Advanced Search (OLGA)

Gene: Micu3 (mitochondrial calcium uptake 3) Rattus norvegicus

Analyze

Symbol:

Micu3

Name:

mitochondrial calcium uptake 3 (Ensembl:mitochondrial calcium uptake family, member 3)

RGD ID:

1563411

Description:

Enables calcium ion sensor activity. Involved in calcium import into the mitochondrion. Acts upstream of with a positive effect on positive regulation of neurotransmitter secretion. Predicted to be located in mitochondrial inner membrane and mitochondrial intermembrane space. Predicted to be part of uniplex complex. Predicted to be active in mitochondrion. Orthologous to human MICU3 (mitochondrial calcium uptake family member 3); INTERACTS WITH 1,3-dinitrobenzene; 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

calcium uptake protein 3, mitochondrial; EF hand domain family, member A2; EF-hand domain-containing family member A2; Efha2; mitochondrial calcium uptake family, member 3; mitochondrial uptake family, member 3

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	MICU3 (mitochondrial calcium uptake 3)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Micu3 (mitochondrial calcium uptake family, member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Micu3 (mitochondrial calcium uptake family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	MICU3 (mitochondrial calcium uptake family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	MICU3 (mitochondrial calcium uptake family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Micu3 (mitochondrial calcium uptake 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	MICU3 (mitochondrial calcium uptake family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	MICU3 (mitochondrial calcium uptake 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Micu3 (mitochondrial calcium uptake 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Micu3 (mitochondrial calcium uptake family member 3)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	TLR1 (toll like receptor 1)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	MICU3 (mitochondrial calcium uptake 3)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	MICU3 (mitochondrial calcium uptake 3)	Alliance	DIOPT (HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Micu3 (mitochondrial calcium uptake family, member 3)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Micu3 (mitochondrial calcium uptake family, member 3)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	micu3a (mitochondrial calcium uptake family, member 3a)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	micu3a (mitochondrial calcium uptake family, member 3a)	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	micu3b (mitochondrial calcium uptake family, member 3b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C56A3.6	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C56A3.6	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4662	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG4662	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	micu3	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	micu3	Alliance	DIOPT (OrthoFinder\|PANTHER)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	58,624,702 - 58,714,302 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	58,629,208 - 58,714,045 (-)	Ensembl				GRCr8
mRatBN7.2	16	51,919,859 - 52,010,705 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	51,925,225 - 52,010,613 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	57,240,517 - 57,324,561 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	60,642,301 - 60,729,427 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	55,874,474 - 55,958,515 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	55,043,051 - 55,133,080 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	55,045,619 - 55,132,191 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	54,745,644 - 54,836,393 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	55,273,828 - 55,364,898 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	49,813,766 - 49,900,204 (-)	NCBI		Celera
Cytogenetic Map	16	q12.1	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

1,3-dinitrobenzene (EXP)

17beta-estradiol (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

arsenite(3-) (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

CGP 52608 (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

ethanol (ISO)

fonofos (ISO)

indometacin (ISO)

leflunomide (ISO)

methoxychlor (EXP)

nickel atom (ISO)

ochratoxin A (EXP)

okadaic acid (ISO)

parathion (ISO)

perfluorooctane-1-sulfonic acid (ISO)

phorone (EXP)

poly(I:C) (EXP)

potassium chromate (ISO)

SB 431542 (ISO)

sunitinib (ISO)

terbufos (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

calcium import into the mitochondrion (IBA,IDA,IEA,ISO)

cellular response to calcium ion (IEA,ISO)

mitochondrial calcium ion homeostasis (IBA)

mitochondrial calcium ion transmembrane transport (IEA)

positive regulation of neurotransmitter secretion (IDA)

Cellular Component

mitochondrial inner membrane (IEA)

mitochondrial intermembrane space (IEA)

mitochondrion (IEA,ISO)

uniplex complex (IBA)

Molecular Function

calcium ion binding (IBA,IEA)

calcium ion sensor activity (IDA,IEA,ISO)

metal ion binding (IEA)

protein heterodimerization activity (IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Molecular Tuning of the Axonal Mitochondrial Ca2+ Uniporter Ensures Metabolic Flexibility of Neurotransmission.	Ashrafi G, etal., Neuron. 2020 Feb 19;105(4):678-687.e5. doi: 10.1016/j.neuron.2019.11.020. Epub 2019 Dec 17.
2.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
3.	GOA pipeline	RGD automated data pipeline
4.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Additional References at PubMed

PMID:34800366	PMID:36549422

Genomics

Comparative Map Data

Micu3
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	16	58,624,702 - 58,714,302 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	16	58,629,208 - 58,714,045 (-)	Ensembl				GRCr8
mRatBN7.2	16	51,919,859 - 52,010,705 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	16	51,925,225 - 52,010,613 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	16	57,240,517 - 57,324,561 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	16	60,642,301 - 60,729,427 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	16	55,874,474 - 55,958,515 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	16	55,043,051 - 55,133,080 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	16	55,045,619 - 55,132,191 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	16	54,745,644 - 54,836,393 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	16	55,273,828 - 55,364,898 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	16	49,813,766 - 49,900,204 (-)	NCBI		Celera
Cytogenetic Map	16	q12.1	NCBI

MICU3
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	8	17,027,238 - 17,138,640 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	8	17,026,877 - 17,125,880 (+)	Ensembl			hg38	GRCh38
GRCh37	8	16,884,747 - 16,996,149 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	8	16,929,119 - 17,024,518 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	8	16,929,118 - 17,024,514	NCBI
Celera	8	15,850,940 - 15,946,342 (+)	NCBI		Celera
Cytogenetic Map	8	p22	NCBI
HuRef	8	15,429,746 - 15,525,144 (+)	NCBI		HuRef
CHM1_1	8	17,086,214 - 17,181,293 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	8	17,295,130 - 17,406,209 (+)	NCBI		T2T-CHM13v2.0

Micu3
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	8	40,760,394 - 40,841,824 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	8	40,760,499 - 40,839,349 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	8	40,307,438 - 40,388,782 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	8	40,307,458 - 40,386,308 (+)	Ensembl			mm10	GRCm38
MGSCv37	8	41,393,405 - 41,471,658 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	8	41,833,478 - 41,880,994 (+)	NCBI		MGSCv36	mm8
MGSCv36	8	39,496,178 - 39,544,129 (+)	NCBI		MGSCv36	mm8
Celera	8	42,965,647 - 43,037,788 (+)	NCBI		Celera
Cytogenetic Map	8	A4	NCBI
cM Map	8	23.89	NCBI

Micu3
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955463	417,199 - 473,066 (-)	Ensembl
ChiLan1.0	NW_004955463	413,285 - 511,590 (-)	NCBI	ChiLan1.0	ChiLan1.0

MICU3
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	7	35,487,856 - 35,582,506 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	8	11,222,414 - 11,317,116 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	8	16,240,845 - 16,335,601 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	8	13,186,459 - 13,281,111 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	8	13,186,498 - 13,277,247 (+)	Ensembl			panPan2	panpan1.1

MICU3
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	16	40,362,572 - 40,457,665 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	16	40,362,587 - 40,453,174 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	16	40,860,821 - 40,956,225 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	16	42,416,208 - 42,511,912 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	16	42,416,228 - 42,510,946 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	16	40,509,913 - 40,605,317 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	16	41,053,137 - 41,148,546 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	16	41,246,372 - 41,342,091 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Micu3
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404943	38,964,131 - 39,060,625 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936573	6,081,808 - 6,174,523 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936573	6,081,811 - 6,178,812 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

MICU3
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	17	4,721,164 - 4,823,695 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	17	4,720,918 - 4,827,996 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	17	5,115,163 - 5,222,230 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

MICU3
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	8	15,113,526 - 15,207,190 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666052	27,074,066 - 27,166,646 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Micu3
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624769	22,194,462 - 22,310,598 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624769	22,175,069 - 22,310,970 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Micu3
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	13	47,096,458 - 47,184,934 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Micu3
967 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	199
Count of miRNA genes:	125
Interacting mature miRNAs:	164
Transcripts:	ENSRNOT00000017025
Prediction methods:	Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2300163	Bmd64	Bone mineral density QTL 64	5.3	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	16	44455123	89455123	Rat
70215	Niddm29	Non-insulin dependent diabetes mellitus QTL 29	3.54		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	16	36928782	81928782	Rat
1578768	Stresp22	Stress response QTL 22	2.8		thymus mass (VT:0004954)	thymus wet weight (CMO:0000855)	16	41992064	86992064	Rat
737826	Alc11	Alcohol consumption QTL 11	3.2		consumption behavior trait (VT:0002069)	ethanol drink intake rate (CMO:0001407)	16	4234212	66955197	Rat
2302057	Pia29	Pristane induced arthritis QTL 29	3.6	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	16	28468701	73468701	Rat
7205510	Activ5	Activity QTL 5	3.78	0.00028	locomotor behavior trait (VT:0001392)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	16	49099196	91442908	Rat
1357403	Slep4	Serum leptin concentration QTL 4	3.91		blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	32361043	77361043	Rat
8694453	Bw172	Body weight QTL 172	8.33	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	16	31058039	76058039	Rat
1298529	Arunc1	Aerobic running capacity QTL 1	4		exercise endurance trait (VT:0002332)	longest distance run on treadmill (CMO:0001406)	16	34398294	79398294	Rat
2312663	Slep9	Serum leptin concentration QTL 9		0.001	blood leptin amount (VT:0005667)	serum leptin level (CMO:0000780)	16	839086	66195506	Rat
2312660	Bw95	Body weight QTL 95		0.05	inguinal fat pad mass (VT:0010424)	inguinal fat pad weight to body weight ratio (CMO:0001253)	16	839086	66195506	Rat
6903294	Stl30	Serum triglyceride level QTL 30	2.6	0.0013	blood triglyceride amount (VT:0002644)	plasma triglyceride level (CMO:0000548)	16	31885271	76885271	Rat
2293690	Bss45	Bone structure and strength QTL 45	5.13	0.0001	lumbar vertebra morphology trait (VT:0010494)	lumbar vertebra cortical cross-sectional area (CMO:0001690)	16	44455123	89455123	Rat
2312666	Insul16	Insulin level QTL 16		0.01	blood insulin amount (VT:0001560)	serum insulin level (CMO:0000358)	16	839086	66195506	Rat
70205	Gcr3	Gastric cancer resistance QTL 3	2.3		stomach morphology trait (VT:0000470)	stomach tumor diameter (CMO:0001889)	16	17730818	72536785	Rat
2301406	Kidm39	Kidney mass QTL 39		0.002	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	16	15905802	60905802	Rat
2312669	Stl23	Serum triglyceride level QTL 23		0.01	blood triglyceride amount (VT:0002644)	serum triglyceride level (CMO:0000360)	16	839086	66195506	Rat

Markers in Region

RH131756

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	16	51,922,076 - 51,922,287 (+)	MAPPER	mRatBN7.2
Rnor_6.0	16	55,044,434 - 55,044,644	NCBI	Rnor6.0
Rnor_5.0	16	54,747,027 - 54,747,237	UniSTS	Rnor5.0
RGSC_v3.4	16	55,272,643 - 55,272,853	UniSTS	RGSC3.4
Celera	16	49,812,581 - 49,812,791	UniSTS
Cytogenetic Map	16	q12.1	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	163	91	90	59	90	59	6	353	190	11	142	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191892	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436584	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436585	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001436586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006253200	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008771293	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039094721	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063275597	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC091318	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ212822	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000016	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017025 ⟹ ENSRNOP00000017025

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	58,629,208 - 58,714,045 (-)	Ensembl
mRatBN7.2 Ensembl	16	51,925,225 - 52,010,613 (-)	Ensembl
Rnor_6.0 Ensembl	16	55,045,619 - 55,132,191 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000098345 ⟹ ENSRNOP00000087041

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	58,629,208 - 58,714,045 (-)	Ensembl
mRatBN7.2 Ensembl	16	51,925,225 - 52,010,613 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099337 ⟹ ENSRNOP00000088716

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	58,629,208 - 58,714,045 (-)	Ensembl
mRatBN7.2 Ensembl	16	51,925,225 - 52,010,613 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000102161 ⟹ ENSRNOP00000082387

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	16	58,629,208 - 58,714,045 (-)	Ensembl
mRatBN7.2 Ensembl	16	51,925,225 - 52,010,613 (-)	Ensembl

RefSeq Acc Id:

NM_001191892 ⟹ NP_001178821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,626,718 - 58,713,846 (-)	NCBI
mRatBN7.2	16	51,923,262 - 52,010,396 (-)	NCBI
Rnor_6.0	16	55,045,619 - 55,132,191 (-)	NCBI
Rnor_5.0	16	54,745,644 - 54,836,393 (-)	NCBI
Celera	16	49,813,766 - 49,900,204 (-)	NCBI

