Gtdc1 (glycosyltransferase-like domain containing 1)

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Gene: Gtdc1 (glycosyltransferase-like domain containing 1) Rattus norvegicus

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Symbol:

Gtdc1

Name:

glycosyltransferase-like domain containing 1

RGD ID:

1563393

Description:

Enables tRNA-queuosine(34) beta-mannosyltransferase activity. Involved in tRNA modification. Predicted to be located in nucleus. Predicted to be active in cytoplasm. Orthologous to human GTDC1 (glycosyltransferase like domain containing 1); INTERACTS WITH 6-propyl-2-thiouracil; amitrole; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

glycosyltransferase-like domain-containing protein 1; glycosyltransferase-like protein; LOC362129; QTMAN; tRNA-queuosine alpha-mannosyltransferase

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	49,176,110 - 49,571,594 (-)	NCBI		GRCr8
mRatBN7.2	3	28,766,640 - 29,161,668 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	28,766,645 - 29,162,271 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	32,164,654 - 32,554,967 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	40,749,692 - 41,139,997 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	38,568,394 - 38,958,706 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	29,410,426 - 29,705,981 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	29,410,426 - 29,705,985 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	34,615,976 - 34,911,407 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	25,042,343 - 25,345,382 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	27,077,114 - 27,374,815 (-)	NCBI		Celera
Cytogenetic Map	3	q12	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autosomal dominant intellectual developmental disorder 1 (ISO)

Mowat-Wilson syndrome (ISO)

myoepithelioma (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-alpha-phellandrene (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (ISO)

2,4-diaminotoluene (ISO)

6-propyl-2-thiouracil (EXP)

7,12-dimethyltetraphene (ISO)

aflatoxin B1 (ISO)

aflatoxin M1 (ISO)

alpha-phellandrene (ISO)

amitrole (EXP)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

arsenite(3-) (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

CGP 52608 (ISO)

chlordecone (ISO)

cisplatin (ISO)

copper(II) sulfate (ISO)

Dibutyl phosphate (ISO)

diethylstilbestrol (EXP)

dioxygen (ISO)

doxorubicin (ISO)

endosulfan (EXP)

ethanol (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

furan (EXP)

gentamycin (EXP)

indole-3-methanol (EXP)

methidathion (ISO)

methimazole (EXP)

methotrexate (ISO)

methyl methanesulfonate (ISO)

N,N-diethyl-m-toluamide (EXP)

N-nitrosodiethylamine (EXP)

O-methyleugenol (ISO)

oxaliplatin (EXP)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

permethrin (EXP)

sodium dichromate (EXP)

Soman (EXP)

sulfadimethoxine (EXP)

sunitinib (ISO)

thioacetamide (EXP)

topotecan (EXP)

trichloroethene (EXP)

trichostatin A (ISO)

triptonide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

regulation of translation (IEA,ISO)

tRNA modification (IDA,IEA,ISO)

Cellular Component

cytoplasm (IEA,ISO)

nucleus (IEA,ISO)

Molecular Function

glycosyltransferase activity (IEA)

tRNA-queuosine(34) beta-mannosyltransferase activity (IDA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Glycosylated queuosines in tRNAs optimize translational rate and post-embryonic growth.	Zhao X, etal., Cell. 2023 Dec 7;186(25):5517-5535.e24. doi: 10.1016/j.cell.2023.10.026. Epub 2023 Nov 21.

Genomics

Comparative Map Data

Gtdc1
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	3	49,176,110 - 49,571,594 (-)	NCBI		GRCr8
mRatBN7.2	3	28,766,640 - 29,161,668 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	3	28,766,645 - 29,162,271 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	3	32,164,654 - 32,554,967 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	3	40,749,692 - 41,139,997 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	3	38,568,394 - 38,958,706 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	3	29,410,426 - 29,705,981 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	3	29,410,426 - 29,705,985 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	3	34,615,976 - 34,911,407 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	3	25,042,343 - 25,345,382 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	3	27,077,114 - 27,374,815 (-)	NCBI		Celera
Cytogenetic Map	3	q12	NCBI

GTDC1
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	143,938,068 - 144,333,069 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	143,938,068 - 144,332,568 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	2	144,695,635 - 145,090,636 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	144,420,051 - 144,768,530 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Build 34	2	144,537,314 - 144,923,761	NCBI
Celera	2	138,416,309 - 138,773,953 (-)	NCBI		Celera
Cytogenetic Map	2	q22.3	NCBI
HuRef	2	136,694,427 - 137,081,275 (-)	NCBI		HuRef
CHM1_1	2	144,708,568 - 145,095,377 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	144,386,085 - 144,781,108 (-)	NCBI		T2T-CHM13v2.0

