Ctps2 (CTP synthase 2) - Rat Genome Database

Name: Ctps2
Creator: Rat Genome Database
License: Creative Commons CC BY 4.0
Keywords: Rat Gene RGD Genome

Gene: Ctps2 (CTP synthase 2) Rattus norvegicus

Analyze

Symbol:

Ctps2

Name:

CTP synthase 2

RGD ID:

1563369

Description:

Predicted to enable CTP synthase activity and identical protein binding activity. Predicted to be involved in CTP biosynthetic process and pyrimidine nucleobase biosynthetic process. Predicted to be active in cytoophidium and cytoplasm. Orthologous to human CTPS2 (CTP synthase 2); PARTICIPATES IN de novo pyrimidine biosynthetic pathway; pyrimidine metabolic pathway; INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 3,3',5,5'-tetrabromobisphenol A; acrylamide.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

CTP synthase II; CTP synthetase 2; cytidine 5'-triphosphate synthase 2; cytidine triphosphate synthase II; UTP--ammonia ligase 2

RGD Orthologs

Alliance Genes

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	CTPS2 (CTP synthase 2)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Ctps2 (cytidine 5'-triphosphate synthase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ctps2 (CTP synthase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	CTPS2 (CTP synthase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	CTPS2 (CTP synthase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ctps2 (CTP synthase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	CTPS2 (CTP synthase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	CTPS2 (CTP synthase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ctps2 (CTP synthase 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	CTPS1 (CTP synthase 1)	HGNC	OrthoDB
Homo sapiens (human):	LAMA4 (laminin subunit alpha 4)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	CTPS2 (CTP synthase 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ctps2 (cytidine 5'-triphosphate synthase 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CTPsyn	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	URA7	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Saccharomyces cerevisiae (baker's yeast):	URA8	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	ctps-1	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	ctps2	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	35,277,658 - 35,418,505 (-)	NCBI		GRCr8
mRatBN7.2	X	31,645,873 - 31,786,733 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	31,645,873 - 31,786,733 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	32,680,414 - 32,821,042 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	36,115,648 - 36,256,507 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	32,304,820 - 32,445,434 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	33,383,087 - 33,522,852 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	33,383,087 - 33,522,836 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	33,730,550 - 33,870,224 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	52,387,522 - 52,541,409 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	31,959,615 - 32,091,064 (-)	NCBI		Celera
Cytogenetic Map	X	q14	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

autistic disorder (ISO)

colorectal cancer (ISO)

genetic disease (ISO)

Neurodevelopmental Disorders (ISO)

syndromic X-linked intellectual disability Lubs type (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

(1->4)-beta-D-glucan (ISO)

1,2-dichloroethane (ISO)

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-methylcholine (ISO)

3,3',5,5'-tetrabromobisphenol A (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

antirheumatic drug (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsenous acid (ISO)

atrazine (ISO)

benzo[a]pyrene (ISO)

benzo[b]fluoranthene (ISO)

benzo[e]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bucladesine (ISO)

cadmium dichloride (ISO)

caffeine (ISO)

carbamazepine (ISO)

carbon nanotube (ISO)

choline (ISO)

ciguatoxin CTX1B (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

coumarin (ISO)

cyclosporin A (ISO)

diarsenic trioxide (ISO)

dibutyl phthalate (ISO)

diclofenac (ISO)

diuron (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

finasteride (EXP)

folic acid (ISO)

FR900359 (ISO)

fulvestrant (ISO)

furan (EXP)

indometacin (EXP)

isoprenaline (ISO)

ivermectin (ISO)

L-ascorbic acid (ISO)

L-methionine (ISO)

lipopolysaccharide (ISO)

medroxyprogesterone acetate (ISO)

methapyrilene (ISO)

methylmercury chloride (ISO)

N(4)-hydroxycytidine (ISO)

N-nitrosodiethylamine (ISO)

nickel atom (ISO)

oxaliplatin (EXP)

p-toluidine (EXP)

paracetamol (EXP,ISO)

pentachlorophenol (ISO)

perfluorohexanesulfonic acid (ISO)

perfluorononanoic acid (ISO)

perfluorooctane-1-sulfonic acid (ISO)

perfluorooctanoic acid (ISO)

phenobarbital (ISO)

pirinixic acid (EXP,ISO)

potassium chromate (ISO)

resveratrol (ISO)

rotenone (EXP)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

Soman (EXP)

thapsigargin (EXP)

topotecan (EXP)

trichostatin A (ISO)

triptonide (ISO)

urethane (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

'de novo' CTP biosynthetic process (IEA)

biological_process (ND)

CTP biosynthetic process (IBA)

glutamine metabolic process (IEA)

pyrimidine nucleobase biosynthetic process (IBA,IEA)

Cellular Component

cytoophidium (IBA,IEA)

cytoplasm (IBA,IEA)

Molecular Function

ATP binding (IEA)

CTP synthase activity (IBA,IEA)

identical protein binding (IBA,IEA,ISO)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

de novo pyrimidine biosynthetic pathway (ISO)

pyrimidine metabolic pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Regulation of human cytidine triphosphate synthetase 2 by phosphorylation.	Kassel KM, etal., J Biol Chem. 2010 Oct 29;285(44):33727-36. Epub 2010 Aug 25.
3.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
4.	GOA pipeline	RGD automated data pipeline
5.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
6.	Comprehensive gene review and curation	RGD comprehensive gene curation
7.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
8.	Low cytosine triphosphate synthase 2 expression renders resistance to 5-fluorouracil in colorectal cancer.	Tan WL, etal., Cancer Biol Ther. 2011 Mar 15;11(6):599-608. Epub 2011 Mar 15.

Additional References at PubMed

PMID:10899599	PMID:15489334	PMID:16189514	PMID:18614015	PMID:25416956	PMID:31515488	PMID:31873303

Genomics

Comparative Map Data

Ctps2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	35,277,658 - 35,418,505 (-)	NCBI		GRCr8
mRatBN7.2	X	31,645,873 - 31,786,733 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	31,645,873 - 31,786,733 (-)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	X	32,680,414 - 32,821,042 (-)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	36,115,648 - 36,256,507 (-)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	32,304,820 - 32,445,434 (-)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	33,383,087 - 33,522,852 (-)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	33,383,087 - 33,522,836 (-)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	X	33,730,550 - 33,870,224 (-)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	X	52,387,522 - 52,541,409 (-)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	X	31,959,615 - 32,091,064 (-)	NCBI		Celera
Cytogenetic Map	X	q14	NCBI

CTPS2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	16,587,999 - 16,712,910 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	16,587,999 - 16,712,936 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	X	16,606,122 - 16,731,033 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	16,516,043 - 16,640,980 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	X	20,724,510 - 20,849,457 (-)	NCBI		Celera
Cytogenetic Map	X	p22.2	NCBI
HuRef	X	14,360,950 - 14,485,310 (-)	NCBI		HuRef
CHM1_1	X	16,636,520 - 16,761,487 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	X	16,170,460 - 16,295,388 (-)	NCBI		T2T-CHM13v2.0

Ctps2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	161,684,264 - 161,817,537 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	161,684,234 - 161,815,504 (+)	Ensembl		GRCm39 Ensembl
GRCm38	X	162,901,268 - 163,034,541 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	162,901,238 - 163,032,508 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	X	159,339,492 - 159,472,473 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	X	158,245,710 - 158,376,424 (+)	NCBI		MGSCv36	mm8
MGSCv36	X	140,027,769 - 140,160,968 (+)	NCBI		MGSCv36	mm8
Celera	X	146,125,743 - 146,259,238 (+)	NCBI		Celera
Cytogenetic Map	X	F4	NCBI
cM Map	X	75.09	NCBI

Ctps2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955519	1,588,182 - 1,647,958 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955519	1,587,998 - 1,647,810 (+)	NCBI	ChiLan1.0	ChiLan1.0

CTPS2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	18,384,654 - 18,507,667 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	18,389,580 - 18,511,051 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	9,209,727 - 9,332,641 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	16,579,409 - 16,699,793 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	16,579,409 - 16,693,184 (-)	Ensembl	panpan1.1		panPan2

CTPS2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	12,759,998 - 12,867,707 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	12,760,015 - 12,865,111 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	12,611,446 - 12,718,873 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	12,720,317 - 12,828,614 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	12,720,323 - 12,828,485 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	12,791,408 - 12,898,767 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	12,777,542 - 12,885,193 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	12,909,665 - 12,951,143 (-)	NCBI		UU_Cfam_GSD_1.0

Ctps2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	5,888,662 - 5,988,561 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936470	5,888,469 - 5,988,525 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936470	5,889,393 - 5,988,558 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

CTPS2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	13,049,941 - 13,174,568 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	X	13,050,740 - 13,181,131 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	13,996,225 - 14,092,759 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

CTPS2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	15,027,539 - 15,143,812 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	15,025,876 - 15,143,615 (-)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666056	16,872,972 - 16,995,868 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ctps2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624829	1,386,544 - 1,438,052 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624829	1,373,568 - 1,438,052 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Ctps2
758 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	31
Count of miRNA genes:	28
Interacting mature miRNAs:	29
Transcripts:	ENSRNOT00000059031
Prediction methods:	Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1	43491017	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	1448129	31706553	Rat
1298071	Edpm12	Estrogen-dependent pituitary mass QTL 12	3.2		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	X	2927898	47927898	Rat
10755455	Coatc13	Coat color QTL 13		0	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	7	4406000	49406000	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	4494549	49494549	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	14843113	120568734	Rat
71116	Niddm16	Non-insulin dependent diabetes mellitus QTL 16	7.81		blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	15297802	60297802	Rat
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	20990947	41052531	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	20990947	41203591	Rat

