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Gene: Tmem164 (transmembrane protein 164) Rattus norvegicus

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Symbol:

Tmem164

Name:

transmembrane protein 164

RGD ID:

1563286

Description:

Predicted to be involved in positive regulation of ferroptosis. Predicted to be located in membrane. Orthologous to human TMEM164 (transmembrane protein 164); INTERACTS WITH 17alpha-ethynylestradiol; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC367763; RGD1563286; similar to Expressed sequence AW547186

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM164 (transmembrane protein 164)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, Panther
Mus musculus (house mouse):	Tmem164 (transmembrane protein 164)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem164 (transmembrane protein 164)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM164 (transmembrane protein 164)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM164 (transmembrane protein 164)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem164 (transmembrane protein 164)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM164 (transmembrane protein 164)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM164 (transmembrane protein 164)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem164 (transmembrane protein 164)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tmem164 (transmembrane protein 164)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TMEM164 (transmembrane protein 164)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tmem164 (transmembrane protein 164)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	CG14591	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Caenorhabditis elegans (roundworm):	C35C5.10	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	tmem164	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	111,084,830 - 111,245,419 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	111,085,712 - 111,245,417 (+)	Ensembl				GRCr8
mRatBN7.2	X	106,288,019 - 106,448,642 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	106,289,371 - 106,448,640 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	108,421,098 - 108,580,507 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	111,920,256 - 112,079,664 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	109,486,538 - 109,645,928 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	113,947,355 - 114,110,064 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	113,948,654 - 114,110,062 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	112,397,269 - 112,556,696 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	35,712,709 - 35,875,467 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	105,703,068 - 105,862,182 (+)	NCBI		Celera
Cytogenetic Map	X	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Chemical and Drug Induced Liver Injury (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(-)-epigallocatechin 3-gallate (ISO)

17alpha-ethynylestradiol (EXP)

17beta-estradiol (ISO)

17beta-hydroxy-5alpha-androstan-3-one (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

Aflatoxin B2 alpha (ISO)

all-trans-retinoic acid (ISO)

amitrole (EXP)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

carbon nanotube (ISO)

chlorpyrifos (ISO)

coumestrol (ISO)

cyclosporin A (ISO)

dextran sulfate (ISO)

dibutyl phthalate (EXP)

doxorubicin (ISO)

endosulfan (EXP)

Enterolactone (ISO)

ethanol (ISO)

fluoranthene (ISO)

FR900359 (ISO)

gentamycin (EXP)

indole-3-methanol (EXP)

isoprenaline (ISO)

isotretinoin (ISO)

N-nitrosodiethylamine (EXP)

paraquat (EXP)

phenobarbital (EXP)

pirinixic acid (ISO)

potassium chromate (ISO)

pravastatin (EXP,ISO)

progesterone (ISO)

propanal (ISO)

resveratrol (ISO)

sodium arsenite (ISO)

Soman (EXP)

sulfadimethoxine (EXP)

tetrachloromethane (EXP,ISO)

titanium dioxide (ISO)

triphenyl phosphate (ISO)

triptonide (ISO)

tris(2-butoxyethyl) phosphate (ISO)

valproic acid (ISO)

vinclozolin (EXP)

zaragozic acid A (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

positive regulation of ferroptosis (IBA,IEA,ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

Tmem164
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	111,084,830 - 111,245,419 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	111,085,712 - 111,245,417 (+)	Ensembl				GRCr8
mRatBN7.2	X	106,288,019 - 106,448,642 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	106,289,371 - 106,448,640 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	108,421,098 - 108,580,507 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	111,920,256 - 112,079,664 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	109,486,538 - 109,645,928 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	113,947,355 - 114,110,064 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	113,948,654 - 114,110,062 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	112,397,269 - 112,556,696 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	35,712,709 - 35,875,467 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	105,703,068 - 105,862,182 (+)	NCBI		Celera
Cytogenetic Map	X	q33	NCBI

TMEM164
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	110,002,369 - 110,184,251 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	110,002,631 - 110,184,260 (+)	Ensembl			hg38	GRCh38
GRCh37	X	109,245,891 - 109,427,479 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	109,133,018 - 109,303,430 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	X	109,725,502 - 109,900,639 (+)	NCBI		Celera
Cytogenetic Map	X	q23	NCBI
HuRef	X	98,867,226 - 99,041,172 (+)	NCBI		HuRef
CHM1_1	X	109,157,131 - 109,332,259 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	108,450,198 - 108,632,159 (+)	NCBI		T2T-CHM13v2.0

Tmem164
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	141,463,343 - 141,626,490 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	141,464,402 - 141,626,490 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	142,680,347 - 142,843,494 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	142,681,406 - 142,843,494 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	139,115,961 - 139,272,781 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	137,927,786 - 138,084,606 (+)	NCBI		MGSCv36	mm8
Celera	X	126,675,055 - 126,831,458 (+)	NCBI		Celera
Cytogenetic Map	X	F2	NCBI
cM Map	X	63.54	NCBI

Tmem164
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955490	5,673,145 - 5,850,427 (-)	Ensembl
ChiLan1.0	NW_004955490	5,673,204 - 5,850,427 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM164
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	109,494,171 - 109,687,489 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	109,497,787 - 109,682,875 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	99,111,266 - 99,294,224 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	109,581,210 - 109,756,087 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	109,581,210 - 109,756,087 (+)	Ensembl			panPan2	panpan1.1

TMEM164
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	83,219,530 - 83,384,900 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	83,219,505 - 83,381,564 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	69,262,609 - 69,461,090 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	84,835,633 - 85,033,382 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	84,870,511 - 85,033,490 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	82,312,178 - 82,510,872 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	84,006,359 - 84,202,570 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	83,835,339 - 84,035,385 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tmem164
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	82,458,485 - 82,616,962 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936499	5,039,839 - 5,199,433 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936499	5,042,638 - 5,199,433 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM164
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	90,106,036 - 90,289,669 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	90,105,293 - 90,289,674 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	103,807,395 - 103,845,060 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM164
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	97,833,179 - 98,007,700 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	97,833,496 - 98,003,343 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666065	23,036,283 - 23,225,574 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem164
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624803	5,744,703 - 5,914,327 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624803	5,744,576 - 5,914,749 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tmem164
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	94,780,485 - 94,936,724 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tmem164
870 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	1901
Count of miRNA genes:	394
Interacting mature miRNAs:	586
Transcripts:	ENSRNOT00000068431
Prediction methods:	Microtar, Miranda, Pita, Pita,Microtar, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598872	Memor14	Memory QTL 14	4.5		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	X	97528096	142528096	Rat
738025	Stresp3	Stress response QTL 3	4.61	0.0066	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	105359969	157758123	Rat
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	80434318	125434318	Rat
738029	Stresp2	Stress response QTL 2	3.4	0.0004	stress-related behavior trait (VT:0010451)	defensive burying - approach	X	92979612	117740458	Rat
61431	Cia19	Collagen induced arthritis QTL 19	4.4		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	105468858	125434318	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	45182909	117740458	Rat
2302047	Pia34	Pristane induced arthritis QTL 34	5.8	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G1 level (CMO:0002115)	19	96916163	141916163	Rat

