4	PhenoGen
PROSITE	ASD2	UniProtKB/TrEMBL
	PDZ	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000002959	RatGTEx
SMART	PDZ	UniProtKB/TrEMBL
Superfamily-SCOP	PDZ	UniProtKB/TrEMBL
UniProt	A6KPC0	ENTREZGENE, UniProtKB/TrEMBL
	F1LVL5	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Shroom4	shroom family member 4	RGD1563434_predicted	similar to mKIAA1202 protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1563434_predicted	similar to mKIAA1202 protein (predicted)	LOC317391	similar to mKIAA1202 protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC317391	similar to mKIAA1202 protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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