Gtdc1
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	2	44,454,420 - 44,817,761 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	2	44,454,424 - 44,817,669 (-)	Ensembl		GRCm39 Ensembl
GRCm38	2	44,564,412 - 44,927,717 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	2	44,564,412 - 44,927,657 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	2	44,419,942 - 44,717,142 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	2	44,386,431 - 44,683,631 (-)	NCBI		MGSCv36	mm8
Celera	2	46,279,991 - 46,577,581 (-)	NCBI		Celera
Cytogenetic Map	2	B	NCBI
cM Map	2	27.27	NCBI

Gtdc1
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955440	10,334,533 - 10,613,876 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955440	10,334,584 - 10,702,436 (-)	NCBI	ChiLan1.0	ChiLan1.0

GTDC1
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	13	30,580,758 - 30,966,173 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2B	30,595,689 - 30,981,144 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2B	15,512,420 - 15,899,477 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2B	148,024,000 - 148,370,779 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2B	148,026,117 - 148,312,426 (-)	Ensembl	panpan1.1		panPan2

GTDC1
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	19	45,971,203 - 46,273,888 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	19	45,973,109 - 46,365,143 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	19	46,225,123 - 46,618,749 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	19	47,431,445 - 47,824,801 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	19	47,431,457 - 47,824,757 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	19	46,089,792 - 46,482,874 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	19	46,221,623 - 46,614,340 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	19	47,616,846 - 48,009,770 (-)	NCBI		UU_Cfam_GSD_1.0

Gtdc1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405303	108,826,282 - 109,182,381 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936469	32,539,891 - 32,790,374 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936469	32,514,679 - 32,791,418 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

GTDC1
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	15	7,757,935 - 8,051,594 (+)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	15	7,685,969 - 8,162,784 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	15	8,377,968 - 8,636,346 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