Markers in Region

DXGot161

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	106,300,074 - 106,300,283 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	113,959,543 - 113,959,751	NCBI	Rnor6.0
Rnor_5.0	X	112,407,718 - 112,407,926	UniSTS	Rnor5.0
RGSC_v3.4	X	35,864,989 - 35,865,197	UniSTS	RGSC3.4
Celera	X	105,713,768 - 105,713,976	UniSTS
Cytogenetic Map	X	q14	UniSTS

RH129607

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	106,296,855 - 106,297,054 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	113,956,324 - 113,956,522	NCBI	Rnor6.0
Rnor_5.0	X	112,404,499 - 112,404,697	UniSTS	Rnor5.0
RGSC_v3.4	X	35,868,218 - 35,868,416	UniSTS	RGSC3.4
Celera	X	105,710,549 - 105,710,747	UniSTS
RH 3.4 Map	7	1131.62	UniSTS
Cytogenetic Map	X	q14	UniSTS

RH144390

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	106,438,054 - 106,438,319 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	114,099,476 - 114,099,740	NCBI	Rnor6.0
Rnor_5.0	X	112,546,110 - 112,546,374	UniSTS	Rnor5.0
RGSC_v3.4	X	35,723,017 - 35,723,281	UniSTS	RGSC3.4
Celera	X	105,851,597 - 105,851,861	UniSTS
Cytogenetic Map	X	q14	UniSTS

BE113681

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	106,426,400 - 106,426,570 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	114,087,817 - 114,087,986	NCBI	Rnor6.0
Rnor_5.0	X	112,534,451 - 112,534,620	UniSTS	Rnor5.0
RGSC_v3.4	X	35,734,766 - 35,734,935	UniSTS	RGSC3.4
Celera	X	105,839,943 - 105,840,112	UniSTS
Cytogenetic Map	X	q14	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434312	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434313	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434314	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001434315	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773426	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773427	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008773428	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602119	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099938	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099940	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099941	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280173	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280174	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063280175	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079345	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC093400	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH474047	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000068431 ⟹ ENSRNOP00000062249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	111,085,712 - 111,245,417 (+)	Ensembl
mRatBN7.2 Ensembl	X	106,289,371 - 106,448,640 (+)	Ensembl
Rnor_6.0 Ensembl	X	113,948,654 - 114,110,062 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108646 ⟹ ENSRNOP00000084573

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	111,085,712 - 111,245,417 (+)	Ensembl
mRatBN7.2 Ensembl	X	106,289,371 - 106,448,640 (+)	Ensembl

RefSeq Acc Id:

NM_001109014 ⟹ NP_001102484

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	111,086,180 - 111,245,417 (+)	NCBI
mRatBN7.2	X	106,289,371 - 106,448,640 (+)	NCBI
Rnor_6.0	X	113,948,656 - 114,110,062 (+)	NCBI
Rnor_5.0	X	112,397,269 - 112,556,696 (+)	NCBI
RGSC_v3.4	X	35,712,709 - 35,875,467 (-)	RGD
Celera	X	105,703,068 - 105,862,182 (+)	RGD

Sequence:

show sequence

GGAGAGGGGGCCCCGTCGGCGGCGAAGTTGCTAGCTGGGGGCAGAGACGGCCACGCGGTTGCAG
GAATTGGCCAACGGCTCCTTTCAACCCTGCCTCGTTGGTGGCCACTGGAGAAGCGCGGGGGGCT
CCCCAGACAGCCGTGGGGACAAGTTAGAGCCAGCACTTTACCCCGGGCCTCGCGTGTAGCTTTC
CCTCCCCTGTTCTAGGTGCCCCAGTGTCCAGAGGGGGGGTGCGGGTGTGCCCTCCTTACATGTT
CCACCGCCCGGGCAACCCTTCTGTCTCGTGTTCCATCTCGCTCTTGCTTCCTGTACCGTAGTCA
AGTGGAGCCACTTTGCATCATGTCCCGGTATAGCTACCAAAGTCTCCTGGACTGGCTCTATGGG
GGCGTCGACCCCAGTTTTGCAGGCAATGGGGGCCCCGACTGTGCTGCCTTCCTGTCTTGGCAGC
AGCGGCTGCTGGAAAGTGTGGTGGTCCTGACCCTGGCCCTGTTGGAGATCCTGGTGGCCCTGCG
GCACATCCTGAGGCAGAAGGAGGACGGTAGGGGTGGCCGTAGCAGCCAGCCACAGCAGGTGACC
CAGCGGCCAGAGGAAGGCAAGGAGAGCCTGAGCAAGAATCTGCTCTTAGTAGCCCTGTGCCTGA
TCTTCGGGGTGGAGGTGGGCTTTAAGTTCGCCACCAAGACCGTCATCTACCTGCTCAACCCTTG
TCACCTGGTCACCATGATGCATATCTTCCTCCTGGCCTGTCCTCCATGCCCGGGAGCTACCGTC
ATCTTCAAGTTACAGATGCACATGTTGAATGGAGCTCTTCTGGCATTGCTCTTTCCTGTGGTAA
ATACCCGGCTGCTCCCCTTTGAACTAGAGATTTACTACATCCAGCATGTAATGCTCTACGTGGT
CCCCATCTACCTGCTTTGGAAAGGAGGTGCTTACACCCCAGAGCCCCTCAGCAATTTCCACTGG
GCTCTTCTCTCGACTGGCCTCATGTTCTTTTACCACTTCAGCATCCTGCAGATCCTCGGCCTGG
TCACCGAAGTGAATTTGAACAACATGCTGTGTCCGGCCATCTCAGACCCATTCTACGGCCCCTG
GTATCGCATCTGGGCCTCGGGACACCAGACTCTCATGACCATGACCCACGGGAAGCTGGTCATC
CTGTTCTCATACATGGCTGGGCCCTTGTGTAAATATGTGCTGGATTTGCTCCGGCTTCCAGCCA
AGAAAATAGACTGAAGGTGCTTGGATTTTTGTTTTGTTTTAGTTTTGGGTTTTTTTTGTTTTGT
TTTGTTTTGTTTTGTTTTGTTTCGTTTCTCCCTGAGAAAGCAAATCCTGACTTGATTCAGAGAA
TACCCAGCTCTTGACAAAATCATTGGAGAGGGCAAACAGAATACTTGGTTTATTTCCTCCCCCC
CCCCCCTTCTCTGTCCCTTTCTTCCACTACTCTTCCCTCCCCAGCTCCAACCCTTGGATGACTC
TTGGTGCCCAGGGAAGGTGCTGGGGGCTGGAGCTTACTTCTTCTCCTCCCCTGGGTTCTGGGTC
CCTACTGTGCCCCACTCCGTCTGCGTGGCCTTACCCAGGGAAATGGTAGTTAGTGGCCCCTTTC
ATACGGCTTGTTGGTGCTTTTAACAACAGCTGGTTGAGGAAGGAGGGGGCAACAAGCAGTAGTT
CCTCCAGCATCCCAGCCATAAAATAGTGTTGGGTTCATGTCTCTACTGCCAGGGACCTCCAGGC
TCATGCTGGAATCCCCTTTAATCTCCAGCATAGCCCCCACCAGAAGGGGACCAAGGCCTTGCTT
CTACACCAGCCGCAAGCCCAGAGCCAAGGGACTTCCCAGTTCACAGCCAAAATATGATTCTTCC
AGTGACTGGTGTCCCATGACTGAAAGCAGGGAGCTACCCAGCCACTCCTTCTAGGGTGCCGCCT
GGGGTAGATGGCAGCAACGCGCAGCCAAAGGGCAAGATTCTGTACAGGGGTGTGGAAGATCTGT
TGCCACAATGAATCTGAAAGAAAGAGGGTAAAGGTGTACATAGTACCAGGCTGAACCACCCTGT
CCCCCAGGGGGAAAAAAAACAAACAAACCAAACTTTCCCTATGAAAGCTGAGGTCAGATCCCCA
TCCGACATGAGTGTAGAAAGGAAGAAATCAACTAAATCAAGTGGCAACTTGAGAAAGCTGTGAT
CTGAATCACATTCTGTATCACAAGGATAATAGACAGTGTTCTAGTCTCAGCTGCCCCTTGAACC
ATCCTCATTGTCTGTGTATGTGTCTGTCTGTTTTTCTGTCTGAGGCAGCTTCATGGAAGAACAA
GCTGGAGTTGGGGCTTGGGTGCAGTTTGGCTGTTTGTCTTTTGGATGTTTGAAATGGGGGAAAC
CCTCACTTTTCTCTAAGGTACTATCGAGCCATTCCTGGCACTTAGAAGACATGGCCATGGTTCC
TGAAGGCAGTTTTATGAGGATTAGATTTCTTTCGTGTAGCTTGACTCTACTCAAGTGTTCTATG
TGGGGAGACGTCACTGGTTTTGCAGCTTGACAATGTCCAAAACCCACATGTAGGTTGAAAGGGA
ACTGCCTGGGCCCCATAGGTAGAGGTTCAAGTGCTCGGAAGAGAGGAGCTTTGGTTGAAAGGTA
CTTGGTTGTGTGTGAACCACACAAATGGTACCAGTGTCTGTGTATTTGCTGACTCCTCGTCAAC
TTCTAGTAGAAAGAGATTTGATTAGGAATAGAAATGTTTGTACCATGACCACCCCATTGTCTTG
TACCAGATGCAGTATTCAGTGTGAGTTTGTGGGTATTAGGCCTATGCTGACCTTCAGTGGCTTG
GTGGTCATGGTTTTACAAGATGGATTTGCAGGGGAAGCAACTGCAGGAGAGCAAATGGAAACTA
AGAGAAGCCATTCTGGGAGAGGCCGCCTGGCCATGAAGTGATCTAGTCTGAGGTACTGAAAACA
GGCAAGAACTCTTAGTATGCTTGCTACCCTTGATTTCCTGCCATGGCATCTTCACCCTCTGCCA
TCTGTGAGGGCCATGCCAAGCTTCCCTTGCTGTCTCTTCAGGTACTGACTAGCCCTGCTCACTC
ATAGAAGTTGGTGGATGAATAGATTGCAGGAACGCCGCCCTGGCCTGTAAGAGTATGGAGAGGT
CATAGGAGGGGAGTCCATGGGGCCTGACAGAGCTGTTACCACAACATGTTGCTGCTACCTGCAG
TGATGGACGGCCTCAGCTGAGGGGACCAACTCCAGAATGCCACAGAAGTGGGAGTGCCATACAC
ACTTCTTTCCCATCTGAGGCTTCATGGTCCAGGTTGCCAGGCACCTTGGGTCTCCCTATATCAT
CAGTCTGCTTTCGTGCCAGCTCAGCAGACCATTTTCTGGTAGTCATTTCTGGTGCTCAGAGGAA
GAGAGGAAACCCAAAGCCATGTTGCCTGGCATGGCTCATACATAAGGAAGCTAAATGAAACATT
GTCGCTCCTTCAACAGACTCCATAGGGAGACAGCCTGGTTGTGAGAAGTTGGAGAACAGGGAAC
CTCTTCACTATCTATAGATCTCACTCTTACCTTGGTCCAAACCTACATGGAAAGAGGTAACCTG
CCTAGGCTCTTACAACTTTGCCAAGGGAGTTGTCCCTAGGTACGTCCAGCTGGTACCCTCTACT
GTCTGTAGTACAGGGACAGAGAAGACAGTTTGCCCTGACATTGAAGCTTCTCCTTGGGCCTGTC
ATCCCCTTACCACCTTAGCCAAAGTTTTATATGTGCTCGACCATCATGTGTGAGCTCTGTGTCT
GTTCGAGAGAGCTCAGAGAGGTAGCTAGCAAGAAGGAACGGTGTATCTTCAAGCCCTCATTGTC
TGTGGTCAGGGGGCTGCACCAACAAGTACAGTTGGCTAAGCCAGCTTCTCTGATTATAGGTCCT
TCCTGGCCCCAGTGTTTGCTTGTGTATATAAAAGACTTGGCCCAACGTCTTCTCAGAAGCCTAG
CAGCATGTTCTTCTGTTATCCTGTGACAAGCTGTGGGGTTGGGGAGCCACTACCCACCTCTCTA
AGTCTGTCTTCTGTCTTTTTGTAAAATTCTTTGTACCTGTGGGGGTGGTCTATGGGGTCTATGT
GGGCTAAGTAGGGTTGGCTATGCACTTTATTCTATGGTTCCTCAGCCTACCTGTCAGACCATCC
CTTTTGCTGTAGCCTCTGTCAGGGGTTTGCTATGTGTGATCATGGATAATTCAGAGTTTCGTGA
TGTAATTACAAGTTTCTCTCAGATAGTTCAATGTCAGCAGAGCTCTCTATACAGTGGACCCCGG
GGTTGGGGAATGCCCTGAGCTGTGCTGGGCTGGGTGCTCAGGAGTTGGCAAAGGACCCCTTTTA
ACTTTCCTGCTGCCAAAAAGATTTCTTTGGGAATTCTGTCACCTGTCCTTTTTGGGACAAGGGT
TTCTTAATGGTTTCTACTGTAAGGGAGGCGGGGTGGGGGGGAGTAAAGGAGGAATTCAGATGCT
CTTGGACAAGACACTGCTTCTGGTTTTAGTGAGCCAGGACCAAGCCTCAGGAAGTTCCCAAACC
AGACTAGGAAGGAGTGCCCTATCTCCTCCTGGCCCAGCCATCTCTGGGGTAAAAGTCCATTAGA
GGAGTCAGGCTTCCTCTGGTATAGGCAACGAGTTCGCTATGCACAGGAAGACCGAGTTGCTTGC
CGTTGCCCTTGTTTGTGACACTTGTACACTGATTTGCCACTCATGGCACTGAGCAGACACCCAT
CCCTACTCAATGAAAAACGAATCAAAAACAAAAGTCCTTTGAAGCCTAAGATGATGTTTTGGAA
AACTCTTGATTTATTTTGGTGTCAACGTTATGTTAGATTTGAAAGCATTTTTCATTTATTTGAT
GTAATTGTAGCGAAAAGAACAGGATTGAATGGTGTACAGTTATTTCTTCTGGGACATTTCACCG
ATGTCCTGTCCTCCATCCTTCTTCTCAAGCTGAGACTGCCGTGTACTATCACCCTAATGTACAG
GGCTCTTCTGAGAGCCCCTCTGTGAACTCTCTCGATGGCAGCCAAATCGAGCCTCTTTGTCAGG
CTGCTTCTGGGGCGTTCATCCCCAACCCCTCCAGTCTACCTCCCCTCTTCGGGTGTTTTTGTAA
TGTGCTTTCTCTGTTTTGTAAAACCCCTTTGATTGTAATGAAGTGGTTTCTGCAGCCACCTTTT
GGAAATAAATGGCCCTTAATTTGTGTACTTAGCATTTTGAATCTTAGCCTCAGGTGTTTCTGCT
GTTGAAGATTCCTGAATGAAAAGGAACCCTCCCATGGGACTTATTGTTACAATGTTTTCTTCAT
TTACTGTTATTAAAAGATTTATGAG

hide sequence

RefSeq Acc Id:

XM_008773426 ⟹ XP_008771648

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	111,085,722 - 111,245,419 (+)	NCBI
mRatBN7.2	X	106,288,891 - 106,448,642 (+)	NCBI
Rnor_6.0	X	113,948,133 - 114,110,064 (+)	NCBI

Sequence:

show sequence

CGGCCGCCTGGGAGCCCCAGCCGAGTGCCGCCTGGCTGCAGGATGCGGGGAGACAGAGAGTTAG
GTGGAGCCCGGCGGCGGGAGCTGTGCGGCGGATTGGCCAACGGCTCCTTTCAACCCTGCCTCGT
TGGTGGCCACTGGAGAAGCGCGGGGGGCTCCCCAGACAGCCGTGGGGACAAGTTAGAGCCAGCA
CTTTACCCCGGGCCTCGCGTGTAGCTTTCCCTCCCCTGTTCTAGGTGCCCCAGTGTCCAGAGGG
GGGGTGCGGGTGTGCCCTCCTTACATGTTCCACCGCCCGGGCAACCCTTCTGTCTCGTGTTCCA
TCTCGCTCTTGCTTCCTGTACCGTAGTCAAGTGGAGCCACTTTGCATCATGTCCCGGTATAGCT
ACCAAAGTCTCCTGGACTGGCTCTATGGGGGCGTCGACCCCAGTTTTGCAGGCAATGGGGGCCC
CGACTGTGCTGCCTTCCTGTCTTGGCAGCAGCGGCTGCTGGAAAGTGTGGTGGTCCTGACCCTG
GCCCTGTTGGAGATCCTGGTGGCCCTGCGGCACATCCTGAGGCAGAAGGAGGACGGTAGGGGTG
GCCGTAGCAGCCAGCCACAGCAGGTGACCCAGCGGCCAGAGGAAGGCAAGGAGAGCCTGAGCAA
GAATCTGCTCTTAGTAGCCCTGTGCCTGATCTTCGGGGTGGAGGTGGGCTTTAAGTTCGCCACC
AAGACCGTCATCTACCTGCTCAACCCTTGTCACCTGGTCACCATGATGCATATCTTCCTCCTGG
CCTGTCCTCCATGCCCGGGAGCTACCGTCATCTTCAAGTTACAGATGCACATGTTGAATGGAGC
TCTTCTGGCATTGCTCTTTCCTGTGGTAAATACCCGGCTGCTCCCCTTTGAACTAGAGATTTAC
TACATCCAGCATGTAATGCTCTACGTGGTCCCCATCTACCTGCTTTGGAAAGGAGGTGCTTACA
CCCCAGAGCCCCTCAGCAATTTCCACTGGGCTCTTCTCTCGACTGGCCTCATGTTCTTTTACCA
CTTCAGCATCCTGCAGATCCTCGGCCTGGTCACCGAAGTGAATTTGAACAACATGCTGTGTCCG
GCCATCTCAGACCCATTCTACGGCCCCTGGTATCGCATCTGGGCCTCGGGACACCAGACTCTCA
TGACCATGACCCACGGGAAGCTGGTCATCCTGTTCTCATACATGGCTGGGCCCTTGTGTAAATA
TGTGCTGGATTTGCTCCGGCTTCCAGCCAAGAAAATAGACTGAAGGTGCTTGGATTTTTGTTTT
GTTTTAGTTTTGGGTTTTTTTTGTTTTGTTTTGTTTTGTTTTGTTTTGTTTCGTTTCTCCCTGA
GAAAGCAAATCCTGACTTGATTCAGAGAATACCCAGCTCTTGACAAAATCATTGGAGAGGGCAA
ACAGAATACTTGGTTTATTTCCTCCCCCCCCCCCCTTCTCTGTCCCTTTCTTCCACTACTCTTC
CCTCCCCAGCTCCAACCCTTGGATGACTCTTGGTGCCCAGGGAAGGTGCTGGGGGCTGGAGCTT
ACTTCTTCTCCTCCCCTGGGTTCTGGGTCCCTACTGTGCCCCACTCCGTCTGCGTGGCCTTACC
CAGGGAAATGGTAGTTAGTGGCCCCTTTCATACGGCTTGTTGGTGCTTTTAACAACAGCTGGTT
GAGGAAGGAGGGGGCAACAAGCAGTAGTTCCTCCAGCATCCCAGCCATAAAATAGTGTTGGGTT
CATGTCTCTACTGCCAGGGACCTCCAGGCTCATGCTGGAATCCCCTTTAATCTCCAGCATAGCC
CCCACCAGAAGGGGACCAAGGCCTTGCTTCTACACCAGCCGCAAGCCCAGAGCCAAGGGACTTC
CCAGTTCACAGCCAAAATATGATTCTTCCAGTGACTGGTGTCCCATGACTGAAAGCAGGGAGCT
ACCCAGCCACTCCTTCTAGGGTGCCGCCTGGGGTAGATGGCAGCAACGCGCAGCCAAAGGGCAA
GATTCTGTACAGGGGTGTGGAAGATCTGTTGCCACAATGAATCTGAAAGAAAGAGGGTAAAGGT
GTACATAGTACCAGGCTGAACCACCCTGTCCCCCAGGGGGAAAAAAAACAAACAAACCAAACTT
TCCCTATGAAAGCTGAGGTCAGATCCCCATCCGACATGAGTGTAGAAAGGAAGAAATCAACTAA
ATCAAGTGGCAACTTGAGAAAGCTGTGATCTGAATCACATTCTGTATCACAAGGATAATAGACA
GTGTTCTAGTCTCAGCTGCCCCTTGAACCATCCTCATTGTCTGTGTATGTGTCTGTCTGTTTTT
CTGTCTGAGGCAGCTTCATGGAAGAACAAGCTGGAGTTGGGGCTTGGGTGCAGTTTGGCTGTTT
GTCTTTTGGATGTTTGAAATGGGGGAAACCCTCACTTTTCTCTAAGGTACTATCGAGCCATTCC
TGGCACTTAGAAGACATGGCCATGGTTCCTGAAGGCAGTTTTATGAGGATTAGATTTCTTTCGT
GTAGCTTGACTCTACTCAAGTGTTCTATGTGGGGAGACGTCACTGGTTTTGCAGCTTGACAATG
TCCAAAACCCACATGTAGGTTGAAAGGGAACTGCCTGGGCCCCATAGGTAGAGGTTCAAGTGCT
CGGAAGAGAGGAGCTTTGGTTGAAAGGTACTTGGTTGTGTGTGAACCACACAAATGGTACCAGT
GTCTGTGTATTTGCTGACTCCTCGTCAACTTCTAGTAGAAAGAGATTTGATTAGGAATAGAAAT
GTTTGTACCATGACCACCCCATTGTCTTGTACCAGATGCAGTATTCAGTGTGAGTTTGTGGGTA
TTAGGCCTATGCTGACCTTCAGTGGCTTGGTGGTCATGGTTTTACAAGATGGATTTGCAGGGGA
AGCAACTGCAGGAGAGCAAATGGAAACTAAGAGAAGCCATTCTGGGAGAGGCCGCCTGGCCATG
AAGTGATCTAGTCTGAGGTACTGAAAACAGGCAAGAACTCTTAGTATGCTTGCTACCCTTGATT
TCCTGCCATGGCATCTTCACCCTCTGCCATCTGTGAGGGCCATGCCAAGCTTCCCTTGCTGTCT
CTTCAGGTACTGACTAGCCCTGCTCACTCATAGAAGTTGGTGGATGAATAGATTGCAGGAACGC
CGCCCTGGCCTGTAAGAGTATGGAGAGGTCATAGGAGGGGAGTCCATGGGGCCTGACAGAGCTG
TTACCACAACATGTTGCTGCTACCTGCAGTGATGGACGGCCTCAGCTGAGGGGACCAACTCCAG
AATGCCACAGAAGTGGGAGTGCCATACACACTTCTTTCCCATCTGAGGCTTCATGGTCCAGGTT
GCCAGGCACCTTGGGTCTCCCTATATCATCAGTCTGCTTTCGTGCCAGCTCAGCAGACCATTTT
CTGGTAGTCATTTCTGGTGCTCAGAGGAAGAGAGGAAACCCAAAGCCATGTTGCCTGGCATGGC
TCATACATAAGGAAGCTAAATGAAACATTGTCGCTCCTTCAACAGACTCCATAGGGAGACAGCC
TGGTTGTGAGAAGTTGGAGAACAGGGAACCTCTTCACTATCTATAGATCTCACTCTTACCTTGG
TCCAAACCTACATGGAAAGAGGTAACCTGCCTAGGCTCTTACAACTTTGCCAAGGGAGTTGTCC
CTAGGTACGTCCAGCTGGTACCCTCTACTGTCTGTAGTACAGGGACAGAGAAGACAGTTTGCCC
TGACATTGAAGCTTCTCCTTGGGCCTGTCATCCCCTTACCACCTTAGCCAAAGTTTTATATGTG
CTCGACCATCATGTGTGAGCTCTGTGTCTGTTCGAGAGAGCTCAGAGAGGTAGCTAGCAAGAAG
GAACGGTGTATCTTCAAGCCCTCATTGTCTGTGGTCAGGGGGCTGCACCAACAAGTACAGTTGG
CTAAGCCAGCTTCTCTGATTATAGGTCCTTCCTGGCCCCAGTGTTTGCTTGTGTATATAAAAGA
CTTGGCCCAACGTCTTCTCAGAAGCCTAGCAGCATGTTCTTCTGTTATCCTGTGACAAGCTGTG
GGGTTGGGGAGCCACTACCCACCTCTCTAAGTCTGTCTTCTGTCTTTTTGTAAAATTCTTTGTA
CCTGTGGGGGTGGTCTATGGGGTCTATGTGGGCTAAGTAGGGTTGGCTATGCACTTTATTCTAT
GGTTCCTCAGCCTACCTGTCAGACCATCCCTTTTGCTGTAGCCTCTGTCAGGGGTTTGCTATGT
GTGATCATGGATAATTCAGAGTTTCGTGATGTAATTACAAGTTTCTCTCAGATAGTTCAATGTC
AGCAGAGCTCTCTATACAGTGGACCCCGGGGTTGGGGAATGCCCTGAGCTGTGCTGGGCTGGGT
GCTCAGGAGTTGGCAAAGGACCCCTTTTAACTTTCCTGCTGCCAAAAAGATTTCTTTGGGAATT
CTGTCACCTGTCCTTTTTGGGACAAGGGTTTCTTAATGGTTTCTACTGTAAGGGAGGCGGGGTG
GGGGGGAGTAAAGGAGGAATTCAGATGCTCTTGGACAAGACACTGCTTCTGGTTTTAGTGAGCC
AGGACCAAGCCTCAGGAAGTTCCCAAACCAGACTAGGAAGGAGTGCCCTATCTCCTCCTGGCCC
AGCCATCTCTGGGGTAAAAGTCCATTAGAGGAGTCAGGCTTCCTCTGGTATAGGCAACGAGTTC
GCTATGCACAGGAAGACCGAGTTGCTTGCCGTTGCCCTTGTTTGTGACACTTGTACACTGATTT
GCCACTCATGGCACTGAGCAGACACCCATCCCTACTCAATGAAAAACGAATCAAAAACAAAAGT
CCTTTGAAGCCTAAGATGATGTTTTGGAAAACTCTTGATTTATTTTGGTGTCAACGTTATGTTA
GATTTGAAAGCATTTTTCATTTATTTGATGTAATTGTAGCGAAAAGAACAGGATTGAATGGTGT
ACAGTTATTTCTTCTGGGACATTTCACCGATGTCCTGTCCTCCATCCTTCTTCTCAAGCTGAGA
CTGCCGTGTACTATCACCCTAATGTACAGGGCTCTTCTGAGAGCCCCTCTGTGAACTCTCTCGA
TGGCAGCCAAATCGAGCCTCTTTGTCAGGCTGCTTCTGGGGCGTTCATCCCCAACCCCTCCAGT
CTACCTCCCCTCTTCGGGTGTTTTTGTAATGTGCTTTCTCTGTTTTGTAAAACCCCTTTGATTG
TAATGAAGTGGTTTCTGCAGCCACCTTTTGGAAATAAATGGCCCTTAATTTGTGTACTTAGCAT
TTTGAATCTTAGCCTCAGGTGTTTCTGCTGTTGAAGATTCCTGAATGAAAAGGAACCCTCCCAT
GGGACTTATTGTTACAATGTTTTCTTCATTTACTGTTATTAAAAGATTTATGAGAA

hide sequence

RefSeq Acc Id:

XM_008773428 ⟹ XP_008771650

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	111,084,830 - 111,245,419 (+)	NCBI
mRatBN7.2	X	106,288,019 - 106,448,642 (+)	NCBI
Rnor_6.0	X	113,947,355 - 114,110,064 (+)	NCBI

Sequence:

show sequence

TCGGAAGGGGGGCGGGGAGGGAGATCGACGGAAGGAGCCAGCGAGGATTGTGTAGCAGGAGAGA
GAAAAGCATAAGAGCTGAGTTAGATGGTGTCTGAGGAGAAGCCCCCAATTTAGGGGGCTGAAGA
AGAAAGTGAGGCTGGGACAAGAAGGATCTTCCTCCTGGCCTGTCCTCCATGCCCGGGAGCTACC
GTCATCTTCAAGTTACAGATGCACATGTTGAATGGAGCTCTTCTGGCATTGCTCTTTCCTGTGG
TAAATACCCGGCTGCTCCCCTTTGAACTAGAGATTTACTACATCCAGCATGTAATGCTCTACGT
GGTCCCCATCTACCTGCTTTGGAAAGGAGGTGCTTACACCCCAGAGCCCCTCAGCAATTTCCAC
TGGGCTCTTCTCTCGACTGGCCTCATGTTCTTTTACCACTTCAGCATCCTGCAGATCCTCGGCC
TGGTCACCGAAGTGAATTTGAACAACATGCTGTGTCCGGCCATCTCAGACCCATTCTACGGCCC
CTGGTATCGCATCTGGGCCTCGGGACACCAGACTCTCATGACCATGACCCACGGGAAGCTGGTC
ATCCTGTTCTCATACATGGCTGGGCCCTTGTGTAAATATGTGCTGGATTTGCTCCGGCTTCCAG
CCAAGAAAATAGACTGAAGGTGCTTGGATTTTTGTTTTGTTTTAGTTTTGGGTTTTTTTTGTTT
TGTTTTGTTTTGTTTTGTTTTGTTTCGTTTCTCCCTGAGAAAGCAAATCCTGACTTGATTCAGA
GAATACCCAGCTCTTGACAAAATCATTGGAGAGGGCAAACAGAATACTTGGTTTATTTCCTCCC
CCCCCCCCCTTCTCTGTCCCTTTCTTCCACTACTCTTCCCTCCCCAGCTCCAACCCTTGGATGA
CTCTTGGTGCCCAGGGAAGGTGCTGGGGGCTGGAGCTTACTTCTTCTCCTCCCCTGGGTTCTGG
GTCCCTACTGTGCCCCACTCCGTCTGCGTGGCCTTACCCAGGGAAATGGTAGTTAGTGGCCCCT
TTCATACGGCTTGTTGGTGCTTTTAACAACAGCTGGTTGAGGAAGGAGGGGGCAACAAGCAGTA
GTTCCTCCAGCATCCCAGCCATAAAATAGTGTTGGGTTCATGTCTCTACTGCCAGGGACCTCCA
GGCTCATGCTGGAATCCCCTTTAATCTCCAGCATAGCCCCCACCAGAAGGGGACCAAGGCCTTG
CTTCTACACCAGCCGCAAGCCCAGAGCCAAGGGACTTCCCAGTTCACAGCCAAAATATGATTCT
TCCAGTGACTGGTGTCCCATGACTGAAAGCAGGGAGCTACCCAGCCACTCCTTCTAGGGTGCCG
CCTGGGGTAGATGGCAGCAACGCGCAGCCAAAGGGCAAGATTCTGTACAGGGGTGTGGAAGATC
TGTTGCCACAATGAATCTGAAAGAAAGAGGGTAAAGGTGTACATAGTACCAGGCTGAACCACCC
TGTCCCCCAGGGGGAAAAAAAACAAACAAACCAAACTTTCCCTATGAAAGCTGAGGTCAGATCC
CCATCCGACATGAGTGTAGAAAGGAAGAAATCAACTAAATCAAGTGGCAACTTGAGAAAGCTGT
GATCTGAATCACATTCTGTATCACAAGGATAATAGACAGTGTTCTAGTCTCAGCTGCCCCTTGA
ACCATCCTCATTGTCTGTGTATGTGTCTGTCTGTTTTTCTGTCTGAGGCAGCTTCATGGAAGAA
CAAGCTGGAGTTGGGGCTTGGGTGCAGTTTGGCTGTTTGTCTTTTGGATGTTTGAAATGGGGGA
AACCCTCACTTTTCTCTAAGGTACTATCGAGCCATTCCTGGCACTTAGAAGACATGGCCATGGT
TCCTGAAGGCAGTTTTATGAGGATTAGATTTCTTTCGTGTAGCTTGACTCTACTCAAGTGTTCT
ATGTGGGGAGACGTCACTGGTTTTGCAGCTTGACAATGTCCAAAACCCACATGTAGGTTGAAAG
GGAACTGCCTGGGCCCCATAGGTAGAGGTTCAAGTGCTCGGAAGAGAGGAGCTTTGGTTGAAAG
GTACTTGGTTGTGTGTGAACCACACAAATGGTACCAGTGTCTGTGTATTTGCTGACTCCTCGTC
AACTTCTAGTAGAAAGAGATTTGATTAGGAATAGAAATGTTTGTACCATGACCACCCCATTGTC
TTGTACCAGATGCAGTATTCAGTGTGAGTTTGTGGGTATTAGGCCTATGCTGACCTTCAGTGGC
TTGGTGGTCATGGTTTTACAAGATGGATTTGCAGGGGAAGCAACTGCAGGAGAGCAAATGGAAA
CTAAGAGAAGCCATTCTGGGAGAGGCCGCCTGGCCATGAAGTGATCTAGTCTGAGGTACTGAAA
ACAGGCAAGAACTCTTAGTATGCTTGCTACCCTTGATTTCCTGCCATGGCATCTTCACCCTCTG
CCATCTGTGAGGGCCATGCCAAGCTTCCCTTGCTGTCTCTTCAGGTACTGACTAGCCCTGCTCA
CTCATAGAAGTTGGTGGATGAATAGATTGCAGGAACGCCGCCCTGGCCTGTAAGAGTATGGAGA
GGTCATAGGAGGGGAGTCCATGGGGCCTGACAGAGCTGTTACCACAACATGTTGCTGCTACCTG
CAGTGATGGACGGCCTCAGCTGAGGGGACCAACTCCAGAATGCCACAGAAGTGGGAGTGCCATA
CACACTTCTTTCCCATCTGAGGCTTCATGGTCCAGGTTGCCAGGCACCTTGGGTCTCCCTATAT
CATCAGTCTGCTTTCGTGCCAGCTCAGCAGACCATTTTCTGGTAGTCATTTCTGGTGCTCAGAG
GAAGAGAGGAAACCCAAAGCCATGTTGCCTGGCATGGCTCATACATAAGGAAGCTAAATGAAAC
ATTGTCGCTCCTTCAACAGACTCCATAGGGAGACAGCCTGGTTGTGAGAAGTTGGAGAACAGGG
AACCTCTTCACTATCTATAGATCTCACTCTTACCTTGGTCCAAACCTACATGGAAAGAGGTAAC
CTGCCTAGGCTCTTACAACTTTGCCAAGGGAGTTGTCCCTAGGTACGTCCAGCTGGTACCCTCT
ACTGTCTGTAGTACAGGGACAGAGAAGACAGTTTGCCCTGACATTGAAGCTTCTCCTTGGGCCT
GTCATCCCCTTACCACCTTAGCCAAAGTTTTATATGTGCTCGACCATCATGTGTGAGCTCTGTG
TCTGTTCGAGAGAGCTCAGAGAGGTAGCTAGCAAGAAGGAACGGTGTATCTTCAAGCCCTCATT
GTCTGTGGTCAGGGGGCTGCACCAACAAGTACAGTTGGCTAAGCCAGCTTCTCTGATTATAGGT
CCTTCCTGGCCCCAGTGTTTGCTTGTGTATATAAAAGACTTGGCCCAACGTCTTCTCAGAAGCC
TAGCAGCATGTTCTTCTGTTATCCTGTGACAAGCTGTGGGGTTGGGGAGCCACTACCCACCTCT
CTAAGTCTGTCTTCTGTCTTTTTGTAAAATTCTTTGTACCTGTGGGGGTGGTCTATGGGGTCTA
TGTGGGCTAAGTAGGGTTGGCTATGCACTTTATTCTATGGTTCCTCAGCCTACCTGTCAGACCA
TCCCTTTTGCTGTAGCCTCTGTCAGGGGTTTGCTATGTGTGATCATGGATAATTCAGAGTTTCG
TGATGTAATTACAAGTTTCTCTCAGATAGTTCAATGTCAGCAGAGCTCTCTATACAGTGGACCC
CGGGGTTGGGGAATGCCCTGAGCTGTGCTGGGCTGGGTGCTCAGGAGTTGGCAAAGGACCCCTT
TTAACTTTCCTGCTGCCAAAAAGATTTCTTTGGGAATTCTGTCACCTGTCCTTTTTGGGACAAG
GGTTTCTTAATGGTTTCTACTGTAAGGGAGGCGGGGTGGGGGGGAGTAAAGGAGGAATTCAGAT
GCTCTTGGACAAGACACTGCTTCTGGTTTTAGTGAGCCAGGACCAAGCCTCAGGAAGTTCCCAA
ACCAGACTAGGAAGGAGTGCCCTATCTCCTCCTGGCCCAGCCATCTCTGGGGTAAAAGTCCATT
AGAGGAGTCAGGCTTCCTCTGGTATAGGCAACGAGTTCGCTATGCACAGGAAGACCGAGTTGCT
TGCCGTTGCCCTTGTTTGTGACACTTGTACACTGATTTGCCACTCATGGCACTGAGCAGACACC
CATCCCTACTCAATGAAAAACGAATCAAAAACAAAAGTCCTTTGAAGCCTAAGATGATGTTTTG
GAAAACTCTTGATTTATTTTGGTGTCAACGTTATGTTAGATTTGAAAGCATTTTTCATTTATTT
GATGTAATTGTAGCGAAAAGAACAGGATTGAATGGTGTACAGTTATTTCTTCTGGGACATTTCA
CCGATGTCCTGTCCTCCATCCTTCTTCTCAAGCTGAGACTGCCGTGTACTATCACCCTAATGTA
CAGGGCTCTTCTGAGAGCCCCTCTGTGAACTCTCTCGATGGCAGCCAAATCGAGCCTCTTTGTC
AGGCTGCTTCTGGGGCGTTCATCCCCAACCCCTCCAGTCTACCTCCCCTCTTCGGGTGTTTTTG
TAATGTGCTTTCTCTGTTTTGTAAAACCCCTTTGATTGTAATGAAGTGGTTTCTGCAGCCACCT
TTTGGAAATAAATGGCCCTTAATTTGTGTACTTAGCATTTTGAATCTTAGCCTCAGGTGTTTCT
GCTGTTGAAGATTCCTGAATGAAAAGGAACCCTCCCATGGGACTTATTGTTACAATGTTTTCTT
CATTTACTGTTATTAAAAGATTTATGAGAA

hide sequence

RefSeq Acc Id:

XM_039099938 ⟹ XP_038955866

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	111,085,731 - 111,245,419 (+)	NCBI
mRatBN7.2	X	106,343,034 - 106,448,642 (+)	NCBI

RefSeq Acc Id:

XM_039099940 ⟹ XP_038955868

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	111,085,667 - 111,245,419 (+)	NCBI
mRatBN7.2	X	106,288,857 - 106,448,642 (+)	NCBI

RefSeq Acc Id:

XM_039099941 ⟹ XP_038955869

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	111,085,718 - 111,245,419 (+)	NCBI
mRatBN7.2	X	106,288,855 - 106,448,642 (+)	NCBI

RefSeq Acc Id:

XM_063280173 ⟹ XP_063136243

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	111,085,889 - 111,245,419 (+)	NCBI

RefSeq Acc Id:

XM_063280174 ⟹ XP_063136244

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	111,085,874 - 111,135,622 (+)	NCBI

RefSeq Acc Id:

XM_063280175 ⟹ XP_063136245

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	111,085,899 - 111,245,419 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102484	(Get FASTA)	NCBI Sequence Viewer
	NP_001421240	(Get FASTA)	NCBI Sequence Viewer
	NP_001421241	(Get FASTA)	NCBI Sequence Viewer
	NP_001421242	(Get FASTA)	NCBI Sequence Viewer
	NP_001421243	(Get FASTA)	NCBI Sequence Viewer
	NP_001421244	(Get FASTA)	NCBI Sequence Viewer
	XP_008771648	(Get FASTA)	NCBI Sequence Viewer
	XP_008771650	(Get FASTA)	NCBI Sequence Viewer
	XP_038955866	(Get FASTA)	NCBI Sequence Viewer
	XP_038955868	(Get FASTA)	NCBI Sequence Viewer
	XP_038955869	(Get FASTA)	NCBI Sequence Viewer
	XP_063136243	(Get FASTA)	NCBI Sequence Viewer
	XP_063136244	(Get FASTA)	NCBI Sequence Viewer
	XP_063136245	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL85202	(Get FASTA)	NCBI Sequence Viewer
	EDL85203	(Get FASTA)	NCBI Sequence Viewer
	EDL85204	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000062249
	ENSRNOP00000062249.1
	ENSRNOP00000084573.1

RefSeq Acc Id:

NP_001102484 ⟸ NM_001109014

- UniProtKB:

D3ZFX1 (UniProtKB/TrEMBL), A6KG75 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MSRYSYQSLLDWLYGGVDPSFAGNGGPDCAAFLSWQQRLLESVVVLTLALLEILVALRHILRQK
EDGRGGRSSQPQQVTQRPEEGKESLSKNLLLVALCLIFGVEVGFKFATKTVIYLLNPCHLVTMM
HIFLLACPPCPGATVIFKLQMHMLNGALLALLFPVVNTRLLPFELEIYYIQHVMLYVVPIYLLW
KGGAYTPEPLSNFHWALLSTGLMFFYHFSILQILGLVTEVNLNNMLCPAISDPFYGPWYRIWAS
GHQTLMTMTHGKLVILFSYMAGPLCKYVLDLLRLPAKKID

hide sequence

RefSeq Acc Id:	XP_008771650 ⟸ XM_008773428
- Peptide Label:	isoform X5
- Sequence:	show sequence MHMLNGALLALLFPVVNTRLLPFELEIYYIQHVMLYVVPIYLLWKGGAYTPEPLSNFHWALLST GLMFFYHFSILQILGLVTEVNLNNMLCPAISDPFYGPWYRIWASGHQTLMTMTHGKLVILFSYM AGPLCKYVLDLLRLPAKKID hide sequence

RefSeq Acc Id:

XP_008771648 ⟸ XM_008773426

- Peptide Label:

isoform X1

- Sequence:

show sequence

MSRYSYQSLLDWLYGGVDPSFAGNGGPDCAAFLSWQQRLLESVVVLTLALLEILVALRHILRQK
EDGRGGRSSQPQQVTQRPEEGKESLSKNLLLVALCLIFGVEVGFKFATKTVIYLLNPCHLVTMM
HIFLLACPPCPGATVIFKLQMHMLNGALLALLFPVVNTRLLPFELEIYYIQHVMLYVVPIYLLW
KGGAYTPEPLSNFHWALLSTGLMFFYHFSILQILGLVTEVNLNNMLCPAISDPFYGPWYRIWAS
GHQTLMTMTHGKLVILFSYMAGPLCKYVLDLLRLPAKKID

hide sequence

Ensembl Acc Id:

ENSRNOP00000062249 ⟸ ENSRNOT00000068431

RefSeq Acc Id:	XP_038955869 ⟸ XM_039099941
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038955868 ⟸ XM_039099940
- Peptide Label:	isoform X5

RefSeq Acc Id:	XP_038955866 ⟸ XM_039099938
- Peptide Label:	isoform X4

Ensembl Acc Id:

ENSRNOP00000084573 ⟸ ENSRNOT00000108646

RefSeq Acc Id:	XP_063136244 ⟸ XM_063280174
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063136243 ⟸ XM_063280173
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063136245 ⟸ XM_063280175
- Peptide Label:	isoform X5

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZFX1-F1-model_v2	AlphaFold	D3ZFX1	1-296	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701964

Promoter ID:

EPDNEW_R12488

Type:

single initiation site

Name:

Tmem164_1

Description:

transmembrane protein 164

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	113,948,673 - 113,948,733	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563286	AgrOrtholog
BioCyc Gene	G2FUF-1511	BioCyc
Ensembl Genes	ENSRNOG00000012787	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000068431	ENTREZGENE
	ENSRNOT00000068431.4	UniProtKB/TrEMBL
	ENSRNOT00000108646.2	UniProtKB/TrEMBL
InterPro	TMEM164	UniProtKB/TrEMBL
KEGG Report	rno:367763	UniProtKB/TrEMBL
NCBI Gene	367763	ENTREZGENE
PANTHER	PTHR20948	UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 164	UniProtKB/TrEMBL
Pfam	TMEM164	UniProtKB/TrEMBL
PhenoGen	Tmem164	PhenoGen
RatGTEx	ENSRNOG00000012787	RatGTEx
UniProt	A0A8I6A1M0_RAT	UniProtKB/TrEMBL
	A6KG75	ENTREZGENE, UniProtKB/TrEMBL
	A6KG77	ENTREZGENE, UniProtKB/TrEMBL
	D3ZFX1	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-06	Tmem164	transmembrane protein 164	RGD1563286_predicted	similar to Expressed sequence AW547186 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1563286_predicted	similar to Expressed sequence AW547186 (predicted)	LOC367763	similar to Expressed sequence AW547186	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC367763	similar to Expressed sequence AW547186			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD