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Gene: Cinp (cyclin-dependent kinase 2-interacting protein) Rattus norvegicus

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Symbol:

Cinp

Name:

cyclin-dependent kinase 2-interacting protein

RGD ID:

1563395

Description:

Predicted to enable preribosome binding activity. Predicted to be involved in ribosomal large subunit biogenesis. Orthologous to human CINP (cyclin dependent kinase 2 interacting protein); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; amitrole.

Type:

protein-coding

RefSeq Status:

PROVISIONAL

Previously known as:

LOC299334; RGD1563395; similar to cyclin-dependent kinase 2-interacting protein

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	135,698,477 - 135,720,798 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	135,706,793 - 135,720,689 (-)	Ensembl				GRCr8
mRatBN7.2	6	129,878,618 - 129,899,575 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	129,885,570 - 129,899,480 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	130,062,018 - 130,075,774 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	130,358,006 - 130,371,762 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	129,722,451 - 129,736,344 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	135,290,528 - 135,304,422 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	135,290,530 - 135,304,422 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	145,109,734 - 145,123,629 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	135,595,588 - 135,609,484 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	127,453,447 - 127,467,366 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

epilepsy (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

6-propyl-2-thiouracil (EXP)

amitrole (EXP)

arsane (ISO)

arsenic atom (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (EXP)

carbamazepine (ISO)

carbon nanotube (ISO)

chlordecone (ISO)

chlorpyrifos (EXP,ISO)

chromium(6+) (ISO)

copper(II) sulfate (ISO)

DDE (ISO)

dexamethasone (ISO)

diazinon (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

furan (EXP)

gentamycin (EXP)

glafenine (EXP)

indometacin (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

methimazole (EXP)

N,N-diethyl-m-toluamide (EXP)

nitrates (ISO)

permethrin (EXP)

pirinixic acid (ISO)

propiconazole (EXP)

sodium arsenate (ISO)

sodium arsenite (ISO)

sodium dichromate (EXP)

tetrachloromethane (EXP)

thioacetamide (EXP)

thiram (ISO)

trimellitic anhydride (ISO)

triphenyl phosphate (ISO)

valproic acid (ISO)

vanadyl sulfate (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

DNA replication (IEA,ISO)

regulation of ribosome biogenesis (IEA,ISO)

ribosomal large subunit biogenesis (IEA,ISO)

Cellular Component

nucleus (IEA,ISO)

Molecular Function

preribosome binding (IEA,ISO)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Cinp
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	135,698,477 - 135,720,798 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	135,706,793 - 135,720,689 (-)	Ensembl				GRCr8
mRatBN7.2	6	129,878,618 - 129,899,575 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	129,885,570 - 129,899,480 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	130,062,018 - 130,075,774 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	130,358,006 - 130,371,762 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	129,722,451 - 129,736,344 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	135,290,528 - 135,304,422 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	135,290,530 - 135,304,422 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	145,109,734 - 145,123,629 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	135,595,588 - 135,609,484 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	127,453,447 - 127,467,366 (-)	NCBI		Celera
Cytogenetic Map	6	q32	NCBI

CINP
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	14	102,348,282 - 102,362,890 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	14	102,341,102 - 102,362,916 (-)	Ensembl			hg38	GRCh38
GRCh37	14	102,814,619 - 102,829,227 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	14	101,884,372 - 101,899,006 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	14	82,869,127 - 82,883,762 (-)	NCBI		Celera
Cytogenetic Map	14	q32.31	NCBI
HuRef	14	82,991,712 - 83,006,254 (-)	NCBI		HuRef
CHM1_1	14	102,752,463 - 102,767,114 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	14	96,583,876 - 96,598,485 (-)	NCBI		T2T-CHM13v2.0

Cinp
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	110,839,044 - 110,855,579 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	110,839,044 - 110,855,579 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	110,872,610 - 110,889,145 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	110,872,610 - 110,889,145 (-)	Ensembl			mm10	GRCm38
MGSCv37	12	112,110,832 - 112,127,324 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	111,320,429 - 111,336,921 (-)	NCBI		MGSCv36	mm8
Celera	12	112,066,045 - 112,082,550 (-)	NCBI		Celera
Cytogenetic Map	12	F1	NCBI
cM Map	12	60.85	NCBI