GTDC1
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	10	29,275,462 - 29,674,966 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	10	29,293,207 - 29,548,585 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666040	169,883,093 - 170,289,268 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Gtdc1
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624732	43,646,458 - 43,909,842 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624732	43,629,144 - 44,044,616 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Gtdc1
1468 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	152
Count of miRNA genes:	115
Interacting mature miRNAs:	137
Transcripts:	ENSRNOT00000059679
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
6893355	Bw101	Body weight QTL 101	0.4	0.38	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
2302055	Pia30	Pristane induced arthritis QTL 30	3.5	0.001	blood autoantibody amount (VT:0003725)	serum immunoglobulin M-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002111)	3	27936919	72936919	Rat
1298073	Cm13	Cardiac mass QTL 13	2.5		heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	25013911	38192233	Rat
2303593	Gluco46	Glucose level QTL 46	3		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	3	28468571	73468571	Rat
1354590	Despr11	Despair related QTL 11		0.000031	locomotor behavior trait (VT:0001392)	amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)	3	28468571	73468571	Rat
634306	Bp140	Blood pressure QTL 140	3.3	0.0013	arterial blood pressure trait (VT:2000000)	body weight (CMO:0000012)	3	17374703	35528639	Rat
10401810	Kidm53	Kidney mass QTL 53			kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	8227194	47233430	Rat
1298526	Arunc3	Aerobic running capacity QTL 3	2.2		exercise endurance trait (VT:0002332)	maximum distance run on treadmill (CMO:0001406)	3	8227194	33703538	Rat
2298542	Neuinf11	Neuroinflammation QTL 11	3.9		nervous system integrity trait (VT:0010566)	spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)	3	15005422	76927699	Rat
631832	Sach1	Saccharin preference QTL 1	2.7	0.02	consumption behavior trait (VT:0002069)	calculated saccharin drink intake volume (CMO:0001600)	3	27494621	44188411	Rat
2313079	Bss73	Bone structure and strength QTL 73	1.5		tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	3	27494621	50302886	Rat
1558657	Cm43	Cardiac mass QTL 43	6.6	3e-08	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
2313076	Bss74	Bone structure and strength QTL 74	2	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	3	27494621	50302886	Rat
631568	Bp92	Blood pressure QTL 92	2.2	0.005	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	39874793	Rat
6893363	Bw105	Body weight QTL 105	2.6	0.0036	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
61468	Bp15	Blood pressure QTL 15	4.4		blood pressure trait (VT:0000183)	pulse pressure (CMO:0000292)	3	1	33278763	Rat
9590286	Uminl1	Urine mineral level QTL 1	3.5	0.001	urine mineral amount (VT:0015086)	urine electrolyte level (CMO:0000593)	3	28249687	73249687	Rat
631831	Alc8	Alcohol consumption QTL 8	2.7		consumption behavior trait (VT:0002069)	calculated ethanol drink intake rate (CMO:0001615)	3	1	33230976	Rat
1558647	Cm46	Cardiac mass QTL 46	5.4	0.0000055	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	3	10778823	30356773	Rat
4889966	Bss95	Bone structure and strength QTL 95	4.4		tibia area (VT:1000281)	tibia-fibula cross-sectional area (CMO:0001718)	3	1	36847613	Rat
2313093	Bmd77	Bone mineral density QTL 77	2.2	0.0001	tibia mineral mass (VT:1000283)	compact volumetric bone mineral density (CMO:0001730)	3	27494621	50302886	Rat
12879852	Cm93	Cardiac mass QTL 93		0.001	heart right ventricle mass (VT:0007033)	heart right ventricle weight to body weight ratio (CMO:0000914)	3	18311454	47233430	Rat
1558654	Bw56	Body weight QTL 56	4.5	0.0000171	body mass (VT:0001259)	body weight (CMO:0000012)	3	10778704	30357018	Rat
12879853	Am5	Aortic mass QTL 5		0.001	aorta mass (VT:0002845)	aorta weight to aorta length to body weight ratio (CMO:0002722)	3	18311454	47233430	Rat
12879854	Kidm63	Kidney mass QTL 63		0.001	kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	3	18311454	47233430	Rat
9590136	Scort3	Serum corticosterone level QTL 3	23.37	0.001	blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	3	28249687	73249687	Rat
10450804	Scl70	Serum cholesterol level QTL 70	4.7	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
1558650	Cm48	Cardiac mass QTL 48	4	0.0001	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	3	10778823	30356773	Rat
1358905	Hrtrt17	Heart rate QTL 17	5.9	0.000014	heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	3	10861912	89878372	Rat
12879849	Bw180	Body weight QTL 180		0.037	body mass (VT:0001259)	body weight (CMO:0000012)	3	18311454	47233430	Rat
70191	BpQTLcluster4	Blood pressure QTL cluster 4	3		arterial blood pressure trait (VT:2000000)	absolute change in systolic blood pressure (CMO:0000607)	3	10778704	50302886	Rat
12879850	Cm91	Cardiac mass QTL 91		0.001	heart mass (VT:0007028)	heart wet weight to body weight ratio (CMO:0002408)	3	18311454	47233430	Rat
2313101	Bmd76	Bone mineral density QTL 76	3.6	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	3	27494621	50302886	Rat
731172	Bp151	Blood pressure QTL 151		0.04	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	18311454	47233430	Rat
12879851	Cm92	Cardiac mass QTL 92		0.001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	18311454	47233430	Rat
631545	Bp85	Blood pressure QTL 85	3.1		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	3	1	33278763	Rat
8694196	Abfw2	Abdominal fat weight QTL 2	16.58	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	3	28249687	73249687	Rat
1358885	Bp251	Blood pressure QTL 251	3.8		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat
8552950	Pigfal12	Plasma insulin-like growth factor 1 level QTL 12	7.3		blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	3	28249687	73249687	Rat
631676	Cm8	Cardiac mass QTL 8	7.03	0.0001	aorta mass (VT:0002845)	aorta weight (CMO:0000076)	3	16954708	61954708	Rat
10450794	Scl69	Serum cholesterol level QTL 69	6.3	0.001	blood LDL cholesterol amount (VT:0000181)	blood low density lipoprotein cholesterol level (CMO:0000053)	3	20714090	65714090	Rat
631679	Cm10	Cardiac mass QTL 10	7.34	0.0001	heart left ventricle mass (VT:0007031)	heart left ventricle weight to body weight ratio (CMO:0000530)	3	1	31158234	Rat
2290452	Scl56	Serum cholesterol level QTL 56	2.26		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	3	1	91609953	Rat
8694386	Bw159	Body weight QTL 159	4.52	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	3	28249687	73249687	Rat
2313049	Bss72	Bone structure and strength QTL 72	2.6	0.0001	tibia area (VT:1000281)	tibia midshaft cross-sectional area (CMO:0001717)	3	27494621	50302886	Rat
2312664	Scl62	Serum cholesterol level QTL 62		0.05	blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	3	1	38710544	Rat
1358888	Bp264	Blood pressure QTL 264	4.43		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	3	14489145	121056321	Rat

