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Gene: Sema4c (semaphorin 4C) Rattus norvegicus

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Symbol:

Sema4c

Name:

semaphorin 4C

RGD ID:

1562837

Description:

Predicted to enable chemorepellent activity; neuropilin binding activity; and semaphorin receptor binding activity. Predicted to be involved in several processes, including nervous system development; positive regulation of stress-activated MAPK cascade; and regulation of postsynapse assembly. Predicted to be located in postsynaptic density. Predicted to be active in glutamatergic synapse; postsynaptic density membrane; and synaptic vesicle membrane. Orthologous to human SEMA4C (semaphorin 4C); INTERACTS WITH acetamide; bisphenol A; cefaloridine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC301346; RGD1562837; sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C; semaphorin-4C; similar to Semaphorin 4C precursor (Semaphorin I); similar to Semaphorin 4C precursor (Semaphorin I) (Sema I) (Semaphorin C-like 1) (M-Sema F)

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	SEMA4C (semaphorin 4C)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Sema4c (sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Sema4c (semaphorin 4C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	SEMA4C (semaphorin 4C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	SEMA4C (semaphorin 4C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Sema4c (semaphorin 4C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	SEMA4C (semaphorin 4C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	SEMA4C (semaphorin 4C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Sema4c (semaphorin 4C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Sema4c (semaphorin 4C)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Homo sapiens (human):	SEMA4C (semaphorin 4C)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Sema4c (sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	sema4c (sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	Sema2a	Alliance	DIOPT (Ensembl Compara\|OrthoInspector\|PANTHER\|PhylomeDB)
Caenorhabditis elegans (roundworm):	smp-1	Alliance	DIOPT (Ensembl Compara\|InParanoid\|OMA\|OrthoInspector\|PANTHER\|SonicParanoid)
Xenopus tropicalis (tropical clawed frog):	sema4c	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	46,287,540 - 46,298,041 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	46,287,542 - 46,297,998 (-)	Ensembl				GRCr8
mRatBN7.2	9	38,791,668 - 38,802,171 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	38,791,670 - 38,802,128 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	47,295,194 - 47,305,656 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	52,410,468 - 52,420,923 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	50,692,369 - 50,702,824 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	43,129,413 - 43,140,442 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	43,129,415 - 43,139,870 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	42,783,319 - 42,793,776 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	35,492,647 - 35,503,102 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	36,558,044 - 36,568,492 (-)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

COVID-19 (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

1-chloro-2,4-dinitrobenzene (ISO)

17beta-estradiol (ISO)

2-butoxyethanol (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

acetamide (EXP)

aflatoxin B1 (ISO)

arsane (ISO)

arsenic atom (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

beta-lapachone (ISO)

bisphenol A (EXP,ISO)

butanal (ISO)

carbon nanotube (ISO)

cefaloridine (EXP)

CGP 52608 (ISO)

chlorpyrifos (ISO)

cisplatin (ISO)

cocaine (EXP)

copper atom (EXP)

copper(0) (EXP)

cyclosporin A (ISO)

diazinon (ISO)

Dibutyl phosphate (ISO)

dibutyl phthalate (ISO)

dorsomorphin (ISO)

doxorubicin (ISO)

endosulfan (EXP)

FR900359 (ISO)

gentamycin (EXP)

lipopolysaccharide (ISO)

manganese atom (ISO)

manganese(0) (ISO)

manganese(II) chloride (ISO)

nickel sulfate (ISO)

okadaic acid (ISO)

ozone (ISO)

paracetamol (EXP,ISO)

phenylmercury acetate (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

succimer (ISO)

tetrachloromethane (ISO)

titanium dioxide (ISO)

triclosan (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

axon guidance (IBA)

cell differentiation (IEA)

cell migration in hindbrain (IEA,ISO)

cerebellum development (IEA,ISO)

muscle cell differentiation (IEA,ISO)

negative chemotaxis (IBA)

nervous system development (IEA)

neural crest cell migration (IBA)

neural tube closure (IEA,ISO)

positive regulation of cell migration (IBA)

positive regulation of stress-activated MAPK cascade (IEA,ISO)

regulation of plasma membrane bounded cell projection organization (IEA)

regulation of postsynapse assembly (IEA,ISO)

semaphorin-plexin signaling pathway (IBA,IEA,ISO)

Cellular Component

cytoplasmic vesicle (IEA)

glutamatergic synapse (IEA,ISO)

membrane (IEA)

plasma membrane (IBA)

postsynaptic density (IEA,ISO)

postsynaptic density membrane (IEA,ISO)

synaptic vesicle membrane (IBA,IEA,ISO)

Molecular Function

chemorepellent activity (IBA)

neuropilin binding (IBA)

protein binding (ISO)

semaphorin receptor binding (IBA,IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:11134026	PMID:15811348	PMID:17498836	PMID:19189244	PMID:21122816	PMID:22664934	PMID:37482144

Genomics

Comparative Map Data

Sema4c
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	9	46,287,540 - 46,298,041 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	9	46,287,542 - 46,297,998 (-)	Ensembl				GRCr8
mRatBN7.2	9	38,791,668 - 38,802,171 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	9	38,791,670 - 38,802,128 (-)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	9	47,295,194 - 47,305,656 (-)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	9	52,410,468 - 52,420,923 (-)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	9	50,692,369 - 50,702,824 (-)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	9	43,129,413 - 43,140,442 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	9	43,129,415 - 43,139,870 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	9	42,783,319 - 42,793,776 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	9	35,492,647 - 35,503,102 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	9	36,558,044 - 36,568,492 (-)	NCBI		Celera
Cytogenetic Map	9	q21	NCBI

SEMA4C
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	2	96,859,718 - 96,870,830 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	2	96,859,718 - 96,873,840 (-)	Ensembl			hg38	GRCh38
GRCh37	2	97,525,455 - 97,535,817 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	2	96,889,200 - 96,899,462 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Build 34	2	96,947,352 - 96,957,582	NCBI
Celera	2	91,965,635 - 91,975,934 (-)	NCBI		Celera
Cytogenetic Map	2	q11.2	NCBI
HuRef	2	91,485,571 - 91,495,645 (-)	NCBI		HuRef
CHM1_1	2	97,530,409 - 97,540,671 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	2	97,366,349 - 97,377,098 (-)	NCBI		T2T-CHM13v2.0

Sema4c
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	36,587,720 - 36,599,780 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	36,587,720 - 36,597,430 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	1	36,548,639 - 36,560,699 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	36,548,639 - 36,558,349 (-)	Ensembl			mm10	GRCm38
MGSCv37	1	36,605,487 - 36,615,226 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	1	36,493,186 - 36,504,590 (-)	NCBI		MGSCv36	mm8
Celera	1	36,335,454 - 36,345,188 (-)	NCBI		Celera
Cytogenetic Map	1	B	NCBI
cM Map	1	15.32	NCBI

Sema4c
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955470	4,213,006 - 4,220,169 (-)	Ensembl
ChiLan1.0	NW_004955470	4,213,006 - 4,220,167 (-)	NCBI	ChiLan1.0	ChiLan1.0

SEMA4C
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	12	31,437,516 - 31,448,909 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	2A	31,438,188 - 31,451,673 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	2A	102,443,333 - 102,455,176 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	2A	97,779,357 - 97,788,242 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	2A	97,780,242 - 97,787,341 (-)	Ensembl			panPan2	panpan1.1

SEMA4C
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	10	45,105,701 - 45,116,504 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	10	45,106,666 - 45,115,592 (+)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	10	45,032,228 - 45,043,112 (+)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	10	45,981,562 - 45,992,443 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	10	45,982,132 - 45,992,433 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	10	45,693,071 - 45,703,955 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	10	45,979,501 - 45,990,386 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	10	46,162,896 - 46,173,783 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Sema4c
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024406292	83,541,170 - 83,551,897 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936744	793,898 - 804,642 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936744	794,127 - 804,618 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

SEMA4C
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	3	56,750,760 - 56,760,828 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	3	56,750,745 - 56,760,835 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	3	59,247,355 - 59,256,799 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

SEMA4C
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	14	1,189,547 - 1,199,906 (-)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	14	1,189,495 - 1,199,446 (-)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666041	168,626,646 - 168,637,041 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Sema4c
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624749	2,737,251 - 2,745,979 (-)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624749	2,737,251 - 2,747,540 (-)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Sema4c
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	4	112,772,043 - 112,781,971 (-)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Sema4c
32 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	505
Count of miRNA genes:	266
Interacting mature miRNAs:	326
Transcripts:	ENSRNOT00000021956
Prediction methods:	Microtar, Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
2303170	Bp332	Blood pressure QTL 332	3.73	0.027	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	9	6714888	84474983	Rat
631211	Bw4	Body weight QTL4	5.31		retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	9	5346479	50346479	Rat
7411571	Bw138	Body weight QTL 138	14.3	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	9	40029925	85029925	Rat
2303559	Gluco54	Glucose level QTL 54	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	9	8750492	53750492	Rat
1300180	Bw14	Body weight QTL 14	3.776		body mass (VT:0001259)	body weight (CMO:0000012)	9	31250432	68875676	Rat
8662828	Vetf6	Vascular elastic tissue fragility QTL 6	3.9		artery integrity trait (VT:0010639)	patent ductus arteriosus score (CMO:0002566)	9	44458256	99506504	Rat
61450	Ciaa3	CIA Autoantibody QTL 3	6.5		blood autoantibody amount (VT:0003725)	calculated serum anti-type 2 collagen antibody titer (CMO:0001279)	9	29567664	74567664	Rat
1598834	Memor11	Memory QTL 11	2.5		exploratory behavior trait (VT:0010471)	average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)	9	44458256	85262605	Rat
70186	Niddm26	Non-insulin dependent diabetes mellitus QTL 26	3.87		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	9	29567664	83835942	Rat
70218	Cm28	Cardiac mass QTL 28	8.3	0.0001	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	9	41720295	86720295	Rat
1641911	Alcrsp13	Alcohol response QTL 13			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	6214995	51214995	Rat
1354650	Despr5	Despair related QTL 5	4.01	0.0017	locomotor behavior trait (VT:0001392)	amount of time spent in voluntary immobility (CMO:0001043)	9	8750492	53750492	Rat
2290450	Scl57	Serum cholesterol level QTL 57	4.15		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	9	44458256	121768150	Rat
7207805	Bmd88	Bone mineral density QTL 88	4		femur mineral mass (VT:0010011)	total volumetric bone mineral density (CMO:0001728)	9	31250432	65651574	Rat
61425	Cia15	Collagen induced arthritis QTL 15	4.6		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	9	5346479	50416711	Rat
1581517	Bp284	Blood pressure QTL 284			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	9	39220186	84220186	Rat
1600365	Mcs20	Mammary carcinoma susceptibility QTL 20	3		mammary gland integrity trait (VT:0010552)	mammary tumor growth rate (CMO:0000344)	9	21031430	49025574	Rat
7411656	Foco26	Food consumption QTL 26	9.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	9	40029925	85029925	Rat
1298088	Edpm11	Estrogen-dependent pituitary mass QTL 11	2.5		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	9	6214995	51214995	Rat
1641894	Alcrsp12	Alcohol response QTL 12			response to alcohol trait (VT:0010489)	brain neurotensin receptor 1 density (CMO:0002068)	9	34960590	79960590	Rat
1598823	Memor16	Memory QTL 16	1.9		exploratory behavior trait (VT:0010471)	difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)	9	31456061	57460683	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
16	12	67	162	91	90	59	77	59	6	340	177	11	141	80	92	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001106902	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432621	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432622	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244758	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244759	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006244760	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766995	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008766996	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017596339	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039083222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473965	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000009	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000021956 ⟹ ENSRNOP00000021956

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	46,287,542 - 46,297,998 (-)	Ensembl
mRatBN7.2 Ensembl	9	38,791,670 - 38,802,128 (-)	Ensembl
Rnor_6.0 Ensembl	9	43,129,415 - 43,139,870 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000075882 ⟹ ENSRNOP00000068240

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	9	46,287,542 - 46,295,647 (-)	Ensembl
mRatBN7.2 Ensembl	9	38,791,670 - 38,802,128 (-)	Ensembl
Rnor_6.0 Ensembl	9	43,130,100 - 43,139,246 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000076247

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	9	43,131,041 - 43,131,455 (-)	Ensembl

RefSeq Acc Id:

NM_001106902 ⟹ NP_001100372

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,287,542 - 46,297,998 (-)	NCBI
mRatBN7.2	9	38,791,670 - 38,802,128 (-)	NCBI
Rnor_6.0	9	43,129,415 - 43,139,870 (-)	NCBI
Rnor_5.0	9	42,783,319 - 42,793,776 (-)	NCBI
RGSC_v3.4	9	35,492,647 - 35,503,102 (-)	RGD
Celera	9	36,558,044 - 36,568,492 (-)	RGD

Sequence:

show sequence

CTCCCTCCATCCCCTTGTGGGGCTCGTGCCGCTTGTTAATCGGCCTTACCAAGCCGCACCAGGA
GTCATTTCCTGGGGGTAGCCCAGGAAACTAGCAGCTGCCTGAAGACTTGGGGTCTCCTCTGTCT
GTGAACTGCTCCTGCCAGTCCAAGGGTTAGGGCCCCGAAAAGAGGACAACTTTGGAGCCGAAAG
ACGGACCACTGTGATTAGCCCCCGAGAGAACCTTCAGTTTCTTTTGCTACGCCATCCCCCTTCG
GATACAAGTCCCAAAATGGTCTGCCAGCTTTCGTTCCTGTAACTGGAGCGTGGGGGAGCCCCTC
AACCTTCCAGAGAACCCAGCCCGCCTCAGGGCTCCAAGGCACACTTCAAGAAGACCAGGTGAGT
GCAGTTCCCGGTGGCAACGCCTGGAGTCCCTCCCCGCCCCCTCCACCGGGCGCCGTGGCGTAGA
CCTTGACTCCCAAGCTGCAAGAGTAGCTAAGGGTCCCCAAACCTCAGTGTTGGGCAAGCACCGG
AGCGGGGGGTTGGGGGCGGAGAGCGGCGGCTGCAGCGGAGAAAGAACCGGTGCCCGGCGCGGTG
GAGCGCCGAACCCGAGCTCTGGGGCGCCGAGAGCCGTGTTGAGACCGAGGGGCGGTGGCGCAGG
ACAGCCTTAGCGTGCTGGCGGGCGGGCGCAGTCTGGAGCGGCGCGGGGGCAGGGGAGGAAGGTG
GCTGGAGCCAAACGCGAGGGCGGCGCCCAGGGATTGGAGCTGCACGGAAGAGGGCTGCTGGACT
GAAGTTTAGACTCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTGGCTGCTGGCAGCAGGG
CTGTGGGGCCTGGGCATTGGGGCTGAGATGTGGTGGAACCTTGCGCCTCGGAAGACTGTATCTT
CTGGGGAGCTGGTCACAGTAGTGAGGCGGTTCTCCCAGACAGGCATCCAGGACTTCCTGACCCT
GACCCTGACAGACCGTTCTGGCCTATTATATGTGGGGGCCCGGGAGGCGCTGTTTGCCTTCAGC
GTAGAGGCTCTGGAGCTTCAAGGAGTGATCTCCTGGGAGGCTCCAGCTGAGAAGAAAATTGAGT
GTACCCAGAAAGGGAAGAGCAACCAGACCGAGTGCTTCAACTTCATCCGCTTCCTTCAGCCATA
CAACGCCTCCCATCTGTACGTTTGTGGTACCTATGCCTTCCAGCCCAAGTGCACCTACATCAAC
ATGCTCACGTTCACCTTGGATCGTGCAGAATTTGAGGACGGGAAGGGTAAATGCCCTTACGACC
CAGCTAAGGGCCACACTGGACTCCTTGTGGATGGTGAACTGTACTCGGCTACACTCAATAACTT
CCTGGGCACAGAGCCGGTTATCCTTCGAAACATGGGGCCCCACCACCCCATCAAGACGGAGTAC
CTGGCTTTTTGGTTGAATGAACCTCACTTTGTAGGCTCTGCCTTTGTCCCTGAGAGTGTGGGAA
GCTTCACGGGAGATGATGACAAGATCTACTTCTTCTTCAGTGAGCGGGCAGTGGAGTATGACTG
CTACTCCGAGCAGGTGGTGGCTCGAGTGGCACGAGTCTGTAAGGGTGACATGGGGGGAGCACGG
ACCCTGCAGAAGAAGTGGACAACGTTCCTGAAAGCTCGGTTGGTGTGCTCAGCCCCGGATTGGA
AGGTCTACTTCAACCAGCTGCGGGCAGTGCACACCCTGCTGGGCGCCTCCTGGCACAACACCAC
CTTCTTCGCGGTTTTTCAAGCTCGATGGGGTGATATGGACCTGTCAGCAGTCTGCGAGTACCAG
TTGGAACATATCCAGCAGGTGTTTGAGGGTCCCTTCAAGGAGTACAGCGAGCAAGCCCAGAAGT
GGGCCCGCTATACTGACCCAGTACCCACCCCCCGGCCCGGTTCGTGCATCAACAACTGGCACCG
AGACAATGGCTACACCAGTTCTCTGGAGCTGCCCGACAACACCCTTAACTTCATCAAGAAGCAC
CCGCTGATGGAGGAACAGGTGAAGCCTCGGTTGGGCCGCCCCCTACTTGTAAAGAAGAACACGA
ACTTCACACATGTGGTGGCCGACAGGATCCTAGGACTTGATGGCGCCACCTATACAGTGTTGTT
CATTGGTACAGGAGATGGTTGGCTGCTGAAAGCTGTAAGCCTGGGGCCCTGGATCCACATGGTG
GAGGAGCTGCAGGTGTTTGACCAGGAGCCAGTGGAAAGTCTGGTGCTGTCTCAGAGCAAGAAGG
TGCTGTTTGCTGGCTCCCGTTCTCAACTGGTTCAGCTGTCGCTGGCGGACTGCACGAAGTATCG
CTTCTGTGTAGACTGTGTCCTTGCCAGGGACCCCTACTGTGCCTGGAATGTCAACACCAGCCGC
TGTGTGGCCACCGGTGGTCATTCAGGGTCCCTTCTGGTCCAACACGTGGCAAATTTGGACCCTT
CAAAGATGTGTATCCAGTATGCCATTAAAAAAGCCAGACCTGTTGTTCCCAAAAATATCACAGT
TGTAGCAGGCACAGACCTGGTCCTACCCTGCCACCTCTCCTCCAATTTGGCTCATGCCCTCTGG
ACCTTCAGAGGCCGGGACCTGCCTGCAGAACAACCTGGCTCCTTCCTTTATGACACGGGACTCC
AGGCGCTGGTGGTGATGGCCGCCCAGTCCCGCCACTCTGGGCCCTATCATTGCTATTCAGAGGA
GCAGGGGACAAAACTGGCTGCAGAAAGCTACCTTGTTTCTGTCGTGGCTGGCTCATCGGTGACC
CTGGAGGCACGGGCTCCCTTGGAAAACCTGGGGCTTGTGTGGCTAGCCGTGGTGGCCCTGGGGG
CTGTGTGCCTGGTGTTGCTGCTGTTGGTTCTCTCGCTCCGCCGGCGCCTGCGAGAAGAGCTGGA
AAAGGGTTCCAAGGCAGCCGAGAGGACACTGGTGTACCCCCTGGAACTGCCCAAGGAGCCAGCC
AGTCCCCCCTTCCGTCCTGGCCCAGAAACCGATGAGAAACTTTGGGATCCTGTTGGTTACTACT
ATTCAGATGGCTCTCTCAAGATTGTGCCTGGTCACGCCCGGTGCCAGCCCGGGGGTGGGCCCCC
TTCCCCACCTCCTGGCATCCCCGGCCAGCCCTTGCCTTCTCCAACTCGGCTTCACCTAGGAGGT
GGTCGGAACTCAAATGCCAACGGTTATGTGCGCTTACAGTTGGGTGGAGAGGACCGAGAAGGAT
CTGGGCACCCACTGCCTGAGATTGCTGATGAATTACGACGGAAACTGCAGCAGCGCCAGCCGCT
GCCTGACTCCAACCCAGAGGAGTCTTCAGTATGAGGGAACCCCCCCACCTCAGTGGCGGGGGGT
TTTCATGGGAGGTGCACTCTTAACTTTTGCACAGGCACCAGCTACCTCAGGGACATGGCAGGGG
CAGCATTTGCCCAGCCATGAGGACCTGCTCAGCATGGGCACTGCCACTTGCTATGGCTCACCGG
GGCATCAGCCTCACAGGAGGCACACCCTCCTCTGTGAATTTCACATACGTGGGACCCCAGCAGC
CAAAACTTTGCAAGGAAGAGGTTTCAAGATGTGGGTGTGTTTGTGCATATATGTGTTGGTGTGT
GTATGGAGGGGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GATAACCTTCCTGTCTCTGTCAAGTCTTCCCTTGGCCTGGGGTCCTCCTGGTTGAGCCTTTGCA
GCTATGAAGGGGAAGGGGGTCATAGCACTTTGCTTCTCCTACCCCCAGCTGTCCCGAGCTTGGG
ATGGTGATGTACATACATATGGGGATGGGATGGACAGGGTGTTGTACCCCTTTAGGGGGAGTGC
GGGACTTGGGGGTGGGCCTAGCCCTGCTCCTAGGGCTGTGAATGTTTTCAGGGCGGGGATTGGG
GGGTAGAGATGGAACCTCCTGCTTCAGGGGGAAGGGTGGGCAGGGCCTCCCACTTGCCTGCCAC
CTGGTTCGGTGGTATTTTATATTTGTGCTCTTCTGACAGGGCTGGGAAGGGTTGTTGGGGGGAG
GGAAGGGAGAAGGTGGGCGTGCTGTGGATACTGGCCTATCTTCTCCCAGCTCTGGGAAAAGGGC
TAACAGTGTAACTTATTGTGTCCCCACATATTTATTTGTTGTAAATATTTGAGTATTTTTATAT
TGACGAATAAAATGGAGAAAATGAAACTT

hide sequence

RefSeq Acc Id:

XM_006244758 ⟹ XP_006244820

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,287,540 - 46,295,418 (-)	NCBI
mRatBN7.2	9	38,791,668 - 38,799,549 (-)	NCBI
Rnor_6.0	9	43,129,413 - 43,137,824 (-)	NCBI
Rnor_5.0	9	42,783,319 - 42,793,776 (-)	NCBI

Sequence:

show sequence

GTCTCCTAGAAGGCAGTTGGAGGAACAGGACTGGGCCTGGTCATTTCCACGCCCATCCCACCCA
CTTCCTGCCTCCCTCTTGGGCAACAAAGGGGCCTCGGGAAGCTGGGCCCATTTGGTTCCCGGCT
CCACTCCTACTCCAGCTTTGCTGATGTGGAACCGGGTTTGGGCTCTGCCCGGCTATTGTCTGCG
CTGGGGGAGGGGACAGGCTGGGGCCGGGAACTCTGCACGTTGCCTGCTTCACCAAGTCCCTCAC
TGGAGGTCTTTGCCCAACCGGCTGCCTGCGTCTGCTGAATAAGGGGTCTATCTCCCCGAATTAG
GTCTTGGTGTTGGCTGGAGCCCCACTGGTAGCAACCCGGCTTTTAACGGTTATTATAAAAAAAA
AAAAAAAAACCAAACTCTGAAATCTTTAAGGCCTGAAGGAGCAAAGGAAGGGGGGAGTCCACAC
AACTCCCTGTTGAAGAGAGGGAGTAGGGATGGCTGGAGACCACAGAAGGCTTTTTGATGACTGC
CCACGCCTAGTACTTGCTGACTAAGTTCCTCTCCTTGCTCTTCTGGGAGATCTCCCCAGGGATC
TTGGGGGCAGGGGCCAGTTGCAGGAGCTAGGTCTGCTGCAAAAAAAAGGGAGCAGGGGGAGATC
CAAGGGCTCCGGGGGAGGCTTGTTCCAGTGTGCACCCTGTGCTGCCTGTCTCTTGGTGCGGGCC
CCCTTCCGGTCTGTGATGCTGACCAGTTTCTTTTCCTTCAGCAGGGCTGCTGGACTGAAGTTTA
GACTCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTGGCTGCTGGCAGCAGGGCTGTGGGG
CCTGGGCATTGGGGCTGAGATGTGGTGGAACCTTGCGCCTCGGAAGACTGTATCTTCTGGGGAG
CTGGTCACAGTAGTGAGGCGGTTCTCCCAGACAGGCATCCAGGACTTCCTGACCCTGACCCTGA
CAGACCGTTCTGGCCTATTATATGTGGGGGCCCGGGAGGCGCTGTTTGCCTTCAGCGTAGAGGC
TCTGGAGCTTCAAGGAGTGATCTCCTGGGAGGCTCCAGCTGAGAAGAAAATTGAGTGTACCCAG
AAAGGGAAGAGCAACCAGACCGAGTGCTTCAACTTCATCCGCTTCCTTCAGCCATACAACGCCT
CCCATCTGTACGTTTGTGGTACCTATGCCTTCCAGCCCAAGTGCACCTACATCAACATGCTCAC
GTTCACCTTGGATCGTGCAGAATTTGAGGACGGGAAGGGTAAATGCCCTTACGACCCAGCTAAG
GGCCACACTGGACTCCTTGTGGATGGTGAACTGTACTCGGCTACACTCAATAACTTCCTGGGCA
CAGAGCCGGTTATCCTTCGAAACATGGGGCCCCACCACCCCATCAAGACGGAGTACCTGGCTTT
TTGGTTGAATGAACCTCACTTTGTAGGCTCTGCCTTTGTCCCTGAGAGTGTGGGAAGCTTCACG
GGAGATGATGACAAGATCTACTTCTTCTTCAGTGAGCGGGCAGTGGAGTATGACTGCTACTCCG
AGCAGGTGGTGGCTCGAGTGGCACGAGTCTGTAAGGGTGACATGGGGGGAGCACGGACCCTGCA
GAAGAAGTGGACAACGTTCCTGAAAGCTCGGTTGGTGTGCTCAGCCCCGGATTGGAAGGTCTAC
TTCAACCAGCTGCGGGCAGTGCACACCCTGCTGGGCGCCTCCTGGCACAACACCACCTTCTTCG
CGGTTTTTCAAGCTCGATGGGGTGATATGGACCTGTCAGCAGTCTGCGAGTACCAGTTGGAACA
TATCCAGCAGGTGTTTGAGGGTCCCTTCAAGGAGTACAGCGAGCAAGCCCAGAAGTGGGCCCGC
TATACTGACCCAGTACCCACCCCCCGGCCCGGTTCGTGCATCAACAACTGGCACCGAGACAATG
GCTACACCAGTTCTCTGGAGCTGCCCGACAACACCCTTAACTTCATCAAGAAGCACCCGCTGAT
GGAGGAACAGGTGAAGCCTCGGTTGGGCCGCCCCCTACTTGTAAAGAAGAACACGAACTTCACA
CATGTGGTGGCCGACAGGATCCTAGGACTTGATGGCGCCACCTATACAGTGTTGTTCATTGGTA
CAGGAGATGGTTGGCTGCTGAAAGCTGTAAGCCTGGGGCCCTGGATCCACATGGTGGAGGAGCT
GCAGGTGTTTGACCAGGAGCCAGTGGAAAGTCTGGTGCTGTCTCAGAGCAAGAAGGTGCTGTTT
GCTGGCTCCCGTTCTCAACTGGTTCAGCTGTCGCTGGCGGACTGCACGAAGTATCGCTTCTGTG
TAGACTGTGTCCTTGCCAGGGACCCCTACTGTGCCTGGAATGTCAACACCAGCCGCTGTGTGGC
CACCGGTGGTCATTCAGGGTCCCTTCTGGTCCAACACGTGGCAAATTTGGACCCTTCAAAGATG
TGTATCCAGTATGCCATTAAAAAAGCCAGACCTGTTGTTCCCAAAAATATCACAGTTGTAGCAG
GCACAGACCTGGTCCTACCCTGCCACCTCTCCTCCAATTTGGCTCATGCCCTCTGGACCTTCAG
AGGCCGGGACCTGCCTGCAGAACAACCTGGCTCCTTCCTTTATGACACGGGACTCCAGGCGCTG
GTGGTGATGGCCGCCCAGTCCCGCCACTCTGGGCCCTATCATTGCTATTCAGAGGAGCAGGGGA
CAAAACTGGCTGCAGAAAGCTACCTTGTTTCTGTCGTGGCTGGCTCATCGGTGACCCTGGAGGC
ACGGGCTCCCTTGGAAAACCTGGGGCTTGTGTGGCTAGCCGTGGTGGCCCTGGGGGCTGTGTGC
CTGGTGTTGCTGCTGTTGGTTCTCTCGCTCCGCCGGCGCCTGCGAGAAGAGCTGGAAAAGGGTT
CCAAGGCAGCCGAGAGGACACTGGTGTACCCCCTGGAACTGCCCAAGGAGCCAGCCAGTCCCCC
CTTCCGTCCTGGCCCAGAAACCGATGAGAAACTTTGGGATCCTGTTGGTTACTACTATTCAGAT
GGCTCTCTCAAGATTGTGCCTGGTCACGCCCGGTGCCAGCCCGGGGGTGGGCCCCCTTCCCCAC
CTCCTGGCATCCCCGGCCAGCCCTTGCCTTCTCCAACTCGGCTTCACCTAGGAGGTGGTCGGAA
CTCAAATGCCAACGGTTATGTGCGCTTACAGTTGGGTGGAGAGGACCGAGAAGGATCTGGGCAC
CCACTGCCTGAGATTGCTGATGAATTACGACGGAAACTGCAGCAGCGCCAGCCGCTGCCTGACT
CCAACCCAGAGGAGTCTTCAGTATGAGGGAACCCCCCCACCTCAGTGGCGGGGGGTTTTCATGG
GAGGTGCACTCTTAACTTTTGCACAGGCACCAGCTACCTCAGGGACATGGCAGGGGCAGCATTT
GCCCAGCCATGAGGACCTGCTCAGCATGGGCACTGCCACTTGCTATGGCTCACCGGGGCATCAG
CCTCACAGGAGGCACACCCTCCTCTGTGAATTTCACATACGTGGGACCCCAGCAGCCAAAACTT
TGCAAGGAAGAGGTTTCAAGATGTGGGTGTGTTTGTGCATATATGTGTTGGTGTGTGTATGGAG
GGGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATAACCT
TCCTGTCTCTGTCAAGTCTTCCCTTGGCCTGGGGTCCTCCTGGTTGAGCCTTTGCAGCTATGAA
GGGGAAGGGGGTCATAGCACTTTGCTTCTCCTACCCCCAGCTGTCCCGAGCTTGGGATGGTGAT
GTACATACATATGGGGATGGGATGGACAGGGTGTTGTACCCCTTTAGGGGGAGTGCGGGACTTG
GGGGTGGGCCTAGCCCTGCTCCTAGGGCTGTGAATGTTTTCAGGGCGGGGATTGGGGGGTAGAG
ATGGAACCTCCTGCTTCAGGGGGAAGGGTGGGCAGGGCCTCCCACTTGCCTGCCACCTGGTTCG
GTGGTATTTTATATTTGTGCTCTTCTGACAGGGCTGGGAAGGGTTGTTGGGGGGAGGGAAGGGA
GAAGGTGGGCGTGCTGTGGATACTGGCCTATCTTCTCCCAGCTCTGGGAAAAGGGCTAACAGTG
TAACTTATTGTGTCCCCACATATTTATTTGTTGTAAATATTTGAGTATTTTTATATTGACGAAT
AAAATGGAGAAAATGAAACTTAA

hide sequence

RefSeq Acc Id:

XM_006244759 ⟹ XP_006244821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,287,540 - 46,297,462 (-)	NCBI
mRatBN7.2	9	38,791,668 - 38,801,428 (-)	NCBI
Rnor_6.0	9	43,129,413 - 43,139,478 (-)	NCBI
Rnor_5.0	9	42,783,319 - 42,793,776 (-)	NCBI

Sequence:

show sequence

CGGTGGCAACGCCTGGAGTCCCTCCCCGCCCCCTCCACCGGGCGCCGTGGCGTAGACCTTGACT
CCCAAGCTGCAAGAGTAGCTAAGGGTCCCCAAACCTCAGTGTTGGGCAAGCACCGGAGCGGGTC
GCAGCCCCCTCCTGGGCGGGCCTTTGCGTCCCGCCCCCGGCCACCACTCGACACCCTCCTCGCC
TGACGTCAGGGGGTTGGGGGCGGAGAGCGGCGGCTGCAGCGGAGAAAGAACCGGTGCCCGGCGC
GGTGGAGCGCCGAACCCGAGCTCTGGGGCGCCGAGAGCCGTGTTGAGACCGAGGGGCGGTGGCG
CAGGACAGCCTTAGCGTGCTGGCGGGCGGGCGCAGTCTGGAGCGGCGCGGGGGCAGGGGAGGAA
GGTGGCTGGAGCCAAACGCGAGGGCGGCGCCCAGGGATTGGAGCTGCACGGAAGAGCAGGGCTG
CTGGACTGAAGTTTAGACTCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTGGCTGCTGGC
AGCAGGGCTGTGGGGCCTGGGCATTGGGGCTGAGATGTGGTGGAACCTTGCGCCTCGGAAGACT
GTATCTTCTGGGGAGCTGGTCACAGTAGTGAGGCGGTTCTCCCAGACAGGCATCCAGGACTTCC
TGACCCTGACCCTGACAGACCGTTCTGGCCTATTATATGTGGGGGCCCGGGAGGCGCTGTTTGC
CTTCAGCGTAGAGGCTCTGGAGCTTCAAGGAGTGATCTCCTGGGAGGCTCCAGCTGAGAAGAAA
ATTGAGTGTACCCAGAAAGGGAAGAGCAACCAGACCGAGTGCTTCAACTTCATCCGCTTCCTTC
AGCCATACAACGCCTCCCATCTGTACGTTTGTGGTACCTATGCCTTCCAGCCCAAGTGCACCTA
CATCAACATGCTCACGTTCACCTTGGATCGTGCAGAATTTGAGGACGGGAAGGGTAAATGCCCT
TACGACCCAGCTAAGGGCCACACTGGACTCCTTGTGGATGGTGAACTGTACTCGGCTACACTCA
ATAACTTCCTGGGCACAGAGCCGGTTATCCTTCGAAACATGGGGCCCCACCACCCCATCAAGAC
GGAGTACCTGGCTTTTTGGTTGAATGAACCTCACTTTGTAGGCTCTGCCTTTGTCCCTGAGAGT
GTGGGAAGCTTCACGGGAGATGATGACAAGATCTACTTCTTCTTCAGTGAGCGGGCAGTGGAGT
ATGACTGCTACTCCGAGCAGGTGGTGGCTCGAGTGGCACGAGTCTGTAAGGGTGACATGGGGGG
AGCACGGACCCTGCAGAAGAAGTGGACAACGTTCCTGAAAGCTCGGTTGGTGTGCTCAGCCCCG
GATTGGAAGGTCTACTTCAACCAGCTGCGGGCAGTGCACACCCTGCTGGGCGCCTCCTGGCACA
ACACCACCTTCTTCGCGGTTTTTCAAGCTCGATGGGGTGATATGGACCTGTCAGCAGTCTGCGA
GTACCAGTTGGAACATATCCAGCAGGTGTTTGAGGGTCCCTTCAAGGAGTACAGCGAGCAAGCC
CAGAAGTGGGCCCGCTATACTGACCCAGTACCCACCCCCCGGCCCGGTTCGTGCATCAACAACT
GGCACCGAGACAATGGCTACACCAGTTCTCTGGAGCTGCCCGACAACACCCTTAACTTCATCAA
GAAGCACCCGCTGATGGAGGAACAGGTGAAGCCTCGGTTGGGCCGCCCCCTACTTGTAAAGAAG
AACACGAACTTCACACATGTGGTGGCCGACAGGATCCTAGGACTTGATGGCGCCACCTATACAG
TGTTGTTCATTGGTACAGGAGATGGTTGGCTGCTGAAAGCTGTAAGCCTGGGGCCCTGGATCCA
CATGGTGGAGGAGCTGCAGGTGTTTGACCAGGAGCCAGTGGAAAGTCTGGTGCTGTCTCAGAGC
AAGAAGGTGCTGTTTGCTGGCTCCCGTTCTCAACTGGTTCAGCTGTCGCTGGCGGACTGCACGA
AGTATCGCTTCTGTGTAGACTGTGTCCTTGCCAGGGACCCCTACTGTGCCTGGAATGTCAACAC
CAGCCGCTGTGTGGCCACCGGTGGTCATTCAGGGTCCCTTCTGGTCCAACACGTGGCAAATTTG
GACCCTTCAAAGATGTGTATCCAGTATGCCATTAAAAAAGCCAGACCTGTTGTTCCCAAAAATA
TCACAGTTGTAGCAGGCACAGACCTGGTCCTACCCTGCCACCTCTCCTCCAATTTGGCTCATGC
CCTCTGGACCTTCAGAGGCCGGGACCTGCCTGCAGAACAACCTGGCTCCTTCCTTTATGACACG
GGACTCCAGGCGCTGGTGGTGATGGCCGCCCAGTCCCGCCACTCTGGGCCCTATCATTGCTATT
CAGAGGAGCAGGGGACAAAACTGGCTGCAGAAAGCTACCTTGTTTCTGTCGTGGCTGGCTCATC
GGTGACCCTGGAGGCACGGGCTCCCTTGGAAAACCTGGGGCTTGTGTGGCTAGCCGTGGTGGCC
CTGGGGGCTGTGTGCCTGGTGTTGCTGCTGTTGGTTCTCTCGCTCCGCCGGCGCCTGCGAGAAG
AGCTGGAAAAGGGTTCCAAGGCAGCCGAGAGGACACTGGTGTACCCCCTGGAACTGCCCAAGGA
GCCAGCCAGTCCCCCCTTCCGTCCTGGCCCAGAAACCGATGAGAAACTTTGGGATCCTGTTGGT
TACTACTATTCAGATGGCTCTCTCAAGATTGTGCCTGGTCACGCCCGGTGCCAGCCCGGGGGTG
GGCCCCCTTCCCCACCTCCTGGCATCCCCGGCCAGCCCTTGCCTTCTCCAACTCGGCTTCACCT
AGGAGGTGGTCGGAACTCAAATGCCAACGGTTATGTGCGCTTACAGTTGGGTGGAGAGGACCGA
GAAGGATCTGGGCACCCACTGCCTGAGATTGCTGATGAATTACGACGGAAACTGCAGCAGCGCC
AGCCGCTGCCTGACTCCAACCCAGAGGAGTCTTCAGTATGAGGGAACCCCCCCACCTCAGTGGC
GGGGGGTTTTCATGGGAGGTGCACTCTTAACTTTTGCACAGGCACCAGCTACCTCAGGGACATG
GCAGGGGCAGCATTTGCCCAGCCATGAGGACCTGCTCAGCATGGGCACTGCCACTTGCTATGGC
TCACCGGGGCATCAGCCTCACAGGAGGCACACCCTCCTCTGTGAATTTCACATACGTGGGACCC
CAGCAGCCAAAACTTTGCAAGGAAGAGGTTTCAAGATGTGGGTGTGTTTGTGCATATATGTGTT
GGTGTGTGTATGGAGGGGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGATAACCTTCCTGTCTCTGTCAAGTCTTCCCTTGGCCTGGGGTCCTCCTGGTTGAGC
CTTTGCAGCTATGAAGGGGAAGGGGGTCATAGCACTTTGCTTCTCCTACCCCCAGCTGTCCCGA
GCTTGGGATGGTGATGTACATACATATGGGGATGGGATGGACAGGGTGTTGTACCCCTTTAGGG
GGAGTGCGGGACTTGGGGGTGGGCCTAGCCCTGCTCCTAGGGCTGTGAATGTTTTCAGGGCGGG
GATTGGGGGGTAGAGATGGAACCTCCTGCTTCAGGGGGAAGGGTGGGCAGGGCCTCCCACTTGC
CTGCCACCTGGTTCGGTGGTATTTTATATTTGTGCTCTTCTGACAGGGCTGGGAAGGGTTGTTG
GGGGGAGGGAAGGGAGAAGGTGGGCGTGCTGTGGATACTGGCCTATCTTCTCCCAGCTCTGGGA
AAAGGGCTAACAGTGTAACTTATTGTGTCCCCACATATTTATTTGTTGTAAATATTTGAGTATT
TTTATATTGACGAATAAAATGGAGAAAATGAAACTTAA

hide sequence

RefSeq Acc Id:

XM_006244760 ⟹ XP_006244822

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,287,540 - 46,297,134 (-)	NCBI
mRatBN7.2	9	38,791,668 - 38,799,947 (-)	NCBI
Rnor_6.0	9	43,129,413 - 43,137,824 (-)	NCBI
Rnor_5.0	9	42,783,319 - 42,793,776 (-)	NCBI

Sequence:

show sequence

GTCTCCTAGAAGGCAGTTGGAGGAACAGGACTGGGCCTGGTCATTTCCACGCCCATCCCACCCA
CTTCCTGCCTCCCTCTTGGGCAACAAAGGGGCCTCGGGAAGCTGGGCCCATTTGGTTCCCGGCT
CCACTCCTACTCCAGCTTTGCTGATGTGGAACCGGGTTTGGGCTCTGCCCGGCTATTGTCTGCG
CTGGGGGAGGGGACAGGCTGGGGCCGGGAACTCTGCACGTTGCCTGCTTCACCAAGTCCCTCAC
TGGAGGTCTTTGCCCAACCGGCTGCCTGCGTCTGCTGAATAAGGGGTCTATCTCCCCGAATTAG
GTCTTGGTGTTGGCTGGAGCCCCACTGGTAGCAACCCGGCTTTTAACGGGCTGCTGGACTGAAG
TTTAGACTCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTGGCTGCTGGCAGCAGGGCTGT
GGGGCCTGGGCATTGGGGCTGAGATGTGGTGGAACCTTGCGCCTCGGAAGACTGTATCTTCTGG
GGAGCTGGTCACAGTAGTGAGGCGGTTCTCCCAGACAGGCATCCAGGACTTCCTGACCCTGACC
CTGACAGACCGTTCTGGCCTATTATATGTGGGGGCCCGGGAGGCGCTGTTTGCCTTCAGCGTAG
AGGCTCTGGAGCTTCAAGGAGTGATCTCCTGGGAGGCTCCAGCTGAGAAGAAAATTGAGTGTAC
CCAGAAAGGGAAGAGCAACCAGACCGAGTGCTTCAACTTCATCCGCTTCCTTCAGCCATACAAC
GCCTCCCATCTGTACGTTTGTGGTACCTATGCCTTCCAGCCCAAGTGCACCTACATCAACATGC
TCACGTTCACCTTGGATCGTGCAGAATTTGAGGACGGGAAGGGTAAATGCCCTTACGACCCAGC
TAAGGGCCACACTGGACTCCTTGTGGATGGTGAACTGTACTCGGCTACACTCAATAACTTCCTG
GGCACAGAGCCGGTTATCCTTCGAAACATGGGGCCCCACCACCCCATCAAGACGGAGTACCTGG
CTTTTTGGTTGAATGAACCTCACTTTGTAGGCTCTGCCTTTGTCCCTGAGAGTGTGGGAAGCTT
CACGGGAGATGATGACAAGATCTACTTCTTCTTCAGTGAGCGGGCAGTGGAGTATGACTGCTAC
TCCGAGCAGGTGGTGGCTCGAGTGGCACGAGTCTGTAAGGGTGACATGGGGGGAGCACGGACCC
TGCAGAAGAAGTGGACAACGTTCCTGAAAGCTCGGTTGGTGTGCTCAGCCCCGGATTGGAAGGT
CTACTTCAACCAGCTGCGGGCAGTGCACACCCTGCTGGGCGCCTCCTGGCACAACACCACCTTC
TTCGCGGTTTTTCAAGCTCGATGGGGTGATATGGACCTGTCAGCAGTCTGCGAGTACCAGTTGG
AACATATCCAGCAGGTGTTTGAGGGTCCCTTCAAGGAGTACAGCGAGCAAGCCCAGAAGTGGGC
CCGCTATACTGACCCAGTACCCACCCCCCGGCCCGGTTCGTGCATCAACAACTGGCACCGAGAC
AATGGCTACACCAGTTCTCTGGAGCTGCCCGACAACACCCTTAACTTCATCAAGAAGCACCCGC
TGATGGAGGAACAGGTGAAGCCTCGGTTGGGCCGCCCCCTACTTGTAAAGAAGAACACGAACTT
CACACATGTGGTGGCCGACAGGATCCTAGGACTTGATGGCGCCACCTATACAGTGTTGTTCATT
GGTACAGGAGATGGTTGGCTGCTGAAAGCTGTAAGCCTGGGGCCCTGGATCCACATGGTGGAGG
AGCTGCAGGTGTTTGACCAGGAGCCAGTGGAAAGTCTGGTGCTGTCTCAGAGCAAGAAGGTGCT
GTTTGCTGGCTCCCGTTCTCAACTGGTTCAGCTGTCGCTGGCGGACTGCACGAAGTATCGCTTC
TGTGTAGACTGTGTCCTTGCCAGGGACCCCTACTGTGCCTGGAATGTCAACACCAGCCGCTGTG
TGGCCACCGGTGGTCATTCAGGGTCCCTTCTGGTCCAACACGTGGCAAATTTGGACCCTTCAAA
GATGTGTATCCAGTATGCCATTAAAAAAGCCAGACCTGTTGTTCCCAAAAATATCACAGTTGTA
GCAGGCACAGACCTGGTCCTACCCTGCCACCTCTCCTCCAATTTGGCTCATGCCCTCTGGACCT
TCAGAGGCCGGGACCTGCCTGCAGAACAACCTGGCTCCTTCCTTTATGACACGGGACTCCAGGC
GCTGGTGGTGATGGCCGCCCAGTCCCGCCACTCTGGGCCCTATCATTGCTATTCAGAGGAGCAG
GGGACAAAACTGGCTGCAGAAAGCTACCTTGTTTCTGTCGTGGCTGGCTCATCGGTGACCCTGG
AGGCACGGGCTCCCTTGGAAAACCTGGGGCTTGTGTGGCTAGCCGTGGTGGCCCTGGGGGCTGT
GTGCCTGGTGTTGCTGCTGTTGGTTCTCTCGCTCCGCCGGCGCCTGCGAGAAGAGCTGGAAAAG
GGTTCCAAGGCAGCCGAGAGGACACTGGTGTACCCCCTGGAACTGCCCAAGGAGCCAGCCAGTC
CCCCCTTCCGTCCTGGCCCAGAAACCGATGAGAAACTTTGGGATCCTGTTGGTTACTACTATTC
AGATGGCTCTCTCAAGATTGTGCCTGGTCACGCCCGGTGCCAGCCCGGGGGTGGGCCCCCTTCC
CCACCTCCTGGCATCCCCGGCCAGCCCTTGCCTTCTCCAACTCGGCTTCACCTAGGAGGTGGTC
GGAACTCAAATGCCAACGGTTATGTGCGCTTACAGTTGGGTGGAGAGGACCGAGAAGGATCTGG
GCACCCACTGCCTGAGATTGCTGATGAATTACGACGGAAACTGCAGCAGCGCCAGCCGCTGCCT
GACTCCAACCCAGAGGAGTCTTCAGTATGAGGGAACCCCCCCACCTCAGTGGCGGGGGGTTTTC
ATGGGAGGTGCACTCTTAACTTTTGCACAGGCACCAGCTACCTCAGGGACATGGCAGGGGCAGC
ATTTGCCCAGCCATGAGGACCTGCTCAGCATGGGCACTGCCACTTGCTATGGCTCACCGGGGCA
TCAGCCTCACAGGAGGCACACCCTCCTCTGTGAATTTCACATACGTGGGACCCCAGCAGCCAAA
ACTTTGCAAGGAAGAGGTTTCAAGATGTGGGTGTGTTTGTGCATATATGTGTTGGTGTGTGTAT
GGAGGGGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGATA
ACCTTCCTGTCTCTGTCAAGTCTTCCCTTGGCCTGGGGTCCTCCTGGTTGAGCCTTTGCAGCTA
TGAAGGGGAAGGGGGTCATAGCACTTTGCTTCTCCTACCCCCAGCTGTCCCGAGCTTGGGATGG
TGATGTACATACATATGGGGATGGGATGGACAGGGTGTTGTACCCCTTTAGGGGGAGTGCGGGA
CTTGGGGGTGGGCCTAGCCCTGCTCCTAGGGCTGTGAATGTTTTCAGGGCGGGGATTGGGGGGT
AGAGATGGAACCTCCTGCTTCAGGGGGAAGGGTGGGCAGGGCCTCCCACTTGCCTGCCACCTGG
TTCGGTGGTATTTTATATTTGTGCTCTTCTGACAGGGCTGGGAAGGGTTGTTGGGGGGAGGGAA
GGGAGAAGGTGGGCGTGCTGTGGATACTGGCCTATCTTCTCCCAGCTCTGGGAAAAGGGCTAAC
AGTGTAACTTATTGTGTCCCCACATATTTATTTGTTGTAAATATTTGAGTATTTTTATATTGAC
GAATAAAATGGAGAAAATGAAACTTAA

hide sequence

RefSeq Acc Id:

XM_008766995 ⟹ XP_008765217

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,287,540 - 46,297,461 (-)	NCBI
mRatBN7.2	9	38,791,668 - 38,801,537 (-)	NCBI
Rnor_6.0	9	43,129,413 - 43,139,478 (-)	NCBI

Sequence:

show sequence

CGGTGGCAACGCCTGGAGTCCCTCCCCGCCCCCTCCACCGGGCGCCGTGGCGTAGACCTTGACT
CCCAAGCTGCAAGAGTAGCTAAGGGTCCCCAAACCTCAGTGTTGGGCAAGCACCGGAGCGGGTC
GCAGCCCCCTCCTGGGCGGGCCTTTGCGTCCCGCCCCCGGCCACCACTCGACACCCTCCTCGCC
TGACGTCAGGGGGTTGGGGGCGGAGAGCGGCGGCTGCAGCGGAGAAAGAACCGGTGCCCGGCGC
GGTGGAGCGCCGAACCCGAGCTCTGGGGCGCCGAGAGCCGTGTTGAGACCGAGGGGCGGTGGCG
CAGGACAGCCTTAGCGTGCTGGCGGGCGGGCGCAGTCTGGAGCGGCGCGGGGGCAGGGGAGGAA
GGTGGCTGGAGCCAAACGCGAGGGCGGCGCCCAGGGATTGGAGCTGCACGGAAGAGGGCTGCTG
GACTGAAGTTTAGACTCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTGGCTGCTGGCAGC
AGGGCTGTGGGGCCTGGGCATTGGGGCTGAGATGTGGTGGAACCTTGCGCCTCGGAAGACTGTA
TCTTCTGGGGAGCTGGTCACAGTAGTGAGGCGGTTCTCCCAGACAGGCATCCAGGACTTCCTGA
CCCTGACCCTGACAGACCGTTCTGGCCTATTATATGTGGGGGCCCGGGAGGCGCTGTTTGCCTT
CAGCGTAGAGGCTCTGGAGCTTCAAGGAGTGATCTCCTGGGAGGCTCCAGCTGAGAAGAAAATT
GAGTGTACCCAGAAAGGGAAGAGCAACCAGACCGAGTGCTTCAACTTCATCCGCTTCCTTCAGC
CATACAACGCCTCCCATCTGTACGTTTGTGGTACCTATGCCTTCCAGCCCAAGTGCACCTACAT
CAACATGCTCACGTTCACCTTGGATCGTGCAGAATTTGAGGACGGGAAGGGTAAATGCCCTTAC
GACCCAGCTAAGGGCCACACTGGACTCCTTGTGGATGGTGAACTGTACTCGGCTACACTCAATA
ACTTCCTGGGCACAGAGCCGGTTATCCTTCGAAACATGGGGCCCCACCACCCCATCAAGACGGA
GTACCTGGCTTTTTGGTTGAATGAACCTCACTTTGTAGGCTCTGCCTTTGTCCCTGAGAGTGTG
GGAAGCTTCACGGGAGATGATGACAAGATCTACTTCTTCTTCAGTGAGCGGGCAGTGGAGTATG
ACTGCTACTCCGAGCAGGTGGTGGCTCGAGTGGCACGAGTCTGTAAGGGTGACATGGGGGGAGC
ACGGACCCTGCAGAAGAAGTGGACAACGTTCCTGAAAGCTCGGTTGGTGTGCTCAGCCCCGGAT
TGGAAGGTCTACTTCAACCAGCTGCGGGCAGTGCACACCCTGCTGGGCGCCTCCTGGCACAACA
CCACCTTCTTCGCGGTTTTTCAAGCTCGATGGGGTGATATGGACCTGTCAGCAGTCTGCGAGTA
CCAGTTGGAACATATCCAGCAGGTGTTTGAGGGTCCCTTCAAGGAGTACAGCGAGCAAGCCCAG
AAGTGGGCCCGCTATACTGACCCAGTACCCACCCCCCGGCCCGGTTCGTGCATCAACAACTGGC
ACCGAGACAATGGCTACACCAGTTCTCTGGAGCTGCCCGACAACACCCTTAACTTCATCAAGAA
GCACCCGCTGATGGAGGAACAGGTGAAGCCTCGGTTGGGCCGCCCCCTACTTGTAAAGAAGAAC
ACGAACTTCACACATGTGGTGGCCGACAGGATCCTAGGACTTGATGGCGCCACCTATACAGTGT
TGTTCATTGGTACAGGAGATGGTTGGCTGCTGAAAGCTGTAAGCCTGGGGCCCTGGATCCACAT
GGTGGAGGAGCTGCAGGTGTTTGACCAGGAGCCAGTGGAAAGTCTGGTGCTGTCTCAGAGCAAG
AAGGTGCTGTTTGCTGGCTCCCGTTCTCAACTGGTTCAGCTGTCGCTGGCGGACTGCACGAAGT
ATCGCTTCTGTGTAGACTGTGTCCTTGCCAGGGACCCCTACTGTGCCTGGAATGTCAACACCAG
CCGCTGTGTGGCCACCGGTGGTCATTCAGGGTCCCTTCTGGTCCAACACGTGGCAAATTTGGAC
CCTTCAAAGATGTGTATCCAGTATGCCATTAAAAAAGCCAGACCTGTTGTTCCCAAAAATATCA
CAGTTGTAGCAGGCACAGACCTGGTCCTACCCTGCCACCTCTCCTCCAATTTGGCTCATGCCCT
CTGGACCTTCAGAGGCCGGGACCTGCCTGCAGAACAACCTGGCTCCTTCCTTTATGACACGGGA
CTCCAGGCGCTGGTGGTGATGGCCGCCCAGTCCCGCCACTCTGGGCCCTATCATTGCTATTCAG
AGGAGCAGGGGACAAAACTGGCTGCAGAAAGCTACCTTGTTTCTGTCGTGGCTGGCTCATCGGT
GACCCTGGAGGCACGGGCTCCCTTGGAAAACCTGGGGCTTGTGTGGCTAGCCGTGGTGGCCCTG
GGGGCTGTGTGCCTGGTGTTGCTGCTGTTGGTTCTCTCGCTCCGCCGGCGCCTGCGAGAAGAGC
TGGAAAAGGGTTCCAAGGCAGCCGAGAGGACACTGGTGTACCCCCTGGAACTGCCCAAGGAGCC
AGCCAGTCCCCCCTTCCGTCCTGGCCCAGAAACCGATGAGAAACTTTGGGATCCTGTTGGTTAC
TACTATTCAGATGGCTCTCTCAAGATTGTGCCTGGTCACGCCCGGTGCCAGCCCGGGGGTGGGC
CCCCTTCCCCACCTCCTGGCATCCCCGGCCAGCCCTTGCCTTCTCCAACTCGGCTTCACCTAGG
AGGTGGTCGGAACTCAAATGCCAACGGTTATGTGCGCTTACAGTTGGGTGGAGAGGACCGAGAA
GGATCTGGGCACCCACTGCCTGAGATTGCTGATGAATTACGACGGAAACTGCAGCAGCGCCAGC
CGCTGCCTGACTCCAACCCAGAGGAGTCTTCAGTATGAGGGAACCCCCCCACCTCAGTGGCGGG
GGGTTTTCATGGGAGGTGCACTCTTAACTTTTGCACAGGCACCAGCTACCTCAGGGACATGGCA
GGGGCAGCATTTGCCCAGCCATGAGGACCTGCTCAGCATGGGCACTGCCACTTGCTATGGCTCA
CCGGGGCATCAGCCTCACAGGAGGCACACCCTCCTCTGTGAATTTCACATACGTGGGACCCCAG
CAGCCAAAACTTTGCAAGGAAGAGGTTTCAAGATGTGGGTGTGTTTGTGCATATATGTGTTGGT
GTGTGTATGGAGGGGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGATAACCTTCCTGTCTCTGTCAAGTCTTCCCTTGGCCTGGGGTCCTCCTGGTTGAGCCTT
TGCAGCTATGAAGGGGAAGGGGGTCATAGCACTTTGCTTCTCCTACCCCCAGCTGTCCCGAGCT
TGGGATGGTGATGTACATACATATGGGGATGGGATGGACAGGGTGTTGTACCCCTTTAGGGGGA
GTGCGGGACTTGGGGGTGGGCCTAGCCCTGCTCCTAGGGCTGTGAATGTTTTCAGGGCGGGGAT
TGGGGGGTAGAGATGGAACCTCCTGCTTCAGGGGGAAGGGTGGGCAGGGCCTCCCACTTGCCTG
CCACCTGGTTCGGTGGTATTTTATATTTGTGCTCTTCTGACAGGGCTGGGAAGGGTTGTTGGGG
GGAGGGAAGGGAGAAGGTGGGCGTGCTGTGGATACTGGCCTATCTTCTCCCAGCTCTGGGAAAA
GGGCTAACAGTGTAACTTATTGTGTCCCCACATATTTATTTGTTGTAAATATTTGAGTATTTTT
ATATTGACGAATAAAATGGAGAAAATGAAACTTAA

hide sequence

RefSeq Acc Id:

XM_008766996 ⟹ XP_008765218

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,287,540 - 46,298,041 (-)	NCBI
mRatBN7.2	9	38,791,668 - 38,802,171 (-)	NCBI
Rnor_6.0	9	43,129,413 - 43,140,442 (-)	NCBI

Sequence:

show sequence

CTCCCTGCCCACCCCTGGCCTGCCTCCTATCTCTGAAGCCACAGCTTTGTTTCCTAATGGGAAT
GGAGCTGGGAACCATGGCTCTGGCCAGCGAGGGAGAAGGGGCCCTTCTGTGTTCCAGTAAGGAC
GCAATTGTTACTGAAACCAAACTGGGCTGCCTTTCTCCATTACCCGCATTGCTCTTCTGGTCTC
CACTTCTCAAATGCCAAGTTTTAACCCAGAACAAAAGCTGCTGTCGGACGGATTTATACTCCAG
ATCTGCTTATGCGGTCTGGAGTGCTTTTTCCCCTCCAGGGCTGGTCCCTGGGGGTTCAAAGTTA
CCACAGAAACCTCCAGGCCGCCTTCCCTTCGTCTCTGTCCCCTGATTCGGGCTAAGGGTGGTCT
CTAGGTACCGCCGGGGCAGTTTCAGCGAGGTGTCTCAGTCCACCTGTCTACTAGAGAACTAGCT
GACTTGGAAGGACTTGCCAGCCAGCCAGCACCGCCCAGGAGGCCAAAGCTACAAGTTACTTCAA
GAAGCGCCGGTGGGCGGAGGCTGGCAGTTCTGAAGGTGGTGGTGGTGGTTCTCGGCGTGGCTCC
CTCCATCCCCTTGTGGGGCTCGTGCCGCTTGTTAATCGGCCTTACCAAGCCGCACCAGGAGTCA
TTTCCTGGGGGTAGCCCAGGAAACTAGCAGCTGCCTGAAGACTTGGGGTCTCCTCTGTCTGTGA
ACTGCTCCTGCCAGTCCAAGGGTTAGGGCCCCGAAAAGAGGACAACTTTGGAGCCGAAAGACGG
ACCACTGTGATTAGCCCCCGAGAGAACCTTCAGTTTCTTTTGCTACGCCATCCCCCTTCGGATA
CAAGTCCCAAAATGGTCTGCCAGCTTTCGTTCCTGTAACTGGAGCGTGGGGGAGCCCCTCAACC
TTCCAGAGAACCCAGCCCGCCTCAGGGCTCCAAGGCACACTTCAAGAAGACCAGGGCTGCTGGA
CTGAAGTTTAGACTCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTGGCTGCTGGCAGCAG
GGCTGTGGGGCCTGGGCATTGGGGCTGAGATGTGGTGGAACCTTGCGCCTCGGAAGACTGTATC
TTCTGGGGAGCTGGTCACAGTAGTGAGGCGGTTCTCCCAGACAGGCATCCAGGACTTCCTGACC
CTGACCCTGACAGACCGTTCTGGCCTATTATATGTGGGGGCCCGGGAGGCGCTGTTTGCCTTCA
GCGTAGAGGCTCTGGAGCTTCAAGGAGTGATCTCCTGGGAGGCTCCAGCTGAGAAGAAAATTGA
GTGTACCCAGAAAGGGAAGAGCAACCAGACCGAGTGCTTCAACTTCATCCGCTTCCTTCAGCCA
TACAACGCCTCCCATCTGTACGTTTGTGGTACCTATGCCTTCCAGCCCAAGTGCACCTACATCA
ACATGCTCACGTTCACCTTGGATCGTGCAGAATTTGAGGACGGGAAGGGTAAATGCCCTTACGA
CCCAGCTAAGGGCCACACTGGACTCCTTGTGGATGGTGAACTGTACTCGGCTACACTCAATAAC
TTCCTGGGCACAGAGCCGGTTATCCTTCGAAACATGGGGCCCCACCACCCCATCAAGACGGAGT
ACCTGGCTTTTTGGTTGAATGAACCTCACTTTGTAGGCTCTGCCTTTGTCCCTGAGAGTGTGGG
AAGCTTCACGGGAGATGATGACAAGATCTACTTCTTCTTCAGTGAGCGGGCAGTGGAGTATGAC
TGCTACTCCGAGCAGGTGGTGGCTCGAGTGGCACGAGTCTGTAAGGGTGACATGGGGGGAGCAC
GGACCCTGCAGAAGAAGTGGACAACGTTCCTGAAAGCTCGGTTGGTGTGCTCAGCCCCGGATTG
GAAGGTCTACTTCAACCAGCTGCGGGCAGTGCACACCCTGCTGGGCGCCTCCTGGCACAACACC
ACCTTCTTCGCGGTTTTTCAAGCTCGATGGGGTGATATGGACCTGTCAGCAGTCTGCGAGTACC
AGTTGGAACATATCCAGCAGGTGTTTGAGGGTCCCTTCAAGGAGTACAGCGAGCAAGCCCAGAA
GTGGGCCCGCTATACTGACCCAGTACCCACCCCCCGGCCCGGTTCGTGCATCAACAACTGGCAC
CGAGACAATGGCTACACCAGTTCTCTGGAGCTGCCCGACAACACCCTTAACTTCATCAAGAAGC
ACCCGCTGATGGAGGAACAGGTGAAGCCTCGGTTGGGCCGCCCCCTACTTGTAAAGAAGAACAC
GAACTTCACACATGTGGTGGCCGACAGGATCCTAGGACTTGATGGCGCCACCTATACAGTGTTG
TTCATTGGTACAGGAGATGGTTGGCTGCTGAAAGCTGTAAGCCTGGGGCCCTGGATCCACATGG
TGGAGGAGCTGCAGGTGTTTGACCAGGAGCCAGTGGAAAGTCTGGTGCTGTCTCAGAGCAAGAA
GGTGCTGTTTGCTGGCTCCCGTTCTCAACTGGTTCAGCTGTCGCTGGCGGACTGCACGAAGTAT
CGCTTCTGTGTAGACTGTGTCCTTGCCAGGGACCCCTACTGTGCCTGGAATGTCAACACCAGCC
GCTGTGTGGCCACCGGTGGTCATTCAGGGTCCCTTCTGGTCCAACACGTGGCAAATTTGGACCC
TTCAAAGATGTGTATCCAGTATGCCATTAAAAAAGCCAGACCTGTTGTTCCCAAAAATATCACA
GTTGTAGCAGGCACAGACCTGGTCCTACCCTGCCACCTCTCCTCCAATTTGGCTCATGCCCTCT
GGACCTTCAGAGGCCGGGACCTGCCTGCAGAACAACCTGGCTCCTTCCTTTATGACACGGGACT
CCAGGCGCTGGTGGTGATGGCCGCCCAGTCCCGCCACTCTGGGCCCTATCATTGCTATTCAGAG
GAGCAGGGGACAAAACTGGCTGCAGAAAGCTACCTTGTTTCTGTCGTGGCTGGCTCATCGGTGA
CCCTGGAGGCACGGGCTCCCTTGGAAAACCTGGGGCTTGTGTGGCTAGCCGTGGTGGCCCTGGG
GGCTGTGTGCCTGGTGTTGCTGCTGTTGGTTCTCTCGCTCCGCCGGCGCCTGCGAGAAGAGCTG
GAAAAGGGTTCCAAGGCAGCCGAGAGGACACTGGTGTACCCCCTGGAACTGCCCAAGGAGCCAG
CCAGTCCCCCCTTCCGTCCTGGCCCAGAAACCGATGAGAAACTTTGGGATCCTGTTGGTTACTA
CTATTCAGATGGCTCTCTCAAGATTGTGCCTGGTCACGCCCGGTGCCAGCCCGGGGGTGGGCCC
CCTTCCCCACCTCCTGGCATCCCCGGCCAGCCCTTGCCTTCTCCAACTCGGCTTCACCTAGGAG
GTGGTCGGAACTCAAATGCCAACGGTTATGTGCGCTTACAGTTGGGTGGAGAGGACCGAGAAGG
ATCTGGGCACCCACTGCCTGAGATTGCTGATGAATTACGACGGAAACTGCAGCAGCGCCAGCCG
CTGCCTGACTCCAACCCAGAGGAGTCTTCAGTATGAGGGAACCCCCCCACCTCAGTGGCGGGGG
GTTTTCATGGGAGGTGCACTCTTAACTTTTGCACAGGCACCAGCTACCTCAGGGACATGGCAGG
GGCAGCATTTGCCCAGCCATGAGGACCTGCTCAGCATGGGCACTGCCACTTGCTATGGCTCACC
GGGGCATCAGCCTCACAGGAGGCACACCCTCCTCTGTGAATTTCACATACGTGGGACCCCAGCA
GCCAAAACTTTGCAAGGAAGAGGTTTCAAGATGTGGGTGTGTTTGTGCATATATGTGTTGGTGT
GTGTATGGAGGGGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGATAACCTTCCTGTCTCTGTCAAGTCTTCCCTTGGCCTGGGGTCCTCCTGGTTGAGCCTTTG
CAGCTATGAAGGGGAAGGGGGTCATAGCACTTTGCTTCTCCTACCCCCAGCTGTCCCGAGCTTG
GGATGGTGATGTACATACATATGGGGATGGGATGGACAGGGTGTTGTACCCCTTTAGGGGGAGT
GCGGGACTTGGGGGTGGGCCTAGCCCTGCTCCTAGGGCTGTGAATGTTTTCAGGGCGGGGATTG
GGGGGTAGAGATGGAACCTCCTGCTTCAGGGGGAAGGGTGGGCAGGGCCTCCCACTTGCCTGCC
ACCTGGTTCGGTGGTATTTTATATTTGTGCTCTTCTGACAGGGCTGGGAAGGGTTGTTGGGGGG
AGGGAAGGGAGAAGGTGGGCGTGCTGTGGATACTGGCCTATCTTCTCCCAGCTCTGGGAAAAGG
GCTAACAGTGTAACTTATTGTGTCCCCACATATTTATTTGTTGTAAATATTTGAGTATTTTTAT
ATTGACGAATAAAATGGAGAAAATGAAACTTAA

hide sequence

RefSeq Acc Id:

XM_017596339 ⟹ XP_017451828

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,287,540 - 46,298,041 (-)	NCBI
mRatBN7.2	9	38,791,668 - 38,802,171 (-)	NCBI
Rnor_6.0	9	43,129,413 - 43,140,442 (-)	NCBI

Sequence:

show sequence

CTCCCTGCCCACCCCTGGCCTGCCTCCTATCTCTGAAGCCACAGCTTTGTTTCCTAATGGGAAT
GGAGCTGGGAACCATGGCTCTGGCCAGCGAGGGAGAAGGGGCCCTTCTGTGTTCCAGTAAGGAC
GCAATTGTTACTGAAACCAAACTGGGCTGCCTTTCTCCATTACCCGCATTGCTCTTCTGGTCTC
CACTTCTCAAATGCCAAGTTTTAACCCAGAACAAAAGCTGCTGTCGGACGGATTTATACTCCAG
ATCTGCTTATGCGGTCTGGAGTGCTTTTTCCCCTCCAGGGCTGGTCCCTGGGGGTTCAAAGTTA
CCACAGAAACCTCCAGGCCGCCTTCCCTTCGTCTCTGTCCCCTGATTCGGGCTAAGGGTGGTCT
CTAGGTACCGCCGGGGCAGTTTCAGCGAGGTGTCTCAGTCCACCTGTCTACTAGAGAACTAGCT
GACTTGGAAGGACTTGCCAGCCAGCCAGCACCGCCCAGGAGGCCAAAGCTACAAGTTACTTCAA
GAAGCGCCGGTGGGCGGAGGCTGGCAGTTCTGAAGGTGGTGGTGGTGGTTCTCGGCGTGGCTCC
CTCCATCCCCTTGTGGGGCTCGTGCCGCTTGTTAATCGGCCTTACCAAGCCGCACCAGGAGTCA
TTTCCTGGGGGTAGCCCAGGAAACTAGCAGCTGCCTGAAGACTTGGGGTCTCCTCTGTCTGTGA
ACTGCTCCTGCCAGTCCAAGGGTTAGGGCCCCGAAAAGAGGACAACTTTGGAGCCGAAAGACGG
ACCACTGTGATTAGCCCCCGAGAGAACCTTCAGTTTCTTTTGCTACGCCATCCCCCTTCGGATA
CAAGTCCCAAAATGGTCTGCCAGCTTTCGTTCCTGTAACTGGAGCGTGGGGGAGCCCCTCAACC
TTCCAGAGAACCCAGCCCGCCTCAGGGCTCCAAGGCACACTTCAAGAAGACCAGCAGGGCTGCT
GGACTGAAGTTTAGACTCTGGGTGTCTGCCATGGCCCCACACTGGGCTGTCTGGCTGCTGGCAG
CAGGGCTGTGGGGCCTGGGCATTGGGGCTGAGATGTGGTGGAACCTTGCGCCTCGGAAGACTGT
ATCTTCTGGGGAGCTGGTCACAGTAGTGAGGCGGTTCTCCCAGACAGGCATCCAGGACTTCCTG
ACCCTGACCCTGACAGACCGTTCTGGCCTATTATATGTGGGGGCCCGGGAGGCGCTGTTTGCCT
TCAGCGTAGAGGCTCTGGAGCTTCAAGGAGTGATCTCCTGGGAGGCTCCAGCTGAGAAGAAAAT
TGAGTGTACCCAGAAAGGGAAGAGCAACCAGACCGAGTGCTTCAACTTCATCCGCTTCCTTCAG
CCATACAACGCCTCCCATCTGTACGTTTGTGGTACCTATGCCTTCCAGCCCAAGTGCACCTACA
TCAACATGCTCACGTTCACCTTGGATCGTGCAGAATTTGAGGACGGGAAGGGTAAATGCCCTTA
CGACCCAGCTAAGGGCCACACTGGACTCCTTGTGGATGGTGAACTGTACTCGGCTACACTCAAT
AACTTCCTGGGCACAGAGCCGGTTATCCTTCGAAACATGGGGCCCCACCACCCCATCAAGACGG
AGTACCTGGCTTTTTGGTTGAATGAACCTCACTTTGTAGGCTCTGCCTTTGTCCCTGAGAGTGT
GGGAAGCTTCACGGGAGATGATGACAAGATCTACTTCTTCTTCAGTGAGCGGGCAGTGGAGTAT
GACTGCTACTCCGAGCAGGTGGTGGCTCGAGTGGCACGAGTCTGTAAGGGTGACATGGGGGGAG
CACGGACCCTGCAGAAGAAGTGGACAACGTTCCTGAAAGCTCGGTTGGTGTGCTCAGCCCCGGA
TTGGAAGGTCTACTTCAACCAGCTGCGGGCAGTGCACACCCTGCTGGGCGCCTCCTGGCACAAC
ACCACCTTCTTCGCGGTTTTTCAAGCTCGATGGGGTGATATGGACCTGTCAGCAGTCTGCGAGT
ACCAGTTGGAACATATCCAGCAGGTGTTTGAGGGTCCCTTCAAGGAGTACAGCGAGCAAGCCCA
GAAGTGGGCCCGCTATACTGACCCAGTACCCACCCCCCGGCCCGGTTCGTGCATCAACAACTGG
CACCGAGACAATGGCTACACCAGTTCTCTGGAGCTGCCCGACAACACCCTTAACTTCATCAAGA
AGCACCCGCTGATGGAGGAACAGGTGAAGCCTCGGTTGGGCCGCCCCCTACTTGTAAAGAAGAA
CACGAACTTCACACATGTGGTGGCCGACAGGATCCTAGGACTTGATGGCGCCACCTATACAGTG
TTGTTCATTGGTACAGGAGATGGTTGGCTGCTGAAAGCTGTAAGCCTGGGGCCCTGGATCCACA
TGGTGGAGGAGCTGCAGGTGTTTGACCAGGAGCCAGTGGAAAGTCTGGTGCTGTCTCAGAGCAA
GAAGGTGCTGTTTGCTGGCTCCCGTTCTCAACTGGTTCAGCTGTCGCTGGCGGACTGCACGAAG
TATCGCTTCTGTGTAGACTGTGTCCTTGCCAGGGACCCCTACTGTGCCTGGAATGTCAACACCA
GCCGCTGTGTGGCCACCGGTGGTCATTCAGGGTCCCTTCTGGTCCAACACGTGGCAAATTTGGA
CCCTTCAAAGATGTGTATCCAGTATGCCATTAAAAAAGCCAGACCTGTTGTTCCCAAAAATATC
ACAGTTGTAGCAGGCACAGACCTGGTCCTACCCTGCCACCTCTCCTCCAATTTGGCTCATGCCC
TCTGGACCTTCAGAGGCCGGGACCTGCCTGCAGAACAACCTGGCTCCTTCCTTTATGACACGGG
ACTCCAGGCGCTGGTGGTGATGGCCGCCCAGTCCCGCCACTCTGGGCCCTATCATTGCTATTCA
GAGGAGCAGGGGACAAAACTGGCTGCAGAAAGCTACCTTGTTTCTGTCGTGGCTGGCTCATCGG
TGACCCTGGAGGCACGGGCTCCCTTGGAAAACCTGGGGCTTGTGTGGCTAGCCGTGGTGGCCCT
GGGGGCTGTGTGCCTGGTGTTGCTGCTGTTGGTTCTCTCGCTCCGCCGGCGCCTGCGAGAAGAG
CTGGAAAAGGGTTCCAAGGCAGCCGAGAGGACACTGGTGTACCCCCTGGAACTGCCCAAGGAGC
CAGCCAGTCCCCCCTTCCGTCCTGGCCCAGAAACCGATGAGAAACTTTGGGATCCTGTTGGTTA
CTACTATTCAGATGGCTCTCTCAAGATTGTGCCTGGTCACGCCCGGTGCCAGCCCGGGGGTGGG
CCCCCTTCCCCACCTCCTGGCATCCCCGGCCAGCCCTTGCCTTCTCCAACTCGGCTTCACCTAG
GAGGTGGTCGGAACTCAAATGCCAACGGTTATGTGCGCTTACAGTTGGGTGGAGAGGACCGAGA
AGGATCTGGGCACCCACTGCCTGAGATTGCTGATGAATTACGACGGAAACTGCAGCAGCGCCAG
CCGCTGCCTGACTCCAACCCAGAGGAGTCTTCAGTATGAGGGAACCCCCCCACCTCAGTGGCGG
GGGGTTTTCATGGGAGGTGCACTCTTAACTTTTGCACAGGCACCAGCTACCTCAGGGACATGGC
AGGGGCAGCATTTGCCCAGCCATGAGGACCTGCTCAGCATGGGCACTGCCACTTGCTATGGCTC
ACCGGGGCATCAGCCTCACAGGAGGCACACCCTCCTCTGTGAATTTCACATACGTGGGACCCCA
GCAGCCAAAACTTTGCAAGGAAGAGGTTTCAAGATGTGGGTGTGTTTGTGCATATATGTGTTGG
TGTGTGTATGGAGGGGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGATAACCTTCCTGTCTCTGTCAAGTCTTCCCTTGGCCTGGGGTCCTCCTGGTTGAGCCT
TTGCAGCTATGAAGGGGAAGGGGGTCATAGCACTTTGCTTCTCCTACCCCCAGCTGTCCCGAGC
TTGGGATGGTGATGTACATACATATGGGGATGGGATGGACAGGGTGTTGTACCCCTTTAGGGGG
AGTGCGGGACTTGGGGGTGGGCCTAGCCCTGCTCCTAGGGCTGTGAATGTTTTCAGGGCGGGGA
TTGGGGGGTAGAGATGGAACCTCCTGCTTCAGGGGGAAGGGTGGGCAGGGCCTCCCACTTGCCT
GCCACCTGGTTCGGTGGTATTTTATATTTGTGCTCTTCTGACAGGGCTGGGAAGGGTTGTTGGG
GGGAGGGAAGGGAGAAGGTGGGCGTGCTGTGGATACTGGCCTATCTTCTCCCAGCTCTGGGAAA
AGGGCTAACAGTGTAACTTATTGTGTCCCCACATATTTATTTGTTGTAAATATTTGAGTATTTT
TATATTGACGAATAAAATGGAGAAAATGAAACTTAA

hide sequence

RefSeq Acc Id:

XM_039083220 ⟹ XP_038939148

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,287,540 - 46,297,134 (-)	NCBI
mRatBN7.2	9	38,791,668 - 38,799,947 (-)	NCBI

RefSeq Acc Id:

XM_039083221 ⟹ XP_038939149

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,287,540 - 46,297,134 (-)	NCBI
mRatBN7.2	9	38,791,668 - 38,799,947 (-)	NCBI

RefSeq Acc Id:

XM_039083222 ⟹ XP_038939150

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	9	46,287,540 - 46,293,242 (-)	NCBI
mRatBN7.2	9	38,791,668 - 38,797,388 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001100372	(Get FASTA)	NCBI Sequence Viewer
	NP_001419550	(Get FASTA)	NCBI Sequence Viewer
	NP_001419551	(Get FASTA)	NCBI Sequence Viewer
	XP_006244820	(Get FASTA)	NCBI Sequence Viewer
	XP_006244821	(Get FASTA)	NCBI Sequence Viewer
	XP_006244822	(Get FASTA)	NCBI Sequence Viewer
	XP_008765217	(Get FASTA)	NCBI Sequence Viewer
	XP_008765218	(Get FASTA)	NCBI Sequence Viewer
	XP_017451828	(Get FASTA)	NCBI Sequence Viewer
	XP_038939148	(Get FASTA)	NCBI Sequence Viewer
	XP_038939149	(Get FASTA)	NCBI Sequence Viewer
	XP_038939150	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDL99268	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000021956
	ENSRNOP00000021956.4
	ENSRNOP00000068240
	ENSRNOP00000068240.3

RefSeq Acc Id:	NP_001100372 ⟸ NM_001106902
- Peptide Label:	precursor
- UniProtKB:	D4A9J3 (UniProtKB/TrEMBL), A6INE2 (UniProtKB/TrEMBL), A0A096MJS2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPHWAVWLLAAGLWGLGIGAEMWWNLAPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTDRSGL LYVGAREALFAFSVEALELQGVISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNASHLYVC GTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVIL RNMGPHHPIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVAR VARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLRAVHTLLGASWHNTTFFAVFQAR WGDMDLSAVCEYQLEHIQQVFEGPFKEYSEQAQKWARYTDPVPTPRPGSCINNWHRDNGYTSSL ELPDNTLNFIKKHPLMEEQVKPRLGRPLLVKKNTNFTHVVADRILGLDGATYTVLFIGTGDGWL LKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLA RDPYCAWNVNTSRCVATGGHSGSLLVQHVANLDPSKMCIQYAIKKARPVVPKNITVVAGTDLVL PCHLSSNLAHALWTFRGRDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYHCYSEEQGTKLAAE SYLVSVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGSKAAER TLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPG QPLPSPTRLHLGGGRNSNANGYVRLQLGGEDREGSGHPLPEIADELRRKLQQRQPLPDSNPEES SV hide sequence

RefSeq Acc Id:

XP_006244821 ⟸ XM_006244759

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAPHWAVWLLAAGLWGLGIGAEMWWNLAPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTDRSGL
LYVGAREALFAFSVEALELQGVISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNASHLYVC
GTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVIL
RNMGPHHPIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVAR
VARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLRAVHTLLGASWHNTTFFAVFQAR
WGDMDLSAVCEYQLEHIQQVFEGPFKEYSEQAQKWARYTDPVPTPRPGSCINNWHRDNGYTSSL
ELPDNTLNFIKKHPLMEEQVKPRLGRPLLVKKNTNFTHVVADRILGLDGATYTVLFIGTGDGWL
LKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLA
RDPYCAWNVNTSRCVATGGHSGSLLVQHVANLDPSKMCIQYAIKKARPVVPKNITVVAGTDLVL
PCHLSSNLAHALWTFRGRDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYHCYSEEQGTKLAAE
SYLVSVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGSKAAER
TLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPG
QPLPSPTRLHLGGGRNSNANGYVRLQLGGEDREGSGHPLPEIADELRRKLQQRQPLPDSNPEES
SV

hide sequence

RefSeq Acc Id:	XP_006244822 ⟸ XM_006244760
- Peptide Label:	isoform X2
- UniProtKB:	D4A9J3 (UniProtKB/TrEMBL), A6INE2 (UniProtKB/TrEMBL), A0A096MJS2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPHWAVWLLAAGLWGLGIGAEMWWNLAPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTDRSGL LYVGAREALFAFSVEALELQGVISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNASHLYVC GTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVIL RNMGPHHPIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVAR VARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLRAVHTLLGASWHNTTFFAVFQAR WGDMDLSAVCEYQLEHIQQVFEGPFKEYSEQAQKWARYTDPVPTPRPGSCINNWHRDNGYTSSL ELPDNTLNFIKKHPLMEEQVKPRLGRPLLVKKNTNFTHVVADRILGLDGATYTVLFIGTGDGWL LKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLA RDPYCAWNVNTSRCVATGGHSGSLLVQHVANLDPSKMCIQYAIKKARPVVPKNITVVAGTDLVL PCHLSSNLAHALWTFRGRDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYHCYSEEQGTKLAAE SYLVSVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGSKAAER TLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPG QPLPSPTRLHLGGGRNSNANGYVRLQLGGEDREGSGHPLPEIADELRRKLQQRQPLPDSNPEES SV hide sequence

RefSeq Acc Id:	XP_006244820 ⟸ XM_006244758
- Peptide Label:	isoform X1
- UniProtKB:	A0A096MJS2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MLTSFFSFSRAAGLKFRLWVSAMAPHWAVWLLAAGLWGLGIGAEMWWNLAPRKTVSSGELVTVV RRFSQTGIQDFLTLTLTDRSGLLYVGAREALFAFSVEALELQGVISWEAPAEKKIECTQKGKSN QTECFNFIRFLQPYNASHLYVCGTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGL LVDGELYSATLNNFLGTEPVILRNMGPHHPIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDK IYFFFSERAVEYDCYSEQVVARVARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLR AVHTLLGASWHNTTFFAVFQARWGDMDLSAVCEYQLEHIQQVFEGPFKEYSEQAQKWARYTDPV PTPRPGSCINNWHRDNGYTSSLELPDNTLNFIKKHPLMEEQVKPRLGRPLLVKKNTNFTHVVAD RILGLDGATYTVLFIGTGDGWLLKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRS QLVQLSLADCTKYRFCVDCVLARDPYCAWNVNTSRCVATGGHSGSLLVQHVANLDPSKMCIQYA IKKARPVVPKNITVVAGTDLVLPCHLSSNLAHALWTFRGRDLPAEQPGSFLYDTGLQALVVMAA QSRHSGPYHCYSEEQGTKLAAESYLVSVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLL LVLSLRRRLREELEKGSKAAERTLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKI VPGHARCQPGGGPPSPPPGIPGQPLPSPTRLHLGGGRNSNANGYVRLQLGGEDREGSGHPLPEI ADELRRKLQQRQPLPDSNPEESSV hide sequence

RefSeq Acc Id:	XP_008765218 ⟸ XM_008766996
- Peptide Label:	isoform X2
- UniProtKB:	D4A9J3 (UniProtKB/TrEMBL), A6INE2 (UniProtKB/TrEMBL), A0A096MJS2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPHWAVWLLAAGLWGLGIGAEMWWNLAPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTDRSGL LYVGAREALFAFSVEALELQGVISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNASHLYVC GTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVIL RNMGPHHPIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVAR VARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLRAVHTLLGASWHNTTFFAVFQAR WGDMDLSAVCEYQLEHIQQVFEGPFKEYSEQAQKWARYTDPVPTPRPGSCINNWHRDNGYTSSL ELPDNTLNFIKKHPLMEEQVKPRLGRPLLVKKNTNFTHVVADRILGLDGATYTVLFIGTGDGWL LKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLA RDPYCAWNVNTSRCVATGGHSGSLLVQHVANLDPSKMCIQYAIKKARPVVPKNITVVAGTDLVL PCHLSSNLAHALWTFRGRDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYHCYSEEQGTKLAAE SYLVSVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGSKAAER TLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPG QPLPSPTRLHLGGGRNSNANGYVRLQLGGEDREGSGHPLPEIADELRRKLQQRQPLPDSNPEES SV hide sequence

RefSeq Acc Id:

XP_008765217 ⟸ XM_008766995

- Peptide Label:

isoform X2

- Sequence:

show sequence

MAPHWAVWLLAAGLWGLGIGAEMWWNLAPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTDRSGL
LYVGAREALFAFSVEALELQGVISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNASHLYVC
GTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVIL
RNMGPHHPIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVAR
VARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLRAVHTLLGASWHNTTFFAVFQAR
WGDMDLSAVCEYQLEHIQQVFEGPFKEYSEQAQKWARYTDPVPTPRPGSCINNWHRDNGYTSSL
ELPDNTLNFIKKHPLMEEQVKPRLGRPLLVKKNTNFTHVVADRILGLDGATYTVLFIGTGDGWL
LKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLA
RDPYCAWNVNTSRCVATGGHSGSLLVQHVANLDPSKMCIQYAIKKARPVVPKNITVVAGTDLVL
PCHLSSNLAHALWTFRGRDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYHCYSEEQGTKLAAE
SYLVSVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGSKAAER
TLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPG
QPLPSPTRLHLGGGRNSNANGYVRLQLGGEDREGSGHPLPEIADELRRKLQQRQPLPDSNPEES
SV

hide sequence

RefSeq Acc Id:	XP_017451828 ⟸ XM_017596339
- Peptide Label:	isoform X2
- UniProtKB:	D4A9J3 (UniProtKB/TrEMBL), A6INE2 (UniProtKB/TrEMBL), A0A096MJS2 (UniProtKB/TrEMBL)
- Sequence:	show sequence MAPHWAVWLLAAGLWGLGIGAEMWWNLAPRKTVSSGELVTVVRRFSQTGIQDFLTLTLTDRSGL LYVGAREALFAFSVEALELQGVISWEAPAEKKIECTQKGKSNQTECFNFIRFLQPYNASHLYVC GTYAFQPKCTYINMLTFTLDRAEFEDGKGKCPYDPAKGHTGLLVDGELYSATLNNFLGTEPVIL RNMGPHHPIKTEYLAFWLNEPHFVGSAFVPESVGSFTGDDDKIYFFFSERAVEYDCYSEQVVAR VARVCKGDMGGARTLQKKWTTFLKARLVCSAPDWKVYFNQLRAVHTLLGASWHNTTFFAVFQAR WGDMDLSAVCEYQLEHIQQVFEGPFKEYSEQAQKWARYTDPVPTPRPGSCINNWHRDNGYTSSL ELPDNTLNFIKKHPLMEEQVKPRLGRPLLVKKNTNFTHVVADRILGLDGATYTVLFIGTGDGWL LKAVSLGPWIHMVEELQVFDQEPVESLVLSQSKKVLFAGSRSQLVQLSLADCTKYRFCVDCVLA RDPYCAWNVNTSRCVATGGHSGSLLVQHVANLDPSKMCIQYAIKKARPVVPKNITVVAGTDLVL PCHLSSNLAHALWTFRGRDLPAEQPGSFLYDTGLQALVVMAAQSRHSGPYHCYSEEQGTKLAAE SYLVSVVAGSSVTLEARAPLENLGLVWLAVVALGAVCLVLLLLVLSLRRRLREELEKGSKAAER TLVYPLELPKEPASPPFRPGPETDEKLWDPVGYYYSDGSLKIVPGHARCQPGGGPPSPPPGIPG QPLPSPTRLHLGGGRNSNANGYVRLQLGGEDREGSGHPLPEIADELRRKLQQRQPLPDSNPEES SV hide sequence

Ensembl Acc Id:

ENSRNOP00000021956 ⟸ ENSRNOT00000021956

Ensembl Acc Id:

ENSRNOP00000068240 ⟸ ENSRNOT00000075882

RefSeq Acc Id:	XP_038939149 ⟸ XM_039083221
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_038939148 ⟸ XM_039083220
- Peptide Label:	isoform X2
- UniProtKB:	D4A9J3 (UniProtKB/TrEMBL), A6INE2 (UniProtKB/TrEMBL), A0A096MJS2 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038939150 ⟸ XM_039083222
- Peptide Label:	isoform X3
- UniProtKB:	A0A096MJS2 (UniProtKB/TrEMBL)

Protein Domains

Ig-like Sema

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A9J3-F1-model_v2	AlphaFold	D4A9J3	1-834	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13696618

Promoter ID:

EPDNEW_R7131

Type:

single initiation site

Name:

Sema4c_1

Description:

semaphorin 4C

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	9	43,139,265 - 43,139,325	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562837	AgrOrtholog
BioCyc Gene	G2FUF-27806	BioCyc
Ensembl Genes	ENSRNOG00000016254	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000021956	ENTREZGENE
	ENSRNOT00000021956.8	UniProtKB/TrEMBL
	ENSRNOT00000075882	ENTREZGENE
	ENSRNOT00000075882.3	UniProtKB/TrEMBL
Gene3D-CATH	2.130.10.10	UniProtKB/TrEMBL
	2.60.40.10	UniProtKB/TrEMBL
	ligand-binding face of the semaphorins, domain 2	UniProtKB/TrEMBL
InterPro	Ig-like	UniProtKB/TrEMBL
	Ig-like_dom_sf	UniProtKB/TrEMBL
	Ig-like_fold	UniProtKB/TrEMBL
	Ig_sub	UniProtKB/TrEMBL
	Plexin-like_fold	UniProtKB/TrEMBL
	Plexin_repeat	UniProtKB/TrEMBL
	Semap_dom_sf	UniProtKB/TrEMBL
	Semaphorin	UniProtKB/TrEMBL
	Semaphorin/CD100_Ag	UniProtKB/TrEMBL
	WD40/YVTN_repeat-like_dom	UniProtKB/TrEMBL
KEGG Report	rno:301346	UniProtKB/TrEMBL
NCBI Gene	301346	ENTREZGENE
PANTHER	PTHR11036	UniProtKB/TrEMBL
	SEMAPHORIN-4C	UniProtKB/TrEMBL
Pfam	PSI	UniProtKB/TrEMBL
	Sema	UniProtKB/TrEMBL
PhenoGen	Sema4c	PhenoGen
PROSITE	IG_LIKE	UniProtKB/TrEMBL
	SEMA	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000016254	RatGTEx
SMART	PSI	UniProtKB/TrEMBL
	Sema	UniProtKB/TrEMBL
	SM00409	UniProtKB/TrEMBL
Superfamily-SCOP	Plexin repeat	UniProtKB/TrEMBL
	Sema	UniProtKB/TrEMBL
	SSF48726	UniProtKB/TrEMBL
UniProt	A0A096MJS2	ENTREZGENE, UniProtKB/TrEMBL
	A6INE2	ENTREZGENE, UniProtKB/TrEMBL
	D4A9J3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2016-01-21	Sema4c	semaphorin 4C	Sema4c	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2008-04-30	Sema4c	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C	Sema4c_predicted	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-30	Sema4c_predicted	sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4C (predicted)	RGD1562837_predicted	similar to Semaphorin 4C precursor (Semaphorin I) (predicted)	Symbol and Name updated	1299863	APPROVED
2006-03-10	RGD1562837_predicted	similar to Semaphorin 4C precursor (Semaphorin I) (predicted)		similar to Semaphorin 4C precursor (Semaphorin I) (Sema I) (Semaphorin C-like 1) (M-Sema F) (predicted)	Name updated	1299863	APPROVED
2006-03-07	RGD1562837_predicted	similar to Semaphorin 4C precursor (Semaphorin I) (Sema I) (Semaphorin C-like 1) (M-Sema F) (predicted)	LOC301346	similar to Semaphorin 4C precursor (Semaphorin I) (Sema I) (Semaphorin C-like 1) (M-Sema F)	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC301346	similar to Semaphorin 4C precursor (Semaphorin I) (Sema I) (Semaphorin C-like 1) (M-Sema F)			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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