Markers in Region

DXWox7

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	31,706,555 - 31,706,768 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	33,443,850 - 33,444,060	NCBI	Rnor6.0
Rnor_5.0	X	33,791,313 - 33,791,523	UniSTS	Rnor5.0
RGSC_v3.4	X	52,447,480 - 52,447,693	RGD	RGSC3.4
RGSC_v3.4	X	52,447,481 - 52,447,693	UniSTS	RGSC3.4
RGSC_v3.1	X	52,500,949 - 52,501,162	RGD
Celera	X	32,020,450 - 32,020,652	UniSTS
RH 3.4 Map	X	451.3	UniSTS
RH 3.4 Map	X	451.3	RGD
RH 2.0 Map	21	345.6	RGD
Cytogenetic Map	X	q21	UniSTS

DXMgh12

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	31,706,553 - 31,706,766 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	33,443,848 - 33,444,058	NCBI	Rnor6.0
Rnor_5.0	X	33,791,311 - 33,791,521	UniSTS	Rnor5.0
RGSC_v3.4	X	52,447,478 - 52,447,691	RGD	RGSC3.4
RGSC_v3.4	X	52,447,479 - 52,447,691	UniSTS	RGSC3.4
RGSC_v3.1	X	52,500,947 - 52,501,160	RGD
Celera	X	32,020,448 - 32,020,650	UniSTS
RH 3.4 Map	X	443.0	UniSTS
RH 3.4 Map	X	443.0	RGD
RH 2.0 Map	21	334.2	RGD
Cytogenetic Map	X	q21	UniSTS

DXWox15

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	31,706,553 - 31,706,766 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	33,443,848 - 33,444,058	NCBI	Rnor6.0
Rnor_5.0	X	33,791,311 - 33,791,521	UniSTS	Rnor5.0
RGSC_v3.4	X	52,447,478 - 52,447,691	RGD	RGSC3.4
RGSC_v3.4	X	52,447,479 - 52,447,691	UniSTS	RGSC3.4
RGSC_v3.1	X	52,500,947 - 52,501,160	RGD
Celera	X	32,020,448 - 32,020,650	UniSTS
RH 3.4 Map	X	451.3	UniSTS
RH 3.4 Map	X	451.3	RGD
RH 2.0 Map	21	340.6	RGD
Cytogenetic Map	X	q21	UniSTS

DXWox38

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	31,706,561 - 31,706,780 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	33,443,856 - 33,444,072	NCBI	Rnor6.0
Rnor_5.0	X	33,791,319 - 33,791,535	UniSTS	Rnor5.0
RGSC_v3.4	X	52,447,487 - 52,447,705	UniSTS	RGSC3.4
Celera	X	32,020,456 - 32,020,664	UniSTS
Cytogenetic Map	X	q21	UniSTS

RH131066

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	31,647,173 - 31,648,585 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	33,384,388 - 33,385,799	NCBI	Rnor6.0
Rnor_5.0	X	33,731,851 - 33,733,262	UniSTS	Rnor5.0
RGSC_v3.4	X	52,387,650 - 52,389,061	UniSTS	RGSC3.4
Celera	X	31,960,916 - 31,962,327	UniSTS
RH 3.4 Map	X	456.6	UniSTS
Cytogenetic Map	X	q21	UniSTS

RH128976

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	31,645,929 - 31,646,139 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	33,383,144 - 33,383,353	NCBI	Rnor6.0
Rnor_5.0	X	33,730,607 - 33,730,816	UniSTS	Rnor5.0
RGSC_v3.4	X	52,386,406 - 52,386,615	UniSTS	RGSC3.4
Celera	X	31,959,672 - 31,959,881	UniSTS
RH 3.4 Map	X	456.1	UniSTS
Cytogenetic Map	X	q21	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	3	22	53	37	19	37	1	1	74	35	41	11	1
Low		21	4	4		4	7	10					7
Below cutoff

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001034998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256896	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256897	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256898	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256899	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006256900	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602145	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC085358	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC085949	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	DV724473	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000059031 ⟹ ENSRNOP00000055810

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	31,645,873 - 31,786,733 (-)	Ensembl
Rnor_6.0 Ensembl	X	33,383,087 - 33,522,836 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000101251 ⟹ ENSRNOP00000083758

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	31,645,873 - 31,786,733 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000102947 ⟹ ENSRNOP00000097478

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	31,647,046 - 31,780,262 (-)	Ensembl

RefSeq Acc Id:

ENSRNOT00000106996 ⟹ ENSRNOP00000084727

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	X	31,664,598 - 31,780,120 (-)	Ensembl

RefSeq Acc Id:

NM_001034998 ⟹ NP_001030170

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	35,277,658 - 35,418,505 (-)	NCBI
mRatBN7.2	X	31,645,873 - 31,786,733 (-)	NCBI
Rnor_6.0	X	33,383,087 - 33,522,836 (-)	NCBI
Rnor_5.0	X	33,730,550 - 33,870,224 (-)	NCBI
RGSC_v3.4	X	52,387,522 - 52,541,409 (-)	RGD
Celera	X	31,959,615 - 32,091,064 (-)	NCBI

Sequence:

show sequence

GCTGTATCTCCCTCTCTTCCGCAGATGGCCCAGAAGGGAAAAAAGACAATAATTGCATCTGGGT
ATTGGGAGTCACCCATTTGCCCGCCAATGAAGTATATCCTGGTTACTGGTGGGGTCATCTCAGG
CATTGGTAAAGGGATCATCGCCAGCAGCATTGGGACCATTCTCAAGTCATGTGGACTCCGAGTA
ACCGCCATCAAGATCGACCCCTACATTAACATTGATGCTGGCACTTTCTCACCTTACGAACATG
GTGAAGTATTTGTTTTAAATGATGGTGGAGAAGTTGATTTGGACCTTGGAAATTATGAAAGATT
CTTGGACATTAATCTTTATAAAGACAACAACATCACCACTGGGAAGATATATCAGCATGTGATC
AACAAAGAGAGGCGCGGTGATTATCTGGGGAAAACTGTCCAAGTGGTCCCCCACATTACTGATG
CTATCCAAGACTGGGTTATGAATCAAGCCAAGGTGTCTGTGGATGGCAATAAGGAAGATCCCCA
GATATGTGTTATCGAGCTGGGAGGCACCATTGGAGACATCGAAGGGATGGCATTTGTGGAAGCA
TTCCGACAATTCCAGTTTAAAGCAAAGAGAGAGAATTTCTATAATATTCATGTCAGCCTTGTGC
CACAGCCCAGTGCTACTGGAGAACAAAAAACCAAGCCTACACAAAACAGTGTCCGTGCGCTGAG
AGGGCTGGGCTTGTCTCCGGATCTGATTGTCTGCCGAAGTTCAACACCCATTGAGATGGCTGTG
AAGGAGAAGATTTCTATGTTTTGTCACGTGAACCCTGAACAGGTCATCTGTATCCATGATGTTT
CTTCCATCTACCGAGTCCCTCTTCTTTTGGAGGAGCAAGGTGTGGTTAAATATTTTCAAGAGAG
ATTGGACCTGCCCATCAATGATTGCTCAAATAATTTGCTTTTCAAGTGGAAAACCATGGCTGAC
AGGTATGAAAGATTGCAGAAAATATGTTCCATAGCCCTGGTTGGTAAATACACCAAACTCAGGG
ACTGCTACGCCTCTGTGTTCAAAGCCCTGGAACACTCAGCCTTGGCCATCAACCACAAGTTGAA
TCTGATGTACATAGACTCCATTGATCTGGAGCCAGTCACCAAAGCTGAGGATCCTGTGAAATTC
CATGAAGCTTGGCAGAAGCTGTGCTTAGCTGATGGTATTCTCGTGCCTGGAGGCTTTGGAATCC
GAGGAACATTGGGAAAACTCCAGGCAATTTCTTGGGCAAGGACAAAGAAGATTCCATTTCTGGG
AATTTGCCTTGGGATGCAACTGGCAGTGATTGAGTTTGCAAGAAACTGCCTGAACTTGAAAGAT
GCTAATTCTACAGAATTTGATCCAAACACTCCAGTCCCATTGGTAATTGACATGCCTGAACACA
ACCCTGGCGATTTGGGAGGAACAATGAGACTGGGATTAAGACGAACTGTTTTCACAACTGAAAA
TTCCATACTGAAGAAGCTTTACGGTGATGTTCCTTACATAGAAGAAAGACACCGACATCGGTAT
GAGGTGAACCCTAACCTGATCAACCAATTTGAGAATAAAGACCTTTGCTTTGTCGGTGAGGATG
TGGATGGGAAGAGGATGGAGATTATTGAATTGACAGGTCATCCATATTTCATCGGCGTCCAATT
CCATCCTGAGTTTTCCTCTAGGCCAATGAAGCCTTCCCCTCCGTACCTGGGACTCTTACTTGCA
GCAACCGGAACTCTGAATACCCATCTGCAACAGATGAGCAAACTATCGTACAGTGACATATACA
GTGATGCCAGTGATGATAGCTTTTCAGAGGCGAAGTTTGCTGAGCTGGATATCAACTGAAGCTC
TTTCTTGCCTCAGGAATGGCAGAAGCCACCTAAGAGGCCTCTGAAGTAATTATACTTAAGATGA
AAGAATTATCTGAAGAAACCACCACTCTGTTCCCTAGACATGGGCTGTGAAGATTCAAAGGGAA
TCTGCAAATGTTTACTTCATGAAACAGAACCAAAGGGATTCTTTTCTTTTCCCTCCAGAGGCAG
CCTGTAGTATTCACACATTTCTGTACTTAATTAAATGTAATTCAACAGCAATCCCGGGGTAGAA
AGTGTTTTTGTTTTGTCCAGAACATGGTGAGTTCAAGGTGGTAAGCAGGAATTGGGGGAACTTT
GTCTTCACAGTATTGCATGGGTAAGGTGGTGGGCATATGCTATAACCAATTTTGGGTTTAAAAA
TGAGTTGTTCTCTTACCTGGACATGAACTACAGGTTAGTATGGGAGTTAAGATTATTTTACGTT
CTCATTCTGTTTATTTCCAGTAAGTCTATTTTCTCAAATATAAAATGTAAAAGGGAATCTGAAA
ACTTAGGAATCGGGGTAAGTAGGGCTGAGTTCCATCTCTTCAACCCACACAGAGCAGCAAACCA
GTACCCACAGGTCTTCTGACCCCAGCATGTGCACACACAGACACACCCACTAAAAATCATTAAA
AACAAAACAATAATCACTTTGTTTTTTTAAATTCAAATTACTTTTTATTATTCTTTTGACAACT
TCGTACATACATAGAATTATTTTGGTCATTTAAAAACTTTTTTCAGAGTGATTTATTTATTTAT
TATTTTTCATATCCCAGTTGTTGCCCCCTCTTTTTATTACACTCTCACTCCATTCTCACTGAAA
CCCTTCTTCTCAAATAAGTCCCTCTTTTATTTTCATGTCTTTTCTGTTGCTTTGTCTTTTTCTT
ATTGAGATAGCATCTCACTCCGTAGTGCAAGCTAACATGGGACTTACTGTGTAGTCGGCTATAG
TCTTGGCTCACTGTGATCCTCTGGCCTCAGCCTCTCATGAGTTAGGATTATAGGTGTGAGCTGT
TCTTCTGTGCTCAAGATCAGCATTTTTGTTTGGTTTTTGAGACAAGTTTTTGCTACGTAGCCCT
GGTTGTACTGGAACTCACTGTGGCTGGCCTTAAAGTCACAAAGATATGCCATTCTCTGCCTCTC
GAGTGCTGGAGTTAAAGGCATATACAAACACACTTGGCTAACTTTTTTTTCAGTTGGAAAAATA
ACAATTGTAAAGTGAATTATGCATTGGCATTTACTGATACTTCACAGCTCTCAGTTTTATGAAA
TTACTCCAGAATTAACCTCTGTTCCCATGGGCAGTCACTCCAGAGGTATTTCTTTCTGTCCTCA
TCCTCTGGCAACTCTTGTAACTACATTGATCAAGGCAACTTGGAAATAAAAGAAAGCACTGATC
AACCTCTA

hide sequence

RefSeq Acc Id:

XM_006256896 ⟹ XP_006256958

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	35,277,658 - 35,412,033 (-)	NCBI
mRatBN7.2	X	31,645,873 - 31,780,262 (-)	NCBI
Rnor_6.0	X	33,383,087 - 33,516,372 (-)	NCBI
Rnor_5.0	X	33,730,550 - 33,870,224 (-)	NCBI

Sequence:

show sequence

GTGTGGACTAGGGCCAAGGGCGTCTAGAGCGGAGGGTGATGGGAGCTGCCTGTGCCGTAGGGAA
CACTTTTTAGGCGCTTGTTTTGTACCACCGCTGGAACTCAACGCTGCAGCACTCCTAATTTCAC
AACCAGCGTGAGTCAGCTGGGCGGGCTGCAGGACCGCGAGGGGAAGGTGGGTGAGGAGGGCTCC
TCAGTCCCTGGGGGCAGGCCGGATCTAGTGGTGACGAGAGAGCCCTAGATGTGGTCCCTGCGCC
CATAGGACAGGTGAGCGCCAGCCCAGACTGGCCGCTGGGTGGAGCTGCGTGAGCTATCGTCCAC
GGCGCCCTCGCCACTGCACAGATTGCATCTGGGTATTGGGAGTCACCCATTTGCCCGCCAATGA
AGTATATCCTGGTTACTGGTGGGGTCATCTCAGGCATTGGTAAAGGGATCATCGCCAGCAGCAT
TGGGACCATTCTCAAGTCATGTGGACTCCGAGTAACCGCCATCAAGATCGACCCCTACATTAAC
ATTGATGCTGGCACTTTCTCACCTTACGAACATGGTGAAGTATTTGTTTTAAATGATGGTGGAG
AAGTTGATTTGGACCTTGGAAATTATGAAAGATTCTTGGACATTAATCTTTATAAAGACAACAA
CATCACCACTGGGAAGATATATCAGCATGTGATCAACAAAGAGAGGCGCGGTGATTATCTGGGG
AAAACTGTCCAAGTGGTCCCCCACATTACTGATGCTATCCAAGACTGGGTTATGAATCAAGCCA
AGGTGTCTGTGGATGGCAATAAGGAAGATCCCCAGATATGTGTTATCGAGCTGGGAGGCACCAT
TGGAGACATCGAAGGGATGGCATTTGTGGAAGCATTCCGACAATTCCAGTTTAAAGCAAAGAGA
GAGAATTTCTATAATATTCATGTCAGCCTTGTGCCACAGCCCAGTGCTACTGGAGAACAAAAAA
CCAAGCCTACACAAAACAGTGTCCGTGCGCTGAGAGGGCTGGGCTTGTCTCCGGATCTGATTGT
CTGCCGAAGTTCAACACCCATTGAGATGGCTGTGAAGGAGAAGATTTCTATGTTTTGTCACGTG
AACCCTGAACAGGTCATCTGTATCCATGATGTTTCTTCCATCTACCGAGTCCCTCTTCTTTTGG
AGGAGCAAGGTGTGGTTAAATATTTTCAAGAGAGATTGGACCTGCCCATCAATGATTGCTCAAA
TAATTTGCTTTTCAAGTGGAAAACCATGGCTGACAGGTATGAAAGATTGCAGAAAATATGTTCC
ATAGCCCTGGTTGGTAAATACACCAAACTCAGGGACTGCTACGCCTCTGTGTTCAAAGCCCTGG
AACACTCAGCCTTGGCCATCAACCACAAGTTGAATCTGATGTACATAGACTCCATTGATCTGGA
GCCAGTCACCAAAGCTGAGGATCCTGTGAAATTCCATGAAGCTTGGCAGAAGCTGTGCTTAGCT
GATGGTATTCTCGTGCCTGGAGGCTTTGGAATCCGAGGAACATTGGGAAAACTCCAGGCAATTT
CTTGGGCAAGGACAAAGAAGATTCCATTTCTGGGAATTTGCCTTGGGATGCAACTGGCAGTGAT
TGAGTTTGCAAGAAACTGCCTGAACTTGAAAGATGCTAATTCTACAGAATTTGATCCAAACACT
CCAGTCCCATTGGTAATTGACATGCCTGAACACAACCCTGGCGATTTGGGAGGAACAATGAGAC
TGGGATTAAGACGAACTGTTTTCACAACTGAAAATTCCATACTGAAGAAGCTTTACGGTGATGT
TCCTTACATAGAAGAAAGACACCGACATCGGTATGAGGTGAACCCTAACCTGATCAACCAATTT
GAGAATAAAGACCTTTGCTTTGTCGGTGAGGATGTGGATGGGAAGAGGATGGAGATTATTGAAT
TGACAGGTCATCCATATTTCATCGGCGTCCAATTCCATCCTGAGTTTTCCTCTAGGCCAATGAA
GCCTTCCCCTCCGTACCTGGGACTCTTACTTGCAGCAACCGGAACTCTGAATACCCATCTGCAA
CAGATGAGCAAACTATCGTACAGTGACATATACAGTGATGCCAGTGATGATAGCTTTTCAGAGG
CGAAGTTTGCTGAGCTGGATATCAACTGAAGCTCTTTCTTGCCTCAGGAATGGCAGAAGCCACC
TAAGAGGCCTCTGAAGTAATTATACTTAAGATGAAAGAATTATCTGAAGAAACCACCACTCTGT
TCCCTAGACATGGGCTGTGAAGATTCAAAGGGAATCTGCAAATGTTTACTTCATGAAACAGAAC
CAAAGGGATTCTTTTCTTTTCCCTCCAGAGGCAGCCTGTAGTATTCACACATTTCTGTACTTAA
TTAAATGTAATTCAACAGCAATCCCGGGGTAGAAAGTGTTTTTGTTTTGTCCAGAACATGGTGA
GTTCAAGGTGGTAAGCAGGAATTGGGGGAACTTTGTCTTCACAGTATTGCATGGGTAAGGTGGT
GGGCATATGCTATAACCAATTTTGGGTTTAAAAATGAGTTGTTCTCTTACCTGGACATGAACTA
CAGGTTAGTATGGGAGTTAAGATTATTTTACGTTCTCATTCTGTTTATTTCCAGTAAGTCTATT
TTCTCAAATATAAAATGTAAAAGGGAATCTGAAAACTTAGGAATCGGGGTAAGTAGGGCTGAGT
TCCATCTCTTCAACCCACACAGAGCAGCAAACCAGTACCCACAGGTCTTCTGACCCCAGCATGT
GCACACACAGACACACCCACTAAAAATCATTAAAAACAAAACAATAATCACTTTGTTTTTTTAA
ATTCAAATTACTTTTTATTATTCTTTTGACAACTTCGTACATACATAGAATTATTTTGGTCATT
TAAAAACTTTTTTCAGAGTGATTTATTTATTTATTATTTTTCATATCCCAGTTGTTGCCCCCTC
TTTTTATTACACTCTCACTCCATTCTCACTGAAACCCTTCTTCTCAAATAAGTCCCTCTTTTAT
TTTCATGTCTTTTCTGTTGCTTTGTCTTTTTCTTATTGAGATAGCATCTCACTCCGTAGTGCAA
GCTAACATGGGACTTACTGTGTAGTCGGCTATAGTCTTGGCTCACTGTGATCCTCTGGCCTCAG
CCTCTCATGAGTTAGGATTATAGGTGTGAGCTGTTCTTCTGTGCTCAAGATCAGCATTTTTGTT
TGGTTTTTGAGACAAGTTTTTGCTACGTAGCCCTGGTTGTACTGGAACTCACTGTGGCTGGCCT
TAAAGTCACAAAGATATGCCATTCTCTGCCTCTCGAGTGCTGGAGTTAAAGGCATATACAAACA
CACTTGGCTAACTTTTTTTTCAGTTGGAAAAATAACAATTGTAAAGTGAATTATGCATTGGCAT
TTACTGATACTTCACAGCTCTCAGTTTTATGAAATTACTCCAGAATTAACCTCTGTTCCCATGG
GCAGTCACTCCAGAGGTATTTCTTTCTGTCCTCATCCTCTGGCAACTCTTGTAACTACATTGAT
CAAGGCAACTTGGAAATAAAAGAAAGCACTGATCAACCTCTA

hide sequence

RefSeq Acc Id:

XM_006256897 ⟹ XP_006256959

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	35,277,658 - 35,412,028 (-)	NCBI
mRatBN7.2	X	31,645,873 - 31,780,259 (-)	NCBI
Rnor_6.0	X	33,383,087 - 33,516,373 (-)	NCBI
Rnor_5.0	X	33,730,550 - 33,870,224 (-)	NCBI

Sequence:

show sequence

AGTGTGGACTAGGGCCAAGGGCGTCTAGAGCGGAGGGTGATGGGAGCTGCCTGTGCCGTAGGGA
ACACTTTTTAGGCGCTTGTTTTGTACCACCGCTGGAACTCAACGCTGCAGCACTCCTAATTTCA
CAACCAGCGTGAGTCAGCTGGGCGGGCTGCAGGACCGCGAGGGGAAGATTGCATCTGGGTATTG
GGAGTCACCCATTTGCCCGCCAATGAAGTATATCCTGGTTACTGGTGGGGTCATCTCAGGCATT
GGTAAAGGGATCATCGCCAGCAGCATTGGGACCATTCTCAAGTCATGTGGACTCCGAGTAACCG
CCATCAAGATCGACCCCTACATTAACATTGATGCTGGCACTTTCTCACCTTACGAACATGGTGA
AGTATTTGTTTTAAATGATGGTGGAGAAGTTGATTTGGACCTTGGAAATTATGAAAGATTCTTG
GACATTAATCTTTATAAAGACAACAACATCACCACTGGGAAGATATATCAGCATGTGATCAACA
AAGAGAGGCGCGGTGATTATCTGGGGAAAACTGTCCAAGTGGTCCCCCACATTACTGATGCTAT
CCAAGACTGGGTTATGAATCAAGCCAAGGTGTCTGTGGATGGCAATAAGGAAGATCCCCAGATA
TGTGTTATCGAGCTGGGAGGCACCATTGGAGACATCGAAGGGATGGCATTTGTGGAAGCATTCC
GACAATTCCAGTTTAAAGCAAAGAGAGAGAATTTCTATAATATTCATGTCAGCCTTGTGCCACA
GCCCAGTGCTACTGGAGAACAAAAAACCAAGCCTACACAAAACAGTGTCCGTGCGCTGAGAGGG
CTGGGCTTGTCTCCGGATCTGATTGTCTGCCGAAGTTCAACACCCATTGAGATGGCTGTGAAGG
AGAAGATTTCTATGTTTTGTCACGTGAACCCTGAACAGGTCATCTGTATCCATGATGTTTCTTC
CATCTACCGAGTCCCTCTTCTTTTGGAGGAGCAAGGTGTGGTTAAATATTTTCAAGAGAGATTG
GACCTGCCCATCAATGATTGCTCAAATAATTTGCTTTTCAAGTGGAAAACCATGGCTGACAGGT
ATGAAAGATTGCAGAAAATATGTTCCATAGCCCTGGTTGGTAAATACACCAAACTCAGGGACTG
CTACGCCTCTGTGTTCAAAGCCCTGGAACACTCAGCCTTGGCCATCAACCACAAGTTGAATCTG
ATGTACATAGACTCCATTGATCTGGAGCCAGTCACCAAAGCTGAGGATCCTGTGAAATTCCATG
AAGCTTGGCAGAAGCTGTGCTTAGCTGATGGTATTCTCGTGCCTGGAGGCTTTGGAATCCGAGG
AACATTGGGAAAACTCCAGGCAATTTCTTGGGCAAGGACAAAGAAGATTCCATTTCTGGGAATT
TGCCTTGGGATGCAACTGGCAGTGATTGAGTTTGCAAGAAACTGCCTGAACTTGAAAGATGCTA
ATTCTACAGAATTTGATCCAAACACTCCAGTCCCATTGGTAATTGACATGCCTGAACACAACCC
TGGCGATTTGGGAGGAACAATGAGACTGGGATTAAGACGAACTGTTTTCACAACTGAAAATTCC
ATACTGAAGAAGCTTTACGGTGATGTTCCTTACATAGAAGAAAGACACCGACATCGGTATGAGG
TGAACCCTAACCTGATCAACCAATTTGAGAATAAAGACCTTTGCTTTGTCGGTGAGGATGTGGA
TGGGAAGAGGATGGAGATTATTGAATTGACAGGTCATCCATATTTCATCGGCGTCCAATTCCAT
CCTGAGTTTTCCTCTAGGCCAATGAAGCCTTCCCCTCCGTACCTGGGACTCTTACTTGCAGCAA
CCGGAACTCTGAATACCCATCTGCAACAGATGAGCAAACTATCGTACAGTGACATATACAGTGA
TGCCAGTGATGATAGCTTTTCAGAGGCGAAGTTTGCTGAGCTGGATATCAACTGAAGCTCTTTC
TTGCCTCAGGAATGGCAGAAGCCACCTAAGAGGCCTCTGAAGTAATTATACTTAAGATGAAAGA
ATTATCTGAAGAAACCACCACTCTGTTCCCTAGACATGGGCTGTGAAGATTCAAAGGGAATCTG
CAAATGTTTACTTCATGAAACAGAACCAAAGGGATTCTTTTCTTTTCCCTCCAGAGGCAGCCTG
TAGTATTCACACATTTCTGTACTTAATTAAATGTAATTCAACAGCAATCCCGGGGTAGAAAGTG
TTTTTGTTTTGTCCAGAACATGGTGAGTTCAAGGTGGTAAGCAGGAATTGGGGGAACTTTGTCT
TCACAGTATTGCATGGGTAAGGTGGTGGGCATATGCTATAACCAATTTTGGGTTTAAAAATGAG
TTGTTCTCTTACCTGGACATGAACTACAGGTTAGTATGGGAGTTAAGATTATTTTACGTTCTCA
TTCTGTTTATTTCCAGTAAGTCTATTTTCTCAAATATAAAATGTAAAAGGGAATCTGAAAACTT
AGGAATCGGGGTAAGTAGGGCTGAGTTCCATCTCTTCAACCCACACAGAGCAGCAAACCAGTAC
CCACAGGTCTTCTGACCCCAGCATGTGCACACACAGACACACCCACTAAAAATCATTAAAAACA
AAACAATAATCACTTTGTTTTTTTAAATTCAAATTACTTTTTATTATTCTTTTGACAACTTCGT
ACATACATAGAATTATTTTGGTCATTTAAAAACTTTTTTCAGAGTGATTTATTTATTTATTATT
TTTCATATCCCAGTTGTTGCCCCCTCTTTTTATTACACTCTCACTCCATTCTCACTGAAACCCT
TCTTCTCAAATAAGTCCCTCTTTTATTTTCATGTCTTTTCTGTTGCTTTGTCTTTTTCTTATTG
AGATAGCATCTCACTCCGTAGTGCAAGCTAACATGGGACTTACTGTGTAGTCGGCTATAGTCTT
GGCTCACTGTGATCCTCTGGCCTCAGCCTCTCATGAGTTAGGATTATAGGTGTGAGCTGTTCTT
CTGTGCTCAAGATCAGCATTTTTGTTTGGTTTTTGAGACAAGTTTTTGCTACGTAGCCCTGGTT
GTACTGGAACTCACTGTGGCTGGCCTTAAAGTCACAAAGATATGCCATTCTCTGCCTCTCGAGT
GCTGGAGTTAAAGGCATATACAAACACACTTGGCTAACTTTTTTTTCAGTTGGAAAAATAACAA
TTGTAAAGTGAATTATGCATTGGCATTTACTGATACTTCACAGCTCTCAGTTTTATGAAATTAC
TCCAGAATTAACCTCTGTTCCCATGGGCAGTCACTCCAGAGGTATTTCTTTCTGTCCTCATCCT
CTGGCAACTCTTGTAACTACATTGATCAAGGCAACTTGGAAATAAAAGAAAGCACTGATCAACC
TCTA

hide sequence

RefSeq Acc Id:

XM_006256898 ⟹ XP_006256960

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	35,277,658 - 35,412,047 (-)	NCBI
mRatBN7.2	X	31,645,873 - 31,780,273 (-)	NCBI
Rnor_6.0	X	33,383,087 - 33,516,373 (-)	NCBI
Rnor_5.0	X	33,730,550 - 33,870,224 (-)	NCBI

Sequence:

show sequence

AGTGTGGACTAGGGCCAAGGGCGTCTAGAGCGGAGGGTGATGGGAGCTGCCTGTGCCGTAGGGA
ACACTTTTTAGGCGCTTGTTTTGTACCACCGCTGGAACTCAACGCTGCAGCACTCCTAATTTCA
CAACCAGCATTGCATCTGGGTATTGGGAGTCACCCATTTGCCCGCCAATGAAGTATATCCTGGT
TACTGGTGGGGTCATCTCAGGCATTGGTAAAGGGATCATCGCCAGCAGCATTGGGACCATTCTC
AAGTCATGTGGACTCCGAGTAACCGCCATCAAGATCGACCCCTACATTAACATTGATGCTGGCA
CTTTCTCACCTTACGAACATGGTGAAGTATTTGTTTTAAATGATGGTGGAGAAGTTGATTTGGA
CCTTGGAAATTATGAAAGATTCTTGGACATTAATCTTTATAAAGACAACAACATCACCACTGGG
AAGATATATCAGCATGTGATCAACAAAGAGAGGCGCGGTGATTATCTGGGGAAAACTGTCCAAG
TGGTCCCCCACATTACTGATGCTATCCAAGACTGGGTTATGAATCAAGCCAAGGTGTCTGTGGA
TGGCAATAAGGAAGATCCCCAGATATGTGTTATCGAGCTGGGAGGCACCATTGGAGACATCGAA
GGGATGGCATTTGTGGAAGCATTCCGACAATTCCAGTTTAAAGCAAAGAGAGAGAATTTCTATA
ATATTCATGTCAGCCTTGTGCCACAGCCCAGTGCTACTGGAGAACAAAAAACCAAGCCTACACA
AAACAGTGTCCGTGCGCTGAGAGGGCTGGGCTTGTCTCCGGATCTGATTGTCTGCCGAAGTTCA
ACACCCATTGAGATGGCTGTGAAGGAGAAGATTTCTATGTTTTGTCACGTGAACCCTGAACAGG
TCATCTGTATCCATGATGTTTCTTCCATCTACCGAGTCCCTCTTCTTTTGGAGGAGCAAGGTGT
GGTTAAATATTTTCAAGAGAGATTGGACCTGCCCATCAATGATTGCTCAAATAATTTGCTTTTC
AAGTGGAAAACCATGGCTGACAGGTATGAAAGATTGCAGAAAATATGTTCCATAGCCCTGGTTG
GTAAATACACCAAACTCAGGGACTGCTACGCCTCTGTGTTCAAAGCCCTGGAACACTCAGCCTT
GGCCATCAACCACAAGTTGAATCTGATGTACATAGACTCCATTGATCTGGAGCCAGTCACCAAA
GCTGAGGATCCTGTGAAATTCCATGAAGCTTGGCAGAAGCTGTGCTTAGCTGATGGTATTCTCG
TGCCTGGAGGCTTTGGAATCCGAGGAACATTGGGAAAACTCCAGGCAATTTCTTGGGCAAGGAC
AAAGAAGATTCCATTTCTGGGAATTTGCCTTGGGATGCAACTGGCAGTGATTGAGTTTGCAAGA
AACTGCCTGAACTTGAAAGATGCTAATTCTACAGAATTTGATCCAAACACTCCAGTCCCATTGG
TAATTGACATGCCTGAACACAACCCTGGCGATTTGGGAGGAACAATGAGACTGGGATTAAGACG
AACTGTTTTCACAACTGAAAATTCCATACTGAAGAAGCTTTACGGTGATGTTCCTTACATAGAA
GAAAGACACCGACATCGGTATGAGGTGAACCCTAACCTGATCAACCAATTTGAGAATAAAGACC
TTTGCTTTGTCGGTGAGGATGTGGATGGGAAGAGGATGGAGATTATTGAATTGACAGGTCATCC
ATATTTCATCGGCGTCCAATTCCATCCTGAGTTTTCCTCTAGGCCAATGAAGCCTTCCCCTCCG
TACCTGGGACTCTTACTTGCAGCAACCGGAACTCTGAATACCCATCTGCAACAGATGAGCAAAC
TATCGTACAGTGACATATACAGTGATGCCAGTGATGATAGCTTTTCAGAGGCGAAGTTTGCTGA
GCTGGATATCAACTGAAGCTCTTTCTTGCCTCAGGAATGGCAGAAGCCACCTAAGAGGCCTCTG
AAGTAATTATACTTAAGATGAAAGAATTATCTGAAGAAACCACCACTCTGTTCCCTAGACATGG
GCTGTGAAGATTCAAAGGGAATCTGCAAATGTTTACTTCATGAAACAGAACCAAAGGGATTCTT
TTCTTTTCCCTCCAGAGGCAGCCTGTAGTATTCACACATTTCTGTACTTAATTAAATGTAATTC
AACAGCAATCCCGGGGTAGAAAGTGTTTTTGTTTTGTCCAGAACATGGTGAGTTCAAGGTGGTA
AGCAGGAATTGGGGGAACTTTGTCTTCACAGTATTGCATGGGTAAGGTGGTGGGCATATGCTAT
AACCAATTTTGGGTTTAAAAATGAGTTGTTCTCTTACCTGGACATGAACTACAGGTTAGTATGG
GAGTTAAGATTATTTTACGTTCTCATTCTGTTTATTTCCAGTAAGTCTATTTTCTCAAATATAA
AATGTAAAAGGGAATCTGAAAACTTAGGAATCGGGGTAAGTAGGGCTGAGTTCCATCTCTTCAA
CCCACACAGAGCAGCAAACCAGTACCCACAGGTCTTCTGACCCCAGCATGTGCACACACAGACA
CACCCACTAAAAATCATTAAAAACAAAACAATAATCACTTTGTTTTTTTAAATTCAAATTACTT
TTTATTATTCTTTTGACAACTTCGTACATACATAGAATTATTTTGGTCATTTAAAAACTTTTTT
CAGAGTGATTTATTTATTTATTATTTTTCATATCCCAGTTGTTGCCCCCTCTTTTTATTACACT
CTCACTCCATTCTCACTGAAACCCTTCTTCTCAAATAAGTCCCTCTTTTATTTTCATGTCTTTT
CTGTTGCTTTGTCTTTTTCTTATTGAGATAGCATCTCACTCCGTAGTGCAAGCTAACATGGGAC
TTACTGTGTAGTCGGCTATAGTCTTGGCTCACTGTGATCCTCTGGCCTCAGCCTCTCATGAGTT
AGGATTATAGGTGTGAGCTGTTCTTCTGTGCTCAAGATCAGCATTTTTGTTTGGTTTTTGAGAC
AAGTTTTTGCTACGTAGCCCTGGTTGTACTGGAACTCACTGTGGCTGGCCTTAAAGTCACAAAG
ATATGCCATTCTCTGCCTCTCGAGTGCTGGAGTTAAAGGCATATACAAACACACTTGGCTAACT
TTTTTTTCAGTTGGAAAAATAACAATTGTAAAGTGAATTATGCATTGGCATTTACTGATACTTC
ACAGCTCTCAGTTTTATGAAATTACTCCAGAATTAACCTCTGTTCCCATGGGCAGTCACTCCAG
AGGTATTTCTTTCTGTCCTCATCCTCTGGCAACTCTTGTAACTACATTGATCAAGGCAACTTGG
AAATAAAAGAAAGCACTGATCAACCTCTA

hide sequence

RefSeq Acc Id:

XM_006256899 ⟹ XP_006256961

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	35,277,658 - 35,411,313 (-)	NCBI
mRatBN7.2	X	31,645,873 - 31,779,657 (-)	NCBI
Rnor_6.0	X	33,383,087 - 33,515,804 (-)	NCBI
Rnor_5.0	X	33,730,550 - 33,870,224 (-)	NCBI

Sequence:

show sequence

CAGTGCTCTGTCGGAGTCTCTCGCCTGGAGGTGGCTAGTGACCCGGGATCCAAACCGACACGTC
CCTGGGGTGTGCCTCTCCGCTCTGGATTCCGCGCCCCAAGCCCTATTTTTCTCTGCTTTGTGGA
GACCCGAGATGGCGTTGGCGGAAGTGAAACCACCAGACTGAGAGTGGGGCGAGGTCCGCCTAGT
TGATTTTGAGTAGGCTGTCTGCACTAGCGTACAGGTTAAACAACAACCCTTTTAGCTGGCCTCG
CGTACTAAGCTCTACCGCCTGGGGGAAGCGGATGACATTTTCAAAACAATTGATGTGTACTTTA
TGCTCATGAAATATTCCATTTCACATCTGGTCTGTGGGGTTTGACCAGATTTAGACCGTTTCCA
CCAACCCACAGAGGTCCTTGGTGCTCTTTTTCTAGTCAGTCCATTTTCCTACCCCGCCCCCTTG
CACTGTTTTGATCATCGGCTTGGCTTAGTTTTGCTCTTCAGAAATCGAGCTTATCCAATTGCAT
CTGGGTATTGGGAGTCACCCATTTGCCCGCCAATGAAGTATATCCTGGTTACTGGTGGGGTCAT
CTCAGGCATTGGTAAAGGGATCATCGCCAGCAGCATTGGGACCATTCTCAAGTCATGTGGACTC
CGAGTAACCGCCATCAAGATCGACCCCTACATTAACATTGATGCTGGCACTTTCTCACCTTACG
AACATGGTGAAGTATTTGTTTTAAATGATGGTGGAGAAGTTGATTTGGACCTTGGAAATTATGA
AAGATTCTTGGACATTAATCTTTATAAAGACAACAACATCACCACTGGGAAGATATATCAGCAT
GTGATCAACAAAGAGAGGCGCGGTGATTATCTGGGGAAAACTGTCCAAGTGGTCCCCCACATTA
CTGATGCTATCCAAGACTGGGTTATGAATCAAGCCAAGGTGTCTGTGGATGGCAATAAGGAAGA
TCCCCAGATATGTGTTATCGAGCTGGGAGGCACCATTGGAGACATCGAAGGGATGGCATTTGTG
GAAGCATTCCGACAATTCCAGTTTAAAGCAAAGAGAGAGAATTTCTATAATATTCATGTCAGCC
TTGTGCCACAGCCCAGTGCTACTGGAGAACAAAAAACCAAGCCTACACAAAACAGTGTCCGTGC
GCTGAGAGGGCTGGGCTTGTCTCCGGATCTGATTGTCTGCCGAAGTTCAACACCCATTGAGATG
GCTGTGAAGGAGAAGATTTCTATGTTTTGTCACGTGAACCCTGAACAGGTCATCTGTATCCATG
ATGTTTCTTCCATCTACCGAGTCCCTCTTCTTTTGGAGGAGCAAGGTGTGGTTAAATATTTTCA
AGAGAGATTGGACCTGCCCATCAATGATTGCTCAAATAATTTGCTTTTCAAGTGGAAAACCATG
GCTGACAGGTATGAAAGATTGCAGAAAATATGTTCCATAGCCCTGGTTGGTAAATACACCAAAC
TCAGGGACTGCTACGCCTCTGTGTTCAAAGCCCTGGAACACTCAGCCTTGGCCATCAACCACAA
GTTGAATCTGATGTACATAGACTCCATTGATCTGGAGCCAGTCACCAAAGCTGAGGATCCTGTG
AAATTCCATGAAGCTTGGCAGAAGCTGTGCTTAGCTGATGGTATTCTCGTGCCTGGAGGCTTTG
GAATCCGAGGAACATTGGGAAAACTCCAGGCAATTTCTTGGGCAAGGACAAAGAAGATTCCATT
TCTGGGAATTTGCCTTGGGATGCAACTGGCAGTGATTGAGTTTGCAAGAAACTGCCTGAACTTG
AAAGATGCTAATTCTACAGAATTTGATCCAAACACTCCAGTCCCATTGGTAATTGACATGCCTG
AACACAACCCTGGCGATTTGGGAGGAACAATGAGACTGGGATTAAGACGAACTGTTTTCACAAC
TGAAAATTCCATACTGAAGAAGCTTTACGGTGATGTTCCTTACATAGAAGAAAGACACCGACAT
CGGTATGAGGTGAACCCTAACCTGATCAACCAATTTGAGAATAAAGACCTTTGCTTTGTCGGTG
AGGATGTGGATGGGAAGAGGATGGAGATTATTGAATTGACAGGTCATCCATATTTCATCGGCGT
CCAATTCCATCCTGAGTTTTCCTCTAGGCCAATGAAGCCTTCCCCTCCGTACCTGGGACTCTTA
CTTGCAGCAACCGGAACTCTGAATACCCATCTGCAACAGATGAGCAAACTATCGTACAGTGACA
TATACAGTGATGCCAGTGATGATAGCTTTTCAGAGGCGAAGTTTGCTGAGCTGGATATCAACTG
AAGCTCTTTCTTGCCTCAGGAATGGCAGAAGCCACCTAAGAGGCCTCTGAAGTAATTATACTTA
AGATGAAAGAATTATCTGAAGAAACCACCACTCTGTTCCCTAGACATGGGCTGTGAAGATTCAA
AGGGAATCTGCAAATGTTTACTTCATGAAACAGAACCAAAGGGATTCTTTTCTTTTCCCTCCAG
AGGCAGCCTGTAGTATTCACACATTTCTGTACTTAATTAAATGTAATTCAACAGCAATCCCGGG
GTAGAAAGTGTTTTTGTTTTGTCCAGAACATGGTGAGTTCAAGGTGGTAAGCAGGAATTGGGGG
AACTTTGTCTTCACAGTATTGCATGGGTAAGGTGGTGGGCATATGCTATAACCAATTTTGGGTT
TAAAAATGAGTTGTTCTCTTACCTGGACATGAACTACAGGTTAGTATGGGAGTTAAGATTATTT
TACGTTCTCATTCTGTTTATTTCCAGTAAGTCTATTTTCTCAAATATAAAATGTAAAAGGGAAT
CTGAAAACTTAGGAATCGGGGTAAGTAGGGCTGAGTTCCATCTCTTCAACCCACACAGAGCAGC
AAACCAGTACCCACAGGTCTTCTGACCCCAGCATGTGCACACACAGACACACCCACTAAAAATC
ATTAAAAACAAAACAATAATCACTTTGTTTTTTTAAATTCAAATTACTTTTTATTATTCTTTTG
ACAACTTCGTACATACATAGAATTATTTTGGTCATTTAAAAACTTTTTTCAGAGTGATTTATTT
ATTTATTATTTTTCATATCCCAGTTGTTGCCCCCTCTTTTTATTACACTCTCACTCCATTCTCA
CTGAAACCCTTCTTCTCAAATAAGTCCCTCTTTTATTTTCATGTCTTTTCTGTTGCTTTGTCTT
TTTCTTATTGAGATAGCATCTCACTCCGTAGTGCAAGCTAACATGGGACTTACTGTGTAGTCGG
CTATAGTCTTGGCTCACTGTGATCCTCTGGCCTCAGCCTCTCATGAGTTAGGATTATAGGTGTG
AGCTGTTCTTCTGTGCTCAAGATCAGCATTTTTGTTTGGTTTTTGAGACAAGTTTTTGCTACGT
AGCCCTGGTTGTACTGGAACTCACTGTGGCTGGCCTTAAAGTCACAAAGATATGCCATTCTCTG
CCTCTCGAGTGCTGGAGTTAAAGGCATATACAAACACACTTGGCTAACTTTTTTTTCAGTTGGA
AAAATAACAATTGTAAAGTGAATTATGCATTGGCATTTACTGATACTTCACAGCTCTCAGTTTT
ATGAAATTACTCCAGAATTAACCTCTGTTCCCATGGGCAGTCACTCCAGAGGTATTTCTTTCTG
TCCTCATCCTCTGGCAACTCTTGTAACTACATTGATCAAGGCAACTTGGAAATAAAAGAAAGCA
CTGATCAACCTCTA

hide sequence

RefSeq Acc Id:

XM_006256900 ⟹ XP_006256962

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	35,277,658 - 35,412,354 (-)	NCBI
mRatBN7.2	X	31,645,873 - 31,780,583 (-)	NCBI
Rnor_6.0	X	33,383,087 - 33,516,682 (-)	NCBI
Rnor_5.0	X	33,730,550 - 33,870,224 (-)	NCBI

Sequence:

show sequence

TTCATTTACCAATGGACATGTAGAAGGGCAGTGAGCTCCTAGACAAGAATTCTGCTTTGTTTGC
CTAGACAAGAATTCTGCTTTGTTTTTCTCCTTTCCCATCTTTTGCTGTGCTGGGCTGCACTGTA
GCGGATGGTTAAACATTTGTGATTGCATCTGGGTATTGGGAGTCACCCATTTGCCCGCCAATGA
AGTATATCCTGGTTACTGGTGGGGTCATCTCAGGCATTGGTAAAGGGATCATCGCCAGCAGCAT
TGGGACCATTCTCAAGTCATGTGGACTCCGAGTAACCGCCATCAAGATCGACCCCTACATTAAC
ATTGATGCTGGCACTTTCTCACCTTACGAACATGGTGAAGTATTTGTTTTAAATGATGGTGGAG
AAGTTGATTTGGACCTTGGAAATTATGAAAGATTCTTGGACATTAATCTTTATAAAGACAACAA
CATCACCACTGGGAAGATATATCAGCATGTGATCAACAAAGAGAGGCGCGGTGATTATCTGGGG
AAAACTGTCCAAGTGGTCCCCCACATTACTGATGCTATCCAAGACTGGGTTATGAATCAAGCCA
AGGTGTCTGTGGATGGCAATAAGGAAGATCCCCAGATATGTGTTATCGAGCTGGGAGGCACCAT
TGGAGACATCGAAGGGATGGCATTTGTGGAAGCATTCCGACAATTCCAGTTTAAAGCAAAGAGA
GAGAATTTCTATAATATTCATGTCAGCCTTGTGCCACAGCCCAGTGCTACTGGAGAACAAAAAA
CCAAGCCTACACAAAACAGTGTCCGTGCGCTGAGAGGGCTGGGCTTGTCTCCGGATCTGATTGT
CTGCCGAAGTTCAACACCCATTGAGATGGCTGTGAAGGAGAAGATTTCTATGTTTTGTCACGTG
AACCCTGAACAGGTCATCTGTATCCATGATGTTTCTTCCATCTACCGAGTCCCTCTTCTTTTGG
AGGAGCAAGGTGTGGTTAAATATTTTCAAGAGAGATTGGACCTGCCCATCAATGATTGCTCAAA
TAATTTGCTTTTCAAGTGGAAAACCATGGCTGACAGGTATGAAAGATTGCAGAAAATATGTTCC
ATAGCCCTGGTTGGTAAATACACCAAACTCAGGGACTGCTACGCCTCTGTGTTCAAAGCCCTGG
AACACTCAGCCTTGGCCATCAACCACAAGTTGAATCTGATGTACATAGACTCCATTGATCTGGA
GCCAGTCACCAAAGCTGAGGATCCTGTGAAATTCCATGAAGCTTGGCAGAAGCTGTGCTTAGCT
GATGGTATTCTCGTGCCTGGAGGCTTTGGAATCCGAGGAACATTGGGAAAACTCCAGGCAATTT
CTTGGGCAAGGACAAAGAAGATTCCATTTCTGGGAATTTGCCTTGGGATGCAACTGGCAGTGAT
TGAGTTTGCAAGAAACTGCCTGAACTTGAAAGATGCTAATTCTACAGAATTTGATCCAAACACT
CCAGTCCCATTGGTAATTGACATGCCTGAACACAACCCTGGCGATTTGGGAGGAACAATGAGAC
TGGGATTAAGACGAACTGTTTTCACAACTGAAAATTCCATACTGAAGAAGCTTTACGGTGATGT
TCCTTACATAGAAGAAAGACACCGACATCGGTATGAGGTGAACCCTAACCTGATCAACCAATTT
GAGAATAAAGACCTTTGCTTTGTCGGTGAGGATGTGGATGGGAAGAGGATGGAGATTATTGAAT
TGACAGGTCATCCATATTTCATCGGCGTCCAATTCCATCCTGAGTTTTCCTCTAGGCCAATGAA
GCCTTCCCCTCCGTACCTGGGACTCTTACTTGCAGCAACCGGAACTCTGAATACCCATCTGCAA
CAGATGAGCAAACTATCGTACAGTGACATATACAGTGATGCCAGTGATGATAGCTTTTCAGAGG
CGAAGTTTGCTGAGCTGGATATCAACTGAAGCTCTTTCTTGCCTCAGGAATGGCAGAAGCCACC
TAAGAGGCCTCTGAAGTAATTATACTTAAGATGAAAGAATTATCTGAAGAAACCACCACTCTGT
TCCCTAGACATGGGCTGTGAAGATTCAAAGGGAATCTGCAAATGTTTACTTCATGAAACAGAAC
CAAAGGGATTCTTTTCTTTTCCCTCCAGAGGCAGCCTGTAGTATTCACACATTTCTGTACTTAA
TTAAATGTAATTCAACAGCAATCCCGGGGTAGAAAGTGTTTTTGTTTTGTCCAGAACATGGTGA
GTTCAAGGTGGTAAGCAGGAATTGGGGGAACTTTGTCTTCACAGTATTGCATGGGTAAGGTGGT
GGGCATATGCTATAACCAATTTTGGGTTTAAAAATGAGTTGTTCTCTTACCTGGACATGAACTA
CAGGTTAGTATGGGAGTTAAGATTATTTTACGTTCTCATTCTGTTTATTTCCAGTAAGTCTATT
TTCTCAAATATAAAATGTAAAAGGGAATCTGAAAACTTAGGAATCGGGGTAAGTAGGGCTGAGT
TCCATCTCTTCAACCCACACAGAGCAGCAAACCAGTACCCACAGGTCTTCTGACCCCAGCATGT
GCACACACAGACACACCCACTAAAAATCATTAAAAACAAAACAATAATCACTTTGTTTTTTTAA
ATTCAAATTACTTTTTATTATTCTTTTGACAACTTCGTACATACATAGAATTATTTTGGTCATT
TAAAAACTTTTTTCAGAGTGATTTATTTATTTATTATTTTTCATATCCCAGTTGTTGCCCCCTC
TTTTTATTACACTCTCACTCCATTCTCACTGAAACCCTTCTTCTCAAATAAGTCCCTCTTTTAT
TTTCATGTCTTTTCTGTTGCTTTGTCTTTTTCTTATTGAGATAGCATCTCACTCCGTAGTGCAA
GCTAACATGGGACTTACTGTGTAGTCGGCTATAGTCTTGGCTCACTGTGATCCTCTGGCCTCAG
CCTCTCATGAGTTAGGATTATAGGTGTGAGCTGTTCTTCTGTGCTCAAGATCAGCATTTTTGTT
TGGTTTTTGAGACAAGTTTTTGCTACGTAGCCCTGGTTGTACTGGAACTCACTGTGGCTGGCCT
TAAAGTCACAAAGATATGCCATTCTCTGCCTCTCGAGTGCTGGAGTTAAAGGCATATACAAACA
CACTTGGCTAACTTTTTTTTCAGTTGGAAAAATAACAATTGTAAAGTGAATTATGCATTGGCAT
TTACTGATACTTCACAGCTCTCAGTTTTATGAAATTACTCCAGAATTAACCTCTGTTCCCATGG
GCAGTCACTCCAGAGGTATTTCTTTCTGTCCTCATCCTCTGGCAACTCTTGTAACTACATTGAT
CAAGGCAACTTGGAAATAAAAGAAAGCACTGATCAACCTCTA

hide sequence

Protein Sequences


Protein RefSeqs	NP_001030170	(Get FASTA)	NCBI Sequence Viewer
	XP_006256958	(Get FASTA)	NCBI Sequence Viewer
	XP_006256959	(Get FASTA)	NCBI Sequence Viewer
	XP_006256960	(Get FASTA)	NCBI Sequence Viewer
	XP_006256961	(Get FASTA)	NCBI Sequence Viewer
	XP_006256962	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH85358	(Get FASTA)	NCBI Sequence Viewer
	AAH85949	(Get FASTA)	NCBI Sequence Viewer
	EDL90497	(Get FASTA)	NCBI Sequence Viewer
	EDL90498	(Get FASTA)	NCBI Sequence Viewer
	EDL90499	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000055810
	ENSRNOP00000055810.3
	ENSRNOP00000083758.1
	ENSRNOP00000084727
	ENSRNOP00000084727.1
	ENSRNOP00000097478.1
GenBank Protein	Q5U2N0	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:

NP_001030170 ⟸ NM_001034998

- UniProtKB:

Q5U3X4 (UniProtKB/Swiss-Prot), Q5U2N0 (UniProtKB/Swiss-Prot), A0A8L2QRH2 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDG
GEVDLDLGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAIQDWVMNQ
AKVSVDGNKEDPQICVIELGGTIGDIEGMAFVEAFRQFQFKAKRENFYNIHVSLVPQPSATGEQ
KTKPTQNSVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQVICIHDVSSIYRVPLL
LEEQGVVKYFQERLDLPINDCSNNLLFKWKTMADRYERLQKICSIALVGKYTKLRDCYASVFKA
LEHSALAINHKLNLMYIDSIDLEPVTKAEDPVKFHEAWQKLCLADGILVPGGFGIRGTLGKLQA
ISWARTKKIPFLGICLGMQLAVIEFARNCLNLKDANSTEFDPNTPVPLVIDMPEHNPGDLGGTM
RLGLRRTVFTTENSILKKLYGDVPYIEERHRHRYEVNPNLINQFENKDLCFVGEDVDGKRMEII
ELTGHPYFIGVQFHPEFSSRPMKPSPPYLGLLLAATGTLNTHLQQMSKLSYSDIYSDASDDSFS
EAKFAELDIN

hide sequence

RefSeq Acc Id:	XP_006256962 ⟸ XM_006256900
- Peptide Label:	isoform X1
- UniProtKB:	Q5U3X4 (UniProtKB/Swiss-Prot), Q5U2N0 (UniProtKB/Swiss-Prot), A0A8L2QRH2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDG GEVDLDLGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAIQDWVMNQ AKVSVDGNKEDPQICVIELGGTIGDIEGMAFVEAFRQFQFKAKRENFYNIHVSLVPQPSATGEQ KTKPTQNSVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQVICIHDVSSIYRVPLL LEEQGVVKYFQERLDLPINDCSNNLLFKWKTMADRYERLQKICSIALVGKYTKLRDCYASVFKA LEHSALAINHKLNLMYIDSIDLEPVTKAEDPVKFHEAWQKLCLADGILVPGGFGIRGTLGKLQA ISWARTKKIPFLGICLGMQLAVIEFARNCLNLKDANSTEFDPNTPVPLVIDMPEHNPGDLGGTM RLGLRRTVFTTENSILKKLYGDVPYIEERHRHRYEVNPNLINQFENKDLCFVGEDVDGKRMEII ELTGHPYFIGVQFHPEFSSRPMKPSPPYLGLLLAATGTLNTHLQQMSKLSYSDIYSDASDDSFS EAKFAELDIN hide sequence

RefSeq Acc Id:	XP_006256960 ⟸ XM_006256898
- Peptide Label:	isoform X1
- UniProtKB:	Q5U3X4 (UniProtKB/Swiss-Prot), Q5U2N0 (UniProtKB/Swiss-Prot), A0A8L2QRH2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDG GEVDLDLGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAIQDWVMNQ AKVSVDGNKEDPQICVIELGGTIGDIEGMAFVEAFRQFQFKAKRENFYNIHVSLVPQPSATGEQ KTKPTQNSVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQVICIHDVSSIYRVPLL LEEQGVVKYFQERLDLPINDCSNNLLFKWKTMADRYERLQKICSIALVGKYTKLRDCYASVFKA LEHSALAINHKLNLMYIDSIDLEPVTKAEDPVKFHEAWQKLCLADGILVPGGFGIRGTLGKLQA ISWARTKKIPFLGICLGMQLAVIEFARNCLNLKDANSTEFDPNTPVPLVIDMPEHNPGDLGGTM RLGLRRTVFTTENSILKKLYGDVPYIEERHRHRYEVNPNLINQFENKDLCFVGEDVDGKRMEII ELTGHPYFIGVQFHPEFSSRPMKPSPPYLGLLLAATGTLNTHLQQMSKLSYSDIYSDASDDSFS EAKFAELDIN hide sequence

RefSeq Acc Id:	XP_006256959 ⟸ XM_006256897
- Peptide Label:	isoform X1
- UniProtKB:	Q5U3X4 (UniProtKB/Swiss-Prot), Q5U2N0 (UniProtKB/Swiss-Prot), A0A8L2QRH2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDG GEVDLDLGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAIQDWVMNQ AKVSVDGNKEDPQICVIELGGTIGDIEGMAFVEAFRQFQFKAKRENFYNIHVSLVPQPSATGEQ KTKPTQNSVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQVICIHDVSSIYRVPLL LEEQGVVKYFQERLDLPINDCSNNLLFKWKTMADRYERLQKICSIALVGKYTKLRDCYASVFKA LEHSALAINHKLNLMYIDSIDLEPVTKAEDPVKFHEAWQKLCLADGILVPGGFGIRGTLGKLQA ISWARTKKIPFLGICLGMQLAVIEFARNCLNLKDANSTEFDPNTPVPLVIDMPEHNPGDLGGTM RLGLRRTVFTTENSILKKLYGDVPYIEERHRHRYEVNPNLINQFENKDLCFVGEDVDGKRMEII ELTGHPYFIGVQFHPEFSSRPMKPSPPYLGLLLAATGTLNTHLQQMSKLSYSDIYSDASDDSFS EAKFAELDIN hide sequence

RefSeq Acc Id:	XP_006256958 ⟸ XM_006256896
- Peptide Label:	isoform X1
- UniProtKB:	Q5U3X4 (UniProtKB/Swiss-Prot), Q5U2N0 (UniProtKB/Swiss-Prot), A0A8L2QRH2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDG GEVDLDLGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAIQDWVMNQ AKVSVDGNKEDPQICVIELGGTIGDIEGMAFVEAFRQFQFKAKRENFYNIHVSLVPQPSATGEQ KTKPTQNSVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQVICIHDVSSIYRVPLL LEEQGVVKYFQERLDLPINDCSNNLLFKWKTMADRYERLQKICSIALVGKYTKLRDCYASVFKA LEHSALAINHKLNLMYIDSIDLEPVTKAEDPVKFHEAWQKLCLADGILVPGGFGIRGTLGKLQA ISWARTKKIPFLGICLGMQLAVIEFARNCLNLKDANSTEFDPNTPVPLVIDMPEHNPGDLGGTM RLGLRRTVFTTENSILKKLYGDVPYIEERHRHRYEVNPNLINQFENKDLCFVGEDVDGKRMEII ELTGHPYFIGVQFHPEFSSRPMKPSPPYLGLLLAATGTLNTHLQQMSKLSYSDIYSDASDDSFS EAKFAELDIN hide sequence

RefSeq Acc Id:	XP_006256961 ⟸ XM_006256899
- Peptide Label:	isoform X1
- UniProtKB:	Q5U3X4 (UniProtKB/Swiss-Prot), Q5U2N0 (UniProtKB/Swiss-Prot), A0A8L2QRH2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MKYILVTGGVISGIGKGIIASSIGTILKSCGLRVTAIKIDPYINIDAGTFSPYEHGEVFVLNDG GEVDLDLGNYERFLDINLYKDNNITTGKIYQHVINKERRGDYLGKTVQVVPHITDAIQDWVMNQ AKVSVDGNKEDPQICVIELGGTIGDIEGMAFVEAFRQFQFKAKRENFYNIHVSLVPQPSATGEQ KTKPTQNSVRALRGLGLSPDLIVCRSSTPIEMAVKEKISMFCHVNPEQVICIHDVSSIYRVPLL LEEQGVVKYFQERLDLPINDCSNNLLFKWKTMADRYERLQKICSIALVGKYTKLRDCYASVFKA LEHSALAINHKLNLMYIDSIDLEPVTKAEDPVKFHEAWQKLCLADGILVPGGFGIRGTLGKLQA ISWARTKKIPFLGICLGMQLAVIEFARNCLNLKDANSTEFDPNTPVPLVIDMPEHNPGDLGGTM RLGLRRTVFTTENSILKKLYGDVPYIEERHRHRYEVNPNLINQFENKDLCFVGEDVDGKRMEII ELTGHPYFIGVQFHPEFSSRPMKPSPPYLGLLLAATGTLNTHLQQMSKLSYSDIYSDASDDSFS EAKFAELDIN hide sequence

RefSeq Acc Id:

ENSRNOP00000055810 ⟸ ENSRNOT00000059031

RefSeq Acc Id:

ENSRNOP00000083758 ⟸ ENSRNOT00000101251

RefSeq Acc Id:

ENSRNOP00000084727 ⟸ ENSRNOT00000106996

RefSeq Acc Id:

ENSRNOP00000097478 ⟸ ENSRNOT00000102947

Protein Domains

CTP synthase N-terminal Glutamine amidotransferase Glutamine amidotransferase type-1

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5U2N0-F1-model_v2	AlphaFold	Q5U2N0	1-586	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563369	AgrOrtholog
BioCyc Gene	G2FUF-2545	BioCyc
BioCyc Pathway	CITRULBIO-PWY [L-citrulline biosynthesis]	BioCyc
	GLUTAMINDEG-PWY [L-glutamine degradation I]	BioCyc
	PWY-5921 [glutaminyl-tRNAgln biosynthesis via transamidation]	BioCyc
	PWY-7176 [UTP and CTP de novo biosynthesis]	BioCyc
	PWY-7185 [UTP and CTP dephosphorylation I]	BioCyc
BioCyc Pathway Image	CITRULBIO-PWY	BioCyc
	GLUTAMINDEG-PWY	BioCyc
	PWY-5921	BioCyc
	PWY-7176	BioCyc
	PWY-7185	BioCyc
Ensembl Genes	ENSRNOG00000004257	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000059031	ENTREZGENE
	ENSRNOT00000059031.4	UniProtKB/TrEMBL
	ENSRNOT00000101251.1	UniProtKB/TrEMBL
	ENSRNOT00000102947.1	UniProtKB/TrEMBL
	ENSRNOT00000106996.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	3.40.50.880	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7132135	IMAGE-MGC_LOAD
	IMAGE:7300883	IMAGE-MGC_LOAD
InterPro	Class_I_gatase-like	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CTP_synthase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	CTP_synthase_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GATASE	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GATase1_CTP_Synthase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:619580	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:105920	IMAGE-MGC_LOAD
	MGC:95203	IMAGE-MGC_LOAD
NCBI Gene	619580	ENTREZGENE
PANTHER	CTP SYNTHASE 2	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	PTHR11550	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	CTP_synth_N	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	GATase	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Ctps2	PhenoGen
PROSITE	GATASE_TYPE_1	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000004257	RatGTEx
Superfamily-SCOP	SSF52317	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	SSF52540	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
UniProt	A0A8I5ZX96_RAT	UniProtKB/TrEMBL
	A0A8I6A1W6_RAT	UniProtKB/TrEMBL
	A0A8I6AWE7_RAT	UniProtKB/TrEMBL
	A0A8L2QRH2	ENTREZGENE, UniProtKB/TrEMBL
	A6K2N2_RAT	UniProtKB/TrEMBL
	PYRG2_RAT	UniProtKB/Swiss-Prot, ENTREZGENE
	Q5U3X4	ENTREZGENE
UniProt Secondary	Q5U3X4	UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-07-16	Ctps2	CTP synthase 2	Ctps2	CTP synthase II	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-09-26	Ctps2	CTP synthase II	Ctps2	cytidine 5'-triphosphate synthase 2	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-03-03	Ctps2	cytidine 5'-triphosphate synthase 2	Ctps2	cytidine triphosphate synthase II	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	Ctps2	cytidine triphosphate synthase II			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

RGD Manual Annotations

Imported Annotations - KEGG (archival)

BioCyc Pathways