Markers in Region

D3Rat117

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	29,017,490 - 29,017,683 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	29,660,928 - 29,661,120	NCBI	Rnor6.0
Rnor_5.0	3	34,866,354 - 34,866,546	UniSTS	Rnor5.0
RGSC_v3.4	3	25,296,991 - 25,297,184	RGD	RGSC3.4
RGSC_v3.4	3	25,296,992 - 25,297,184	UniSTS	RGSC3.4
RGSC_v3.1	3	25,193,364 - 25,193,556	RGD
Celera	3	27,328,330 - 27,328,522	UniSTS
RH 3.4 Map	3	630.51	RGD
RH 3.4 Map	3	630.51	UniSTS
SHRSP x BN Map	3	13.8798	UniSTS
SHRSP x BN Map	3	13.8798	RGD
Cytogenetic Map	3	q12	UniSTS

D3Got259

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	28,793,478 - 28,793,621 (+)	MAPPER	mRatBN7.2
Rnor_6.0	3	29,437,205 - 29,437,347	NCBI	Rnor6.0
Rnor_5.0	3	34,642,755 - 34,642,897	UniSTS	Rnor5.0
RGSC_v3.4	3	25,069,967 - 25,070,109	UniSTS	RGSC3.4
Celera	3	27,103,907 - 27,104,047	UniSTS
Cytogenetic Map	3	q12	UniSTS

RH131081

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	3	28,766,723 - 28,766,942 (+)	MAPPER	mRatBN7.2
mRatBN7.2	4	102,445,899 - 102,446,119 (-)	MAPPER	mRatBN7.2
Rnor_6.0	3	16,497,272 - 16,497,491	NCBI	Rnor6.0
Rnor_6.0	3	29,410,484 - 29,410,702	NCBI	Rnor6.0
Rnor_5.0	3	34,616,034 - 34,616,252	UniSTS	Rnor5.0
Rnor_5.0	3	21,794,076 - 21,794,295	UniSTS	Rnor5.0
RGSC_v3.4	3	25,042,401 - 25,042,619	UniSTS	RGSC3.4
RGSC_v3.4	4	103,644,306 - 103,644,525	UniSTS	RGSC3.4
Celera	3	27,077,172 - 27,077,390	UniSTS
Celera	3	15,850,282 - 15,850,501	UniSTS
RH 3.4 Map	3	324.81	UniSTS
Cytogenetic Map	3	q12	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system
9	11	49	113	91	90	59	25	59	6	218	97	93	45	60	31

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001024274	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001393689	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284080	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284081	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284082	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284083	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284084	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284085	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284086	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284087	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284088	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284089	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284090	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284091	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284092	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284093	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284094	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284095	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284096	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284097	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284098	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284099	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284100	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284101	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284102	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284103	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284104	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063284105	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064658	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XR_010064659	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AY281367	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473983	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000003	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000059679 ⟹ ENSRNOP00000056430

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	28,766,666 - 29,064,309 (-)	Ensembl
Rnor_6.0 Ensembl	3	29,410,426 - 29,705,985 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000093844 ⟹ ENSRNOP00000086826

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	28,766,645 - 29,162,271 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108792 ⟹ ENSRNOP00000079984

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	28,766,666 - 29,064,309 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000109271 ⟹ ENSRNOP00000082987

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	3	28,766,663 - 29,161,668 (-)	Ensembl

RefSeq Acc Id:

NM_001024274 ⟹ NP_001019445

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,110 - 49,571,115 (-)	NCBI
mRatBN7.2	3	28,766,640 - 29,161,668 (-)	NCBI
Rnor_6.0	3	29,410,426 - 29,705,981 (-)	NCBI
Rnor_5.0	3	34,615,976 - 34,911,407 (-)	NCBI
RGSC_v3.4	3	25,042,343 - 25,345,382 (-)	RGD
Celera	3	27,077,114 - 27,374,815 (-)	RGD