Cinp
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955538	1,649,068 - 1,655,146 (-)	Ensembl
ChiLan1.0	NW_004955538	1,649,068 - 1,655,146 (-)	NCBI	ChiLan1.0	ChiLan1.0

CINP
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	15	103,501,026 - 103,517,333 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	14	102,711,402 - 102,733,827 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	14	82,969,659 - 82,984,299 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	14	102,786,775 - 102,801,135 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	14	102,786,775 - 102,801,135 (-)	Ensembl			panPan2	panpan1.1

CINP
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	8	70,307,464 - 70,332,838 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	8	70,307,586 - 70,332,845 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	8	69,820,916 - 69,846,278 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	8	70,584,457 - 70,609,937 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	8	70,584,027 - 70,609,944 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	8	70,249,161 - 70,274,841 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	8	70,314,086 - 70,339,458 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	8	70,714,952 - 70,740,490 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Cinp
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024408640	3,670,708 - 3,681,069 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936835	514,849 - 525,146 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936835	514,838 - 525,146 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CINP
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa10.2	7	129,378,184 - 129,389,349 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CINP
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	24	80,278,863 - 80,288,270 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	24	80,278,860 - 80,288,253 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666053	67,476,093 - 67,485,347 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Cinp
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624734	2,091,369 - 2,097,200 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624734	2,091,320 - 2,097,200 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Cinp
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	128,438,330 - 128,452,453 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Cinp
138 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	116
Count of miRNA genes:	95
Interacting mature miRNAs:	109
Transcripts:	ENSRNOT00000010598
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	112483610	147156653	Rat
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	114241077	147156653	Rat
1331799	Bp211	Blood pressure QTL 211	3.66407		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	88019181	136741135	Rat
10054138	Gmadr3	Adrenal mass QTL 3	3.68	0.00045	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	6	90871046	135871046	Rat
1581563	Uae33	Urinary albumin excretion QTL 33			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	93560258	136550638	Rat
1641917	Colcr5	Colorectal carcinoma resistance QTL 5	3.18	0.0009	intestine integrity trait (VT:0010554)	benign colorectal tumor number (CMO:0001795)	6	98944780	143944780	Rat
61414	Pia3	Pristane induced arthritis QTL 3	4.5		joint integrity trait (VT:0010548)	post-insult time to onset of experimental arthritis (CMO:0001450)	6	100704576	136029228	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	110921244	147156653	Rat
724524	Uae2	Urinary albumin excretion QTL 2	2.7	0.0005	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	6	79198463	144254945	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
2303624	Vencon5	Ventilatory control QTL 5	4.45		respiration trait (VT:0001943)	minute ventilation (CMO:0000132)	6	93778632	138778632	Rat
10054123	Srcrt6	Stress Responsive Cort QTL 6	2.5	0.0043	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	90871046	135871046	Rat
724536	Uae7	Urinary albumin excretion QTL 7	3.5		urine albumin amount (VT:0002871)	urine albumin level (CMO:0000130)	6	93560258	136550638	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	118366855	147156653	Rat
2312560	Pur20	Proteinuria QTL 20	2.1	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	131392689	143944780	Rat
2313399	Anxrr28	Anxiety related response QTL 28			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	6	101593607	138161926	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	122236101	147156653	Rat
1581550	Pur8	Proteinuria QTL 8			urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	6	93560258	136550638	Rat
12801471	Schws9	Schwannoma susceptibility QTL 9			nervous system integrity trait (VT:0010566)	percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)	6	101593607	146593607	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	121444670	147156653	Rat

Markers in Region

RH134370

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	129,885,626 - 129,885,806 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	135,290,587 - 135,290,766	NCBI	Rnor6.0
Rnor_5.0	6	145,123,391 - 145,123,570	UniSTS	Rnor5.0
RGSC_v3.4	6	135,595,647 - 135,595,826	UniSTS	RGSC3.4
Celera	6	127,453,506 - 127,453,685	UniSTS
RH 3.4 Map	6	785.19	UniSTS
Cytogenetic Map	6	q32	UniSTS

RH144050

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	129,891,763 - 129,891,975 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	135,296,722 - 135,296,933	NCBI	Rnor6.0
Rnor_5.0	6	145,117,223 - 145,117,434	UniSTS	Rnor5.0
RGSC_v3.4	6	135,601,783 - 135,601,994	UniSTS	RGSC3.4
Celera	6	127,459,666 - 127,459,877	UniSTS
RH 3.4 Map	6	785.8	UniSTS
Cytogenetic Map	6	q32	UniSTS

