Gtse1 (G-2 and S-phase expressed 1) - Rat Genome Database

Send us a Message
Submit Data |  Help |  Video Tutorials |  News |  Publications |  Download |  REST API |  Citing RGD |  Contact   
Search RGD Grant Resources Citing RGD About Us Contact Us
Genes Variants Community Projects QTLs Strains Markers Genome Information Ontologies Cell Lines References Download Submit Data
OntoMate (Literature Search) JBrowse (Genome Browser) Synteny Browser (VCMap) Variant Visualizer Multi-Ontology Enrichment (MOET) Gene-Ortholog Location Finder (GOLF) InterViewer (Protein-Protein Interactions) PhenoMiner (Quatitative Phenotypes) Gene Annotator OLGA (Gene List Generator) AllianceMine GViewer (Genome Viewer)
Aging & Age-Related Disease Behavioral & Substance Use Disorder Cancer & Neoplastic Disease Cardiovascular Disease Coronavirus Disease Developmental Disease Diabetes Hematologic Disease Immune & Inflammatory Disease Infectious Disease Liver Disease Neurological Disease Obesity & Metabolic Syndrome Renal Disease Respiratory Disease Sensory Organ Disease
Find Models Genetic Models Autism Models Rat PhenoMiner (Quantitative Phenotypes) Chinchilla PhenoMiner Expected Ranges (Quantitative Phenotype) PhenoMiner Term Comparison Hybrid Rat Diversity Panel Phenotypes Phenotypes in Other Animal Models Animal Husbandry Strain Medical Records Phylogenetics Strain Availability Calendar Rats 101 Submissions Photo Archive
Pathways
Rat Community Forum Directory of Rat Laboratories Video Tutorials News RGD Publications RGD Presentations Archive Nomenclature Guidelines Resource Links Laboratory Resources Employment Resources
Advanced Search (OLGA)
Gene: Gtse1 (G-2 and S-phase expressed 1) Rattus norvegicus
Analyze
Symbol: Gtse1
Name: G-2 and S-phase expressed 1
RGD ID: 1563164
Description: Predicted to enable microtubule binding activity. Predicted to be located in cytoplasm and cytoskeleton. Predicted to be active in cytoplasmic microtubule. Orthologous to human GTSE1 (G2 and S-phase expressed 1); PARTICIPATES IN p53 signaling pathway; INTERACTS WITH 1,2-dimethylhydrazine; 1-naphthyl isothiocyanate; 17beta-estradiol.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: G two S phase expressed protein 1; G2 and S phase-expressed protein 1; LOC300126; RGD1563164; similar to B99 protein
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87118,829,793 - 118,846,662 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7118,829,903 - 118,846,661 (+)EnsemblGRCr8
mRatBN7.27116,949,997 - 116,966,826 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7116,950,053 - 116,966,806 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7118,701,232 - 118,717,935 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07120,926,858 - 120,943,561 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07120,896,421 - 120,913,124 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07126,736,416 - 126,753,221 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7126,736,732 - 126,753,220 (+)Ensemblrn6Rnor6.0
Rnor_5.07126,447,537 - 126,464,333 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47123,862,066 - 123,878,554 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7113,241,381 - 113,257,853 (+)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
(1->4)-beta-D-glucan  (ISO)
1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene  (ISO)
1,2-dimethylhydrazine  (EXP)
1-naphthyl isothiocyanate  (EXP)
17alpha-ethynylestradiol  (ISO)
17beta-estradiol  (EXP)
2,2',4,4',5,5'-hexachlorobiphenyl  (ISO)
2,2',5,5'-tetrachlorobiphenyl  (ISO)
2,3,7,8-tetrachlorodibenzodioxine  (EXP,ISO)
2,4,4'-trichlorobiphenyl  (ISO)
2,4-diaminotoluene  (ISO)
2-acetamidofluorene  (ISO)
3-isobutyl-1-methyl-7H-xanthine  (ISO)
3-methylcholanthrene  (ISO)
6-propyl-2-thiouracil  (EXP)
7,12-dimethyltetraphene  (ISO)
acetamide  (EXP)
aflatoxin B1  (EXP,ISO)
Aflatoxin B2 alpha  (ISO)
all-trans-retinoic acid  (ISO)
antirheumatic drug  (ISO)
arsane  (ISO)
arsenic atom  (ISO)
azathioprine  (ISO)
benzo[a]pyrene  (ISO)
benzo[a]pyrene diol epoxide I  (ISO)
beta-lapachone  (ISO)
bis(2-chloroethyl) sulfide  (ISO)
bis(2-ethylhexyl) phthalate  (EXP)
bisphenol A  (EXP,ISO)
bisphenol F  (ISO)
buta-1,3-diene  (ISO)
C60 fullerene  (EXP)
cadmium atom  (ISO)
caffeine  (ISO)
calcitriol  (ISO)
cannabidiol  (ISO)
carbon nanotube  (ISO)
chlorpyrifos  (ISO)
chromium(6+)  (ISO)
cobalt dichloride  (EXP,ISO)
copper atom  (ISO)
copper(0)  (ISO)
copper(II) sulfate  (ISO)
coumarin  (ISO)
coumestrol  (ISO)
crocidolite asbestos  (ISO)
CU-O LINKAGE  (ISO)
Cuprizon  (EXP)
cyclosporin A  (ISO)
DDE  (ISO)
dexamethasone  (ISO)
diallyl trisulfide  (ISO)
dibenz[a,h]anthracene  (ISO)
dichloroacetic acid  (ISO)
dicrotophos  (ISO)
diethyl maleate  (EXP)
dimethylarsinous acid  (ISO)
dorsomorphin  (ISO)
doxorubicin  (ISO)
Enterolactone  (ISO)
enzyme inhibitor  (ISO)
epoxiconazole  (ISO)
ethanol  (EXP)
fenamidone  (ISO)
fenofibrate  (EXP)
FR900359  (ISO)
furan  (EXP)
genistein  (ISO)
hexadecanoic acid  (ISO)
hydrogen peroxide  (ISO)
indometacin  (ISO)
iron(III) nitrilotriacetate  (EXP)
leflunomide  (EXP,ISO)
manganese atom  (ISO)
manganese(0)  (ISO)
manganese(II) chloride  (ISO)
methapyrilene  (EXP)
methyl methanesulfonate  (ISO)
methylmercury chloride  (ISO)
N-methyl-4-phenylpyridinium  (ISO)
N-nitrosodiethylamine  (ISO)
N-Nitrosopyrrolidine  (ISO)
niclosamide  (ISO)
ochratoxin A  (EXP)
okadaic acid  (ISO)
oxaliplatin  (EXP)
ozone  (ISO)
paclitaxel  (ISO)
paracetamol  (EXP,ISO)
paraquat  (EXP)
PCB138  (ISO)
perfluorohexanesulfonic acid  (ISO)
perfluorononanoic acid  (ISO)
perfluorooctane-1-sulfonic acid  (ISO)
perfluorooctanoic acid  (ISO)
phenethyl isothiocyanate  (ISO)
pirinixic acid  (ISO)
potassium dichromate  (ISO)
progesterone  (ISO)
propanal  (ISO)
resveratrol  (ISO)
Rutecarpine  (ISO)
SB 431542  (ISO)
silicon dioxide  (ISO)
sodium arsenite  (ISO)
sodium dichromate  (EXP)
Soman  (EXP)
sunitinib  (ISO)
testosterone  (ISO)
tetrachloromethane  (ISO)
thioacetamide  (EXP)
thiram  (ISO)
topotecan  (EXP)
trichostatin A  (ISO)
triclosan  (ISO)
trimellitic anhydride  (ISO)
Triptolide  (ISO)
troglitazone  (ISO)
trovafloxacin  (ISO)
tunicamycin  (ISO)
valproic acid  (ISO)
vincaleukoblastine  (ISO)

Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

Molecular Pathway Annotations     Click to see Annotation Detail View
References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. KEGG Annotation Import Pipeline Pipeline to import KEGG annotations from KEGG into RGD
3. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:10974554   PMID:19946888  


Genomics

Comparative Map Data
Gtse1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87118,829,793 - 118,846,662 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7118,829,903 - 118,846,661 (+)EnsemblGRCr8
mRatBN7.27116,949,997 - 116,966,826 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7116,950,053 - 116,966,806 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7118,701,232 - 118,717,935 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07120,926,858 - 120,943,561 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07120,896,421 - 120,913,124 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07126,736,416 - 126,753,221 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7126,736,732 - 126,753,220 (+)Ensemblrn6Rnor6.0
Rnor_5.07126,447,537 - 126,464,333 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47123,862,066 - 123,878,554 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7113,241,381 - 113,257,853 (+)NCBICelera
Cytogenetic Map7q34NCBI
GTSE1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382246,296,870 - 46,330,810 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2246,296,870 - 46,330,810 (+)Ensemblhg38GRCh38
GRCh372246,692,767 - 46,726,707 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362245,071,476 - 45,108,260 (+)NCBIBuild 36Build 36hg18NCBI36
Build 342245,013,330 - 45,050,112NCBI
Celera2230,600,021 - 30,634,091 (+)NCBICelera
Cytogenetic Map22q13.31NCBI
HuRef2229,636,647 - 29,670,714 (+)NCBIHuRef
CHM1_12246,651,368 - 46,685,447 (+)NCBICHM1_1
T2T-CHM13v2.02246,781,567 - 46,815,510 (+)NCBIT2T-CHM13v2.0
Gtse1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391585,743,928 - 85,760,774 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1585,743,946 - 85,760,774 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm381585,859,691 - 85,876,573 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1585,859,745 - 85,876,573 (+)Ensemblmm10GRCm38
MGSCv371585,690,137 - 85,707,003 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361585,687,742 - 85,704,339 (+)NCBIMGSCv36mm8
Celera1587,992,841 - 88,010,377 (+)NCBICelera
Cytogenetic Map15E2NCBI
cM Map1540.42NCBI
Gtse1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541330,413,967 - 30,438,040 (+)Ensembl
ChiLan1.0NW_00495541330,414,007 - 30,438,363 (+)NCBIChiLan1.0ChiLan1.0
GTSE1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22356,124,144 - 56,163,415 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12258,821,594 - 58,857,705 (+)NCBINHGRI_mPanPan1
PanPan1.12245,362,777 - 45,394,920 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2245,362,777 - 45,394,920 (+)EnsemblpanPan2panpan1.1
GTSE1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11019,863,064 - 19,883,972 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1019,863,255 - 19,883,506 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1019,785,529 - 19,806,551 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01020,596,600 - 20,617,607 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1020,596,877 - 20,617,624 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11020,317,190 - 20,338,190 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01020,629,758 - 20,651,012 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01020,811,723 - 20,832,742 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Gtse1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049453,591,771 - 3,607,775 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049366293,592,100 - 3,607,754 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049366293,590,101 - 3,607,625 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
GTSE1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl53,227,816 - 3,242,789 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.153,227,813 - 3,246,679 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.25545,215 - 564,097 (+)NCBISscrofa10.2Sscrofa10.2susScr3
GTSE1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11928,776,515 - 28,811,712 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1928,777,821 - 28,811,035 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366604596,718,613 - 96,751,924 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Gtse1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247523,555,283 - 3,572,409 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247523,554,960 - 3,580,180 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
Gtse1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11255,206,589 - 255,223,516 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Gtse1
107 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:302
Count of miRNA genes:192
Interacting mature miRNAs:216
Transcripts:ENSRNOT00000022012
Prediction methods:Microtar, Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
1358914Bp266Blood pressure QTL 266arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7115313999136544683Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
1582240Sffal1Serum free fatty acids level QTL 13.40.0021blood free fatty acid amount (VT:0001553)serum free fatty acids level (CMO:0000547)7118556868125929417Rat
2299163Iddm34Insulin dependent diabetes mellitus QTL 342.71blood glucose amount (VT:0000188)age at onset/diagnosis of type 1 diabetes mellitus (CMO:0001140)7116269196132020414Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 160 91 90 59 92 59 6 356 192 11 139 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000022012   ⟹   ENSRNOP00000022012
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7118,829,903 - 118,846,660 (+)Ensembl
mRatBN7.2 Ensembl7116,950,053 - 116,966,806 (+)Ensembl
Rnor_6.0 Ensembl7126,736,732 - 126,753,220 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000103791   ⟹   ENSRNOP00000090727
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7118,829,968 - 118,846,661 (+)Ensembl
mRatBN7.2 Ensembl7116,950,347 - 116,966,681 (+)Ensembl
RefSeq Acc Id: NM_001130500   ⟹   NP_001123972
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87118,830,173 - 118,846,661 (+)NCBI
mRatBN7.27116,950,335 - 116,966,825 (+)NCBI
Rnor_6.07126,736,732 - 126,753,220 (+)NCBI
Rnor_5.07126,447,537 - 126,464,333 (+)NCBI
RGSC_v3.47123,862,066 - 123,878,554 (+)RGD
Celera7113,241,381 - 113,257,853 (+)RGD
Sequence:
RefSeq Acc Id: XM_006242160   ⟹   XP_006242222
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87118,829,793 - 118,846,662 (+)NCBI
mRatBN7.27116,949,997 - 116,966,826 (+)NCBI
Rnor_6.07126,736,416 - 126,753,221 (+)NCBI
Rnor_5.07126,447,537 - 126,464,333 (+)NCBI
Sequence:
Protein Sequences
Protein RefSeqs NP_001123972 (Get FASTA)   NCBI Sequence Viewer  
  XP_006242222 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM15566 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000022012
  ENSRNOP00000022012.5
  ENSRNOP00000090727
  ENSRNOP00000090727.2
RefSeq Acc Id: NP_001123972   ⟸   NM_001130500
- UniProtKB: D3ZPA8 (UniProtKB/TrEMBL),   A6HTF6 (UniProtKB/TrEMBL),   A0A8I6GJ39 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006242222   ⟸   XM_006242160
- Peptide Label: isoform X1
- UniProtKB: D3ZPA8 (UniProtKB/TrEMBL),   A6HTF6 (UniProtKB/TrEMBL),   A0A8I6GJ39 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000022012   ⟸   ENSRNOT00000022012
Ensembl Acc Id: ENSRNOP00000090727   ⟸   ENSRNOT00000103791
Protein Domains
G2 and S phase-expressed protein 1 N-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZPA8-F1-model_v2 AlphaFold D3ZPA8 1-749 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695569
Promoter ID:EPDNEW_R6093
Type:initiation region
Name:Gtse1_1
Description:G-2 and S-phase expressed 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07126,736,758 - 126,736,818EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563164 AgrOrtholog
BioCyc Gene G2FUF-32523 BioCyc
Ensembl Genes ENSRNOG00000016148 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000022012 ENTREZGENE
  ENSRNOT00000022012.9 UniProtKB/TrEMBL
  ENSRNOT00000103791 ENTREZGENE
  ENSRNOT00000103791.2 UniProtKB/TrEMBL
InterPro DDA3/GTSE-1 UniProtKB/TrEMBL
  GTSE1_N UniProtKB/TrEMBL
KEGG Report rno:300126 UniProtKB/TrEMBL
NCBI Gene 300126 ENTREZGENE
PANTHER PTHR21584 UniProtKB/TrEMBL
  PTHR21584:SF10 UniProtKB/TrEMBL
Pfam GTSE1_N UniProtKB/TrEMBL
PhenoGen Gtse1 PhenoGen
RatGTEx ENSRNOG00000016148 RatGTEx
UniProt A0A8I6GJ39 ENTREZGENE, UniProtKB/TrEMBL
  A6HTF6 ENTREZGENE, UniProtKB/TrEMBL
  D3ZPA8 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-10-17 Gtse1  G-2 and S-phase expressed 1  Gtse1  G two S phase expressed protein 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-06 Gtse1  G two S phase expressed protein 1  RGD1563164_predicted  similar to B99 protein (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1563164_predicted  similar to B99 protein (predicted)  LOC300126  similar to B99 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC300126  similar to B99 protein      Symbol and Name status set to provisional 70820 PROVISIONAL