C7h12orf50 (similar to human chromosome 12 open reading frame 50) - Rat Genome Database

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Gene: C7h12orf50 (similar to human chromosome 12 open reading frame 50) Rattus norvegicus
Analyze
Symbol: C7h12orf50
Name: similar to human chromosome 12 open reading frame 50
RGD ID: 1563125
Description: Predicted to be involved in poly(A)+ mRNA export from nucleus. Orthologous to human C12orf50 (chromosome 12 open reading frame 50); INTERACTS WITH bisphenol A; 2-bromohexadecanoic acid (ortholog); aflatoxin B1 (ortholog).
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC500827; LOC500827; similar to hypothetical protein FLJ35821; uncharacterized protein C12orf50 homolog
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8737,296,242 - 37,329,893 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl737,292,758 - 37,329,889 (+)EnsemblGRCr8
mRatBN7.2735,406,147 - 35,443,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl735,411,555 - 35,443,320 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx737,398,774 - 37,430,532 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0739,570,647 - 39,602,457 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0739,303,849 - 39,335,659 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0740,316,165 - 40,350,482 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl740,316,639 - 40,350,474 (+)Ensemblrn6Rnor6.0
Rnor_5.0740,351,715 - 40,389,249 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4738,240,879 - 38,273,269 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera732,403,803 - 32,435,401 (+)NCBICelera
Cytogenetic Map7q21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
C7h12orf50
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8737,296,242 - 37,329,893 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl737,292,758 - 37,329,889 (+)EnsemblGRCr8
mRatBN7.2735,406,147 - 35,443,324 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl735,411,555 - 35,443,320 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx737,398,774 - 37,430,532 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0739,570,647 - 39,602,457 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0739,303,849 - 39,335,659 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0740,316,165 - 40,350,482 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl740,316,639 - 40,350,474 (+)Ensemblrn6Rnor6.0
Rnor_5.0740,351,715 - 40,389,249 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4738,240,879 - 38,273,269 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera732,403,803 - 32,435,401 (+)NCBICelera
Cytogenetic Map7q21NCBI
C12orf50
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381287,980,035 - 88,030,232 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1287,980,035 - 88,034,037 (-)Ensemblhg38GRCh38
GRCh371288,373,812 - 88,423,178 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361286,897,947 - 86,947,307 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1288,041,830 - 88,091,190 (-)NCBICelera
Cytogenetic Map12q21.32NCBI
HuRef1285,440,702 - 85,490,063 (-)NCBIHuRef
CHM1_11288,338,842 - 88,388,203 (-)NCBICHM1_1
T2T-CHM13v2.01287,961,910 - 88,012,108 (-)NCBIT2T-CHM13v2.0
1700017N19Rik
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm3910100,426,346 - 100,454,257 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl10100,426,346 - 100,454,263 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm3810100,590,484 - 100,618,395 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl10100,590,484 - 100,618,401 (+)Ensemblmm10GRCm38
MGSCv3710100,055,020 - 100,081,025 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv3610100,020,199 - 100,048,079 (+)NCBIMGSCv36mm8
Celera10102,524,343 - 102,550,378 (+)NCBICelera
Cytogenetic Map10D1NCBI
cM Map1051.51NCBI
LOC102010018
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540525,482,750 - 25,516,685 (-)Ensembl
ChiLan1.0NW_00495540525,482,450 - 25,520,053 (-)NCBIChiLan1.0ChiLan1.0
C10H12orf50
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21096,019,038 - 96,069,860 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11296,015,436 - 96,066,258 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01285,521,276 - 85,571,715 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11288,827,774 - 88,877,548 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1288,827,774 - 88,877,008 (-)EnsemblpanPan2panpan1.1
C15H12orf50
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11529,141,006 - 29,182,958 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1529,140,927 - 29,182,419 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1529,592,012 - 29,634,020 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01529,778,241 - 29,820,264 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1529,778,246 - 29,816,675 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11529,097,158 - 29,139,208 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01529,156,488 - 29,198,549 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01529,439,539 - 29,481,544 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
CUNH12orf50
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494531,024,956 - 31,060,308 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365075,175,266 - 5,207,462 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365075,175,266 - 5,207,462 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
C5H12orf50
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl594,492,267 - 94,521,046 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1594,489,714 - 94,520,179 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2599,176,496 - 99,207,210 (+)NCBISscrofa10.2Sscrofa10.2susScr3
C11H12orf50
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11183,354,053 - 83,402,189 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1183,354,350 - 83,398,963 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666037161,869,541 - 161,916,662 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
CUNH12orf50
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248376,995,192 - 7,034,227 (-)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248376,994,913 - 7,041,914 (-)NCBIHetGla 1.0HetGla 1.0hetGla2
C1H12orf50
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11178,921,703 - 178,953,274 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in C7h12orf50
327 total Variants

QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354644Spl4Serum phospholipid level QTL 44.9blood phospholipid amount (VT:0006084)blood phospholipid level (CMO:0001169)72154197751639954Rat
7411569Bw137Body weight QTL 1370.001body mass (VT:0001259)body weight gain (CMO:0000420)72380760668807606Rat
1578652Bmd15Bone mineral density QTL 155.2femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)71051708662346019Rat
9590102Sffal5Serum free fatty acids level QTL 58.620.001blood free fatty acid amount (VT:0001553)plasma free fatty acids level (CMO:0000546)7721609752216097Rat
631503Bp102Blood pressure QTL 1021.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)7170952746709527Rat
1549840Bss5Bone structure and strength QTL 59.8femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)72663805771638057Rat
1300127Srn1Serum renin concentration QTL 13.87blood renin amount (VT:0003349)plasma renin activity level (CMO:0000116)72417947886817926Rat
1358361Sradr5Stress Responsive Adrenal Weight QTL 55.55adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)731770293110435881Rat
2298547Neuinf5Neuroinflammation QTL 53.7nervous system integrity trait (VT:0010566)spinal cord Cd74 protein level (CMO:0002131)71011291660150541Rat
10059592Kidm45Kidney mass QTL 453.950.025kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)7946087754460877Rat
1354637Scl30Serum cholesterol level QTL 303.7blood cholesterol amount (VT:0000180)blood total cholesterol level (CMO:0000051)72154197751639954Rat
10755453Coatc12Coat color QTL 120coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)73299870277998702Rat
61410Bw19Body weight QTL 196.20.001body mass (VT:0001259)body weight (CMO:0000012)7166965846669658Rat
7411605Foco14Food consumption QTL 1424.10.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)73617876481178764Rat
1643004Pain2Pain QTL 21mechanical nociception trait (VT:0002734)self mutilation severity score (CMO:0002145)71011291699900612Rat
1300149Cm6Cardiac mass QTL 64.09heart mass (VT:0007028)heart left ventricle weight to body weight ratio (CMO:0000530)71104117804Rat
631534Lnnr1Liver neoplastic nodule remodeling QTL 13.850.001liver integrity trait (VT:0010547)liver remodeling tumorous lesion number to liver total tumorous lesion number ratio (CMO:0001705)73617876481178764Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1582260Bw72Body weight QTL 723.20.0043body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582261Bw69Body weight QTL 693.20.0048body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
1582262Bw75Body weight QTL 7530.0038body mass (VT:0001259)body weight (CMO:0000012)7139960528Rat
70190Mcs6Mammary carcinoma susceptibility QTL 62.29mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72862457565788017Rat
1300132Bp182Blood pressure QTL 1823.49arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)72154197786817926Rat
1300138Hrtrt9Heart rate QTL 94.72heart pumping trait (VT:2000009)heart rate (CMO:0000002)71049882055498820Rat
61369Mcs2Mammary carcinoma susceptibility QTL 23.38mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)72092049437412865Rat
738033Anxrr6Anxiety related response QTL 64.1exploratory behavior trait (VT:0010471)percentage of entries into a discrete space in an experimental apparatus (CMO:0000961)71746044762460447Rat
70207Niddm31Non-insulin dependent diabetes mellitus QTL 313.9blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)72005723265057232Rat
61439Cia8Collagen induced arthritis QTL 85.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)72718291472182914Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
7 3 7 86 31 29 14 41 14 6 120 60 75 36 47 15 12 12

Sequence


Ensembl Acc Id: ENSRNOT00000080150   ⟹   ENSRNOP00000075587
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl737,298,090 - 37,329,800 (+)Ensembl
mRatBN7.2 Ensembl735,411,555 - 35,443,320 (+)Ensembl
Rnor_6.0 Ensembl740,316,639 - 40,350,472 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000081374   ⟹   ENSRNOP00000069887
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl737,298,122 - 37,329,889 (+)Ensembl
mRatBN7.2 Ensembl735,411,555 - 35,443,320 (+)Ensembl
Rnor_6.0 Ensembl740,318,490 - 40,350,474 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000104994   ⟹   ENSRNOP00000090339
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl737,292,758 - 37,326,813 (+)Ensembl
mRatBN7.2 Ensembl735,411,555 - 35,440,246 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000142430   ⟹   ENSRNOP00000110578
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl737,292,758 - 37,329,801 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000163722   ⟹   ENSRNOP00000098660
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl737,292,758 - 37,329,801 (+)Ensembl
RefSeq Acc Id: NM_001024352   ⟹   NP_001019523
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8737,298,122 - 37,329,893 (+)NCBI
mRatBN7.2735,411,555 - 35,443,324 (+)NCBI
Rnor_6.0740,318,490 - 40,350,482 (+)NCBI
Rnor_5.0740,351,715 - 40,389,249 (+)NCBI
RGSC_v3.4738,240,879 - 38,273,269 (+)RGD
Celera732,403,803 - 32,435,401 (+)RGD
Sequence:
RefSeq Acc Id: XM_006241290   ⟹   XP_006241352
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8737,298,062 - 37,329,893 (+)NCBI
mRatBN7.2735,411,480 - 35,443,235 (+)NCBI
Rnor_6.0740,318,390 - 40,350,393 (+)NCBI
Rnor_5.0740,351,715 - 40,389,249 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006241291   ⟹   XP_006241353
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8737,296,242 - 37,329,893 (+)NCBI
mRatBN7.2735,409,663 - 35,443,235 (+)NCBI
Rnor_6.0740,316,165 - 40,350,393 (+)NCBI
Rnor_5.0740,351,715 - 40,389,249 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039079743   ⟹   XP_038935671
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8737,304,228 - 37,329,893 (+)NCBI
mRatBN7.2735,417,437 - 35,443,235 (+)NCBI
RefSeq Acc Id: XM_063264100   ⟹   XP_063120170
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8737,298,119 - 37,329,893 (+)NCBI
RefSeq Acc Id: XM_063264101   ⟹   XP_063120171
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8737,298,062 - 37,329,893 (+)NCBI
RefSeq Acc Id: XM_063264102   ⟹   XP_063120172
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8737,303,978 - 37,329,893 (+)NCBI
RefSeq Acc Id: NP_001019523   ⟸   NM_001024352
- UniProtKB: R9PXT2 (UniProtKB/TrEMBL),   A0A8I6A9W0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241353   ⟸   XM_006241291
- Peptide Label: isoform X2
- UniProtKB: Q6AYU0 (UniProtKB/Swiss-Prot),   A6IG97 (UniProtKB/TrEMBL),   A0A8I6A9W0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006241352   ⟸   XM_006241290
- Peptide Label: isoform X2
- UniProtKB: Q6AYU0 (UniProtKB/Swiss-Prot),   A6IG97 (UniProtKB/TrEMBL),   A0A8I6A9W0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000075587   ⟸   ENSRNOT00000080150
Ensembl Acc Id: ENSRNOP00000069887   ⟸   ENSRNOT00000081374
RefSeq Acc Id: XP_038935671   ⟸   XM_039079743
- Peptide Label: isoform X4
- UniProtKB: A0A8I6A9W0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000090339   ⟸   ENSRNOT00000104994
RefSeq Acc Id: XP_063120171   ⟸   XM_063264101
- Peptide Label: isoform X3
- UniProtKB: A0A8I6A9W0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120170   ⟸   XM_063264100
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A9W0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120172   ⟸   XM_063264102
- Peptide Label: isoform X5
Ensembl Acc Id: ENSRNOP00000110578   ⟸   ENSRNOT00000142430
Ensembl Acc Id: ENSRNOP00000098660   ⟸   ENSRNOT00000163722
Protein Domains
C3H1-type   Zinc-finger CCCH

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q6AYU0-F1-model_v2 AlphaFold Q6AYU0 1-415 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695170
Promoter ID:EPDNEW_R5695
Type:initiation region
Name:LOC500827_1
Description:similar to hypothetical protein FLJ35821
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0740,318,482 - 40,318,542EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1563125 AgrOrtholog
BioCyc Gene G2FUF-34232 BioCyc
Ensembl Genes ENSRNOG00000051928 Ensembl, ENTREZGENE
Ensembl Transcript ENSRNOT00000080150 ENTREZGENE
  ENSRNOT00000081374 ENTREZGENE
  ENSRNOT00000163722 ENTREZGENE
IMAGE_CLONE IMAGE:7112362 IMAGE-MGC_LOAD
InterPro DUF5571 UniProtKB/Swiss-Prot
  Znf-CCCH_3 UniProtKB/Swiss-Prot
KEGG Report rno:500827 UniProtKB/Swiss-Prot
MGC_CLONE MGC:93677 IMAGE-MGC_LOAD
NCBI Gene 500827 ENTREZGENE
PANTHER RIKEN CDNA 1700017N19 GENE UniProtKB/Swiss-Prot
  ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING UniProtKB/Swiss-Prot
Pfam DUF5571 UniProtKB/Swiss-Prot
  zf-CCCH_3 UniProtKB/Swiss-Prot
PhenoGen C7h12orf50 PhenoGen
RatGTEx ENSRNOG00000051928 RatGTEx
UniProt A0A8I6A9W0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2RBF5_RAT UniProtKB/TrEMBL
  A0ABK0LXY8_RAT UniProtKB/TrEMBL
  A6IG97 ENTREZGENE, UniProtKB/TrEMBL
  CL050_RAT UniProtKB/Swiss-Prot, ENTREZGENE
  R9PXT2 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 C7h12orf50  similar to human chromosome 12 open reading frame 50  LOC500827  similar to hypothetical protein FLJ35821  Symbol and Name Changed 1299863 APPROVED
2006-02-09 LOC500827  similar to hypothetical protein FLJ35821      Symbol and Name status set to provisional 70820 PROVISIONAL