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Gene: Ptchd4 (patched domain containing 4) Rattus norvegicus

Analyze

Symbol:

Ptchd4

Name:

patched domain containing 4

RGD ID:

1563020

Description:

Predicted to be active in membrane. Orthologous to human PTCHD4 (patched domain containing 4); INTERACTS WITH 2,3,7,8-Tetrachlorodibenzofuran; atrazine; bisphenol A.

Type:

protein-coding

RefSeq Status:

MODEL

Previously known as:

LOC301271; patched domain-containing protein 4; RGD1563020; similar to OTTHUMP00000016566

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PTCHD4 (patched domain containing 4)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Ptchd4 (patched domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Ptchd4 (patched domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PTCHD4 (patched domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	PTCHD4 (patched domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Ptchd4 (patched domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PTCHD4 (patched domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PTCHD4 (patched domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Ptchd4 (patched domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Ptchd4 (patched domain containing 4)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	PTCHD4 (patched domain containing 4)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Ptchd4 (patched domain containing 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	ptchd4 (patched domain containing 4)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Ptr	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	Ptr	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	ptr-11	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	ptr-13	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	ptr-15	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	ptr-16	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	ptr-17	Alliance	DIOPT (Ensembl Compara\|OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	ptr-18	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	ptr-22	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	ptr-4	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	ptchd4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	ptchd4	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	25,951,395 - 26,163,296 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	25,959,954 - 26,163,284 (-)	Ensembl				GRCr8
mRatBN7.2	9	18,462,934 - 18,666,272 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	18,463,737 - 18,665,705 (-)	Ensembl				mRatBN7.2
Rnor_6.0	9	21,137,150 - 21,339,398 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	21,141,077 - 21,338,582 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	20,001,317 - 20,202,955 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	14,220,416 - 14,424,280 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	16,162,302 - 16,367,307 (-)	NCBI		Celera
Cytogenetic Map	9	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dichloroethane (ISO)

17beta-estradiol (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

arsane (ISO)

arsenic atom (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

cadmium dichloride (ISO)

carbamazepine (ISO)

cisplatin (ISO)

cyclosporin A (ISO)

disodium selenite (ISO)

dorsomorphin (ISO)

ethanol (ISO)

glyphosate (EXP)

lucanthone (ISO)

maneb (ISO)

methotrexate (ISO)

mono(2-ethylhexyl) phthalate (ISO)

N-methyl-4-phenylpyridinium (ISO)

okadaic acid (ISO)

paracetamol (ISO)

paraquat (ISO)

phenylmercury acetate (ISO)

potassium dichromate (ISO)

progesterone (ISO)

quercetin (ISO)

quinolin-8-ol (ISO)

SB 431542 (ISO)

silver atom (ISO)

silver(0) (ISO)

sodium arsenite (ISO)

sunitinib (ISO)

thimerosal (ISO)

thiram (ISO)

triclosan (ISO)

urethane (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	GOA pipeline	RGD automated data pipeline
3.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Genomics

Comparative Map Data

Ptchd4
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	25,951,395 - 26,163,296 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	25,959,954 - 26,163,284 (-)	Ensembl				GRCr8
mRatBN7.2	9	18,462,934 - 18,666,272 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	18,463,737 - 18,665,705 (-)	Ensembl				mRatBN7.2
Rnor_6.0	9	21,137,150 - 21,339,398 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	21,141,077 - 21,338,582 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	20,001,317 - 20,202,955 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	14,220,416 - 14,424,280 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	16,162,302 - 16,367,307 (-)	NCBI		Celera
Cytogenetic Map	9	q13	NCBI

PTCHD4
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	6	47,856,673 - 48,111,197 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	6	47,856,673 - 48,111,197 (-)	Ensembl			hg38	GRCh38
GRCh37	6	47,824,409 - 48,078,933 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	6	47,953,998 - 48,144,384 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	6	49,402,015 - 49,592,692 (-)	NCBI		Celera
Cytogenetic Map	6	p12.3	NCBI
HuRef	6	47,573,689 - 47,763,951 (-)	NCBI		HuRef
CHM1_1	6	47,848,697 - 48,039,382 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	6	47,698,467 - 47,952,968 (-)	NCBI		T2T-CHM13v2.0

Ptchd4
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	17	42,626,646 - 43,004,339 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	17	42,626,838 - 42,815,968 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	17	42,315,851 - 42,507,742 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	17	42,315,947 - 42,505,077 (+)	Ensembl			mm10	GRCm38
MGSCv37	17	42,452,896 - 42,644,690 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	17	41,317,589 - 41,507,471 (+)	NCBI		MGSCv36	mm8
MGSCv36	17	41,780,176 - 41,971,225 (+)	NCBI		MGSCv36	mm8
Celera	17	45,721,159 - 45,918,575 (+)	NCBI		Celera
Cytogenetic Map	17	B3	NCBI
cM Map	17	19.65	NCBI

Ptchd4
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955437	12,254,176 - 12,423,871 (-)	Ensembl
ChiLan1.0	NW_004955437	12,253,731 - 12,423,865 (-)	NCBI	ChiLan1.0	ChiLan1.0

PTCHD4
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	5	62,369,575 - 62,607,535 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	6	58,235,720 - 58,473,613 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	6	47,440,981 - 47,652,718 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	6	48,724,043 - 48,915,518 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	6	48,724,318 - 48,916,307 (-)	Ensembl			panPan2	panpan1.1

PTCHD4
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	12	15,910,253 - 16,094,827 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	12	15,916,840 - 16,095,556 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	12	16,007,216 - 16,060,826 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	12	16,543,805 - 16,597,465 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	12	16,063,763 - 16,117,369 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	12	16,146,821 - 16,200,403 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	12	16,292,916 - 16,346,683 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Ptchd4
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024404946	51,274,358 - 51,456,893 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936476	12,503,474 - 12,676,577 (+)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936476	12,503,324 - 12,678,204 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PTCHD4
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	7	42,570,094 - 42,770,225 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	7	42,570,100 - 42,770,035 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1

PTCHD4
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	17	24,216,587 - 24,413,202 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	17	24,217,389 - 24,412,311 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666044	47,893,154 - 48,091,257 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Ptchd4
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624754	13,079,430 - 13,255,076 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624754	13,079,762 - 13,270,656 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Ptchd4
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	93,576,675 - 93,767,506 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Ptchd4
1757 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	41
Count of miRNA genes:	40
Interacting mature miRNAs:	41
Transcripts:	ENSRNOT00000016940
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5346479	50346479	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
7207814	Bmd91	Bone mineral density QTL 91	3.5		femur size trait (VT:1000369)	femoral neck cross-sectional area (CMO:0001697)	9	1	31250552	Rat
9589055	Scfw5	Subcutaneous fat weight QTL 5	5.55	0.001	subcutaneous adipose mass (VT:1000472)	abdominal subcutaneous fat pad weight (CMO:0002069)	9	496645	45496645	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	6214995	51214995	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
1300124	Cm4	Cardiac mass QTL 4	3.55		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	9	1	41763315	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5346479	50416711	Rat
631643	Bp120	Blood pressure QTL 120	3	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	6714888	29567695	Rat
9589158	Gluco65	Glucose level QTL 65	6.82	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	9	496645	45496645	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	21031430	49025574	Rat
7411592	Foco8	Food consumption QTL 8	7.4	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	496645	45496645	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	6214995	51214995	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
2	5	3	114	14	11	3	7	3	5	55	21	5	102	25	30	8	10	10

Sequence

Nucleotide Sequences


RefSeq Transcripts	XM_008757977	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008757979	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766914	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766916	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017603826	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000016940 ⟹ ENSRNOP00000016940

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	25,959,954 - 26,163,284 (-)	Ensembl
mRatBN7.2 Ensembl	9	18,463,737 - 18,665,373 (-)	Ensembl
Rnor_6.0 Ensembl	9	21,141,077 - 21,338,582 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118927 ⟹ ENSRNOP00000094067

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	25,960,531 - 26,162,912 (-)	Ensembl
mRatBN7.2 Ensembl	9	18,463,737 - 18,665,705 (-)	Ensembl

RefSeq Acc Id:

XM_008766914 ⟹ XP_008765136

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	25,951,395 - 26,163,296 (-)	NCBI
mRatBN7.2	9	18,462,934 - 18,666,272 (-)	NCBI
Rnor_6.0	9	21,137,150 - 21,339,398 (-)	NCBI

Sequence:

show sequence

GCATCATCCTCTCTGCTCCCTTTTCTTTGGCCAAAAGACAGAATTCGAGGGCACGGGGCATTAA
GAGGAGCTTGAAATCTGCCCCCTGGAGGAGGCGTGGAGCCACTCCCTCCTGGGTTCTGATGGCC
CCTGCTCCAATGGGCCAGCAGCGCCTTCACCCTGTACGTCTCCCATTCATTCCAGCCAGGAGGA
CAAGGAAAACAAAACTCTAAAAATAACTGTCAGCATCTTAAAAAGAGAAAAGCTTCGCTGTCAC
CACCACCCCCCTTCTTCTACTCCCGCCCTCTCTCCGCGCCACGGGGCACATGTCTGCTTCTTAC
AACACCGCGAGGCACATGGTCCCAGTTAGACACCGAACCCCATCGCGACCGAGAGGAAATCCAC
CTCTGTGGGACGCTCCGCACAGAACCGCCACCTCCAGCGAGGGAGGCCGGGGGACTGCAGCGGC
GACATGAAGAAGGGCTAGAGCGAGGGGACGCGGCTCATGCGACGGCCGGGAGCGCCTGCGAGCT
GGATCTGGTGGAGGATGCTGCGGCAGGTGCTTCGCAGAGGGCTCCAGTCATTCTGCCACAGGCT
GGGCTTATGCGTGAGCCGGCACCCGGTCTTTTTCCTCACCGTGCCGGCAGTCCTGACCATCACC
TTCGGCCTCAGCGCGCTCAACCGCTTCCAGACCGAGAGCGACCTGGAGCGCCTGGTTGCTCCCA
GCCACAGCCTGGCCAAGATCGAGCGCAGCCTAGCCAGCAGCCTTTTCCCCCTGGACCAGTCCAA
AAGCCAGCTCTATTCGGACTTACACACCCCTGGGAGGTATGGCAGGGTGATCCTCCTCTCCCCA
CCCGGGGACAATATTTTGCTCCAGGCTGAGGGGATCCTGCAGACCCACCGAGCCGTGATGGAAA
TGAAGGTGAACCACAAGGGCTATAATTATACTTTTTCCCATCTGTGTGTGTTGAGAAATCAGGA
TAAGAAATGCGTGCTGGATGATATTATTTCAGTGCTAGAGGATCTCAGGCAGGCTGCCGTCTCC
AATAAGACAACAGCCAGGGTGCAAGTAAGGTATCCCAACACTAAATTAAAGGATGGGAGGAACA
GTTTTATTGGACACCAGCTGGGCGGGGTAGTGGAAGTGCCAAACAGCAAAGACCAGCGGGTCAA
GTCAGCCAGAGCCATTCAAATCACCTACTACCTCCAGACCTATGGTTCTGCCACTCAAGACCTC
ATAGGGGAGAAGTGGGAGAATGAGTTCTGTCAGCTTATGAGGAAGCTCCAGGATGAGCACCAAG
ACCTCCAACTGTACTCTCTGGCATCTTTTAGCCTGTGGAGAGACTTTCATAAGACCAGCATCCT
GACCAGAAGCAAGGTCCTGGTGAGCCTCGTGCTGATCCTGACCACAGCCACCCTGTCCAGCTCC
ATGAAGGACTGCTTGCGCAGTAAGCCCTTCCTGGGCCTCCTGGGGGTGCTCACGGTATGCATTT
CCATCGCCACTGCAGCCGGGATCTTCTTCATCACTGATGGGAAGTACAACTCCACCCTGCTGGG
AATCCCTTTCTTCGCCATGGGTCATGGAACTAAAGGAGTATTTGAGCTTCTGTCTGGATGGCGG
AGAACCAAAGAGAATTTACCCTTCAAAGACAGGGTAGCAGACGCCTATTCTGATGTGATGGTCA
CCTACACCATGACCAGTTCCCTGTACTTCATCACGTTTGGTATGGGTGCCAGCCCCTTCACAAA
CATAGAGGCAGTGAAGATCTTCTGTCAGAATATGTGTGTCTCTATTCTATTGAACTACTTCTAC
ATTTTCTCTTTCTTTGGCTCTTGCCTGGTCTTTGCTGGACAACTTGAGCAAAATCGATACCACA
GCATCTTTTGCTGTAAGATCCCTTCTGCAGAATACCTGGACCGCAAGCCTGTGTGGTTCCAGAC
AGTAATGAGTGATGGGCACCAACAGACATCCCATCATGAGACAAACCCCTACCAGCACCATTTC
ATCCAGCACTTCCTCCGAGAACATTACAATGAGTGGATTACCAATATCTATGTGAAGCCATTTG
TGGTCATCCTGTATCTCATTTATGCCTCTTTCTCCTTCATGGGGTGCTTGCAGATCAGTGATGG
AGCCAGCATTATCAACCTACTAGCCAGTGACTCACCGAGTGTGTCCTATGCCATGGTTCAGCAA
AAATATTTCAGCAACTATAGCCCTGTAATAGGATTCTACGTCTATGAACCCCTGGAGTACTGGA
ACAGCAGCGTCCAGGAGGATCTGCAGAGGCTCTGTAGTGGGTTCACTGCAGTGTCCTGGGTGGA
ACAGTACTACCAGTTTCTAAAAGCGAGCAACATCAGTGCCAATAACAAGACCGACTTCATCAGT
GTCCTACAAAGCTCGTTTTTAAAAAAGCCAGAGTTTCAACACTTTCGGAATGATATCATTTTCT
CCAGGGCTGGGGATGAAAACAACATCATCGCTTCTCGCTTATATCTGGTGGCCAGGACTAGCAG
GGACAAGCAGAAGGAAGTCATCGAAGTTCTGGACAAGTTGAGGCCCCTGTCTCTCTCAAAGAGT
ATCCGGTTCATCGTGTTTAACCCTTCCTTTGTTTTCACAGACCATAATAGTCTGTCAGTCACTG
TGCCTGTTCTGATCGCAGGCTTTGGGGTTCTCCTGGTGTTAGTCCTGACTTTCTTCCTAGTGAT
CCATCCTCTGGGAAATTTCTGGCTAATTCTTAGTGTCACCTCAATTGAGCTGGGCGTTCTGGGC
TTAATGACATTGTGGAATGTCGACATGGATTGCATTTCTATCTTGTGCCTTATCTACACTTTAA
ATTTTGCCATTGACCACTGTGCACCACTGCTTTACACATTTGTACTAGCGACTGAGCACACCAG
AACACAATGTATAAAAAGCTCCCTGCAAGAGCATGGGACAGCCATTTTGCAAAACATTACTTCT
TTTCTTATTGGGTTGGTCCCCCTCCTCTTTGTGCCTTCAAACCTGACCTTCACACTGTTCAAAT
GCTTGCTGCTGACCGGGGGTTGCACGCTTCTGCACTGTTTTGTTATCTTACCTGTGTTCCTAAC
CTTTTTTCCTCCTTCCAAAAAGCACCACAAGAAAAAGAAACGTGCCAAACGAAAGGAGAGAGAG
GAAATTGAATGCATAGAAATCCAAGAGAACCCAGACCATGTCACCACAGTCTGAGGGTGGAGAC
TTTTTCTTTTCCAGTGTTGCACAATGATGCAGGGCTAGTAAGGCTCAGACCTCAGCTGCTTGGG
CTGGCCAGGGGTAACAAGGCAAGTCAGATCAAGAGTGTATTATTCATGACACATCCAAGGGTCT
GCTTTTTTCAGAGAAAGAGATGATAAAATGAGGTGAAGTCCTATACAACCTTGTGCTCCATGAG
AGATAATTTTCCAGACATTGATCTTAGAGTTTTTTCTGAGAAATGGATGGATTGGTGTGTTAAA
ATGGAAGGCTAAAATATCTAAAGATTCTTAGAAGAAATGGAGAAGGGAGTAAGTGGTCTCCAGA
TAGGGGGTAAGACAGAGAAAATGTCTAATTTGTCAAGTCACTTCATGTTTGCTTTTTGAACAGG
TCAAGCAAAGGAAACTTATGCACATGGGAAGTACATATTTAATCCTGGCTAAACCAAAGGACTG
GACCACCCAATCCACTTTGTGTGTACATATAAGTATACATCTACATGTACTTATATTTGTCTTT
AGTGTGCATTGGTGTTTTGGTGAAAGAAAGTGTCCATTTTCAGGTAGGCTGGCCTCTCTCTAAA
AGTCAAATCAGCTTTAGCCAAATATATAAGCTCATTAGAGAAGATGCAAAATATCTAATTGGCC
ACTTGAAATCAACTCAACTGTCTAGATAACAAGATTATTATGAACTGTTTGATAACAAAATAAA
CAGAAATTTGAATCCATTAAATTCTACATATCATGTTGTTGGTCACTGAGATCCTACCTTTTGA
GATGACTTCACAAAAAAAAAAAAAACCCAAAAGGTATTTGAGTTAATTAGCATGTGAACAAATG
TTTAAAATCTAAAATAGTTGAGATAGCTTGTCATTAGCCTTTAACATTTCTGTGCATTTACATG
GAAGGCCAGCATGGCTGCTTTTGGATACCTCACTCACCTGAAAATGAGTACTTTAAGCACATTA
TTTTGGCGTACATCTGTAAGGATACACAGTGTATGTGAGAGATGAAAAGAAATAATGAGACACC
CTATCATAGTTAAGCATTCTTATGTTAGATGGTGAAAATACTATGTCGCATATAACAGTTAACA
CAGGAAAAAGAAAATATCTGGGGAACTTAGTGAGTAAAATGGGTCATCTACCATTCACCATTTC
AGCATCAAACAGTCCATAGTATAAGAAAAACTTGCAAACTCTATAGATTCTAGTGTGTTCCTTG
GAATACGTTTGGAAGCATTAACCCAGACCATGGTCACAATGATGGTGGTCACCATAACCCCTAC
AGTGTCATTGTGTTGCTTGTTGGAGTACCGTTGTCTTCATTAACTAGAAAGTAAACTCCTATGG
CAAGCACAGCTATCTACAGGTGCCATATTAACTGTGTGTCATTGTGCCTGGACTCTACATTTAA
AAAAACAAGTACCGAGGTAAATGTTTCCATTGAGTTGGTGTTTAAAACTGTACCCCAGGCAGGT
ACCCAATCTGCTGGGTACTTACAAGGACTAAGGCTGCTATTCATGTTGGAGAACATTGCTAGAA
AATTCCTTTTCCAGGCCAAATAGAGAACCTAAGGAACAATTTATTTCTGGGTAGAATAAAACAA
ATGCCTAATGATTACACATCCTGCTAACAAGTTCTTTTTCCTGAGGAAAATGTATAATCCCCAC
CAATTTGGGTTGTATAATTTAAAGGCATTAGCAATACTAATGCTTTAAAAGGCAAAGTACAACT
AGAACTTTTAGAAATTTCCATTCCTGTTTCAGTTTTAGGAAATGATATTGATAGATAACAATGC
TCTTCTAAATGATGCAAATTTTTAAATAGACATCATTTAAATAAAACTTTATTGAAATGGCTTT
TGTTCTATTCTACCTTAAAGCCACTGTGTTTCAATGTCTCCCCTGATGTGGGTACAATAACTAT
AGAATTAAGGAGAGACCATAACTTGCCATAACCACATTTGGTGTTTTCACTGTATCTGTAAAGT
CATGTGACAGGTAATGCCAGCCTTTCATCTCAAGAACTTCTGTGCTAGGGAGAACAGATGTTTG
GACAGTTGGCCTCCGGGCCATGAGCTAATAGTTGAAGTTGAAGTTTCTGAGCAGATTTTGCAGT
TGGAGAACAGAATTCCTCTTTCAAAGCTACTCATCACTTATGAAGATTGCTACCACTCACACCT
GTTTATAAAGACAGCCACTAAGAAGCTGAGGATTCCATGTCGCTCTGTGTTCAGTGAAACTCCA
TCACTTCACCTATTTTTGATTTAAAGATAACTTACTTGAGATTTACAGTTACCCTAAACCATTT
CAGATCCAAAAAAATAAACAACAACAACAAGATTGACAAGCTAACTGGCAAGCTTGCAAGTCGC
CAAATACATGGCAGTACCACTGCATATTCTGCCAAAGCACTGATTTCGATGTCGCCCAAAGCAC
TTGGGTGGGGAAAGACTTGTTTATGTATTAGGTATTGTCGTCAAGGATCAGACTTGTAGGACAA
ACAGGAATTTCTCATTGTCCGACTGTCTAGAGGGGTGCATTTTAGAAGGGATGCTATCTTCTCC
AGAACACGTGATTCTCTCTAAGGATGTGTAGCAATAATTAACTGAAATGAAATTTCATGCTCTG
GAAGAGTTAATAGAATGCCCAAAATGCCTTGTCTTGGTCTTAGGAAATAATATAAGCCCAAAAG
GATCTCCCCAAGCATCACGCAAACCTTCCAACCTCACTTTGAAGCAGACATCTCCAAGATTTCC
TTCACTGAGTACCAACTACTAAAATATGAGATCATGATTTGCAGGAAACCCTCCAAGCTCAGCC
TTTTCTGTTTGTGCATTCCTCTTTCTAGTATGTCAGGTTTTTACTTGCTTTGTCCATTGGGAAG
TAGCAATGGCATTCAAGTAGGACTTTACTATCAAACAGAGGGCCATTCGAACCCTAGAAGAAAT
CAGTGGGGGAATCTTTTAGAATTGCGGAGTATTTTATTTACTTATTGTAATGTATTTTCCCTTG
AAATGGGAGATTTTTAAAAACTTGTGAACCCCAGACCTTTTCTTGTTTAAACTGGACTGTGTTC
CCCATCAGAATGTGAAACATTCCTTCTGTTTTATGTTCCATTTTCCTCAATGAGGAACTCACGT
AAATTACCAGCCAAGATTTGTCTAAAAGTTCCATGGGCTAACCTACATCATGTGGAAGTCTGTT
GAAAGAATAGAGATGTACATGTTTTCCGATGGGGTCTTGCAATGACTGTGAACCTCTTTGAAGG
CTGTGCACGAGAACCCTATGACAGAGCTATTCTGAACTAAGTTTGTATCACATGAAAGTCTTTC
TTCTAATTGATTTCTATCCATTTCCACAGGAAAAATAATTTATGTTTCATCTTGTATGGTGAAA
GGAAGAAGTGTGATCCATGTAGCTCCTACGATGCTATAATAGCCATTCTTGTATGTCGAACTTG
AGTGTAAGAGCTATGTCCTCCACTCTGTAATTATCCATTTGCACTTTACCATAACAAGCTAATC
CTTCTAGACTTGTGATTCTAGCTGGGGATTAACTATTGCCATTCAGAATTGTGCGTATTTTTAT
ATGTTGACTGTAAATATTGTCATTACAGTCAAATATTTTTATAATCAAATATTTATAAATGCAT
GGCACAGTGCACGCATGATTACTAGTATGTAGATTATTAAAGACACTATTTTCAGGGTTATTAC
ACTTTTTATTAAAATTCTCATATCCTCTATCATGAATGCCTCATGGGGTTTTAGTTGCAAAGAC
CTAAAGTCCATAAAAAGAACTTCATGCTGAGGGAAGCAATCAGAAAATTGCTTTCTCACAGTGT
CAACAACAGCCATCTACTCTAAGATGACTATTGGGAAAGCGCAGGGGCTAAGCCAGGTCTCTGG
GTAAAGCACCAGG

hide sequence

RefSeq Acc Id:

XM_008766916 ⟹ XP_008765138

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	25,951,395 - 26,162,592 (-)	NCBI
mRatBN7.2	9	18,462,934 - 18,665,373 (-)	NCBI
Rnor_6.0	9	21,137,150 - 21,338,607 (-)	NCBI

Sequence:

show sequence

TAGCCCCAGCGCTTACACATGTCACATGTGCTTTTTAAGACGGCCGGGAGCGCCTGCGAGCTGG
ATCTGGTGGAGGATGCTGCGGCAGGTGCTTCGCAGAGGGCTCCAGTCATTCTGCCACAGGCTGG
GCTTATGCGTGAGCCGGCACCCGGTCTTTTTCCTCACCGTGCCGGCAGTCCTGACCATCACCTT
CGGCCTCAGCGCGCTCAACCGCTTCCAGACCGAGAGCGACCTGGAGCGCCTGGTTGCTCCCAGC
CACAGCCTGGCCAAGATCGAGCGCAGCCTAGCCAGCAGCCTTTTCCCCCTGGACCAGTCCAAAA
GCCAGCTCTATTCGGACTTACACACCCCTGGGAGGTATGGCAGGGTGATCCTCCTCTCCCCACC
CGGGGACAATATTTTGCTCCAGGCTGAGGGGATCCTGCAGACCCACCGAGCCGTGATGGAAATG
AAGGATGGGAGGAACAGTTTTATTGGACACCAGCTGGGCGGGGTAGTGGAAGTGCCAAACAGCA
AAGACCAGCGGGTCAAGTCAGCCAGAGCCATTCAAATCACCTACTACCTCCAGACCTATGGTTC
TGCCACTCAAGACCTCATAGGGGAGAAGTGGGAGAATGAGTTCTGTCAGCTTATGAGGAAGCTC
CAGGATGAGCACCAAGACCTCCAACTGTACTCTCTGGCATCTTTTAGCCTGTGGAGAGACTTTC
ATAAGACCAGCATCCTGACCAGAAGCAAGGTCCTGGTGAGCCTCGTGCTGATCCTGACCACAGC
CACCCTGTCCAGCTCCATGAAGGACTGCTTGCGCAGTAAGCCCTTCCTGGGCCTCCTGGGGGTG
CTCACGGTATGCATTTCCATCGCCACTGCAGCCGGGATCTTCTTCATCACTGATGGGAAGTACA
ACTCCACCCTGCTGGGAATCCCTTTCTTCGCCATGGGTCATGGAACTAAAGGAGTATTTGAGCT
TCTGTCTGGATGGCGGAGAACCAAAGAGAATTTACCCTTCAAAGACAGGGTAGCAGACGCCTAT
TCTGATGTGATGGTCACCTACACCATGACCAGTTCCCTGTACTTCATCACGTTTGGTATGGGTG
CCAGCCCCTTCACAAACATAGAGGCAGTGAAGATCTTCTGTCAGAATATGTGTGTCTCTATTCT
ATTGAACTACTTCTACATTTTCTCTTTCTTTGGCTCTTGCCTGGTCTTTGCTGGACAACTTGAG
CAAAATCGATACCACAGCATCTTTTGCTGTAAGATCCCTTCTGCAGAATACCTGGACCGCAAGC
CTGTGTGGTTCCAGACAGTAATGAGTGATGGGCACCAACAGACATCCCATCATGAGACAAACCC
CTACCAGCACCATTTCATCCAGCACTTCCTCCGAGAACATTACAATGAGTGGATTACCAATATC
TATGTGAAGCCATTTGTGGTCATCCTGTATCTCATTTATGCCTCTTTCTCCTTCATGGGGTGCT
TGCAGATCAGTGATGGAGCCAGCATTATCAACCTACTAGCCAGTGACTCACCGAGTGTGTCCTA
TGCCATGGTTCAGCAAAAATATTTCAGCAACTATAGCCCTGTAATAGGATTCTACGTCTATGAA
CCCCTGGAGTACTGGAACAGCAGCGTCCAGGAGGATCTGCAGAGGCTCTGTAGTGGGTTCACTG
CAGTGTCCTGGGTGGAACAGTACTACCAGTTTCTAAAAGCGAGCAACATCAGTGCCAATAACAA
GACCGACTTCATCAGTGTCCTACAAAGCTCGTTTTTAAAAAAGCCAGAGTTTCAACACTTTCGG
AATGATATCATTTTCTCCAGGGCTGGGGATGAAAACAACATCATCGCTTCTCGCTTATATCTGG
TGGCCAGGACTAGCAGGGACAAGCAGAAGGAAGTCATCGAAGTTCTGGACAAGTTGAGGCCCCT
GTCTCTCTCAAAGAGTATCCGGTTCATCGTGTTTAACCCTTCCTTTGTTTTCACAGACCATAAT
AGTCTGTCAGTCACTGTGCCTGTTCTGATCGCAGGCTTTGGGGTTCTCCTGGTGTTAGTCCTGA
CTTTCTTCCTAGTGATCCATCCTCTGGGAAATTTCTGGCTAATTCTTAGTGTCACCTCAATTGA
GCTGGGCGTTCTGGGCTTAATGACATTGTGGAATGTCGACATGGATTGCATTTCTATCTTGTGC
CTTATCTACACTTTAAATTTTGCCATTGACCACTGTGCACCACTGCTTTACACATTTGTACTAG
CGACTGAGCACACCAGAACACAATGTATAAAAAGCTCCCTGCAAGAGCATGGGACAGCCATTTT
GCAAAACATTACTTCTTTTCTTATTGGGTTGGTCCCCCTCCTCTTTGTGCCTTCAAACCTGACC
TTCACACTGTTCAAATGCTTGCTGCTGACCGGGGGTTGCACGCTTCTGCACTGTTTTGTTATCT
TACCTGTGTTCCTAACCTTTTTTCCTCCTTCCAAAAAGCACCACAAGAAAAAGAAACGTGCCAA
ACGAAAGGAGAGAGAGGAAATTGAATGCATAGAAATCCAAGAGAACCCAGACCATGTCACCACA
GTCTGAGGGTGGAGACTTTTTCTTTTCCAGTGTTGCACAATGATGCAGGGCTAGTAAGGCTCAG
ACCTCAGCTGCTTGGGCTGGCCAGGGGTAACAAGGCAAGTCAGATCAAGAGTGTATTATTCATG
ACACATCCAAGGGTCTGCTTTTTTCAGAGAAAGAGATGATAAAATGAGGTGAAGTCCTATACAA
CCTTGTGCTCCATGAGAGATAATTTTCCAGACATTGATCTTAGAGTTTTTTCTGAGAAATGGAT
GGATTGGTGTGTTAAAATGGAAGGCTAAAATATCTAAAGATTCTTAGAAGAAATGGAGAAGGGA
GTAAGTGGTCTCCAGATAGGGGGTAAGACAGAGAAAATGTCTAATTTGTCAAGTCACTTCATGT
TTGCTTTTTGAACAGGTCAAGCAAAGGAAACTTATGCACATGGGAAGTACATATTTAATCCTGG
CTAAACCAAAGGACTGGACCACCCAATCCACTTTGTGTGTACATATAAGTATACATCTACATGT
ACTTATATTTGTCTTTAGTGTGCATTGGTGTTTTGGTGAAAGAAAGTGTCCATTTTCAGGTAGG
CTGGCCTCTCTCTAAAAGTCAAATCAGCTTTAGCCAAATATATAAGCTCATTAGAGAAGATGCA
AAATATCTAATTGGCCACTTGAAATCAACTCAACTGTCTAGATAACAAGATTATTATGAACTGT
TTGATAACAAAATAAACAGAAATTTGAATCCATTAAATTCTACATATCATGTTGTTGGTCACTG
AGATCCTACCTTTTGAGATGACTTCACAAAAAAAAAAAAAACCCAAAAGGTATTTGAGTTAATT
AGCATGTGAACAAATGTTTAAAATCTAAAATAGTTGAGATAGCTTGTCATTAGCCTTTAACATT
TCTGTGCATTTACATGGAAGGCCAGCATGGCTGCTTTTGGATACCTCACTCACCTGAAAATGAG
TACTTTAAGCACATTATTTTGGCGTACATCTGTAAGGATACACAGTGTATGTGAGAGATGAAAA
GAAATAATGAGACACCCTATCATAGTTAAGCATTCTTATGTTAGATGGTGAAAATACTATGTCG
CATATAACAGTTAACACAGGAAAAAGAAAATATCTGGGGAACTTAGTGAGTAAAATGGGTCATC
TACCATTCACCATTTCAGCATCAAACAGTCCATAGTATAAGAAAAACTTGCAAACTCTATAGAT
TCTAGTGTGTTCCTTGGAATACGTTTGGAAGCATTAACCCAGACCATGGTCACAATGATGGTGG
TCACCATAACCCCTACAGTGTCATTGTGTTGCTTGTTGGAGTACCGTTGTCTTCATTAACTAGA
AAGTAAACTCCTATGGCAAGCACAGCTATCTACAGGTGCCATATTAACTGTGTGTCATTGTGCC
TGGACTCTACATTTAAAAAAACAAGTACCGAGGTAAATGTTTCCATTGAGTTGGTGTTTAAAAC
TGTACCCCAGGCAGGTACCCAATCTGCTGGGTACTTACAAGGACTAAGGCTGCTATTCATGTTG
GAGAACATTGCTAGAAAATTCCTTTTCCAGGCCAAATAGAGAACCTAAGGAACAATTTATTTCT
GGGTAGAATAAAACAAATGCCTAATGATTACACATCCTGCTAACAAGTTCTTTTTCCTGAGGAA
AATGTATAATCCCCACCAATTTGGGTTGTATAATTTAAAGGCATTAGCAATACTAATGCTTTAA
AAGGCAAAGTACAACTAGAACTTTTAGAAATTTCCATTCCTGTTTCAGTTTTAGGAAATGATAT
TGATAGATAACAATGCTCTTCTAAATGATGCAAATTTTTAAATAGACATCATTTAAATAAAACT
TTATTGAAATGGCTTTTGTTCTATTCTACCTTAAAGCCACTGTGTTTCAATGTCTCCCCTGATG
TGGGTACAATAACTATAGAATTAAGGAGAGACCATAACTTGCCATAACCACATTTGGTGTTTTC
ACTGTATCTGTAAAGTCATGTGACAGGTAATGCCAGCCTTTCATCTCAAGAACTTCTGTGCTAG
GGAGAACAGATGTTTGGACAGTTGGCCTCCGGGCCATGAGCTAATAGTTGAAGTTGAAGTTTCT
GAGCAGATTTTGCAGTTGGAGAACAGAATTCCTCTTTCAAAGCTACTCATCACTTATGAAGATT
GCTACCACTCACACCTGTTTATAAAGACAGCCACTAAGAAGCTGAGGATTCCATGTCGCTCTGT
GTTCAGTGAAACTCCATCACTTCACCTATTTTTGATTTAAAGATAACTTACTTGAGATTTACAG
TTACCCTAAACCATTTCAGATCCAAAAAAATAAACAACAACAACAAGATTGACAAGCTAACTGG
CAAGCTTGCAAGTCGCCAAATACATGGCAGTACCACTGCATATTCTGCCAAAGCACTGATTTCG
ATGTCGCCCAAAGCACTTGGGTGGGGAAAGACTTGTTTATGTATTAGGTATTGTCGTCAAGGAT
CAGACTTGTAGGACAAACAGGAATTTCTCATTGTCCGACTGTCTAGAGGGGTGCATTTTAGAAG
GGATGCTATCTTCTCCAGAACACGTGATTCTCTCTAAGGATGTGTAGCAATAATTAACTGAAAT
GAAATTTCATGCTCTGGAAGAGTTAATAGAATGCCCAAAATGCCTTGTCTTGGTCTTAGGAAAT
AATATAAGCCCAAAAGGATCTCCCCAAGCATCACGCAAACCTTCCAACCTCACTTTGAAGCAGA
CATCTCCAAGATTTCCTTCACTGAGTACCAACTACTAAAATATGAGATCATGATTTGCAGGAAA
CCCTCCAAGCTCAGCCTTTTCTGTTTGTGCATTCCTCTTTCTAGTATGTCAGGTTTTTACTTGC
TTTGTCCATTGGGAAGTAGCAATGGCATTCAAGTAGGACTTTACTATCAAACAGAGGGCCATTC
GAACCCTAGAAGAAATCAGTGGGGGAATCTTTTAGAATTGCGGAGTATTTTATTTACTTATTGT
AATGTATTTTCCCTTGAAATGGGAGATTTTTAAAAACTTGTGAACCCCAGACCTTTTCTTGTTT
AAACTGGACTGTGTTCCCCATCAGAATGTGAAACATTCCTTCTGTTTTATGTTCCATTTTCCTC
AATGAGGAACTCACGTAAATTACCAGCCAAGATTTGTCTAAAAGTTCCATGGGCTAACCTACAT
CATGTGGAAGTCTGTTGAAAGAATAGAGATGTACATGTTTTCCGATGGGGTCTTGCAATGACTG
TGAACCTCTTTGAAGGCTGTGCACGAGAACCCTATGACAGAGCTATTCTGAACTAAGTTTGTAT
CACATGAAAGTCTTTCTTCTAATTGATTTCTATCCATTTCCACAGGAAAAATAATTTATGTTTC
ATCTTGTATGGTGAAAGGAAGAAGTGTGATCCATGTAGCTCCTACGATGCTATAATAGCCATTC
TTGTATGTCGAACTTGAGTGTAAGAGCTATGTCCTCCACTCTGTAATTATCCATTTGCACTTTA
CCATAACAAGCTAATCCTTCTAGACTTGTGATTCTAGCTGGGGATTAACTATTGCCATTCAGAA
TTGTGCGTATTTTTATATGTTGACTGTAAATATTGTCATTACAGTCAAATATTTTTATAATCAA
ATATTTATAAATGCATGGCACAGTGCACGCATGATTACTAGTATGTAGATTATTAAAGACACTA
TTTTCAGGGTTATTACACTTTTTATTAAAATTCTCATATCCTCTATCATGAATGCCTCATGGGG
TTTTAGTTGCAAAGACCTAAAGTCCATAAAAAGAACTTCATGCTGAGGGAAGCAATCAGAAAAT
TGCTTTCTCACAGTGTCAACAACAGCCATCTACTCTAAGATGACTATTGGGAAAGCGCAGGGGC
TAAGCCAGGTCTCTGGGTAAAGCACCAGG

hide sequence

RefSeq Acc Id:

XM_017596760 ⟹ XP_017452249

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	25,951,395 - 26,162,592 (-)	NCBI
mRatBN7.2	9	18,462,934 - 18,665,373 (-)	NCBI
Rnor_6.0	9	21,137,150 - 21,338,607 (-)	NCBI

Sequence:

show sequence

TAGCCCCAGCGCTTACACATGTCACATGTGCTTTTTAAGACGGCCGGGAGCGCCTGCGAGCTGG
ATCTGGTGGAGGATGCTGCGGCAGGTGCTTCGCAGAGGGCTCCAGTCATTCTGCCACAGGCTGG
GCTTATGCGTGAGCCGGCACCCGGTCTTTTTCCTCACCGTGCCGGCAGTCCTGACCATCACCTT
CGGCCTCAGCGCGCTCAACCGCTTCCAGACCGAGAGCGACCTGGAGCGCCTGGTTGCTCCCAGC
CACAGCCTGGCCAAGATCGAGCGCAGCCTAGCCAGCAGCCTTTTCCCCCTGGACCAGTCCAAAA
GCCAGCTCTATTCGGACTTACACACCCCTGGGAGGTATGGCAGGGTGATCCTCCTCTCCCCACC
CGGGGACAATATTTTGCTCCAGGCTGAGGGGATCCTGCAGACCCACCGAGCCGTGATGGAAATG
AAGGTGAACCACAAGGGCTATAATTATACTTTTTCCCATCTGTGTGTGTTGAGAAATCAGGATA
AGAAATGCGTGCTGGATGATATTATTTCAGTGCTAGAGGATCTCAGGCAGGCTGCCGTCTCCAA
TAAGACAACAGCCAGGGTGCAAGTAAGGTATCCCAACACTAAATTAAAGGATGGGAGGAACAGT
TTTATTGGACACCAGCTGGGCGGGGTAGTGGAAGTGCCAAACAGCAAAGACCAGCGGGTCAAGT
CAGCCAGAGCCATTCAAATCACCTACTACCTCCAGACCTATGGTTCTGCCACTCAAGACCTCAT
AGGGGAGAAGTGGGAGAATGAGTTCTGTCAGCTTATGAGGAAGCTCCAGGATGAGCACCAAGAC
CTCCAACTGTACTCTCTGGCATCTTTTAGCCTGTGGAGAGACTTTCATAAGACCAGCATCCTGA
CCAGAAGCAAGGTCCTGGTGAGCCTCGTGCTGATCCTGACCACAGCCACCCTGTCCAGCTCCAT
GAAGGACTGCTTGCGCAGTAAGCCCTTCCTGGGCCTCCTGGGGGTGCTCACGGTATGCATTTCC
ATCGCCACTGCAGCCGGGATCTTCTTCATCACTGATGGGAAGTACAACTCCACCCTGCTGGGAA
TCCCTTTCTTCGCCATGGGTCATGGAACTAAAGGAGTATTTGAGCTTCTGTCTGGATGGCGGAG
AACCAAAGAGAATTTACCCTTCAAAGACAGGGTAGCAGACGCCTATTCTGATGTGATGGTCACC
TACACCATGACCAGTTCCCTGTACTTCATCACGTTTGGTATGGGTGCCAGCCCCTTCACAAACA
TAGAGGCAGTGAAGATCTTCTGTCAGAATATGTGTGTCTCTATTCTATTGAACTACTTCTACAT
TTTCTCTTTCTTTGGCTCTTGCCTGGTCTTTGCTGGACAACTTGAGCAAAATCGATACCACAGC
ATCTTTTGCTGTAAGATCCCTTCTGCAGAATACCTGGACCGCAAGCCTGTGTGGTTCCAGACAG
TAATGAGTGATGGGCACCAACAGACATCCCATCATGAGACAAACCCCTACCAGCACCATTTCAT
CCAGCACTTCCTCCGAGAACATTACAATGAGTGGATTACCAATATCTATGTGAAGCCATTTGTG
GTCATCCTGTATCTCATTTATGCCTCTTTCTCCTTCATGGGGTGCTTGCAGATCAGTGATGGAG
CCAGCATTATCAACCTACTAGCCAGTGACTCACCGAGTGTGTCCTATGCCATGGTTCAGCAAAA
ATATTTCAGCAACTATAGCCCTGTAATAGGATTCTACGTCTATGAACCCCTGGAGTACTGGAAC
AGCAGCGTCCAGGAGGATCTGCAGAGGCTCTGTAGTGGGTTCACTGCAGTGTCCTGGGTGGAAC
AGTACTACCAGTTTCTAAAAGCGAGCAACATCAGTGCCAATAACAAGACCGACTTCATCAGTGT
CCTACAAAGCTCGTTTTTAAAAAAGCCAGAGTTTCAACACTTTCGGAATGATATCATTTTCTCC
AGGGCTGGGGATGAAAACAACATCATCGCTTCTCGCTTATATCTGGTGGCCAGGACTAGCAGGG
ACAAGCAGAAGGAAGTCATCGAAGTTCTGGACAAGTTGAGGCCCCTGTCTCTCTCAAAGAGTAT
CCGGTTCATCGTGTTTAACCCTTCCTTTGTTTTCACAGACCATAATAGTCTGTCAGTCACTGTG
CCTGTTCTGATCGCAGGCTTTGGGGTTCTCCTGGTGTTAGTCCTGACTTTCTTCCTAGTGATCC
ATCCTCTGGGAAATTTCTGGCTAATTCTTAGTGTCACCTCAATTGAGCTGGGCGTTCTGGGCTT
AATGACATTGTGGAATGTCGACATGGATTGCATTTCTATCTTGTGCCTTATCTACACTTTAAAT
TTTGCCATTGACCACTGTGCACCACTGCTTTACACATTTGTACTAGCGACTGAGCACACCAGAA
CACAATGTATAAAAAGCTCCCTGCAAGAGCATGGGACAGCCATTTTGCAAAACATTACTTCTTT
TCTTATTGGGTTGGTCCCCCTCCTCTTTGTGCCTTCAAACCTGACCTTCACACTGTTCAAATGC
TTGCTGCTGACCGGGGGTTGCACGCTTCTGCACTGTTTTGTTATCTTACCTGTGTTCCTAACCT
TTTTTCCTCCTTCCAAAAAGCACCACAAGAAAAAGAAACGTGCCAAACGAAAGGAGAGAGAGGA
AATTGAATGCATAGAAATCCAAGAGAACCCAGACCATGTCACCACAGTCTGAGGGTGGAGACTT
TTTCTTTTCCAGTGTTGCACAATGATGCAGGGCTAGTAAGGCTCAGACCTCAGCTGCTTGGGCT
GGCCAGGGGTAACAAGGCAAGTCAGATCAAGAGTGTATTATTCATGACACATCCAAGGGTCTGC
TTTTTTCAGAGAAAGAGATGATAAAATGAGGTGAAGTCCTATACAACCTTGTGCTCCATGAGAG
ATAATTTTCCAGACATTGATCTTAGAGTTTTTTCTGAGAAATGGATGGATTGGTGTGTTAAAAT
GGAAGGCTAAAATATCTAAAGATTCTTAGAAGAAATGGAGAAGGGAGTAAGTGGTCTCCAGATA
GGGGGTAAGACAGAGAAAATGTCTAATTTGTCAAGTCACTTCATGTTTGCTTTTTGAACAGGTC
AAGCAAAGGAAACTTATGCACATGGGAAGTACATATTTAATCCTGGCTAAACCAAAGGACTGGA
CCACCCAATCCACTTTGTGTGTACATATAAGTATACATCTACATGTACTTATATTTGTCTTTAG
TGTGCATTGGTGTTTTGGTGAAAGAAAGTGTCCATTTTCAGGTAGGCTGGCCTCTCTCTAAAAG
TCAAATCAGCTTTAGCCAAATATATAAGCTCATTAGAGAAGATGCAAAATATCTAATTGGCCAC
TTGAAATCAACTCAACTGTCTAGATAACAAGATTATTATGAACTGTTTGATAACAAAATAAACA
GAAATTTGAATCCATTAAATTCTACATATCATGTTGTTGGTCACTGAGATCCTACCTTTTGAGA
TGACTTCACAAAAAAAAAAAAAACCCAAAAGGTATTTGAGTTAATTAGCATGTGAACAAATGTT
TAAAATCTAAAATAGTTGAGATAGCTTGTCATTAGCCTTTAACATTTCTGTGCATTTACATGGA
AGGCCAGCATGGCTGCTTTTGGATACCTCACTCACCTGAAAATGAGTACTTTAAGCACATTATT
TTGGCGTACATCTGTAAGGATACACAGTGTATGTGAGAGATGAAAAGAAATAATGAGACACCCT
ATCATAGTTAAGCATTCTTATGTTAGATGGTGAAAATACTATGTCGCATATAACAGTTAACACA
GGAAAAAGAAAATATCTGGGGAACTTAGTGAGTAAAATGGGTCATCTACCATTCACCATTTCAG
CATCAAACAGTCCATAGTATAAGAAAAACTTGCAAACTCTATAGATTCTAGTGTGTTCCTTGGA
ATACGTTTGGAAGCATTAACCCAGACCATGGTCACAATGATGGTGGTCACCATAACCCCTACAG
TGTCATTGTGTTGCTTGTTGGAGTACCGTTGTCTTCATTAACTAGAAAGTAAACTCCTATGGCA
AGCACAGCTATCTACAGGTGCCATATTAACTGTGTGTCATTGTGCCTGGACTCTACATTTAAAA
AAACAAGTACCGAGGTAAATGTTTCCATTGAGTTGGTGTTTAAAACTGTACCCCAGGCAGGTAC
CCAATCTGCTGGGTACTTACAAGGACTAAGGCTGCTATTCATGTTGGAGAACATTGCTAGAAAA
TTCCTTTTCCAGGCCAAATAGAGAACCTAAGGAACAATTTATTTCTGGGTAGAATAAAACAAAT
GCCTAATGATTACACATCCTGCTAACAAGTTCTTTTTCCTGAGGAAAATGTATAATCCCCACCA
ATTTGGGTTGTATAATTTAAAGGCATTAGCAATACTAATGCTTTAAAAGGCAAAGTACAACTAG
AACTTTTAGAAATTTCCATTCCTGTTTCAGTTTTAGGAAATGATATTGATAGATAACAATGCTC
TTCTAAATGATGCAAATTTTTAAATAGACATCATTTAAATAAAACTTTATTGAAATGGCTTTTG
TTCTATTCTACCTTAAAGCCACTGTGTTTCAATGTCTCCCCTGATGTGGGTACAATAACTATAG
AATTAAGGAGAGACCATAACTTGCCATAACCACATTTGGTGTTTTCACTGTATCTGTAAAGTCA
TGTGACAGGTAATGCCAGCCTTTCATCTCAAGAACTTCTGTGCTAGGGAGAACAGATGTTTGGA
CAGTTGGCCTCCGGGCCATGAGCTAATAGTTGAAGTTGAAGTTTCTGAGCAGATTTTGCAGTTG
GAGAACAGAATTCCTCTTTCAAAGCTACTCATCACTTATGAAGATTGCTACCACTCACACCTGT
TTATAAAGACAGCCACTAAGAAGCTGAGGATTCCATGTCGCTCTGTGTTCAGTGAAACTCCATC
ACTTCACCTATTTTTGATTTAAAGATAACTTACTTGAGATTTACAGTTACCCTAAACCATTTCA
GATCCAAAAAAATAAACAACAACAACAAGATTGACAAGCTAACTGGCAAGCTTGCAAGTCGCCA
AATACATGGCAGTACCACTGCATATTCTGCCAAAGCACTGATTTCGATGTCGCCCAAAGCACTT
GGGTGGGGAAAGACTTGTTTATGTATTAGGTATTGTCGTCAAGGATCAGACTTGTAGGACAAAC
AGGAATTTCTCATTGTCCGACTGTCTAGAGGGGTGCATTTTAGAAGGGATGCTATCTTCTCCAG
AACACGTGATTCTCTCTAAGGATGTGTAGCAATAATTAACTGAAATGAAATTTCATGCTCTGGA
AGAGTTAATAGAATGCCCAAAATGCCTTGTCTTGGTCTTAGGAAATAATATAAGCCCAAAAGGA
TCTCCCCAAGCATCACGCAAACCTTCCAACCTCACTTTGAAGCAGACATCTCCAAGATTTCCTT
CACTGAGTACCAACTACTAAAATATGAGATCATGATTTGCAGGAAACCCTCCAAGCTCAGCCTT
TTCTGTTTGTGCATTCCTCTTTCTAGTATGTCAGGTTTTTACTTGCTTTGTCCATTGGGAAGTA
GCAATGGCATTCAAGTAGGACTTTACTATCAAACAGAGGGCCATTCGAACCCTAGAAGAAATCA
GTGGGGGAATCTTTTAGAATTGCGGAGTATTTTATTTACTTATTGTAATGTATTTTCCCTTGAA
ATGGGAGATTTTTAAAAACTTGTGAACCCCAGACCTTTTCTTGTTTAAACTGGACTGTGTTCCC
CATCAGAATGTGAAACATTCCTTCTGTTTTATGTTCCATTTTCCTCAATGAGGAACTCACGTAA
ATTACCAGCCAAGATTTGTCTAAAAGTTCCATGGGCTAACCTACATCATGTGGAAGTCTGTTGA
AAGAATAGAGATGTACATGTTTTCCGATGGGGTCTTGCAATGACTGTGAACCTCTTTGAAGGCT
GTGCACGAGAACCCTATGACAGAGCTATTCTGAACTAAGTTTGTATCACATGAAAGTCTTTCTT
CTAATTGATTTCTATCCATTTCCACAGGAAAAATAATTTATGTTTCATCTTGTATGGTGAAAGG
AAGAAGTGTGATCCATGTAGCTCCTACGATGCTATAATAGCCATTCTTGTATGTCGAACTTGAG
TGTAAGAGCTATGTCCTCCACTCTGTAATTATCCATTTGCACTTTACCATAACAAGCTAATCCT
TCTAGACTTGTGATTCTAGCTGGGGATTAACTATTGCCATTCAGAATTGTGCGTATTTTTATAT
GTTGACTGTAAATATTGTCATTACAGTCAAATATTTTTATAATCAAATATTTATAAATGCATGG
CACAGTGCACGCATGATTACTAGTATGTAGATTATTAAAGACACTATTTTCAGGGTTATTACAC
TTTTTATTAAAATTCTCATATCCTCTATCATGAATGCCTCATGGGGTTTTAGTTGCAAAGACCT
AAAGTCCATAAAAAGAACTTCATGCTGAGGGAAGCAATCAGAAAATTGCTTTCTCACAGTGTCA
ACAACAGCCATCTACTCTAAGATGACTATTGGGAAAGCGCAGGGGCTAAGCCAGGTCTCTGGGT
AAAGCACCAGG

hide sequence

Protein Sequences


Protein RefSeqs	XP_008765136	(Get FASTA)	NCBI Sequence Viewer
	XP_008765138	(Get FASTA)	NCBI Sequence Viewer
	XP_017452249	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000016940
	ENSRNOP00000016940.7
	ENSRNOP00000094067
	ENSRNOP00000094067.2

RefSeq Acc Id:	XP_008765136 ⟸ XM_008766914
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6AYQ0 (UniProtKB/TrEMBL)
- Sequence:	show sequence MRRPGAPASWIWWRMLRQVLRRGLQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRFQTE SDLERLVAPSHSLAKIERSLASSLFPLDQSKSQLYSDLHTPGRYGRVILLSPPGDNILLQAEGI LQTHRAVMEMKVNHKGYNYTFSHLCVLRNQDKKCVLDDIISVLEDLRQAAVSNKTTARVQVRYP NTKLKDGRNSFIGHQLGGVVEVPNSKDQRVKSARAIQITYYLQTYGSATQDLIGEKWENEFCQL MRKLQDEHQDLQLYSLASFSLWRDFHKTSILTRSKVLVSLVLILTTATLSSSMKDCLRSKPFLG LLGVLTVCISIATAAGIFFITDGKYNSTLLGIPFFAMGHGTKGVFELLSGWRRTKENLPFKDRV ADAYSDVMVTYTMTSSLYFITFGMGASPFTNIEAVKIFCQNMCVSILLNYFYIFSFFGSCLVFA GQLEQNRYHSIFCCKIPSAEYLDRKPVWFQTVMSDGHQQTSHHETNPYQHHFIQHFLREHYNEW ITNIYVKPFVVILYLIYASFSFMGCLQISDGASIINLLASDSPSVSYAMVQQKYFSNYSPVIGF YVYEPLEYWNSSVQEDLQRLCSGFTAVSWVEQYYQFLKASNISANNKTDFISVLQSSFLKKPEF QHFRNDIIFSRAGDENNIIASRLYLVARTSRDKQKEVIEVLDKLRPLSLSKSIRFIVFNPSFVF TDHNSLSVTVPVLIAGFGVLLVLVLTFFLVIHPLGNFWLILSVTSIELGVLGLMTLWNVDMDCI SILCLIYTLNFAIDHCAPLLYTFVLATEHTRTQCIKSSLQEHGTAILQNITSFLIGLVPLLFVP SNLTFTLFKCLLLTGGCTLLHCFVILPVFLTFFPPSKKHHKKKKRAKRKEREEIECIEIQENPD HVTTV hide sequence

RefSeq Acc Id:	XP_008765138 ⟸ XM_008766916
- Peptide Label:	isoform X3
- UniProtKB:	D3ZRK8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCFLRRPGAPASWIWWRMLRQVLRRGLQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRF QTESDLERLVAPSHSLAKIERSLASSLFPLDQSKSQLYSDLHTPGRYGRVILLSPPGDNILLQA EGILQTHRAVMEMKDGRNSFIGHQLGGVVEVPNSKDQRVKSARAIQITYYLQTYGSATQDLIGE KWENEFCQLMRKLQDEHQDLQLYSLASFSLWRDFHKTSILTRSKVLVSLVLILTTATLSSSMKD CLRSKPFLGLLGVLTVCISIATAAGIFFITDGKYNSTLLGIPFFAMGHGTKGVFELLSGWRRTK ENLPFKDRVADAYSDVMVTYTMTSSLYFITFGMGASPFTNIEAVKIFCQNMCVSILLNYFYIFS FFGSCLVFAGQLEQNRYHSIFCCKIPSAEYLDRKPVWFQTVMSDGHQQTSHHETNPYQHHFIQH FLREHYNEWITNIYVKPFVVILYLIYASFSFMGCLQISDGASIINLLASDSPSVSYAMVQQKYF SNYSPVIGFYVYEPLEYWNSSVQEDLQRLCSGFTAVSWVEQYYQFLKASNISANNKTDFISVLQ SSFLKKPEFQHFRNDIIFSRAGDENNIIASRLYLVARTSRDKQKEVIEVLDKLRPLSLSKSIRF IVFNPSFVFTDHNSLSVTVPVLIAGFGVLLVLVLTFFLVIHPLGNFWLILSVTSIELGVLGLMT LWNVDMDCISILCLIYTLNFAIDHCAPLLYTFVLATEHTRTQCIKSSLQEHGTAILQNITSFLI GLVPLLFVPSNLTFTLFKCLLLTGGCTLLHCFVILPVFLTFFPPSKKHHKKKKRAKRKEREEIE CIEIQENPDHVTTV hide sequence

RefSeq Acc Id:	XP_017452249 ⟸ XM_017596760
- Peptide Label:	isoform X1
- UniProtKB:	D3ZRK8 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCFLRRPGAPASWIWWRMLRQVLRRGLQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRF QTESDLERLVAPSHSLAKIERSLASSLFPLDQSKSQLYSDLHTPGRYGRVILLSPPGDNILLQA EGILQTHRAVMEMKVNHKGYNYTFSHLCVLRNQDKKCVLDDIISVLEDLRQAAVSNKTTARVQV RYPNTKLKDGRNSFIGHQLGGVVEVPNSKDQRVKSARAIQITYYLQTYGSATQDLIGEKWENEF CQLMRKLQDEHQDLQLYSLASFSLWRDFHKTSILTRSKVLVSLVLILTTATLSSSMKDCLRSKP FLGLLGVLTVCISIATAAGIFFITDGKYNSTLLGIPFFAMGHGTKGVFELLSGWRRTKENLPFK DRVADAYSDVMVTYTMTSSLYFITFGMGASPFTNIEAVKIFCQNMCVSILLNYFYIFSFFGSCL VFAGQLEQNRYHSIFCCKIPSAEYLDRKPVWFQTVMSDGHQQTSHHETNPYQHHFIQHFLREHY NEWITNIYVKPFVVILYLIYASFSFMGCLQISDGASIINLLASDSPSVSYAMVQQKYFSNYSPV IGFYVYEPLEYWNSSVQEDLQRLCSGFTAVSWVEQYYQFLKASNISANNKTDFISVLQSSFLKK PEFQHFRNDIIFSRAGDENNIIASRLYLVARTSRDKQKEVIEVLDKLRPLSLSKSIRFIVFNPS FVFTDHNSLSVTVPVLIAGFGVLLVLVLTFFLVIHPLGNFWLILSVTSIELGVLGLMTLWNVDM DCISILCLIYTLNFAIDHCAPLLYTFVLATEHTRTQCIKSSLQEHGTAILQNITSFLIGLVPLL FVPSNLTFTLFKCLLLTGGCTLLHCFVILPVFLTFFPPSKKHHKKKKRAKRKEREEIECIEIQE NPDHVTTV hide sequence

Ensembl Acc Id:

ENSRNOP00000016940 ⟸ ENSRNOT00000016940

Ensembl Acc Id:

ENSRNOP00000094067 ⟸ ENSRNOT00000118927

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D3ZRK8-F1-model_v2	AlphaFold	D3ZRK8	1-904	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1563020	AgrOrtholog
BioCyc Gene	G2FUF-28091	BioCyc
Ensembl Genes	ENSRNOG00000012708	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000016940	ENTREZGENE
	ENSRNOT00000016940.8	UniProtKB/TrEMBL
	ENSRNOT00000118927	ENTREZGENE
	ENSRNOT00000118927.2	UniProtKB/TrEMBL
Gene3D-CATH	Multidrug efflux transporter AcrB transmembrane domain	UniProtKB/TrEMBL
InterPro	Patched	UniProtKB/TrEMBL
	Patched_domain-protein	UniProtKB/TrEMBL
	SSD_5TM	UniProtKB/TrEMBL
KEGG Report	rno:301271	UniProtKB/TrEMBL
NCBI Gene	301271	ENTREZGENE
PANTHER	PATCHED DOMAIN-CONTAINING PROTEIN 4	UniProtKB/TrEMBL
	PATCHED-RELATED	UniProtKB/TrEMBL
Pfam	Patched	UniProtKB/TrEMBL
PhenoGen	Ptchd4	PhenoGen
PROSITE	SSD	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012708	RatGTEx
Superfamily-SCOP	Multidrug efflux transporter AcrB transmembrane domain	UniProtKB/TrEMBL
UniProt	A0A8I6AYQ0	ENTREZGENE, UniProtKB/TrEMBL
	D3ZRK8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2012-10-12	Ptchd4	patched domain containing 4	RGD1563020	similar to OTTHUMP00000016566	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	RGD1563020	similar to OTTHUMP00000016566	RGD1563020_predicted	similar to OTTHUMP00000016566 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1563020_predicted	similar to OTTHUMP00000016566 (predicted)	LOC301271	similar to OTTHUMP00000016566	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC301271	similar to OTTHUMP00000016566			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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