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Gene: Pcdh11x (protocadherin 11 X-linked) Rattus norvegicus

Analyze

Symbol:

Pcdh11x

Name:

protocadherin 11 X-linked

RGD ID:

1562864

Description:

Predicted to enable cell adhesion molecule binding activity. Predicted to be involved in cell adhesion. Predicted to be located in membrane. Predicted to be active in plasma membrane. Orthologous to several human genes including PCDH11X (protocadherin 11 X-linked); INTERACTS WITH 17alpha-ethynylestradiol; 6-propyl-2-thiouracil; atrazine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC100910387; LOC317204; protocadherin-11 X-linked; protocadherin-11 X-linked-like; RGD1562864; similar to protocadherin X long isoform

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	PCDH11X (protocadherin 11 X-linked)	HGNC	Ensembl, HomoloGene, NCBI, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Pcdh11x (protocadherin 11 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Pcdh11x (protocadherin 11 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	PCDH11X (protocadherin 11 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	LOC608881 (protocadherin-11 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Pcdh11x (protocadherin 11 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	PCDH11X (protocadherin 11 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	PCDH11X (protocadherin 11 X-linked)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	PCDH11Y (protocadherin 11 Y-linked)	HGNC	Ensembl, Inparanoid
Alliance orthologs ³
Homo sapiens (human):	PCDH11Y (protocadherin 11 Y-linked)	Alliance	DIOPT (InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PCDH11X (protocadherin 11 X-linked)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	PCDH11X (protocadherin 11 X-linked)	Alliance	DIOPT (HGNC)
Mus musculus (house mouse):	Pcdh11x (protocadherin 11 X-linked)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	pcdh11 (protocadherin 11)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pcdh11x	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	pcdh11x	Alliance	DIOPT (OMA\|OrthoFinder\|PANTHER)
Drosophila melanogaster (fruit fly):	shg	Alliance	DIOPT (Ensembl Compara\|Hieranoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	90,279,191 - 90,974,671 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	90,279,235 - 90,971,393 (+)	Ensembl				GRCr8
mRatBN7.2	X	86,058,348 - 86,751,078 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	86,058,394 - 86,747,036 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	87,705,523 - 88,388,757 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	91,140,528 - 91,825,510 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	88,705,731 - 89,396,906 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	92,596,355 - 93,341,412 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	X	92,498,277 - 92,796,400 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	X	92,896,945 - 93,234,020 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	109,834,025 - 110,557,620 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	87,196,928 - 87,883,712 (+)	NCBI		Celera
Cytogenetic Map	X	q31	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Alzheimer's disease (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(+)-catechin (ISO)

1,2,4-trichloro-5-(2,5-dichlorophenyl)benzene (ISO)

17alpha-ethynylestradiol (EXP)

2,2',4,4',5,5'-hexachlorobiphenyl (ISO)

2,2',5,5'-tetrachlorobiphenyl (ISO)

2,4,4'-trichlorobiphenyl (ISO)

2,4-dibromophenyl 2,4,5-tribromophenyl ether (ISO)

2-palmitoylglycerol (ISO)

6-propyl-2-thiouracil (EXP)

aflatoxin B1 (ISO)

atrazine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

Cuprizon (EXP)

dimethylarsinic acid (EXP)

dioxygen (ISO)

folic acid (ISO)

maneb (ISO)

N,N-diethyl-m-toluamide (ISO)

N-methyl-4-phenylpyridinium (ISO)

paracetamol (ISO)

paraquat (ISO)

PCB138 (ISO)

potassium dichromate (ISO)

rotenone (EXP)

sodium arsenite (ISO)

triclosan (ISO)

valproic acid (EXP,ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell adhesion (IBA,IEA)

homophilic cell-cell adhesion (IEA)

Cellular Component

membrane (IEA)

plasma membrane (IBA,IEA)

Molecular Function

calcium ion binding (IEA)

cell adhesion molecule binding (IBA)

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:19389623	PMID:21873635	PMID:23376485

Genomics

Comparative Map Data

Pcdh11x
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	X	90,279,191 - 90,974,671 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	X	90,279,235 - 90,971,393 (+)	Ensembl				GRCr8
mRatBN7.2	X	86,058,348 - 86,751,078 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	X	86,058,394 - 86,747,036 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	X	87,705,523 - 88,388,757 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	X	91,140,528 - 91,825,510 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	X	88,705,731 - 89,396,906 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	X	92,596,355 - 93,341,412 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_5.0	X	92,498,277 - 92,796,400 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
Rnor_5.0	X	92,896,945 - 93,234,020 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	X	109,834,025 - 110,557,620 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	X	87,196,928 - 87,883,712 (+)	NCBI		Celera
Cytogenetic Map	X	q31	NCBI

PCDH11X
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	X	91,779,375 - 92,623,230 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	X	91,779,261 - 92,623,230 (+)	Ensembl			hg38	GRCh38
GRCh37	X	91,034,374 - 91,878,229 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	X	90,920,960 - 91,764,882 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	X	90,895,803 - 91,684,371	NCBI
Celera	X	91,530,268 - 92,381,817 (+)	NCBI		Celera
Cytogenetic Map	X	q21.31	NCBI
CHM1_1	X	90,926,941 - 91,771,164 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	X	90,231,454 - 91,073,463 (+)	NCBI		T2T-CHM13v2.0

Pcdh11x
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	X	119,199,954 - 119,820,319 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	X	119,199,956 - 119,820,316 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	X	120,290,238 - 120,910,622 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	X	120,290,259 - 120,910,619 (+)	Ensembl			mm10	GRCm38
MGSCv37	X	117,403,936 - 118,020,059 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	X	116,407,271 - 117,023,394 (+)	NCBI		MGSCv36	mm8
Celera	X	106,873,229 - 107,461,642 (+)	NCBI		Celera
Cytogenetic Map	X	E2	NCBI
cM Map	X	49.58	NCBI

Pcdh11x
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955525	2,982,220 - 3,919,729 (+)	NCBI	ChiLan1.0	ChiLan1.0

PCDH11X
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	X	91,362,121 - 92,190,098 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	X	91,365,734 - 92,193,705 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	X	80,975,321 - 81,803,356 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	X	91,143,211 - 91,968,684 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	X	91,199,512 - 91,964,391 (+)	Ensembl			panPan2	panpan1.1

LOC608881
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	X	68,639,555 - 69,007,333 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
Dog10K_Boxer_Tasha	X	59,414,415 - 59,799,473 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	X	69,978,694 - 70,375,807 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
UMICH_Zoey_3.1	X	67,621,623 - 68,005,066 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	X	69,263,069 - 69,650,436 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	X	68,856,888 - 69,246,780 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Pcdh11x
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	X	70,922,879 - 71,609,017 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936649	1,252,782 - 1,934,430 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936649	1,843,290 - 1,893,991 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

PCDH11X
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	X	74,462,811 - 75,191,930 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	X	94,134,448 - 94,472,340 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

PCDH11X
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	X	80,449,558 - 81,235,150 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666065	5,495,873 - 6,131,093 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Variants

Variants in Pcdh11x
2618 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	61
Count of miRNA genes:	53
Interacting mature miRNAs:	56
Transcripts:	ENSRNOT00000045001
Prediction methods:	Microtar, Miranda, Pita, Pita,Targetscan, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
61430	Cia18	Collagen induced arthritis QTL 18	3.1		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	X	80434318	125434318	Rat
738035	Stresp1	Stress response QTL 1	4.96	0.000011	stress-related behavior trait (VT:0010451)	defensive burying - coping	X	45182909	117740458	Rat

Markers in Region

BF394567

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	X	86,150,804 - 86,151,041 (+)	MAPPER	mRatBN7.2
Rnor_6.0	X	92,688,157 - 92,688,393	NCBI	Rnor6.0
Rnor_5.0	X	92,590,268 - 92,590,504	UniSTS	Rnor5.0
RGSC_v3.4	X	109,929,599 - 109,929,835	UniSTS	RGSC3.4
Celera	X	87,288,754 - 87,288,990	UniSTS
RH 3.4 Map	2	1065.49	UniSTS
Cytogenetic Map	X	q32	UniSTS

UniSTS:224381

Rat Assembly	Chr	Position (strand)	Source	JBrowse
Rnor_5.0	X	92,841,308 - 92,841,402	NCBI	Rnor5.0
RGSC_v3.4	X	110,378,104 - 110,378,255	UniSTS	RGSC3.4
Celera	X	87,719,799 - 87,719,950	UniSTS
Cytogenetic Map	X	q32	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

circulatory system	ectoderm	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	sensory system	visual system
15	24	25	19	4	28	6	32	12	12

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001271228	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017602048	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099733	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099734	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039099735	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473969	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000021	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000106182 ⟹ ENSRNOP00000093805

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	90,279,235 - 90,970,934 (+)	Ensembl
mRatBN7.2 Ensembl	X	86,058,394 - 86,747,036 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000118982 ⟹ ENSRNOP00000091088

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	90,279,235 - 90,970,934 (+)	Ensembl
mRatBN7.2 Ensembl	X	86,058,394 - 86,747,036 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000120121 ⟹ ENSRNOP00000086624

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	90,279,235 - 90,868,784 (+)	Ensembl
mRatBN7.2 Ensembl	X	86,058,394 - 86,158,028 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000125752 ⟹ ENSRNOP00000099653

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	90,279,235 - 90,702,895 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000128677 ⟹ ENSRNOP00000107413

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	90,279,235 - 90,702,895 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000131535 ⟹ ENSRNOP00000099407

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	90,279,891 - 90,971,393 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000141247 ⟹ ENSRNOP00000099454

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	90,279,235 - 90,971,393 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000145732 ⟹ ENSRNOP00000105891

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	90,279,235 - 90,941,507 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000155782 ⟹ ENSRNOP00000104111

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	90,279,235 - 90,705,076 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000164493 ⟹ ENSRNOP00000111268

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	X	90,279,235 - 90,971,393 (+)	Ensembl

RefSeq Acc Id:

NM_001271228 ⟹ NP_001258157

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	90,279,235 - 90,970,392 (+)	NCBI
mRatBN7.2	X	86,058,394 - 86,746,799 (+)	NCBI
Rnor_6.0	X	92,596,361 - 93,341,412 (+)	NCBI
Rnor_5.0	X	92,896,945 - 93,234,020 (+)	NCBI
Rnor_5.0	X	92,498,277 - 92,796,400 (+)	NCBI
Celera	X	87,196,928 - 87,883,712 (+)	NCBI

Sequence:

show sequence

GCAGTCGACGAACTGTCAGGGCGGGAGTAGCTGTGAGCCGGAGCAGCCAGCAGCGGCCCGCGCA
GCAAAGCGGAAAGCCAGGCTACCACAGTGCAAGGAGTCGCGGAGGCAGAAGCTACTCAGGCGAC
ACAGGCAGCCCTGCTAGCCCGGGCCGCCAGACCAGCCTCACAACCAACCTCCAAGACAAACAGC
TGCTCCGCGGACTGCGAGCTGTGGCGGTAGATCCCGCTACAGCAATCGCAGTCTCTGTGGAGCG
GGCGGAAGCCTTTTTTCTCCTTTTTCGTCCCCCCTCTTCATTCTACTCAAGAGGAGTCTAAACA
GTAGTATATCGTGGGCTGACAAACAGTACCTTTGGTATCGAGACTGGTATGGACTTGTTGTCCG
GGACGTATATATTTGCGGTCCTGTTAGCATGCGTCGTGTTTCAGTCTGGCGCCCAGGAGAAGAA
TTATACAGTCCGAGAAGAAATGCCAGAAAACGTCCTGATAGGCGACTTGTTGAAAGACCTCAAC
TTGTCGCTTATTCCCGACAAGTCCTTAACCACGCCTATGCAATTCAAATTAGTTTACAAAACCG
GGGATGTACCATTGATTCGGATTGAAGAGGGTACTGGCGAGATCTTCACTACTGGCGCACGCAT
TGATCGTGAGAAATTATGTGCTGGAATCGTGTTGGATGCTCGTTGCTTTTACGAAGTGGAGGTT
GCTGTTTTGCCGGATGAAATATTTAGATTGGTTAAGATACGCTTTCTGATAGAAGACATAAATG
ATAATGCACCGTTATTCCCGACAACTGTCATCAACATATCAATTCCAGAAAACTCGGCTATAAA
CTCTCGATATTCTCTTCCGGCAGCCATTGATCCTGACATTGGAATAAATGGAGTCCAAAATTAC
CAACTAATTAAGAGTCAAAATGTTTTCGGTCTTGATGTCGTTGAAACACCAGAAGGAGAAAAGA
TGCCCCAGCTGATCGTTCAAAAGGAATTAGATAGAGAAGAAAAGGATACCTATGTGATGAAAGT
AAAAGTTGAAGATGGTGGCTTTCCTCAAAGATCCAGTACAGCTATTTTGCAAGTAAGTGTTGCT
GATACAAACGACAACCGCCCAATCTTCATAGAGAAGGAAATTGAAGTCAGTATACCAGAAAATG
CTCCTATAGGTTCTTCAGTGACACAACTCCATGCCACAGATGCTGATATAGGTGAAAACGCCAG
AATTCACTTTTATTTCAGCAATCTAGTCTCCAATAACGCTAAGAGACTGTTTCATCTTAACACC
ACTACCGGGCTTATCACTGTCAAAGAACCACTGGATAGGGAAGAATCACCAAGCCACAAGTTAT
TGGTTTTGGCAACTGATGGTGGATCGACACCAGCAAAAGCAATGGTGCTGGTAAATGTTACAGA
TATCAATGATAATGTACCATCAATTGACATAAGATACATCGTCAATCCAACCAATGGCACTGTG
CTCCTTTCAGAGAATGCTCCGCTTAACACTAAAATTGCTCTCATAACTGTGACGGATAAGGATT
CTGAACATAATGGTAGGGTGACATGCTTCACAGATCATGAAGTTCCTTTCAGATTACGTCCAGT
ATTCAGTAATCAGTTTCTCTTGGAGACAGCTGCATTTCTTGACTTTGAGTCCACCAGAGAATAT
GCCATTAAATTACTGGCCGCTGATGCTGGCAAACCTCCTTTGAATCAGTCATCCATGCTCCTGA
TCAAAGTAAAAGATGAAAATGACAATGCTCCGGTTTTCACCCAATCTTTCATAAGCCTTTCCGT
TCCTGAGAATAACTCTCCTGGTGCACAGTTGACAAAAATCAGTGCAACAGATGCAGACAGTGGA
CGCAATGCTGAAATAAACTACCTGCTAGGTTTTGATGCACCACCTGAATTCAACCTGGATCGTC
GTACAGGCATCCTGACTGCAGTGAAGAAACTAGATAGAGAAAAACAGGAAAAGTATTACTTTAC
AGTCCTGGCACAGGACAATGGAATTCCACCCTTAATGTCCAATGCCACTGTGTTCGTGACTGTT
CTTGACCAGAATGATAACAGCCCAATTTTCACTCATAATGAATATAACTTCTATGTTCCTGAAA
ACCTTCCAAAACATGGCACAGTAGGGCTAATAACTGTGACTGATCCTGATTATGGGGAGAATTC
TGCAGTTACTCTCTCTGTCTTAGATGTAAACGATCAATTCACTATTGATCCACAGTCTGGTGTC
ATCAGGCCAAATATTTCATTTGACAGAGAAAAACAAGAATCCTATACTTTCTATGTAAAAGCTG
AGGATGGTGGTAGGGTATCACGTTCTTCAACTGCTAAAGTAACCATAAATGTGGTTGACGTAAA
TGATAACAAACCAATTTTTATTGACCCTCCTTCCAATTACTCCTTTGAATGGGTTCTACCATCC
ACAGATCCTGGCACAGTCATCTTCAAGGTTCTTGCAATTGACAATGATACTGGCATGAATGCAG
AGCTTCGTTACAGCATTGTTGGAGGAAACACAAAAGGACTGTTTATGATTGAACAAATATCAGG
CAACATCACATTGAAGGAGAAGTGCATGGTTTCAGATATTGGTTTACATCGAGTCATAGTCAAG
GCTAAAGATTTAGGACAACCTGATTCTCTCTTCAATGTTGTAAATGTCAATCTCTTTGTAAATG
AGTCTGTGCCCAATACTACCCTGATTTATGAAATGGTGCGCAAAAGCATTGACTCACCTGCAAA
TCAAAATTCTGAAACAACAAGTGCATCCTCACCAACCACCGACTATGTCAAGATCATGGTTGCC
ATTGTTGCTGGCACCATAACTGTTGTCCTAGTTATTTTCATCACTGCTGTAGTAAGATGCCGCC
AATCACCACACCTTAAGGCTTCTCAGAAAAACAAACAGAATTCTGAGTGGGTTACTCCAAACCC
AGAAAACAGACAGATGATCATGATGAAGAAGAAGAAGAAGAAAAAGAAGAAGCATCCCCCCAAG
AACCTGCTGCTTAATTTTGTTAGTATTGAAGAAGCAAAGCCAGATGATGCTGACAATGAGAGAA
ACAGTGTTACACTAGATCTTCCTATTGAGCTGGAGGATCAAACCATGGGCAAATACAACTGGGG
CACTACACCTACTACCTTCAAGCCCGATAGCCCTGATTTGGCTCGACACTACAAATCTGCCTCT
CCCCAGCCTGCATTCCAGATCCAGCCTGAAACACCCCTAAACTCAAAGCACCACATCATTCAGG
AGCTTCCTCTTGATAATACCTTCGTTGGGTGTGATTCCATCTCCAAGTGCTCCTCCAGCAGTTC
TGATCCCTACAGTGTTTCTGAGTGCAGCTATCCAGTGACAACTTTCAAGACTCCTGTGTCTGTG
CATACCAGACCTCCAATGAAGGAAGTCGTACGATCTCACACACCTATGAAAGAGGCAACAACTG
TGGAAATCTGGACTCATCCGCACCCACAGCGGAGATCTGATGGAAAAAAGGCAGGAAAGTCCCA
GAGACGTGTTACATTTCACCTACCAGAAGGCTCTCAGGAAAGCATCAGTGATGGTGGATTGGGA
GACCATGATCCAGGCAGCCTTCCCAGTACATCCCATGCACTGCCACTTGGCTATCCACAGGAAG
AGTATTTTGATCATGCTGCACCAAACAACCGCACTGAAGGGGATGGCAACTCTGATCCTGAATC
TACTTTCATTCCTGGACTAAAGAAAGCTGCAGAAATAACAGTGCAGCCAACTGTGGAAGAAGCC
TCTGACACCTGCACTCAAGAATGCCTCATCCTGGGCCACTCTGACTCCTGCTGGATGCCAGCTT
CGCTGACCAATCCTACTCCTTCACAGATAAAGACTTCTGCTATCTGCCACAGTCCACCCAGGAC
CCATTCATCAGTTCGTCGCTGCAGCCCTCCAGTGACACAGACTGTTGCTATCTGCCACAGTCCT
CCTGTGACCCAGGCTATTGCCCTGTGCCACAGCCCTCCACCAGTACAGGCTACCGTACTCCGTC
ATAGCTCACCACCAGCACAGGCCTCTGCAGTCTGCTACAGCCCAACTCTGGTACAGGCTGTGGT
AATTCACCGCAGTCCTCCTCTGCCACAGGCTGCCACACTCCGTCACACTCAGGCACAACCACCA
ATGGGTTTACAGCAAGGATGGGTGCAGGGTGCAGGAGCAGATGGAACACATCCTATTGATCAGG
GAGTACAGGGTAGTACGAGAGCTCAGTTTTACACCATGGCTGAAAGACTTCATCCAGATGATGA
CTCAATTAAAGTCATTCCTTTGACCACCTTTACTTCAGGTAAACAGGCCAGAGCCTCAAGAGGT
GATTCTCCCATCATGGAGGAACATCCCTTGTAA

hide sequence

RefSeq Acc Id:

XM_039099733 ⟹ XP_038955661

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	90,279,191 - 90,974,671 (+)	NCBI
mRatBN7.2	X	86,058,349 - 86,751,078 (+)	NCBI

RefSeq Acc Id:

XM_039099734 ⟹ XP_038955662

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	90,279,211 - 90,974,671 (+)	NCBI
mRatBN7.2	X	86,058,348 - 86,751,078 (+)	NCBI

RefSeq Acc Id:

XM_039099735 ⟹ XP_038955663

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	X	90,279,210 - 90,974,671 (+)	NCBI
mRatBN7.2	X	86,058,348 - 86,751,078 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001258157	(Get FASTA)	NCBI Sequence Viewer
	XP_038955661	(Get FASTA)	NCBI Sequence Viewer
	XP_038955662	(Get FASTA)	NCBI Sequence Viewer
	XP_038955663	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM07060	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000086624
	ENSRNOP00000086624.2
	ENSRNOP00000091088.2
	ENSRNOP00000093805.2
	ENSRNOP00000099407
	ENSRNOP00000099407.1
	ENSRNOP00000099454
	ENSRNOP00000099454.1
	ENSRNOP00000099653.1
	ENSRNOP00000104111.1
	ENSRNOP00000105891.1
	ENSRNOP00000107413.1
	ENSRNOP00000111268
	ENSRNOP00000111268.1

RefSeq Acc Id:	NP_001258157 ⟸ NM_001271228
- Peptide Label:	precursor
- UniProtKB:	A0A8I6AKA9 (UniProtKB/TrEMBL)
- Sequence:	show sequence MDLLSGTYIFAVLLACVVFQSGAQEKNYTVREEMPENVLIGDLLKDLNLSLIPDKSLTTPMQFK LVYKTGDVPLIRIEEGTGEIFTTGARIDREKLCAGIVLDARCFYEVEVAVLPDEIFRLVKIRFL IEDINDNAPLFPTTVINISIPENSAINSRYSLPAAIDPDIGINGVQNYQLIKSQNVFGLDVVET PEGEKMPQLIVQKELDREEKDTYVMKVKVEDGGFPQRSSTAILQVSVADTNDNRPIFIEKEIEV SIPENAPIGSSVTQLHATDADIGENARIHFYFSNLVSNNAKRLFHLNTTTGLITVKEPLDREES PSHKLLVLATDGGSTPAKAMVLVNVTDINDNVPSIDIRYIVNPTNGTVLLSENAPLNTKIALIT VTDKDSEHNGRVTCFTDHEVPFRLRPVFSNQFLLETAAFLDFESTREYAIKLLAADAGKPPLNQ SSMLLIKVKDENDNAPVFTQSFISLSVPENNSPGAQLTKISATDADSGRNAEINYLLGFDAPPE FNLDRRTGILTAVKKLDREKQEKYYFTVLAQDNGIPPLMSNATVFVTVLDQNDNSPIFTHNEYN FYVPENLPKHGTVGLITVTDPDYGENSAVTLSVLDVNDQFTIDPQSGVIRPNISFDREKQESYT FYVKAEDGGRVSRSSTAKVTINVVDVNDNKPIFIDPPSNYSFEWVLPSTDPGTVIFKVLAIDND TGMNAELRYSIVGGNTKGLFMIEQISGNITLKEKCMVSDIGLHRVIVKAKDLGQPDSLFNVVNV NLFVNESVPNTTLIYEMVRKSIDSPANQNSETTSASSPTTDYVKIMVAIVAGTITVVLVIFITA VVRCRQSPHLKASQKNKQNSEWVTPNPENRQMIMMKKKKKKKKKHPPKNLLLNFVSIEEAKPDD ADNERNSVTLDLPIELEDQTMGKYNWGTTPTTFKPDSPDLARHYKSASPQPAFQIQPETPLNSK HHIIQELPLDNTFVGCDSISKCSSSSSDPYSVSECSYPVTTFKTPVSVHTRPPMKEVVRSHTPM KEATTVEIWTHPHPQRRSDGKKAGKSQRRVTFHLPEGSQESISDGGLGDHDPGSLPSTSHALPL GYPQEEYFDHAAPNNRTEGDGNSDPESTFIPGLKKAAEITVQPTVEEASDTCTQECLILGHSDS CWMPASLTNPTPSQIKTSAICHSPPRTHSSVRRCSPPVTQTVAICHSPPVTQAIALCHSPPPVQ ATVLRHSSPPAQASAVCYSPTLVQAVVIHRSPPLPQAATLRHTQAQPPMGLQQGWVQGAGADGT HPIDQGVQGSTRAQFYTMAERLHPDDDSIKVIPLTTFTSGKQARASRGDSPIMEEHPL hide sequence

RefSeq Acc Id:	XP_038955662 ⟸ XM_039099734
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038955663 ⟸ XM_039099735
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I6AEP1 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038955661 ⟸ XM_039099733
- Peptide Label:	isoform X1

Ensembl Acc Id:

ENSRNOP00000086624 ⟸ ENSRNOT00000120121

Ensembl Acc Id:

ENSRNOP00000091088 ⟸ ENSRNOT00000118982

Ensembl Acc Id:

ENSRNOP00000093805 ⟸ ENSRNOT00000106182

Ensembl Acc Id:

ENSRNOP00000099454 ⟸ ENSRNOT00000141247

Ensembl Acc Id:

ENSRNOP00000099653 ⟸ ENSRNOT00000125752

Ensembl Acc Id:

ENSRNOP00000105891 ⟸ ENSRNOT00000145732

Ensembl Acc Id:

ENSRNOP00000099407 ⟸ ENSRNOT00000131535

Ensembl Acc Id:

ENSRNOP00000107413 ⟸ ENSRNOT00000128677

Ensembl Acc Id:

ENSRNOP00000104111 ⟸ ENSRNOT00000155782

Ensembl Acc Id:

ENSRNOP00000111268 ⟸ ENSRNOT00000164493

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562864	AgrOrtholog
BioCyc Gene	G2FUF-1770	BioCyc
Ensembl Genes	ENSRNOG00000069840	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000106182.2	UniProtKB/TrEMBL
	ENSRNOT00000118982.2	UniProtKB/TrEMBL
	ENSRNOT00000120121	ENTREZGENE
	ENSRNOT00000120121.2	UniProtKB/TrEMBL
	ENSRNOT00000125752.1	UniProtKB/TrEMBL
	ENSRNOT00000128677.1	UniProtKB/TrEMBL
	ENSRNOT00000131535	ENTREZGENE
	ENSRNOT00000131535.1	UniProtKB/TrEMBL
	ENSRNOT00000141247	ENTREZGENE
	ENSRNOT00000141247.1	UniProtKB/TrEMBL
	ENSRNOT00000145732.1	UniProtKB/TrEMBL
	ENSRNOT00000155782.1	UniProtKB/TrEMBL
	ENSRNOT00000164493	ENTREZGENE
	ENSRNOT00000164493.1	UniProtKB/TrEMBL
Gene3D-CATH	Cadherins	UniProtKB/TrEMBL
InterPro	Cadherin-like_dom	UniProtKB/TrEMBL
	Cadherin-like_sf	UniProtKB/TrEMBL
	Cadherin_CS	UniProtKB/TrEMBL
	Cadherin_N	UniProtKB/TrEMBL
	Protocadherin	UniProtKB/TrEMBL
	Protocadherin/Cadherin-CA	UniProtKB/TrEMBL
KEGG Report	rno:317204	UniProtKB/TrEMBL
NCBI Gene	317204	ENTREZGENE
PANTHER	CADHERIN-87A	UniProtKB/TrEMBL
	PROTOCADHERIN-11 X-LINKED	UniProtKB/TrEMBL
Pfam	Cadherin	UniProtKB/TrEMBL
	Cadherin_2	UniProtKB/TrEMBL
	Protocadherin	UniProtKB/TrEMBL
PhenoGen	Pcdh11x	PhenoGen
PRINTS	CADHERIN	UniProtKB/TrEMBL
PROSITE	CADHERIN_1	UniProtKB/TrEMBL
	CADHERIN_2	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000069840	RatGTEx
SMART	SM00112	UniProtKB/TrEMBL
Superfamily-SCOP	SSF49313	UniProtKB/TrEMBL
UniProt	A0A8I6A2J4_RAT	UniProtKB/TrEMBL
	A0A8I6AEP1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AKA9	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0KXL9_RAT	UniProtKB/TrEMBL
	A0ABK0L3Y1_RAT	UniProtKB/TrEMBL
	A0ABK0L546_RAT	UniProtKB/TrEMBL
	A0ABK0L740_RAT	UniProtKB/TrEMBL
	A0ABK0LHH6_RAT	UniProtKB/TrEMBL
	A0ABK0LU33_RAT	UniProtKB/TrEMBL
	A0ABK0M070_RAT	UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2015-07-29	Pcdh11x	protocadherin 11 X-linked	LOC100910387	protocadherin-11 X-linked-like	Data merged from RGD:6499052	737654	PROVISIONAL
2012-07-05	LOC100910387	protocadherin-11 X-linked-like			Symbol and Name status set to provisional	70820	PROVISIONAL
2008-04-30	Pcdh11x	protocadherin 11 X-linked	Pcdh11x_predicted	protocadherin 11 X-linked (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Pcdh11x_predicted	protocadherin 11 X-linked (predicted)	RGD1562864_predicted	similar to protocadherin X long isoform (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-07	RGD1562864_predicted	similar to protocadherin X long isoform (predicted)	LOC317204	similar to protocadherin X long isoform	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC317204	similar to protocadherin X long isoform			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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