BG376521

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	129,887,099 - 129,887,208 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	135,292,060 - 135,292,168	NCBI	Rnor6.0
Rnor_5.0	6	145,121,989 - 145,122,097	UniSTS	Rnor5.0
RGSC_v3.4	6	135,597,120 - 135,597,228	UniSTS	RGSC3.4
Celera	6	127,454,979 - 127,455,087	UniSTS
RH 3.4 Map	6	784.79	UniSTS
Cytogenetic Map	6	q32	UniSTS

BI295617

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	129,889,563 - 129,889,723 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	135,294,522 - 135,294,681	NCBI	Rnor6.0
Rnor_5.0	6	145,119,475 - 145,119,634	UniSTS	Rnor5.0
RGSC_v3.4	6	135,599,583 - 135,599,742	UniSTS	RGSC3.4
Celera	6	127,457,466 - 127,457,625	UniSTS
RH 3.4 Map	6	785.19	UniSTS
Cytogenetic Map	6	q32	UniSTS

RH141781

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	129,885,412 - 129,885,722 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	135,290,373 - 135,290,682	NCBI	Rnor6.0
Rnor_5.0	6	145,123,475 - 145,123,784	UniSTS	Rnor5.0
RGSC_v3.4	6	135,595,433 - 135,595,742	UniSTS	RGSC3.4
Celera	6	127,453,292 - 127,453,601	UniSTS
RH 3.4 Map	6	785.8	UniSTS
Cytogenetic Map	6	q32	UniSTS

UniSTS:236949

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	6	129,885,673 - 129,885,941 (+)	MAPPER	mRatBN7.2
Rnor_6.0	6	135,290,634 - 135,290,901	NCBI	Rnor6.0
Rnor_5.0	6	145,123,255 - 145,123,523	NCBI	Rnor5.0
RGSC_v3.4	6	135,595,694 - 135,595,961	UniSTS	RGSC3.4
Celera	6	127,453,553 - 127,453,820	UniSTS
Cytogenetic Map	6	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039112100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC121220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC097975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC158883	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474034	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000010598 ⟹ ENSRNOP00000010598

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	135,706,793 - 135,720,689 (-)	Ensembl
mRatBN7.2 Ensembl	6	129,885,570 - 129,895,503 (-)	Ensembl
Rnor_6.0 Ensembl	6	135,290,530 - 135,304,422 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000099124 ⟹ ENSRNOP00000084104

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	135,708,851 - 135,720,689 (-)	Ensembl
mRatBN7.2 Ensembl	6	129,887,628 - 129,899,480 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000111103 ⟹ ENSRNOP00000096448

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	135,706,804 - 135,720,664 (-)	Ensembl
mRatBN7.2 Ensembl	6	129,885,579 - 129,895,446 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000135846 ⟹ ENSRNOP00000098651

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	135,706,793 - 135,720,648 (-)	Ensembl

RefSeq Acc Id:

NM_001106758 ⟹ NP_001100228

RefSeq Status:

PROVISIONAL

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	135,706,791 - 135,720,689 (-)	NCBI
mRatBN7.2	6	129,885,568 - 129,899,465 (-)	NCBI
Rnor_6.0	6	135,290,528 - 135,304,422 (-)	NCBI
Rnor_5.0	6	145,109,734 - 145,123,629 (+)	NCBI
RGSC_v3.4	6	135,595,588 - 135,609,484 (-)	RGD
Celera	6	127,453,447 - 127,467,366 (-)	RGD

Sequence:

show sequence

CTTCTGGTCATCTCGGTATCTACCTGTGGACCGCATGGAAGCAAAGACTCTTGGGATCACTACA
CCAAGAAAACCTGTCTTATCTGTCAGTGCAAGAAAACTCAAGGACAATGCAGCTGACTGGCATA
ACTTAATCCTGAAATGGGACAGCCTCAGCGACAAGGGCTTCACCACAGCGAGCAGTATTGCCAA
CCTGAAAGTCACCTTGTTGAGTAAAGAGAAGGTTGAATTAGAGAGCAGCAGTCCAACTTCCATC
GAAGAGGAAGAGAAGACAAACCTGGACTATGATAAAGGACTTGAAGCATTGTGTGAGGAGCTAC
AGGCCATCTTGGACGGCTTGACTAAAATACAAATGAAAATGGAAAAGCTGTCTTCAACCACCAA
GGGAATTTGTGAACTAGAAAATTACCACTACAGGGAAGAGAGCAGCCGGCCCCCTCTGTTTCAC
ACATGGCCCACGGCCTTCTTCTATGAGGTCTCCCACCAGCTCTCCGAAGCATACAGGAAGGAGC
TCCTTTTGAAGCACACCATTGGCGCAGAGCTGGCCCATACTGTAGACCGCAACCTCAGCCTGAC
CTACCTGTCCATGTGGCTGCACCAGCCCTACATAGAGAGCGACAGCAAGCTGCAGCTAGAGAGC
ATGCTGCTGGAAACAGGGCACCGGGCCCTTTGACTCCCTGGCCACCTTGCCTGTGACCACGGTC
TTGGAGCTCCAGACCACTGGCTGTTGTGCCTCAAGGGTCCTGGGGTCGCTCTCCCCACTGCTGC
AGCTGCCCCACTGCTCCGTCCCAGAGATCCTGAAGCTCCAGTGACATAAACAATGGCTGAGGGC
CGAGTTTTGTAAACCGGCGGACTTCACTGTTACATCCTGGAGACAGCCTGAGTTTCCTAGAAGC
TACTACTTTGTACCTGTCCTCCATTTGTCTGTTTTGTGGTCCTGGAAATCAAATCCAGACTTCA
TACAAACTGAATATTCAACTGCTGGTCCACACTCCCAACCCTGTGCTTAAAATCTGAAGAGAAT
GTTTTAGTTCTGAAACTATCCCAGAAATACCAGACGTGTAAAGTCTCCTAAGTGGGGACAGAGA
GATGGTTTAGCAGTTGAGAGCACTTGTGAACTTCTGGTTTCCCCTGGCAGCCACACATATTTGC
ATGTGCATGTGTGCAAATGCACATGCACCCACAGAGAAATAATCTTTTTAAATTTTAGTTTTAC
TTAGGTATTTGTGTATGGGCCACATATACAGATGACCATGGCAACCACAAATGGGGGTGGGGGT
GGGGTCCTTGGAGCTAGAGTTACAAGAGGTTGTCGGCCACCTGATTTGGGTGTCAGAAACCAAA
CTCCAGTCAGTCCTCTGGAAAAACAGTTCATGCTCTTAAGTGCTCAGTCATTTCTCCTATAGCT
GGAAATATATATATTTAATATATAAAATATATTAATAAAATATATTGAAATACACTGTTTTTAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

XM_039112095 ⟹ XP_038968023

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	135,708,750 - 135,720,796 (-)	NCBI
mRatBN7.2	6	129,887,529 - 129,899,574 (-)	NCBI

RefSeq Acc Id:

XM_039112096 ⟹ XP_038968024

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	135,708,750 - 135,720,796 (-)	NCBI
mRatBN7.2	6	129,887,529 - 129,899,574 (-)	NCBI

RefSeq Acc Id:

XM_039112097 ⟹ XP_038968025

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	135,703,875 - 135,720,796 (-)	NCBI
mRatBN7.2	6	129,882,649 - 129,899,574 (-)	NCBI

RefSeq Acc Id:

XM_039112098 ⟹ XP_038968026

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	135,703,875 - 135,720,796 (-)	NCBI
mRatBN7.2	6	129,882,649 - 129,899,574 (-)	NCBI

RefSeq Acc Id:

XM_039112099 ⟹ XP_038968027

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	135,698,477 - 135,720,798 (-)	NCBI
mRatBN7.2	6	129,878,618 - 129,899,575 (-)	NCBI

RefSeq Acc Id:

XM_039112100 ⟹ XP_038968028

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	135,706,801 - 135,720,795 (-)	NCBI
mRatBN7.2	6	129,885,578 - 129,899,573 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100228	(Get FASTA)	NCBI Sequence Viewer
	XP_038968023	(Get FASTA)	NCBI Sequence Viewer
	XP_038968024	(Get FASTA)	NCBI Sequence Viewer
	XP_038968025	(Get FASTA)	NCBI Sequence Viewer
	XP_038968026	(Get FASTA)	NCBI Sequence Viewer
	XP_038968027	(Get FASTA)	NCBI Sequence Viewer
	XP_038968028	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI58884	(Get FASTA)	NCBI Sequence Viewer
	EDL97491	(Get FASTA)	NCBI Sequence Viewer
	EDL97492	(Get FASTA)	NCBI Sequence Viewer
	EDL97493	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000010598
	ENSRNOP00000010598.6
	ENSRNOP00000084104
	ENSRNOP00000084104.1
	ENSRNOP00000096448
	ENSRNOP00000096448.2
	ENSRNOP00000098651.1

RefSeq Acc Id:

NP_001100228 ⟸ NM_001106758

- UniProtKB:

B0BNM8 (UniProtKB/TrEMBL), F7F444 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MEAKTLGITTPRKPVLSVSARKLKDNAADWHNLILKWDSLSDKGFTTASSIANLKVTLLSKEKV
ELESSSPTSIEEEEKTNLDYDKGLEALCEELQAILDGLTKIQMKMEKLSSTTKGICELENYHYR
EESSRPPLFHTWPTAFFYEVSHQLSEAYRKELLLKHTIGAELAHTVDRNLSLTYLSMWLHQPYI
ESDSKLQLESMLLETGHRAL

hide sequence

Ensembl Acc Id:

ENSRNOP00000010598 ⟸ ENSRNOT00000010598

RefSeq Acc Id:	XP_038968027 ⟸ XM_039112099
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6ALT9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968026 ⟸ XM_039112098
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZY53 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968025 ⟸ XM_039112097
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_038968028 ⟸ XM_039112100
- Peptide Label:	isoform X6
- UniProtKB:	A6KBP0 (UniProtKB/TrEMBL), A0A8I6ALT9 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038968024 ⟸ XM_039112096
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038968023 ⟸ XM_039112095
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000096448 ⟸ ENSRNOT00000111103

Ensembl Acc Id:

ENSRNOP00000084104 ⟸ ENSRNOT00000099124

Ensembl Acc Id:

ENSRNOP00000098651 ⟸ ENSRNOT00000135846

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-B0BNM8-F1-model_v2	AlphaFold	B0BNM8	1-212	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13694836

Promoter ID:

EPDNEW_R5358

Type:

initiation region

Name:

Cinp_1

Description:

cyclin-dependent kinase 2-interacting protein

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	6	135,304,448 - 135,304,508	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563395	AgrOrtholog
BioCyc Gene	G2FUF-35859	BioCyc
Ensembl Genes	ENSRNOG00000008035	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000010598	ENTREZGENE
	ENSRNOT00000010598.7	UniProtKB/TrEMBL
	ENSRNOT00000099124	ENTREZGENE
	ENSRNOT00000099124.2	UniProtKB/TrEMBL
	ENSRNOT00000111103	ENTREZGENE
	ENSRNOT00000111103.2	UniProtKB/TrEMBL
	ENSRNOT00000135846.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7937483	IMAGE-MGC_LOAD
InterPro	Cyclin-dep_Kinase_2_interact	UniProtKB/TrEMBL
KEGG Report	rno:299334	UniProtKB/TrEMBL
MGC_CLONE	MGC:188587	IMAGE-MGC_LOAD
NCBI Gene	299334	ENTREZGENE
PANTHER	CYCLIN-DEPENDENT KINASE 2-INTERACTING PROTEIN	UniProtKB/TrEMBL
	CYCLIN-DEPENDENT KINASE 2-INTERACTING PROTEIN	UniProtKB/TrEMBL
PhenoGen	Cinp	PhenoGen
PRINTS	CDK2IP	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000008035	RatGTEx
UniProt	A0A8I5ZY53	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ALT9	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LBJ6_RAT	UniProtKB/TrEMBL
	A6KBP0	ENTREZGENE, UniProtKB/TrEMBL
	B0BNM8	ENTREZGENE, UniProtKB/TrEMBL
	F7F444	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-07	Cinp	cyclin-dependent kinase 2-interacting protein	RGD1563395_predicted	similar to cyclin-dependent kinase 2-interacting protein (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1563395_predicted	similar to cyclin-dependent kinase 2-interacting protein (predicted)	LOC299334	similar to cyclin-dependent kinase 2-interacting protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC299334	similar to cyclin-dependent kinase 2-interacting protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar