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Gene: Tspyl2 (TSPY-like 2) Rattus norvegicus

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Symbol:

Tspyl2

Name:

TSPY-like 2

RGD ID:

1563283

Description:

Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of DNA replication and negative regulation of cell growth. Predicted to be located in nucleolus. Predicted to be active in chromatin and nucleus. Orthologous to human TSPYL2 (TSPY like 2); INTERACTS WITH 17beta-estradiol; acrylamide; bisphenol A.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC302612; RGD1563283; similar to DNA segment, Chr X, Brigham & Womens Genetics 1396 expressed, isoform a; testis-specific Y-encoded-like protein 2

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TSPYL2 (TSPY like 2)	HGNC	Ensembl, HomoloGene, Inparanoid, NCBI, Panther
Mus musculus (house mouse):	Tspyl2 (TSPY-like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tspyl2 (TSPY like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TSPYL2 (TSPY like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TSPYL2 (TSPY like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tspyl2 (TSPY like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TSPYL2 (TSPY like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TSPYL2 (TSPY like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tspyl2 (TSPY like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tspyl2 (TSPY like 2)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	TSPYL2 (TSPY like 2)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tspyl2 (TSPY-like 2)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tspy (testis specific protein Y-linked)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|OrthoInspector\|PANTHER)
Danio rerio (zebrafish):	tspy (testis specific protein Y-linked)	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Set	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Saccharomyces cerevisiae (baker's yeast):	VPS75	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Saccharomyces cerevisiae (baker's yeast):	VPS75	Alliance	DIOPT (Ensembl Compara\|PhylomeDB)
Caenorhabditis elegans (roundworm):	spr-2	Alliance	DIOPT (OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	tspyl2	Alliance	DIOPT (Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	tspyl2	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	24,918,851 - 24,924,462 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	24,918,851 - 24,924,462 (-)	Ensembl				GRCr8
mRatBN7.2	X	21,439,478 - 21,445,208 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	21,439,478 - 21,445,089 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	18,904,903 - 18,910,514 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	21,213,054 - 21,218,665 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	22,005,092 - 22,010,703 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	22,408,118 - 22,413,886 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	22,408,118 - 22,413,741 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	64,167,893 - 64,173,685 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	41,836,670 - 41,842,281 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	21,701,208 - 21,706,819 (-)	NCBI		Celera
Cytogenetic Map	X	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Endometrial Neoplasms (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

17alpha-ethynylestradiol (ISO)

17beta-estradiol (EXP,ISO)

2,2',4,4'-Tetrabromodiphenyl ether (ISO)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4-hydroxynon-2-enal (ISO)

acrylamide (EXP,ISO)

amiodarone (ISO)

aristolochic acid A (ISO)

Aroclor 1254 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenous acid (ISO)

benzo[a]pyrene (ISO)

benzo[a]pyrene diol epoxide I (ISO)

bis(2-ethylhexyl) phthalate (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

cadmium dichloride (ISO)

carbon nanotube (ISO)

cisplatin (ISO)

cobalt dichloride (ISO)

copper atom (ISO)

copper(0) (ISO)

copper(II) sulfate (ISO)

crocidolite asbestos (ISO)

cyclosporin A (ISO)

DDE (ISO)

dexamethasone (ISO)

diarsenic trioxide (ISO)

Dibutyl phosphate (ISO)

dichloroacetic acid (ISO)

disulfiram (ISO)

doxorubicin (ISO)

ethanol (ISO)

folic acid (ISO)

formaldehyde (ISO)

indometacin (ISO)

menadione (ISO)

methylisothiazolinone (ISO)

nickel atom (ISO)

okadaic acid (ISO)

ozone (ISO)

pregnenolone 16alpha-carbonitrile (ISO)

propanal (ISO)

quercetin (ISO)

resveratrol (ISO)

silicon dioxide (ISO)

sodium arsenite (ISO)

Soman (EXP)

tamoxifen (ISO)

thiram (ISO)

titanium dioxide (ISO)

trichostatin A (ISO)

triptonide (ISO)

trovafloxacin (ISO)

urethane (ISO)

zinc atom (ISO)

zinc(0) (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

chromatin organization (IEA)

DNA-templated transcription (IEA)

negative regulation of cell growth (IEA,ISO)

negative regulation of DNA replication (IEA,ISO)

nucleosome assembly (IEA)

regulation of protein kinase activity (ISO)

Cellular Component

chromatin (IBA)

cytoplasm (IEA)

nucleolus (IEA,ISO)

nucleus (IBA,IEA,ISO)

Molecular Function

chromatin binding (IBA)

histone binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11395479	PMID:38782571

Genomics

Comparative Map Data

Tspyl2
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	24,918,851 - 24,924,462 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	24,918,851 - 24,924,462 (-)	Ensembl				GRCr8
mRatBN7.2	X	21,439,478 - 21,445,208 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	21,439,478 - 21,445,089 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	18,904,903 - 18,910,514 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	21,213,054 - 21,218,665 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	22,005,092 - 22,010,703 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	22,408,118 - 22,413,886 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	X	22,408,118 - 22,413,741 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	X	64,167,893 - 64,173,685 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	41,836,670 - 41,842,281 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	21,701,208 - 21,706,819 (-)	NCBI		Celera
Cytogenetic Map	X	q13	NCBI

TSPYL2
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	53,082,367 - 53,088,540 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	53,082,326 - 53,088,541 (+)	Ensembl			hg38	GRCh38
GRCh37	X	53,111,549 - 53,117,722 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	53,128,290 - 53,134,447 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	52,994,582 - 53,000,742	NCBI
Celera	X	56,941,043 - 56,947,032 (+)	NCBI		Celera
Cytogenetic Map	X	p11.22	NCBI
HuRef	X	50,176,603 - 50,182,876 (+)	NCBI		HuRef
CHM1_1	X	53,101,666 - 53,107,852 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	52,368,603 - 52,374,776 (+)	NCBI		T2T-CHM13v2.0

Tspyl2
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	151,119,847 - 151,125,480 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	151,119,848 - 151,125,421 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	152,336,851 - 152,342,484 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	152,336,852 - 152,342,425 (-)	Ensembl			mm10	GRCm38
MGSCv37	X	148,771,395 - 148,777,027 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	147,677,568 - 147,683,200 (-)	NCBI		MGSCv36	mm8
MGSCv36	X	129,345,337 - 129,350,969 (-)	NCBI		MGSCv36	mm8
Cytogenetic Map	X	F3	NCBI
cM Map	X	68.46	NCBI

Tspyl2
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955475	160,964 - 167,440 (+)	Ensembl
ChiLan1.0	NW_004955475	160,768 - 167,359 (+)	NCBI	ChiLan1.0	ChiLan1.0

TSPYL2
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	54,478,286 - 54,484,894 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	54,481,891 - 54,488,499 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	45,293,843 - 45,300,307 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	53,404,276 - 53,409,876 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	53,400,290 - 53,409,275 (+)	Ensembl			panPan2	panpan1.1

TSPYL2
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	45,001,112 - 45,008,023 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	X	45,001,100 - 45,007,869 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	36,422,522 - 36,429,433 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	45,213,793 - 45,220,698 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	X	45,213,751 - 45,220,698 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	X	44,709,021 - 44,715,932 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	45,158,674 - 45,165,585 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	45,225,994 - 45,232,905 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tspyl2
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	37,745,381 - 37,751,870 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936751	85,248 - 91,000 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936751	85,104 - 91,596 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TSPYL2
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	X	45,909,719 - 45,916,857 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	X	45,909,688 - 45,916,859 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	51,409,662 - 51,416,824 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TSPYL2
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	49,218,055 - 49,225,619 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	X	49,219,525 - 49,225,401 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666086	3,170,087 - 3,177,558 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tspyl2
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624909	323,040 - 329,410 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624909	322,681 - 329,299 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tspyl2
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	X	13,483,119 - 13,488,978 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tspyl2
4 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	477
Count of miRNA genes:	248
Interacting mature miRNAs:	294
Transcripts:	ENSRNOT00000004504
Prediction methods:	Microtar, Miranda, Pita, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1598873	Memor2	Memory QTL 2	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	X	24470360	44931007	Rat
70165	Bp64	Blood pressure QTL 64	5.2		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	X	4001493	44939387	Rat
2290375	Gluco34	Glucose level QTL 34	2.75		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	X	24470360	45082063	Rat
731181	Uae27	Urinary albumin excretion QTL 27	2.7	0.0059	urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	X	1970440	46970440	Rat
631666	Iddm5	Insulin dependent diabetes mellitus QTL 5			blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	X	8111486	53111486	Rat

Markers in Region

RH138248

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	21,440,654 - 21,440,858 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	22,409,294 - 22,409,497	NCBI	Rnor6.0
Rnor_5.0	X	64,172,306 - 64,172,509	UniSTS	Rnor5.0
RGSC_v3.4	X	41,837,847 - 41,838,050	UniSTS	RGSC3.4
Celera	X	21,702,385 - 21,702,588	UniSTS
RH 3.4 Map	X	211.63	UniSTS
Cytogenetic Map	X	q21	UniSTS

UniSTS:471851

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	21,441,571 - 21,442,671 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	22,410,211 - 22,411,310	NCBI	Rnor6.0
Rnor_5.0	X	64,170,492 - 64,171,592	NCBI	Rnor5.0
RGSC_v3.4	X	41,838,764 - 41,839,863	UniSTS	RGSC3.4
Celera	X	21,703,302 - 21,704,401	UniSTS
Cytogenetic Map	X	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	165	91	90	59	92	59	6	356	192	11	144	81	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001191618	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH474063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000084129 ⟹ ENSRNOP00000069624

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	22,408,118 - 22,413,714 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000085905 ⟹ ENSRNOP00000075439

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	24,918,851 - 24,924,462 (-)	Ensembl
mRatBN7.2 Ensembl	X	21,439,478 - 21,445,089 (-)	Ensembl
Rnor_6.0 Ensembl	X	22,408,128 - 22,413,741 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000087671

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	X	22,410,518 - 22,413,530 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000173449 ⟹ ENSRNOP00000106943

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	24,919,777 - 24,924,462 (-)	Ensembl

RefSeq Acc Id:

NM_001191618 ⟹ NP_001178547

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	24,918,851 - 24,924,462 (-)	NCBI
mRatBN7.2	X	21,439,478 - 21,445,089 (-)	NCBI
Rnor_6.0	X	22,408,118 - 22,413,728 (-)	NCBI
Rnor_5.0	X	64,167,893 - 64,173,685 (+)	NCBI
Celera	X	21,701,208 - 21,706,819 (-)	NCBI

Sequence:

show sequence

CGAGGTGGTGAGCTGAGCTGGTCGCGTGAGGTGTGGCGGCTCCGCTTCAAGTGTGACTGGTGCC
TGAGGCCTTGTCTGAGAGCCGAAAAGCCAGTGCTTTGAGCGCGGTCACCATGGACCGCCCGGAT
GAGGGGCCTCCGGCCAAGACCCCCCGCCTGAGCAGCTCGGAATCCCGTCAGCGCGACCTGCCGC
CCCCGCCACCCCCACCACTCCTGCGACTGCCCCTGCCTCCACCCCAGCAGCGTCCGAGACCCCA
GGAAGAGACCGAGGCTGCACAGGTGCTGGCTGACATGAGGGGGGTGGGCCCCACGCTGCCCCCA
CCACTGCCCTATGTCATTCTCGAGGAGGGGGGTATCCGTGCGTATTTCACTCTGGGTGCTGAGA
GTCCGGGCTGGGATCCTGCGATTGAGTCAGGGTTCGGGGAGGTCCCGTCCACAGAGATCATAGA
AACACTCCCGTCTTCAGAAGCCTCTAGGGGAAGCCTGGAAATTGACTTTCAGGTTGCAGAACAC
AGCAGCCTTGGAGAGAAGGCCCTAGAAACCTGTAGCTTTGGAGGGTGGGGGCCCCAGATGTTAG
TCGGTCCAAAGAGGAAGGAGGAGGCTATCATCATAGTGGAAGATGAGGATGAGGATGAAAAGGA
AAGTATGAGGAGGCTGCAGCAGCGTCGGCGGAGGAGGAGAAGGAGGAGGAGGAGGAAGCAGAGG
AAGGCGAAGGAGAGCAGAGAGAGGAGTGCGCAGAGGATGGAAAGCATACTGCAGGCCCTGGAGA
GCATTCAAATGGACCTGGAGGCGGTGAACATCAAGGCAGGCAAGGCCTTCTTGCGTCTCAAACG
CAAGTTCATCCAGATGCGAAGACCCTTTTTGGAGCGCAGAGACCTCATCATCCAGCATATCCCA
GGCTTCTGGGTCAAAGCATTCCTCAACCACCCCAGAATTTCAATCTTGATCAACCAACGCGATG
AAGACATCTTCCGCTACTTGACCAATCTTCAGGTACAGGATCTCAGACATATCTCCATGGGCTA
CAAAATGAAGCTGTACTTCCAGACAAACCCATACTTCACAAACATGGTGATCGTCAAGGAGTTC
CAGCGCAACCGCTCAGGTCGGTTGGTGTCTCATTCTACCCCAATACGTTGGCATCGGGGACAGG
AACCCCAGGTCTACAATCGCAGGAGCCACGACACCAGAGAAAGCTTCTTCAACTGGTTTTCCAA
CCACAGCCTCCCAGAAGCTGACAGAATTGCTGAGATTATCAAGAATGACCTGTGGGTTAACCCA
GTACGCTACTACATGAGAGGAGGTGGCTACAGAACAAGCAGAAAGAAGCAACTAGGAAAGGAAA
GAGCCAAGAATCAATATGAAATGGTGATCATGGAAGATGCTCATGACCATTATGCCGTTGAAGA
CATTCTCAGTGAAATCTCAGAAATTGATGAGATCACTGACAATGAGACCATTCACGACATCAAG
ATCTCTGACTTCATGGAGACCACTGACTACTTTGAGACCACTGATAATGAGGTAACTGATGCCA
ATGAGAACCTGTGCGACAGTGAGAATCCTGACCACAGTGAGGGCTCCCACAAGATCACTGACAA
CAAAGGGAGCATTGCCACCGGTCCAGATGACAACGGTGACAAGCCAGAGGAAAAGAATACCTAT
GACAGTGAGGATTCCAACAGTGAGAAAGCTGATGGGGACAACAAAACCCTAGAAGGTGACAACC
AGCAGGTTACTAATATCCAAGATAGCAGTGATAGTGACAATGGAGATGAGGGTAGTGATGATGA
AGATGATGATGGCAATGAGGGTGACAATGAGGGCAGTGATGATGATGACAGGGACATTAAATAC
TATAAGAATGGCTTCGAAGTCTTTGACAAGGCTCTGGATAACCGCACCATCCAAGATGTCTATG
AGGAGGAGGTAGAAATCATCTCTGAAGACTCAGTTGAGGAAGAAGAGGAAGAGACCAGTGAGGA
AGCTAGTGAGCTAAGCGAGGACAGCTATGAAGACGAACGAGTCTATGAGGAGGAAGGAAGTGAA
GTGAACTCAGAAGATTCTGATATCCAGGAAGTGCTGCCAGTCCCAAATGCTTGGGCCAGCCTGG
GGAAGAAAGGGAAAATCGGATAAACATCTTGCCCTTTAGGGCCTCTCTATATATTACCCCATAC
CCTATCCCATTTGCCCTCCTCTTCAGCTAGGGCTGTGTGGCCCCATATTGCACTTCTGGGGGGA
GACCGATTGATTACACGGGTTTAAAGTTTATTTTTATGGTTTAGTAACTGCAGAGTTACTTATT
TGGAGGAGGGATCACCCTCCCCTTTGGCCCTCCTCCACTGCAGGCTTTTGTGTGCTGCTAATCT
TATTTATTGTGATGCCTTGGTCAGGGCCCCTCTAGCCCCCTTCTCGTGAGCTTAGGCCCAAGCC
CCTCTCTCTGTGCTGCGTGGACATCCTATCACTAAGCGTGAAGGGCCTATGTGACCTTCGTGAC
AACTGCACTGTGGCCTCGAGACTCTGCTACTACCCCTTCCTTTCTCCAGAGTTTCTCTCCAATC
CCTTTATTCCCTTCACCAGCCCTGACCACTAGCCCGCCTCAGTGTCTTTGCCAGGCAGCTTCGC
CTTTGTGGTATTCCTGCTCCCCAAAGCCCCGCCCCTTTCCCCGTGACCCTTGACGAGTCTAATA
AAACTGAGCAAATTCAAAGTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001178547	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL86298	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000075439
	ENSRNOP00000075439.1
	ENSRNOP00000106943.1

RefSeq Acc Id:

NP_001178547 ⟸ NM_001191618

- UniProtKB:

A0A096MJ32 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MDRPDEGPPAKTPRLSSSESRQRDLPPPPPPPLLRLPLPPPQQRPRPQEETEAAQVLADMRGVG
PTLPPPLPYVILEEGGIRAYFTLGAESPGWDPAIESGFGEVPSTEIIETLPSSEASRGSLEIDF
QVAEHSSLGEKALETCSFGGWGPQMLVGPKRKEEAIIIVEDEDEDEKESMRRLQQRRRRRRRRR
RRKQRKAKESRERSAQRMESILQALESIQMDLEAVNIKAGKAFLRLKRKFIQMRRPFLERRDLI
IQHIPGFWVKAFLNHPRISILINQRDEDIFRYLTNLQVQDLRHISMGYKMKLYFQTNPYFTNMV
IVKEFQRNRSGRLVSHSTPIRWHRGQEPQVYNRRSHDTRESFFNWFSNHSLPEADRIAEIIKND
LWVNPVRYYMRGGGYRTSRKKQLGKERAKNQYEMVIMEDAHDHYAVEDILSEISEIDEITDNET
IHDIKISDFMETTDYFETTDNEVTDANENLCDSENPDHSEGSHKITDNKGSIATGPDDNGDKPE
EKNTYDSEDSNSEKADGDNKTLEGDNQQVTNIQDSSDSDNGDEGSDDEDDDGNEGDNEGSDDDD
RDIKYYKNGFEVFDKALDNRTIQDVYEEEVEIISEDSVEEEEEETSEEASELSEDSYEDERVYE
EEGSEVNSEDSDIQEVLPVPNAWASLGKKGKIG

hide sequence

Ensembl Acc Id:

ENSRNOP00000075439 ⟸ ENSRNOT00000085905

Ensembl Acc Id:

ENSRNOP00000069624 ⟸ ENSRNOT00000084129

Ensembl Acc Id:

ENSRNOP00000106943 ⟸ ENSRNOT00000173449

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-A0A096MJ32-F1-model_v2	AlphaFold	A0A096MJ32	1-674	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13701773

Promoter ID:

EPDNEW_R12297

Type:

single initiation site

Name:

Tspyl2_1

Description:

TSPY-like 2

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	X	22,413,732 - 22,413,792	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563283	AgrOrtholog
BioCyc Gene	G2FUF-2713	BioCyc
Ensembl Genes	ENSRNOG00000061782	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000085905	ENTREZGENE
	ENSRNOT00000085905.3	UniProtKB/TrEMBL
	ENSRNOT00000173449.1	UniProtKB/TrEMBL
Gene3D-CATH	1.20.5.1500	UniProtKB/TrEMBL
	Nucleosome assembly protein	UniProtKB/TrEMBL
InterPro	NAP-like_sf	UniProtKB/TrEMBL
	NAP_family	UniProtKB/TrEMBL
NCBI Gene	302612	ENTREZGENE
PANTHER	NAP_family	UniProtKB/TrEMBL
Pfam	NAP	UniProtKB/TrEMBL
PhenoGen	Tspyl2	PhenoGen
RatGTEx	ENSRNOG00000061782	RatGTEx
Superfamily-SCOP	SSF143113	UniProtKB/TrEMBL
UniProt	A0A096MJ32	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LQM4_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	Tspyl2	TSPY-like 2	Tspyl2_predicted	TSPY-like 2 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Tspyl2_predicted	TSPY-like 2 (predicted)	RGD1563283_predicted	similar to DNA segment, Chr X, Brigham & Womens Genetics 1396 expressed, isoform a (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1563283_predicted	similar to DNA segment, Chr X, Brigham & Womens Genetics 1396 expressed, isoform a (predicted)	LOC302612	similar to DNA segment, Chr X, Brigham & Womens Genetics 1396 expressed, isoform a	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC302612	similar to DNA segment, Chr X, Brigham & Womens Genetics 1396 expressed, isoform a			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - CTD