Sequence:

show sequence

GTATCGGCCATTACGGCGGGGGGAGGAGGAGGAGGAGGAGAAGGAGGAGGAGGTACCAGATCGG
ATATCAGTACATCCGGATCATAAGGTTTGATCAAGCCAATGAGTATTCTTATCATTGAGGCATT
TTATGGAGGCTCCCATCGACAGCTGGTAGAGCTGCTCCGAGAAGAAGTGGATGACTGTGTGCTG
TACACCCTTCCTGCAAAGAAATGGCATTGGCGAGCACGCACAGCAGCGCTGTACTTCTCACAGA
GTGTGCCCAGCAGTGAGCACTACAGTTTGGTGGCTGATGTTGTGGTATTCAATTCCAATTTTAA
TATGGAATCATTTCTTACTTCTATTGGAAAATTCCTGAAGCTGATTCCTGATCACAGGCCTAAG
GATCTGGAAAGCATTATCAGACCCAAGTGTCAAGTAATTTACTTTCCCATCAGATTTCCTGATG
TGAGCAGATTCATGCCCAAGCACAAAATAGCCCACTTAAGGAGGATGCTCAGCCTTATTGGAAA
TGATGCTGCAGCGCTGTCTGTGACGCTTCCTCCCCAACCAGAGCAGAGGCTTTCTAAGAAGTCA
CTGGAGAATTTTGAATCAAAGTCTGATGAACACCCTGGCCTTGATACTGAACAAGAAACCCTGG
ACACCCCAACAATCCTCAAATCAGTCTCCCTTCCTGTGAGCGAAGAAAACCCGGCTCTTGGTCA
CAGCACCTTTTTGTGTGGAGCTGAAGATCAGCAGAGACCGCTGCACATTACATGGCCGCACAGG
TGGGAGCATGACAAAGATCCAGAGACGTTTTTAAAGGTCTTAATGCATCTAAAAGAGTTAAGGC
TCAATTTCTACGTCTCTGTCCTTGGAGAGACTTTTACAGATGTACCAGATATATTTTCAGAAGC
CAAAAAGGCACTGGGCTCTTCAGTCTTGCACTGGGGCTACTTACCCAGTAAAGAAGACTATTTC
CGAGTACTGTGCACGGCTGATGTTGTCATCTCAACAGCCAAGCATGAATTCTTTGGAGTAGCAA
TGTTGGAAGCTGTGTACTGTGGCTGTTACCCACTCTGTCCCAAAGACTTGGTTTATCCTGAAAT
CTTTCCAGCTGAGTATCTGTATTCCACACCTGAACAGCTTTCAAAAAGGCTCAAGAGTTTCTGT
GAGAGACCAGACATTATAAGAAAACATCTTTATAAGGGTGAAGTGGCTCCATTTTCTTGGGCAG
CCCTACATGGTAAATTCAGGTCTCTGCTCACAACAGAACCCAGGGAAGATTTGTGACAGATGGG
GCTAAGTCGCAAACTTGCAGCCTAAGGCAGAATCTGAAGAACTTTCCAGAGTGTGCCCATATTT
ACCTGATCAGAGAGAAAAGAAAATCTGCAGAGGAAGCCGAGCCTGGCTGCTTGTCATAGCTGAC
ACAGAGCCATCTGCCACAAACCTGTGGCAGCTTCAGATCTCCAATCCCTGCCACCACCCCAACG
CAAATTAAATACAGATTCCTAGAGACGCTATGATGGTTACACATGTCCTCGGCATCACATGTAG
GAGACTGTTCAAAAAAAAATATGTGGCCTGTTGTATAACCGCACTCATGTATCCCATATGTGGT
GCCACATTGAATTTCCGGTTGAATCCGTTTTTATCCTTTGTACTGGATGACATGGTGCCTGAAT
TCTTTCTCTCTGCCGACACGATGGCAGCCAAACTGCAGCTTCAAACACTCACACTTGGCCGAGT
TTCTACCTGGGTTGCCAGGTTATCATCGGAGCCTTCTTGTGTCCTCAAAGGGCCACGGGGCCTA
GAAAGAGGATCAGAATGCTACCGAACTAATTGGGTAGCCATCTCAAAGCTGCTGTAGGCAAAGG
ACTGCTTTAGCACTTTTCTTTTAGCAAATTAATGACTCTCTGGCAAAGGAGGTTTAAGTGAAGG
TATTAATAAGGGGTCTGGCAGGTATTCCCATGATTCACAGGGTTTCATTTGCATTTAATTAATC
TTAAAGAAACTTGCAAGATAAACAGCTGTAATTCGGACAAACATGGCAGATTCAGTGAGTGAAG
TCCTCTCATCCATAAAATGAACACGAGATACTTGTTTTAAAATTTTTCCCTGTGGGTAAAAAGA
GAAAAATCAAAATGCTCATAACAAAACATAATTTGGTACAAAATTCCTCAAAAATACTTGCATC
CAACTATAAATATATTCCTTTTAAGATAAGTCACTTATGATTCTTGGAGTCAGGCTGCTCTGTT
TGTTGGTGTAAAGATGTTTTAAATGGCTGGATTGTAAAATAAATTTTTAATAGACA

