Fbrsl1 (fibrosin-like 1) - Rat Genome Database

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Pathways
Gene: Fbrsl1 (fibrosin-like 1) Rattus norvegicus
Analyze
Symbol: Fbrsl1
Name: fibrosin-like 1
RGD ID: 1563342
Description: Orthologous to human FBRSL1 (fibrosin like 1); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; atrazine.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC304572; RGD1563342; similar to RIKEN cDNA 2410025L10
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81251,891,211 - 51,979,715 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1251,960,790 - 51,979,361 (+)EnsemblGRCr8
mRatBN7.21246,231,466 - 46,320,607 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1246,231,495 - 46,320,357 (+)EnsemblmRatBN7.2
Rnor_6.01252,289,979 - 52,378,726 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,356,832 - 52,377,475 (+)Ensemblrn6Rnor6.0
Rnor_5.01254,025,360 - 54,114,099 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41246,376,650 - 46,465,402 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1247,788,025 - 47,876,348 (+)NCBICelera
Cytogenetic Map12q16NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:22681889  


Genomics

Comparative Map Data
Fbrsl1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81251,891,211 - 51,979,715 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1251,960,790 - 51,979,361 (+)EnsemblGRCr8
mRatBN7.21246,231,466 - 46,320,607 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1246,231,495 - 46,320,357 (+)EnsemblmRatBN7.2
Rnor_6.01252,289,979 - 52,378,726 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1252,356,832 - 52,377,475 (+)Ensemblrn6Rnor6.0
Rnor_5.01254,025,360 - 54,114,099 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41246,376,650 - 46,465,402 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1247,788,025 - 47,876,348 (+)NCBICelera
Cytogenetic Map12q16NCBI
FBRSL1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3812132,490,151 - 132,585,188 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl12132,489,551 - 132,585,188 (+)Ensemblhg38GRCh38
GRCh3712133,066,737 - 133,161,774 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3612131,577,230 - 131,671,848 (+)NCBIBuild 36Build 36hg18NCBI36
Celera12132,766,852 - 132,861,533 (+)NCBICelera
Cytogenetic Map12q24.33NCBI
HuRef12129,865,151 - 129,940,322 (+)NCBIHuRef
CHM1_112132,887,136 - 132,981,443 (+)NCBICHM1_1
T2T-CHM13v2.012132,540,214 - 132,635,194 (+)NCBIT2T-CHM13v2.0
Fbrsl1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm395110,509,617 - 110,596,369 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl5110,509,620 - 110,596,468 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm385110,361,751 - 110,448,503 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl5110,361,754 - 110,448,602 (-)Ensemblmm10GRCm38
MGSCv375110,790,770 - 110,877,522 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv365110,603,089 - 110,627,398 (-)NCBIMGSCv36mm8
Celera5107,486,891 - 107,576,970 (-)NCBICelera
Cytogenetic Map5FNCBI
cM Map553.51NCBI
Fbrsl1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_004955482442,043 - 501,579 (-)NCBIChiLan1.0ChiLan1.0
FBRSL1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v210140,596,207 - 140,694,850 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan112140,592,788 - 140,691,367 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v012129,837,013 - 129,936,801 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.112134,578,858 - 134,655,245 (+)NCBIPanPan1.1PanPan1.1panPan2
FBRSL1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.126535,522 - 613,134 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl26531,248 - 613,183 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha26575,846 - 654,034 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.026592,645 - 670,821 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl26590,971 - 671,370 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.126531,581 - 609,793 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.026620,846 - 698,504 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.026551,598 - 629,301 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fbrsl1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405118122,175,559 - 122,237,406 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049366602,483,674 - 2,545,518 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FBRSL1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1422,887,227 - 22,977,450 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11422,890,052 - 22,977,364 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21424,271,820 - 24,358,390 (+)NCBISscrofa10.2Sscrofa10.2susScr3
FBRSL1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.111127,840,826 - 127,936,739 (+)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666037116,933,585 - 117,031,103 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fbrsl1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla 1.0NW_00462474727,941,035 - 27,957,754 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fbrsl1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11643,910,843 - 43,999,199 (+)NCBIRrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:203
Count of miRNA genes:87
Interacting mature miRNAs:94
Transcripts:ENSRNOT00000050252, ENSRNOT00000065893, ENSRNOT00000071857
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
631560Apr1Acute phase response QTL 16.1orosomucoid 1 amount (VT:0010541)plasma orosomucoid 1 level (CMO:0001467)122480502252308831Rat
2293699Bss49Bone structure and strength QTL 495.610.0001lumbar vertebra size trait (VT:0010518)lumbar vertebra trabecular cross-sectional area (CMO:0001692)121613502952308831Rat
70213Niddm27Non-insulin dependent diabetes mellitus QTL 273.72blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121120049452308831Rat
8552964Pigfal17Plasma insulin-like growth factor 1 level QTL 173.5blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
1331763Wbc2White blood cell count QTL 23.162leukocyte quantity (VT:0000217)total white blood cell count (CMO:0000365)121120049452308831Rat
7411641Foco19Food consumption QTL 1927.70.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
7411547Bw129Body weight QTL 1290.001body mass (VT:0001259)body weight gain (CMO:0000420)61120049452308831Rat
7411643Foco20Food consumption QTL 200.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)122598935552308831Rat
1641928Alcrsp5Alcohol response QTL 5response to alcohol trait (VT:0010489)duration of loss of righting reflex (CMO:0002289)121847304152308831Rat
2303569Gluco44Glucose level QTL 442blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)121847304152308831Rat
1549829Scl48Serum cholesterol level QTL 485blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)121526424852308831Rat
8552912Pigfal6Plasma insulin-like growth factor 1 level QTL 65blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049752308831Rat
10059594Kidm46Kidney mass QTL 463.790.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)121174352852308831Rat
8552918Pigfal7Plasma insulin-like growth factor 1 level QTL 7blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)121120049452308831Rat
7411588Foco6Food consumption QTL 60.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
2300186Bmd59Bone mineral density QTL 597.10.0001lumbar vertebra mineral mass (VT:0010511)volumetric bone mineral density (CMO:0001553)121613502952308831Rat
7411597Foco10Food consumption QTL 100.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)121120049452308831Rat
1331786Kidm11Kidney mass QTL 113.571kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)121618743852308831Rat
631543Bp83Blood pressure QTL 835.8arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)124413955852308831Rat

Markers in Region
D12Got213  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21246,268,534 - 46,268,716 (+)MAPPERmRatBN7.2
Rnor_6.01252,326,655 - 52,326,836NCBIRnor6.0
Rnor_5.01254,062,029 - 54,062,210UniSTSRnor5.0
RGSC_v3.41246,413,301 - 46,413,482UniSTSRGSC3.4
Celera1247,824,416 - 47,824,583UniSTS
Cytogenetic Map12q16UniSTS
BE102353  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21246,253,942 - 46,254,116 (+)MAPPERmRatBN7.2
Rnor_6.01252,312,063 - 52,312,236NCBIRnor6.0
Rnor_5.01254,047,437 - 54,047,610UniSTSRnor5.0
RGSC_v3.41246,398,709 - 46,398,882UniSTSRGSC3.4
Celera1247,809,835 - 47,810,008UniSTS
RH 3.4 Map12796.6UniSTS
Cytogenetic Map12q16UniSTS
RH134791  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21246,249,506 - 46,249,701 (+)MAPPERmRatBN7.2
mRatBN7.2768,612,943 - 68,613,138 (+)MAPPERmRatBN7.2
Rnor_6.0776,278,848 - 76,279,042NCBIRnor6.0
Rnor_6.01252,307,627 - 52,307,821NCBIRnor6.0
Rnor_5.01254,042,998 - 54,043,192UniSTSRnor5.0
Rnor_5.0776,398,810 - 76,399,004UniSTSRnor5.0
RGSC_v3.4772,960,558 - 72,960,752UniSTSRGSC3.4
RGSC_v3.41246,394,273 - 46,394,467UniSTSRGSC3.4
Celera1247,805,399 - 47,805,593UniSTS
Celera765,678,528 - 65,678,722UniSTS
Cytogenetic Map7q22UniSTS
Cytogenetic Map12q16UniSTS
RH138549  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21246,319,396 - 46,319,520 (+)MAPPERmRatBN7.2
Rnor_6.01252,377,515 - 52,377,638NCBIRnor6.0
Rnor_5.01254,112,889 - 54,113,012UniSTSRnor5.0
RGSC_v3.41246,464,829 - 46,464,952UniSTSRGSC3.4
Celera1247,875,137 - 47,875,260UniSTS
RH 3.4 Map12804.1UniSTS
Cytogenetic Map12q16UniSTS
UniSTS:234349  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21246,249,125 - 46,249,394 (+)MAPPERmRatBN7.2
mRatBN7.23139,961,593 - 139,961,863 (+)MAPPERmRatBN7.2
mRatBN7.2768,612,562 - 68,612,831 (+)MAPPERmRatBN7.2
Rnor_6.03146,963,937 - 146,964,206NCBIRnor6.0
Rnor_6.01252,307,246 - 52,307,514NCBIRnor6.0
Rnor_5.01254,042,617 - 54,042,885UniSTSRnor5.0
Rnor_5.03153,320,795 - 153,321,064UniSTSRnor5.0
Cytogenetic Map12q16UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 161 91 90 59 92 59 6 356 192 11 140 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001431786 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431787 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431788 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001431790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006221397 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249589 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249591 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006249592 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598560 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598561 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598562 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598563 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598564 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598565 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598566 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598567 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604513 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604514 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604515 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604516 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604517 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604518 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604519 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604521 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604522 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604523 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017604524 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271803 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271804 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063271805 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_222254 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC103576 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC120688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH473973 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000012 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000050252   ⟹   ENSRNOP00000049044
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1246,231,543 - 46,320,357 (+)Ensembl
Rnor_6.0 Ensembl1252,356,832 - 52,377,475 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000065893   ⟹   ENSRNOP00000062688
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,960,790 - 51,979,361 (+)Ensembl
mRatBN7.2 Ensembl1246,231,519 - 46,320,357 (+)Ensembl
Rnor_6.0 Ensembl1252,359,310 - 52,377,475 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000071857   ⟹   ENSRNOP00000066472
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1251,960,790 - 51,979,361 (+)Ensembl
mRatBN7.2 Ensembl1246,231,495 - 46,320,357 (+)Ensembl
Rnor_6.0 Ensembl1252,359,310 - 52,377,475 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000096269   ⟹   ENSRNOP00000085646
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1246,231,519 - 46,320,357 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000098513   ⟹   ENSRNOP00000086163
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl1246,231,495 - 46,249,750 (+)Ensembl
RefSeq Acc Id: XM_006249589   ⟹   XP_006249651
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,891,237 - 51,979,715 (+)NCBI
mRatBN7.21246,231,495 - 46,320,607 (+)NCBI
Rnor_6.01252,289,979 - 52,378,726 (+)NCBI
Rnor_5.01254,025,360 - 54,114,099 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249591   ⟹   XP_006249653
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,891,236 - 51,979,715 (+)NCBI
mRatBN7.21246,231,493 - 46,320,607 (+)NCBI
Rnor_6.01252,289,979 - 52,378,726 (+)NCBI
Rnor_5.01254,025,360 - 54,114,099 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006249592   ⟹   XP_006249654
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,891,236 - 51,979,715 (+)NCBI
mRatBN7.21246,231,494 - 46,320,607 (+)NCBI
Rnor_6.01252,289,979 - 52,378,726 (+)NCBI
Rnor_5.01254,025,360 - 54,114,099 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598560   ⟹   XP_017454049
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,891,235 - 51,979,715 (+)NCBI
mRatBN7.21246,231,491 - 46,320,607 (+)NCBI
Rnor_6.01252,289,979 - 52,378,726 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598561   ⟹   XP_017454050
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,891,237 - 51,979,715 (+)NCBI
mRatBN7.21246,231,494 - 46,320,607 (+)NCBI
Rnor_6.01252,289,979 - 52,378,726 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598563   ⟹   XP_017454052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,891,236 - 51,979,715 (+)NCBI
mRatBN7.21246,231,492 - 46,320,607 (+)NCBI
Rnor_6.01252,289,979 - 52,378,726 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017598567   ⟹   XP_017454056
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,891,211 - 51,909,507 (+)NCBI
mRatBN7.21246,231,466 - 46,249,769 (+)NCBI
Rnor_6.01252,289,979 - 52,307,889 (+)NCBI
Sequence:
RefSeq Acc Id: XM_063271803   ⟹   XP_063127873
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,891,237 - 51,979,715 (+)NCBI
RefSeq Acc Id: XM_063271804   ⟹   XP_063127874
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,891,236 - 51,979,715 (+)NCBI
RefSeq Acc Id: XM_063271805   ⟹   XP_063127875
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,891,954 - 51,979,715 (+)NCBI
RefSeq Acc Id: XM_222254   ⟹   XP_222254
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81251,891,236 - 51,979,715 (+)NCBI
mRatBN7.21246,231,493 - 46,320,607 (+)NCBI
Rnor_6.01252,289,979 - 52,378,726 (+)NCBI
Rnor_5.01254,025,360 - 54,114,099 (+)NCBI
RGSC_v3.41246,376,650 - 46,465,402 (+)RGD
Sequence:
RefSeq Acc Id: XP_222254   ⟸   XM_222254
- Peptide Label: isoform X1
- UniProtKB: F1M3A0 (UniProtKB/TrEMBL),   D3Z858 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249653   ⟸   XM_006249591
- Peptide Label: isoform X8
- UniProtKB: A0A8I6A2S4 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249651   ⟸   XM_006249589
- Peptide Label: isoform X4
- UniProtKB: D3Z858 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006249654   ⟸   XM_006249592
- Peptide Label: isoform X9
- UniProtKB: D3Z858 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454052   ⟸   XM_017598563
- Peptide Label: isoform X5
- UniProtKB: D3Z858 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454049   ⟸   XM_017598560
- Peptide Label: isoform X2
- UniProtKB: D3Z858 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454050   ⟸   XM_017598561
- Peptide Label: isoform X3
- UniProtKB: D3Z858 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017454056   ⟸   XM_017598567
- Peptide Label: isoform X11
- Sequence:
Ensembl Acc Id: ENSRNOP00000062688   ⟸   ENSRNOT00000065893
Ensembl Acc Id: ENSRNOP00000066472   ⟸   ENSRNOT00000071857
Ensembl Acc Id: ENSRNOP00000049044   ⟸   ENSRNOT00000050252
Ensembl Acc Id: ENSRNOP00000085646   ⟸   ENSRNOT00000096269
Ensembl Acc Id: ENSRNOP00000086163   ⟸   ENSRNOT00000098513
RefSeq Acc Id: XP_063127874   ⟸   XM_063271804
- Peptide Label: isoform X7
- UniProtKB: D3Z858 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063127873   ⟸   XM_063271803
- Peptide Label: isoform X6
RefSeq Acc Id: XP_063127875   ⟸   XM_063271805
- Peptide Label: isoform X10
- UniProtKB: A6J2A4 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-F1M3A0-F1-model_v2 AlphaFold F1M3A0 1-818 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563342 AgrOrtholog
BioCyc Gene G2FUF-18808 BioCyc
Ensembl Genes ENSRNOG00000030721 Ensembl, UniProtKB/TrEMBL
  ENSRNOG00000083453 ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065893.5 UniProtKB/TrEMBL
  ENSRNOT00000071857.5 UniProtKB/TrEMBL
  ENSRNOT00000098513 ENTREZGENE
  ENSRNOT00000098513.2 UniProtKB/TrEMBL
InterPro AUTS2 UniProtKB/TrEMBL
NCBI Gene 304572 ENTREZGENE
PANTHER FIBROSIN-1-LIKE PROTEIN UniProtKB/TrEMBL
  PTHR14429 UniProtKB/TrEMBL
Pfam Auts2 UniProtKB/TrEMBL
PhenoGen Fbrsl1 PhenoGen
PRINTS FIBROSIN1LPF UniProtKB/TrEMBL
RatGTEx ENSRNOG00000030721 RatGTEx
  ENSRNOG00000083453 RatGTEx
UniProt A0A8I6A2S4 ENTREZGENE
  A0A8I6A5A6 ENTREZGENE, UniProtKB/TrEMBL
  A6J2A4 ENTREZGENE, UniProtKB/TrEMBL
  D3Z858 ENTREZGENE, UniProtKB/TrEMBL
  F1M3A0 ENTREZGENE
  M0RAC7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-06-12 Fbrsl1  fibrosin-like 1  RGD1563342  similar to RIKEN cDNA 2410025L10   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1563342  similar to RIKEN cDNA 2410025L10   RGD1563342_predicted  similar to RIKEN cDNA 2410025L10 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1563342_predicted  similar to RIKEN cDNA 2410025L10 (predicted)  LOC304572  similar to RIKEN cDNA 2410025L10  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC304572  similar to RIKEN cDNA 2410025L10      Symbol and Name status set to provisional 70820 PROVISIONAL