Sequence:

show sequence

ATGGCTGCGCTGCGGAGGCTTCTGTGGCCGCCGCCTCGGCTTTCGCCGACGCTCGCCCCTCAGC
AGCCATTCCTCTCGCCATGGGGGCGGCCTGCGGGGACGGCTCCGGGGATGTCGGGTCGGCCCTT
CTCCGGCCGGGAAGAGGACGAGGGGGCCGTAGCGGAGGCGGCGTGGCGGCGGCGGCGCTGGGGT
GAGCTGAGCATCGCGGCGGCAGCGGGCGGGGGGCTGGTCGGCCTTGTGTGCTACCAGCTGTATG
GGGACCCCAGAGCCGACCCCTCGGAGCTAGTGGCCCCAGAGCTGGACGAATCGCCCCGCGGCAG
GGGGCTGCTGCCCATCCCGGTGGCTGCTGCCAAGGAGACGGTTGCTACTGGCAGAGCCGTTACT
GAAGACTTGGACCTCTATGCTACATCTCGAGAGAGACGGTTTCGTTTATTTGCATCTATAGAAT
GTGAAGGACAGTTATTCATGACTCCATATGATTTTATTCTGGCTGTTACAACAGATGAGCCCAA
ATTTGCTAAAACGTGGAAGTCACTTTCTAAACAGGAATTAAGTCAGATGCTTTCAGAAACTCCA
CCAGTTTGGAAGGGATCATCAAAGCTTTTTCGAAATCTTAAAGAAAGAGGTGTGATTTCTTACA
CGGAATATCTTTTTCTTTTATGTATTTTAACAAAGCCCCATGCAGGTTTTAGAATAGCTTTCAA
CATGTTTGACACTGACGGAAACGAGATGGTGGATAAAAAAGAATTTTTGGTGCGTCTTCAACTT
TATGGATACCATTCTCCTACTAATAGTGTACTTAAACCAGATGCTGAGGAACTTGTCTCCAGAA
GCTACTGGGATACCCTGAGACGTAGCACAAGCCAGGCGCTCTTCTCAGACCTTGCAGAGCGTGC
TGATGACATCACAAGCTTAGTAGCAGATACTACACTTCTTGTACACTTTTTTGGAAAGAAAGGA
AAAGCTGAGCTCAACTTTGAAGATTTTTATAGATTTATGGATAATCTACAAACAGAAGTTCTAG
AAATAGAATTTCTTTCCTACTCTAATGGAATGAATACTATCAGTGAAGAAGATTTTGCCCATAT
TCTTCTACGGTATACTAATGTGGAAAATACATCAGTGTTTTTGGAAAATGTGCGCTACAGTATA
CCTGAAGAAAAGGGTATCACATTTGATGAATTCAGGTCATTTTTCCAGTTTCTAAACAACTTAG
AAGACTTTGCAATAGCTCTCAATATGTATAACTTTGCAAGCCGTTCTATAGGACAAGATGAATT
TAAACGTGCTGTATACGTAGCTACGGGACTGAAACTTTCACCACATTTGGTGAACACTGTCTTC
AAGATTTTCGATGTTGACAAAGATGACCAATTAAGTTATAAAGAATTTATTGGGATTATGAAAG
ACAGACTCCACAGAGGGTTCCGGGGTTATAAAACAGTCCAGAAGTATCCGACTTTCAAATCCTG
CCTGAAAAAGGAACTTCATAGCAGATAAATCCTCCTAAACAAGAATTGGAAGAATATAATCTAT
GTGACTAGGCAAGGAGCAAGATTTTGAGTGGATCCAATATAAAGTCAGAGCATGCAGAAAATAA
AAGGAATGTGGAATGCTCTGAAATGTACATCTTTTTCCTTGAACGGAGTTTATCAACATCAGAG
GAAAACTTCGTCTTGTAACTACAAGCATTAACGGGGACTGAGCCCGAGCACCACCAGAGAAACC
TGCTGCAAACACTGAGTGTAATCACTGAGCTTTCGCCTTGACTGACTGCTCTGAACTCTTCATT
CCCTAACATGGGTAGTCCCGATGACCATCTGAGAATATTTAGATTGTTTATTTATTAGAAACGT
CCTTTATTT

hide sequence

RefSeq Acc Id:

XM_006253200 ⟹ XP_006253262

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,624,702 - 58,714,302 (-)	NCBI
mRatBN7.2	16	51,919,859 - 52,010,691 (-)	NCBI
Rnor_6.0	16	55,043,051 - 55,133,080 (-)	NCBI
Rnor_5.0	16	54,745,644 - 54,836,393 (-)	NCBI

Sequence:

show sequence

GGTGTAATGGTCATGGTTAGAATTTTACTGGCCTTGGTGTTAGAATATATATGTGCATCGCTAA
AAATTTGGTTACTGCCAACAAAGAGATACCTGAGAACAAAGGGTCATGTGACCATCAGGCCAGG
GACTTGTGGCAGTGGATAATGGTGAACTTCCTTATGGGACTGTGAGAACTGAGATTGAAGGCTC
TATCTAATGTGCTAGCTCCTAAAAATCTCAAAATCTCAGGACTTGTTTTTGAATTAATCCTTCT
CCACGATCAACTTCCTCCTTTGATTCTTTCCATTTTTCCCCTTTGGCCTCCTCTACATTGAGCA
ATGGTTCTCAGGTATACTAGTGTTTCCTAAAAATATTAACACTAATTATAAATCATTAGCCTGT
CTTTGCCCAAAGTCCAGAAGCCATCCTTATGTAGCCCACAAATATTAATTCAGAACTGCGGTCT
TTATGACTTGAAGCAAACATCAGCATGCAACCACAGAGCACTCGGACCGTGTAAGGATCCAGCA
CGGAGCAGAACACAGAGAGCAGCCGGGCCTCTCTCCGAGGGGCGCCGAGTCACCCCGCAGCCTC
GGCTCCTGGAGTTCCGCCGGCCAGCGGTTCACGGGTGTTGGGCTCCCTTGCTAGTTGCCGTGGC
TACGGGCACTGTCCTCTACTACTGCGTGGCGGGGCTGGGGAAGCACGATGGAGAACAGCCTGGA
CTTGGGCGGCCCTCGAGCTCTCTCCAACGTGCGCCTGTATCCAAAGGCTGCTCTCGGGTAAGCC
GGGTCCCGGCTACGGTCGACAGCTCGTCCGCTCCAAGCGCTAGCGCTGCTCCGACTTCTCGCGA
GATTTCAGACCGCCTCTCCCGCCCCCACTCCCCACGGCTGGGCCCGCAGCTCCCGCTATGGCTG
CGCTGCGGAGGCTTCTGTGGCCGCCGCCTCGGCTTTCGCCGACGCTCGCCCCTCAGCAGCCATT
CCTCTCGCCATGGGGGCGGCCTGCGGGGACGGCTCCGGGGATGTCGGGTCGGCCCTTCTCCGGC
CGGGAAGAGGACGAGGGGGCCGTAGCGGAGGCGGCGTGGCGGCGGCGGCGCTGGGGTGAGCTGA
GCATCGCGGCGGCAGCGGGCGGGGGGCTGGTCGGCCTTGTGTGCTACCAGCTGTATGGGGACCC
CAGAGCCGACCCCTCGGAGCTAGTGGCCCCAGAGCTGGACGAATCGCCCCGCGGCAGGGGGCTG
CTGCCCATCCCGGTGGCTGCTGCCAAGGAGACGGTTGCTACTGGCAGAGCCGTTACTGAAGACT
TGGACCTCTATGCTACATCTCGAGAGAGACGGTTTCGTTTATTTGCATCTATAGAATGTGAAGG
ACAGTTATTCATGACTCCATATGATTTTATTCTGGCTGTTACAACAGATGAGCCCAAATTTGCT
AAAACGTGGAAGTCACTTTCTAAACAGGAATTAAGTCAGATGCTTTCAGAAACTCCACCAGTTT
GGAAGGGATCATCAAAGCTTTTTCGAAATCTTAAAGAAAGAGGTGTGATTTCTTACACGGAATA
TCTTTTTCTTTTATGTATTTTAACAAAGCCCCATGCAGGTTTTAGAATAGCTTTCAACATGTTT
GACACTGACGGAAACGAGATGGTGGATAAAAAAGAATTTTTGGTGCTTCAAGAGATATTCAGGA
AAAAAAATGAAAAGAGAGAAACTAAAGGAGATGAAGAAAAACGTGCAATGCTGCGTCTTCAACT
TTATGGATACCATTCTCCTACTAATAGTGTACTTAAACCAGATGCTGAGGAACTTGTCTCCAGA
AGCTACTGGGATACCCTGAGACGTAGCACAAGCCAGGCGCTCTTCTCAGACCTTGCAGAGCGTG
CTGATGACATCACAAGCTTAGTAGCAGATACTACACTTCTTGTACACTTTTTTGGAAAGAAAGG
AAAAGCTGAGCTCAACTTTGAAGATTTTTATAGATTTATGGATAATCTACAAACAGAAGTTCTA
GAAATAGAATTTCTTTCCTACTCTAATGGAATGAATACTATCAGTGAAGAAGATTTTGCCCATA
TTCTTCTACGGTATACTAATGTGGAAAATACATCAGTGTTTTTGGAAAATGTGCGCTACAGTAT
ACCTGAAGAAAAGGGTATCACATTTGATGAATTCAGGTCATTTTTCCAGTTTCTAAACAACTTA
GAAGACTTTGCAATAGCTCTCAATATGTATAACTTTGCAAGCCGTTCTATAGGACAAGATGAAT
TTAAACGTGCTGTATACGTAGCTACGGGACTGAAACTTTCACCACATTTGGTGAACACTGTCTT
CAAGATTTTCGATGTTGACAAAGATGACCAATTAAGTTATAAAGAATTTATTGGGATTATGAAA
GACAGACTCCACAGAGGGTTCCGGGGTTATAAAACAGTCCAGAAGTATCCGACTTTCAAATCCT
GCCTGAAAAAGGAACTTCATAGCAGATAAATCCTCCTAAACAAGAATTGGAAGAATATAATCTA
TGTGACTAGGCAAGGAGCAAGATTTTGAGTGGATCCAATATAAAGTCAGAGCATGCAGAAAATA
AAAGGAATGTGGAATGCTCTGAAATGTACATCTTTTTCCTTGAACGGAGTTTATCAACATCAGA
GGAAAACTTCGTCTTGTAACTACAAGCATTAACGGGGACTGAGCCCGAGCACCACCAGAGAAAC
CTGCTGCAAACACTGAGTGTAATCACTGAGCTTTCGCCTTGACTGACTGCTCTGAACTCTTCAT
TCCCTAACATGGGTAGTCCCGATGACCATCTGAGAATATTTAGATTGTTTATTTATTAGAAACG
TCCTTTATTTCAGAATAATTTATGAATGATGACTATAGATGGAAACACATTTCTTCAGTTTGCA
CTGTGAGCGTGTGTTCATACAGTGAGTATTGCTTCAGGCTTGTCTTGGGCCCTTCATTGTTGTA
AGTATTTGTTATTTATCTTGTATTTAATTATACTGAAGTAATTTCAGAAAACAAGTGAGAATTT
ACTAAGCAATAGGATGATGGTTTACATTGTACTTTCAGCTTTTAAAAGTACTTATGTAATATAC
ATTGTTGGATTTATGTAAATTTTTGTTTTTGCCGTTCTTTGTGTGTCTTGTCTTGTTTTGTTTT
TGTACCAAAGCCAACAGGAATTCAGGTATTTTATTTTAAAAGAAATTTAGATTTTCTTTCTAAG
AAAACACAGCAGCCGTGTGCTGGTGTTAGAAGCAAGAAGAGTGGTAGTAGTAATCACCATCGTG
AGGTTCCTAGTCACAGGAGTGACATGGAAACAAGATCAGTAACATAGTGGATATTATTAATATA
TGTTAGTAGCATCAAAACTAATATAGTTGGCCTAGAAGGTTGATGTATATTTATTTGATAGAAG
ATAATGTTTTGTTTCTTGAAAAAAGGACCACATGCAAAATTGATCCAAACAGTCAGTAGTGATT
AATCATTTATAACTAATCCATTACATCGAAATAATATGTCTTAAAAGAGAAAATAAAACTTTCT
CTTGAAAAACCCCACTTGAGAGACTGGCCAGCATGGGTCACAACTCAAAGTCTGCCTGGGCTGT
AGTGTACGCTCAAGCCACCCTGGCCACTTAGAAGAAGAAAAAGTGTAGCTTAGTGGTGGAGGGT
TTGCCTGCCATGTGTGAGGCCTCAGGTTTAATTCCCAACTCTGAAAAAGAAGGGGAAGGGGAAG
AAAGAAAAAGAGATCCTAGATTTTCACATTGAAAAATAATTTTAGAATATTTAATAGAACTTTG
GCTACATGATAAAACTGATTTATACAAGGGTACTATAAATAACGCAATGAGTTTTAAGCTAATA
TATTTATGTATTGCATGTCAAAAGATTAATAGATTGATTTATCTTCTTTTATAAGATGTACATA
GTATAAATTGCATACACTCCAACCATTACTTTGCTTTTGCATCGGAAAATAGGAAACACTGGCT
TTATTTTAAGTTATTGAATGTGAAATTGGTCTGCATCAGCCTATTTGTAAAATGTTATTTTTGT
GTTATTAGTATTGATTATGTTTTTAGACCCTTCCACATTCTTTGTCTGATATTATTTATTGCAC
CAATAAAGAAATATAAATATGCAAATGCAGTAGAGTTATACTTACATAATTTCACCTGCTACAT
ACACATTTATCATGTCTTAGGCCTAGATTGTTCTTAGTAATACATGGTGTATAAAATCATTGAA
AAAATACAAATTAATCTTTGTCTATTAGGTATTTTATTACACATAATGGAAACCTTGTTGATAC
GGATTAAAAGTTAAATAACCTATTCAAAGATCCTTTGTAAGTATGTCAATGTCCCAAGAAAATA
ACATAATATATTCACAGCCACTGTCCCTTATTGCTTTATTGTGAAGCTGTTTATATATAAGGTG
GCAAAATAATATAAAAATGAGGGAAATAAAATACTCTGACCAATTAATAAGGTAAGAGAATGGT
GAGTGACAGTGGCTTCCCTCTCAGCACTCTTAAACTTTTCTGCCTATATAGTAGAGGTAGGGTA
TGGTTAAGTCAGTTGAAGTATTTTTGAATGTTTTCAAATAATGCACTAAATTCACAAATGTTAG
CTTCGAATTTTCCTTCTACAAATTACACAAATTTCACCAACATTAACCTCTGCATATAATTTTA
GTGTTATGCTTCTTGAAGAAAGCCTACATGGTAAACGGTATTTGGTACTTCTCAGAATAGTTTA
TAATAAATTATTTTAGCCTAAAATCTGATTGTTACTACAAAACTTAATTGTGAAGCTACATCTT
AATTGTTATATTATCTTAAAATAAATTTACATTTTGAATCAAGGAATTGCAGTTTGCTATTGAG
TATATCAGTGAACTAATTTTGTTCTGAAAATATCACTTTCTAAGGTGGGAAATCTTAGTGGGTT
ACCATTGATCCTAAACCCACTTTTGTAGTATACGTGCCATCAAACTCACGAAAATCTCAGTGGG
TACATACATTGCAGTCTTGGAGCCTTCTCAGAGCATTGCAGAGGTCCTTGTCTTATAGAACTGT
GTTAGTACTACAAAGATTTTCAGGAAGTTTACATGTGACTTAAGAGTCGTCTTGTTAAGAGAAC
ACCTAAAAATTATATTTTAAAGGTGTATTAGTTATTCTCTCCTGTTTTGTTTTGTCTTGGTCTT
AGTTTCATTAGACAGTCTGACTTTGTGGCCACAGATGATTCAAATTCCGTGGTTCAAGCAGTGC
TCTGGCCTAGGTCACCTGAGTTCTCAGAATGTCGGTGTATATCGCCACACCTCATCCCACCTCT
GCTATCAGTAAACAAACACTAAAGGGTGTGAAAATGTGAATCTTGTAATAGTAAGTAAAATAAA
ATCTTAAGTGTTCAAAAA

hide sequence

RefSeq Acc Id:

XM_008771293 ⟹ XP_008769515

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,624,702 - 58,714,302 (-)	NCBI
mRatBN7.2	16	51,919,859 - 52,010,691 (-)	NCBI
Rnor_6.0	16	55,043,051 - 55,133,079 (-)	NCBI

Sequence:

show sequence

GTGTAATGGTCATGGTTAGAATTTTACTGGCCTTGGTGTTAGAATATATATGTGCATCGCTAAA
AATTTGGTTACTGCCAACAAAGAGATACCTGAGAACAAAGGGTCATGTGACCATCAGGCCAGGG
ACTTGTGGCAGTGGATAATGGTGAACTTCCTTATGGGACTGTGAGAACTGAGATTGAAGGCTCT
ATCTAATGTGCTAGCTCCTAAAAATCTCAAAATCTCAGGACTTGTTTTTGAATTAATCCTTCTC
CACGATCAACTTCCTCCTTTGATTCTTTCCATTTTTCCCCTTTGGCCTCCTCTACATTGAGCAA
TGGTTCTCAGGTATACTAGTGTTTCCTAAAAATATTAACACTAATTATAAATCATTAGCCTGTC
TTTGCCCAAAGTCCAGAAGCCATCCTTATGTAGCCCACAAATATTAATTCAGAACTGCGGTCTT
TATGACTTGAAGCAAACATCAGCATGCAACCACAGAGCACTCGGACCGTGTAAGGATCCAGCAC
GGAGCAGAACACAGAGAGCAGCCGGGCCTCTCTCCGAGGGGCGCCGAGTCACCCCGCAGCCTCG
GCTCCTGGAGTTCCGCCGGCCAGCGGTTCACGGGTGTTGGGCTCCCTTGCTAGTTGCCGTGGCT
ACGGGCACTGTCCTCTACTACTGCGTGGCGGGGCTGGGGAAGCACGATGGAGAACAGCCTGGAC
TTGGGCGGCCCTCGAGCTCTCTCCAACGTGCGCCTGTATCCAAAGGCTGCTCTCGGGTAAGCCG
GGTCCCGGCTACGGTCGACAGCTCGTCCGCTCCAAGCGCTAGCGCTGCTCCGACTTCTCGCGAG
ATTTCAGACCGCCTCTCCCGCCCCCACTCCCCACGGCTGGGCCCGCAGCTCCCGCTATGGCTGC
GCTGCGGAGGCTTCTGTGGCCGCCGCCTCGGCTTTCGCCGACGCTCGCCCCTCAGCAGCCATTC
CTCTCGCCATGGGGGCGGCCTGCGGGGACGGCTCCGGGGATGTCGGGTCGGCCCTTCTCCGGCC
GGGAAGAGGACGAGGGGGCCGTAGCGGAGGCGGCGTGGCGGCGGCGGCGCTGGGGTGAGCTGAG
CATCGCGGCGGCAGCGGGCGGGGGGCTGGTCGGCCTTGTGTGCTACCAGCTGTATGGGGACCCC
AGAGCCGACCCCTCGGAGCTAGTGGCCCCAGAGCTGGACGAATCGCCCCGCGGCAGGGGGCTGC
TGCCCATCCCGGTGGCTGCTGCCAAGGAGACGGTTGCTACTGGCAGAGCCGTTACTGAAGACTT
GGACCTCTATGCTACATCTCGAGAGAGACGGTTTCGTTTATTTGCATCTATAGAATGTGAAGGA
CAGTTATTCATGACTCCATATGATTTTATTCTGGCTGTTACAACAGATGAGCCCAAATTTGCTA
AAACGTGGAAGTCACTTTCTAAACAGGAATTAAGTCAGATGCTTTCAGAAACTCCACCAGTTTG
GAAGGGATCATCAAAGCTTTTTCGAAATCTTAAAGAAAGAGGTGTGATTTCTTACACGGAATAT
CTTTTTCTTTTATGTATTTTAACAAAGCCCCATGCAGGTTTTAGAATAGCTTTCAACATGTTTG
ACACTGACGGAAACGAGATGGTGGATAAAAAAGAATTTTTGGTGCTTCAAGAGATATTCAGGAA
AAAAAATGAAAAGAGAGAAACTAAAGGAGATGAAGAAAAACGTGCAATGCTGGTACTTAAACCA
GATGCTGAGGAACTTGTCTCCAGAAGCTACTGGGATACCCTGAGACGTAGCACAAGCCAGGCGC
TCTTCTCAGACCTTGCAGAGCGTGCTGATGACATCACAAGCTTAGTAGCAGATACTACACTTCT
TGTACACTTTTTTGGAAAGAAAGGAAAAGCTGAGCTCAACTTTGAAGATTTTTATAGATTTATG
GATAATCTACAAACAGAAGTTCTAGAAATAGAATTTCTTTCCTACTCTAATGGAATGAATACTA
TCAGTGAAGAAGATTTTGCCCATATTCTTCTACGGTATACTAATGTGGAAAATACATCAGTGTT
TTTGGAAAATGTGCGCTACAGTATACCTGAAGAAAAGGGTATCACATTTGATGAATTCAGGTCA
TTTTTCCAGTTTCTAAACAACTTAGAAGACTTTGCAATAGCTCTCAATATGTATAACTTTGCAA
GCCGTTCTATAGGACAAGATGAATTTAAACGTGCTGTATACGTAGCTACGGGACTGAAACTTTC
ACCACATTTGGTGAACACTGTCTTCAAGATTTTCGATGTTGACAAAGATGACCAATTAAGTTAT
AAAGAATTTATTGGGATTATGAAAGACAGACTCCACAGAGGGTTCCGGGGTTATAAAACAGTCC
AGAAGTATCCGACTTTCAAATCCTGCCTGAAAAAGGAACTTCATAGCAGATAAATCCTCCTAAA
CAAGAATTGGAAGAATATAATCTATGTGACTAGGCAAGGAGCAAGATTTTGAGTGGATCCAATA
TAAAGTCAGAGCATGCAGAAAATAAAAGGAATGTGGAATGCTCTGAAATGTACATCTTTTTCCT
TGAACGGAGTTTATCAACATCAGAGGAAAACTTCGTCTTGTAACTACAAGCATTAACGGGGACT
GAGCCCGAGCACCACCAGAGAAACCTGCTGCAAACACTGAGTGTAATCACTGAGCTTTCGCCTT
GACTGACTGCTCTGAACTCTTCATTCCCTAACATGGGTAGTCCCGATGACCATCTGAGAATATT
TAGATTGTTTATTTATTAGAAACGTCCTTTATTTCAGAATAATTTATGAATGATGACTATAGAT
GGAAACACATTTCTTCAGTTTGCACTGTGAGCGTGTGTTCATACAGTGAGTATTGCTTCAGGCT
TGTCTTGGGCCCTTCATTGTTGTAAGTATTTGTTATTTATCTTGTATTTAATTATACTGAAGTA
ATTTCAGAAAACAAGTGAGAATTTACTAAGCAATAGGATGATGGTTTACATTGTACTTTCAGCT
TTTAAAAGTACTTATGTAATATACATTGTTGGATTTATGTAAATTTTTGTTTTTGCCGTTCTTT
GTGTGTCTTGTCTTGTTTTGTTTTTGTACCAAAGCCAACAGGAATTCAGGTATTTTATTTTAAA
AGAAATTTAGATTTTCTTTCTAAGAAAACACAGCAGCCGTGTGCTGGTGTTAGAAGCAAGAAGA
GTGGTAGTAGTAATCACCATCGTGAGGTTCCTAGTCACAGGAGTGACATGGAAACAAGATCAGT
AACATAGTGGATATTATTAATATATGTTAGTAGCATCAAAACTAATATAGTTGGCCTAGAAGGT
TGATGTATATTTATTTGATAGAAGATAATGTTTTGTTTCTTGAAAAAAGGACCACATGCAAAAT
TGATCCAAACAGTCAGTAGTGATTAATCATTTATAACTAATCCATTACATCGAAATAATATGTC
TTAAAAGAGAAAATAAAACTTTCTCTTGAAAAACCCCACTTGAGAGACTGGCCAGCATGGGTCA
CAACTCAAAGTCTGCCTGGGCTGTAGTGTACGCTCAAGCCACCCTGGCCACTTAGAAGAAGAAA
AAGTGTAGCTTAGTGGTGGAGGGTTTGCCTGCCATGTGTGAGGCCTCAGGTTTAATTCCCAACT
CTGAAAAAGAAGGGGAAGGGGAAGAAAGAAAAAGAGATCCTAGATTTTCACATTGAAAAATAAT
TTTAGAATATTTAATAGAACTTTGGCTACATGATAAAACTGATTTATACAAGGGTACTATAAAT
AACGCAATGAGTTTTAAGCTAATATATTTATGTATTGCATGTCAAAAGATTAATAGATTGATTT
ATCTTCTTTTATAAGATGTACATAGTATAAATTGCATACACTCCAACCATTACTTTGCTTTTGC
ATCGGAAAATAGGAAACACTGGCTTTATTTTAAGTTATTGAATGTGAAATTGGTCTGCATCAGC
CTATTTGTAAAATGTTATTTTTGTGTTATTAGTATTGATTATGTTTTTAGACCCTTCCACATTC
TTTGTCTGATATTATTTATTGCACCAATAAAGAAATATAAATATGCAAATGCAGTAGAGTTATA
CTTACATAATTTCACCTGCTACATACACATTTATCATGTCTTAGGCCTAGATTGTTCTTAGTAA
TACATGGTGTATAAAATCATTGAAAAAATACAAATTAATCTTTGTCTATTAGGTATTTTATTAC
ACATAATGGAAACCTTGTTGATACGGATTAAAAGTTAAATAACCTATTCAAAGATCCTTTGTAA
GTATGTCAATGTCCCAAGAAAATAACATAATATATTCACAGCCACTGTCCCTTATTGCTTTATT
GTGAAGCTGTTTATATATAAGGTGGCAAAATAATATAAAAATGAGGGAAATAAAATACTCTGAC
CAATTAATAAGGTAAGAGAATGGTGAGTGACAGTGGCTTCCCTCTCAGCACTCTTAAACTTTTC
TGCCTATATAGTAGAGGTAGGGTATGGTTAAGTCAGTTGAAGTATTTTTGAATGTTTTCAAATA
ATGCACTAAATTCACAAATGTTAGCTTCGAATTTTCCTTCTACAAATTACACAAATTTCACCAA
CATTAACCTCTGCATATAATTTTAGTGTTATGCTTCTTGAAGAAAGCCTACATGGTAAACGGTA
TTTGGTACTTCTCAGAATAGTTTATAATAAATTATTTTAGCCTAAAATCTGATTGTTACTACAA
AACTTAATTGTGAAGCTACATCTTAATTGTTATATTATCTTAAAATAAATTTACATTTTGAATC
AAGGAATTGCAGTTTGCTATTGAGTATATCAGTGAACTAATTTTGTTCTGAAAATATCACTTTC
TAAGGTGGGAAATCTTAGTGGGTTACCATTGATCCTAAACCCACTTTTGTAGTATACGTGCCAT
CAAACTCACGAAAATCTCAGTGGGTACATACATTGCAGTCTTGGAGCCTTCTCAGAGCATTGCA
GAGGTCCTTGTCTTATAGAACTGTGTTAGTACTACAAAGATTTTCAGGAAGTTTACATGTGACT
TAAGAGTCGTCTTGTTAAGAGAACACCTAAAAATTATATTTTAAAGGTGTATTAGTTATTCTCT
CCTGTTTTGTTTTGTCTTGGTCTTAGTTTCATTAGACAGTCTGACTTTGTGGCCACAGATGATT
CAAATTCCGTGGTTCAAGCAGTGCTCTGGCCTAGGTCACCTGAGTTCTCAGAATGTCGGTGTAT
ATCGCCACACCTCATCCCACCTCTGCTATCAGTAAACAAACACTAAAGGGTGTGAAAATGTGAA
TCTTGTAATAGTAAGTAAAATAAAATCTTAAGTGTTCAAAAA

hide sequence

RefSeq Acc Id:

XM_039094721 ⟹ XP_038950649

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,624,702 - 58,714,302 (-)	NCBI
mRatBN7.2	16	51,919,859 - 52,010,690 (-)	NCBI

RefSeq Acc Id:

XM_063275597 ⟹ XP_063131667

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	16	58,624,702 - 58,680,096 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001178821	(Get FASTA)	NCBI Sequence Viewer
	NP_001423513	(Get FASTA)	NCBI Sequence Viewer
	NP_001423514	(Get FASTA)	NCBI Sequence Viewer
	NP_001423515	(Get FASTA)	NCBI Sequence Viewer
	XP_006253262	(Get FASTA)	NCBI Sequence Viewer
	XP_008769515	(Get FASTA)	NCBI Sequence Viewer
	XP_038950649	(Get FASTA)	NCBI Sequence Viewer
	XP_063131667	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	A0A8I6A2H6	(Get FASTA)	NCBI Sequence Viewer
	AAH91318	(Get FASTA)	NCBI Sequence Viewer
	EDL78811	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000082387
	ENSRNOP00000087041
	ENSRNOP00000087041.1
	ENSRNOP00000088716
	ENSRNOP00055015834
	ENSRNOP00055015836
	ENSRNOP00055015838
	ENSRNOP00055015839

RefSeq Acc Id:

NP_001178821 ⟸ NM_001191892

- Sequence:

show sequence

MAALRRLLWPPPRLSPTLAPQQPFLSPWGRPAGTAPGMSGRPFSGREEDEGAVAEAAWRRRRWG
ELSIAAAAGGGLVGLVCYQLYGDPRADPSELVAPELDESPRGRGLLPIPVAAAKETVATGRAVT
EDLDLYATSRERRFRLFASIECEGQLFMTPYDFILAVTTDEPKFAKTWKSLSKQELSQMLSETP
PVWKGSSKLFRNLKERGVISYTEYLFLLCILTKPHAGFRIAFNMFDTDGNEMVDKKEFLVRLQL
YGYHSPTNSVLKPDAEELVSRSYWDTLRRSTSQALFSDLAERADDITSLVADTTLLVHFFGKKG
KAELNFEDFYRFMDNLQTEVLEIEFLSYSNGMNTISEEDFAHILLRYTNVENTSVFLENVRYSI
PEEKGITFDEFRSFFQFLNNLEDFAIALNMYNFASRSIGQDEFKRAVYVATGLKLSPHLVNTVF
KIFDVDKDDQLSYKEFIGIMKDRLHRGFRGYKTVQKYPTFKSCLKKELHSR

hide sequence

RefSeq Acc Id:

XP_006253262 ⟸ XM_006253200

- Peptide Label:

isoform X1

- Sequence:

show sequence

MAALRRLLWPPPRLSPTLAPQQPFLSPWGRPAGTAPGMSGRPFSGREEDEGAVAEAAWRRRRWG
ELSIAAAAGGGLVGLVCYQLYGDPRADPSELVAPELDESPRGRGLLPIPVAAAKETVATGRAVT
EDLDLYATSRERRFRLFASIECEGQLFMTPYDFILAVTTDEPKFAKTWKSLSKQELSQMLSETP
PVWKGSSKLFRNLKERGVISYTEYLFLLCILTKPHAGFRIAFNMFDTDGNEMVDKKEFLVLQEI
FRKKNEKRETKGDEEKRAMLRLQLYGYHSPTNSVLKPDAEELVSRSYWDTLRRSTSQALFSDLA
ERADDITSLVADTTLLVHFFGKKGKAELNFEDFYRFMDNLQTEVLEIEFLSYSNGMNTISEEDF
AHILLRYTNVENTSVFLENVRYSIPEEKGITFDEFRSFFQFLNNLEDFAIALNMYNFASRSIGQ
DEFKRAVYVATGLKLSPHLVNTVFKIFDVDKDDQLSYKEFIGIMKDRLHRGFRGYKTVQKYPTF
KSCLKKELHSR

hide sequence

RefSeq Acc Id:

XP_008769515 ⟸ XM_008771293

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAALRRLLWPPPRLSPTLAPQQPFLSPWGRPAGTAPGMSGRPFSGREEDEGAVAEAAWRRRRWG
ELSIAAAAGGGLVGLVCYQLYGDPRADPSELVAPELDESPRGRGLLPIPVAAAKETVATGRAVT
EDLDLYATSRERRFRLFASIECEGQLFMTPYDFILAVTTDEPKFAKTWKSLSKQELSQMLSETP
PVWKGSSKLFRNLKERGVISYTEYLFLLCILTKPHAGFRIAFNMFDTDGNEMVDKKEFLVLQEI
FRKKNEKRETKGDEEKRAMLVLKPDAEELVSRSYWDTLRRSTSQALFSDLAERADDITSLVADT
TLLVHFFGKKGKAELNFEDFYRFMDNLQTEVLEIEFLSYSNGMNTISEEDFAHILLRYTNVENT
SVFLENVRYSIPEEKGITFDEFRSFFQFLNNLEDFAIALNMYNFASRSIGQDEFKRAVYVATGL
KLSPHLVNTVFKIFDVDKDDQLSYKEFIGIMKDRLHRGFRGYKTVQKYPTFKSCLKKELHSR

hide sequence

Ensembl Acc Id:

ENSRNOP00000017025 ⟸ ENSRNOT00000017025

RefSeq Acc Id:	XP_038950649 ⟸ XM_039094721
- Peptide Label:	isoform X3

Ensembl Acc Id:

ENSRNOP00000087041 ⟸ ENSRNOT00000098345

Ensembl Acc Id:

ENSRNOP00000088716 ⟸ ENSRNOT00000099337

Ensembl Acc Id:

ENSRNOP00000082387 ⟸ ENSRNOT00000102161

RefSeq Acc Id:	XP_063131667 ⟸ XM_063275597
- Peptide Label:	isoform X4
- UniProtKB:	A6JPW1 (UniProtKB/TrEMBL)

Protein Domains

EF-hand

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZG95-F1-model_v2	AlphaFold	D3ZG95	1-499	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13700125

Promoter ID:

EPDNEW_R10649

Type:

single initiation site

Name:

Micu3_1

Description:

mitochondrial calcium uptake family, member 3

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	16	55,132,207 - 55,132,267	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563411	AgrOrtholog
BioCyc Gene	G2FUF-11241	BioCyc
Ensembl Genes	ENSRNOG00000012767	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
	ENSRNOG00055011565	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000098345	ENTREZGENE
	ENSRNOT00000098345.1	UniProtKB/Swiss-Prot
	ENSRNOT00000099337	ENTREZGENE
	ENSRNOT00000102161	ENTREZGENE
	ENSRNOT00055019639	UniProtKB/Swiss-Prot
	ENSRNOT00055019641	UniProtKB/Swiss-Prot
	ENSRNOT00055019643	UniProtKB/Swiss-Prot
	ENSRNOT00055019644	UniProtKB/Swiss-Prot
Gene3D-CATH	EF-hand	UniProtKB/Swiss-Prot
IMAGE_CLONE	IMAGE:7312992	IMAGE-MGC_LOAD
InterPro	EF-hand-dom_pair	UniProtKB/Swiss-Prot
	EF_Hand_1_Ca_BS	UniProtKB/Swiss-Prot
	EF_hand_dom	UniProtKB/Swiss-Prot
	MICU1/2/3	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109295	IMAGE-MGC_LOAD
NCBI Gene	364601	ENTREZGENE
PANTHER	CALCIUM UPTAKE PROTEIN 3, MITOCHONDRIAL	UniProtKB/Swiss-Prot
	EF HAND DOMAIN FAMILY A1,A2-RELATED	UniProtKB/Swiss-Prot
Pfam	EF-hand_7	UniProtKB/Swiss-Prot
PhenoGen	Micu3	PhenoGen
PROSITE	EF_HAND_1	UniProtKB/Swiss-Prot
	EF_HAND_2	UniProtKB/Swiss-Prot
RatGTEx	ENSRNOG00000012767	RatGTEx
	ENSRNOG00055011565	RatGTEx
SMART	EFh	UniProtKB/Swiss-Prot
Superfamily-SCOP	EF-hand	UniProtKB/Swiss-Prot
UniProt	A0A8I5ZTV9	ENTREZGENE
	A0A8I6A2H6	ENTREZGENE
	A0A8I6AA12	ENTREZGENE
	A0AAK3FFS0	ENTREZGENE, UniProtKB/TrEMBL
	A0AAK3H8H3	ENTREZGENE, UniProtKB/TrEMBL
	A0AAK3HSM7	ENTREZGENE, UniProtKB/TrEMBL
	A6JPW1	ENTREZGENE, UniProtKB/TrEMBL
	D3ZG95	ENTREZGENE
	MICU3_RAT	UniProtKB/Swiss-Prot
UniProt Secondary	A0A8I5ZTV9	UniProtKB/Swiss-Prot
	A0A8I6AA12	UniProtKB/Swiss-Prot
	D3ZG95	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2025-11-13	Micu3	mitochondrial calcium uptake 3	Micu3	mitochondrial calcium uptake family, member 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-04-04	Micu3	mitochondrial calcium uptake family, member 3	Micu3	mitochondrial uptake family, member 3	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2013-03-20	Micu3	mitochondrial uptake family, member 3	Efha2	EF hand domain family, member A2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	Efha2	EF hand domain family, member A2			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Send us a Message