hide sequence

RefSeq Acc Id:

NM_001393689 ⟹ NP_001380618

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,110 - 49,571,115 (-)	NCBI
mRatBN7.2	3	28,766,640 - 29,161,668 (-)	NCBI

RefSeq Acc Id:

XM_063284080 ⟹ XP_063140150

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,431,957 (-)	NCBI

RefSeq Acc Id:

XM_063284081 ⟹ XP_063140151

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,431,947 (-)	NCBI

RefSeq Acc Id:

XM_063284082 ⟹ XP_063140152

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,177,106 - 49,431,971 (-)	NCBI

RefSeq Acc Id:

XM_063284083 ⟹ XP_063140153

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,571,138 (-)	NCBI

RefSeq Acc Id:

XM_063284084 ⟹ XP_063140154

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,566,643 (-)	NCBI

RefSeq Acc Id:

XM_063284085 ⟹ XP_063140155

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,571,499 (-)	NCBI

RefSeq Acc Id:

XM_063284086 ⟹ XP_063140156

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,571,594 (-)	NCBI

RefSeq Acc Id:

XM_063284087 ⟹ XP_063140157

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,473,758 (-)	NCBI

RefSeq Acc Id:

XM_063284088 ⟹ XP_063140158

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,428,832 (-)	NCBI

RefSeq Acc Id:

XM_063284089 ⟹ XP_063140159

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,429,790 (-)	NCBI

RefSeq Acc Id:

XM_063284090 ⟹ XP_063140160

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,571,125 (-)	NCBI

RefSeq Acc Id:

XM_063284091 ⟹ XP_063140161

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,431,971 (-)	NCBI

RefSeq Acc Id:

XM_063284092 ⟹ XP_063140162

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,431,955 (-)	NCBI

RefSeq Acc Id:

XM_063284093 ⟹ XP_063140163

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,183,011 - 49,431,974 (-)	NCBI

RefSeq Acc Id:

XM_063284094 ⟹ XP_063140164

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,194,105 - 49,431,978 (-)	NCBI

RefSeq Acc Id:

XM_063284095 ⟹ XP_063140165

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,364,206 (-)	NCBI

RefSeq Acc Id:

XM_063284096 ⟹ XP_063140166

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,276,053 (-)	NCBI

RefSeq Acc Id:

XM_063284097 ⟹ XP_063140167

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,187,122 - 49,431,977 (-)	NCBI

RefSeq Acc Id:

XM_063284098 ⟹ XP_063140168

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,571,190 (-)	NCBI

RefSeq Acc Id:

XM_063284099 ⟹ XP_063140169

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,571,566 (-)	NCBI

RefSeq Acc Id:

XM_063284100 ⟹ XP_063140170

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,364,207 (-)	NCBI

RefSeq Acc Id:

XM_063284101 ⟹ XP_063140171

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,364,207 (-)	NCBI

RefSeq Acc Id:

XM_063284102 ⟹ XP_063140172

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,176,118 - 49,571,159 (-)	NCBI

RefSeq Acc Id:

XM_063284103 ⟹ XP_063140173

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,236,695 - 49,434,826 (-)	NCBI

RefSeq Acc Id:

XM_063284104 ⟹ XP_063140174

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,236,695 - 49,434,827 (-)	NCBI

RefSeq Acc Id:

XM_063284105 ⟹ XP_063140175

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,236,695 - 49,434,827 (-)	NCBI

RefSeq Acc Id:

XR_010064658

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,177,228 - 49,431,972 (-)	NCBI

RefSeq Acc Id:

XR_010064659

Type:

NON-CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	3	49,187,151 - 49,431,973 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001019445	(Get FASTA)	NCBI Sequence Viewer
	NP_001380618	(Get FASTA)	NCBI Sequence Viewer
	XP_063140150	(Get FASTA)	NCBI Sequence Viewer
	XP_063140151	(Get FASTA)	NCBI Sequence Viewer
	XP_063140152	(Get FASTA)	NCBI Sequence Viewer
	XP_063140153	(Get FASTA)	NCBI Sequence Viewer
	XP_063140154	(Get FASTA)	NCBI Sequence Viewer
	XP_063140155	(Get FASTA)	NCBI Sequence Viewer
	XP_063140156	(Get FASTA)	NCBI Sequence Viewer
	XP_063140157	(Get FASTA)	NCBI Sequence Viewer
	XP_063140158	(Get FASTA)	NCBI Sequence Viewer
	XP_063140159	(Get FASTA)	NCBI Sequence Viewer
	XP_063140160	(Get FASTA)	NCBI Sequence Viewer
	XP_063140161	(Get FASTA)	NCBI Sequence Viewer
	XP_063140162	(Get FASTA)	NCBI Sequence Viewer
	XP_063140163	(Get FASTA)	NCBI Sequence Viewer
	XP_063140164	(Get FASTA)	NCBI Sequence Viewer
	XP_063140165	(Get FASTA)	NCBI Sequence Viewer
	XP_063140166	(Get FASTA)	NCBI Sequence Viewer
	XP_063140167	(Get FASTA)	NCBI Sequence Viewer
	XP_063140168	(Get FASTA)	NCBI Sequence Viewer
	XP_063140169	(Get FASTA)	NCBI Sequence Viewer
	XP_063140170	(Get FASTA)	NCBI Sequence Viewer
	XP_063140171	(Get FASTA)	NCBI Sequence Viewer
	XP_063140172	(Get FASTA)	NCBI Sequence Viewer
	XP_063140173	(Get FASTA)	NCBI Sequence Viewer
	XP_063140174	(Get FASTA)	NCBI Sequence Viewer
	XP_063140175	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAQ16409	(Get FASTA)	NCBI Sequence Viewer
	EDM00482	(Get FASTA)	NCBI Sequence Viewer
	EDM00483	(Get FASTA)	NCBI Sequence Viewer
	EDM00484	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000056430.1
	ENSRNOP00000079984.1
	ENSRNOP00000082987.1
	ENSRNOP00000086826.1
	ENSRNOP00055011789
	ENSRNOP00060046022
	ENSRNOP00065036767
GenBank Protein	Q53E76	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001019445 ⟸ NM_001024274
- Peptide Label:	isoform 2
- UniProtKB:	Q53E76 (UniProtKB/Swiss-Prot), A0A8I5ZP27 (UniProtKB/TrEMBL)
- Sequence:	show sequence MSILIIEAFYGGSHRQLVELLREEVDDCVLYTLPAKKWHWRARTAALYFSQSVPSSEHYSLVAD VVVFNSNFNMESFLTSIGKFLKLIPDHRPKDLESIIRPKCQVIYFPIRFPDVSRFMPKHKIAHL RRMLSLIGNDAAALSVTLPPQPEQRLSKKSLENFESKSDEHPGLDTEQETLDTPTILKSVSLPV SEENPALGHSTFLCGAEDQQRPLHITWPHRWEHDKDPETFLKVLMHLKELRLNFYVSVLGETFT DVPDIFSEAKKALGSSVLHWGYLPSKEDYFRVLCTADVVISTAKHEFFGVAMLEAVYCGCYPLC PKDLVYPEIFPAEYLYSTPEQLSKRLKSFCERPDIIRKHLYKGEVAPFSWAALHGKFRSLLTTE PREDL hide sequence

Ensembl Acc Id:

ENSRNOP00000056430 ⟸ ENSRNOT00000059679

Ensembl Acc Id:

ENSRNOP00000082987 ⟸ ENSRNOT00000109271

Ensembl Acc Id:

ENSRNOP00000086826 ⟸ ENSRNOT00000093844

Ensembl Acc Id:

ENSRNOP00000079984 ⟸ ENSRNOT00000108792

RefSeq Acc Id:	NP_001380618 ⟸ NM_001393689
- Peptide Label:	isoform 1
- UniProtKB:	A0A8I6GA65 (UniProtKB/TrEMBL), A6JEX6 (UniProtKB/TrEMBL), A0A8I5ZP27 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140156 ⟸ XM_063284086
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A338 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140169 ⟸ XM_063284099
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063140155 ⟸ XM_063284085
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A338 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140168 ⟸ XM_063284098
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063140172 ⟸ XM_063284102
- Peptide Label:	isoform X13

RefSeq Acc Id:	XP_063140153 ⟸ XM_063284083
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A338 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140160 ⟸ XM_063284090
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I6GA65 (UniProtKB/TrEMBL), A6JEX6 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140154 ⟸ XM_063284084
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A338 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140157 ⟸ XM_063284087
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A338 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140161 ⟸ XM_063284091
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_063140150 ⟸ XM_063284080
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063140162 ⟸ XM_063284092
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_063140151 ⟸ XM_063284081
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063140159 ⟸ XM_063284089
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A338 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140158 ⟸ XM_063284088
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I6A338 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063140171 ⟸ XM_063284101
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063140170 ⟸ XM_063284100
- Peptide Label:	isoform X14

RefSeq Acc Id:	XP_063140165 ⟸ XM_063284095
- Peptide Label:	isoform X10

RefSeq Acc Id:	XP_063140166 ⟸ XM_063284096
- Peptide Label:	isoform X11

RefSeq Acc Id:	XP_063140152 ⟸ XM_063284082
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063140163 ⟸ XM_063284093
- Peptide Label:	isoform X8

RefSeq Acc Id:	XP_063140167 ⟸ XM_063284097
- Peptide Label:	isoform X12

RefSeq Acc Id:	XP_063140164 ⟸ XM_063284094
- Peptide Label:	isoform X9

RefSeq Acc Id:	XP_063140174 ⟸ XM_063284104
- Peptide Label:	isoform X16

RefSeq Acc Id:	XP_063140175 ⟸ XM_063284105
- Peptide Label:	isoform X17

RefSeq Acc Id:	XP_063140173 ⟸ XM_063284103
- Peptide Label:	isoform X15

Protein Domains

Glycosyl transferase family tRNA-queuosine alpha-mannosyltransferase N-terminal

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q53E76-F1-model_v2	AlphaFold	Q53E76	1-389	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563393	AgrOrtholog
BioCyc Gene	G2FUF-49844	BioCyc
Ensembl Genes	ENSRNOG00000031038	Ensembl, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	ENSRNOG00055008708	UniProtKB/Swiss-Prot
	ENSRNOG00060032094	UniProtKB/Swiss-Prot
	ENSRNOG00065026018	UniProtKB/Swiss-Prot
Ensembl Transcript	ENSRNOT00000059679.2	UniProtKB/Swiss-Prot
	ENSRNOT00000093844.1	UniProtKB/TrEMBL
	ENSRNOT00000108792.1	UniProtKB/TrEMBL
	ENSRNOT00000109271.1	UniProtKB/TrEMBL
	ENSRNOT00055014749	UniProtKB/Swiss-Prot
	ENSRNOT00060055652	UniProtKB/Swiss-Prot
	ENSRNOT00065044876	UniProtKB/Swiss-Prot
Gene3D-CATH	Glycogen Phosphorylase B	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
InterPro	Glyco_trans_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GlycosylTrfase_1_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GT-like_domain_containing_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:362129	UniProtKB/Swiss-Prot
NCBI Gene	362129	ENTREZGENE
PANTHER	GLYCOSYLTRANSFERASE-LIKE 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GLYCOSYLTRANSFERASE-LIKE DOMAIN-CONTAINING PROTEIN 1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	DUF3524	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	Glycos_transf_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Gtdc1	PhenoGen
RatGTEx	ENSRNOG00000031038	RatGTEx
	ENSRNOG00055008708	RatGTEx
	ENSRNOG00060032094	RatGTEx
	ENSRNOG00065026018	RatGTEx
Superfamily-SCOP	UDP-Glycosyltransferase/glycogen phosphorylase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZP27	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6A338	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6GA65	ENTREZGENE, UniProtKB/TrEMBL
	A6JEX6	ENTREZGENE, UniProtKB/TrEMBL
	GTDC1_RAT	UniProtKB/Swiss-Prot, ENTREZGENE

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Gtdc1	glycosyltransferase-like domain containing 1	LOC362129	glycosyltransferase-like protein	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC362129	glycosyltransferase-like protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar