Arl8b (ARF like GTPase 8B) - Rat Genome Database

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Pathways
Gene: Arl8b (ARF like GTPase 8B) Rattus norvegicus
Analyze
Symbol: Arl8b
Name: ARF like GTPase 8B (Ensembl:ADP-ribosylation factor like GTPase 8B)
RGD ID: 1562830
Description: Predicted to enable G protein activity; guanyl ribonucleotide binding activity; and tubulin binding activity. Predicted to be involved in several processes, including antigen processing and presentation following phagocytosis; lysosomal transport; and vesicle fusion. Predicted to act upstream of or within early endosome to Golgi transport and endosomal vesicle fusion. Predicted to be located in several cellular components, including cytolytic granule membrane; midbody; and spindle midzone. Predicted to be active in early endosome membrane and lysosomal membrane. Orthologous to human ARL8B (ARF like GTPase 8B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 4,4'-sulfonyldiphenol; bisphenol A.
Type: protein-coding
RefSeq Status: PROVISIONAL
Previously known as: ADP-ribosylation factor like GTPase 8B; ADP-ribosylation factor-like 8B; ADP-ribosylation factor-like protein 8B; LOC500282; similar to ADP-ribosylation factor-like 10C
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84143,304,597 - 143,348,580 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4143,304,621 - 143,349,068 (+)EnsemblGRCr8
mRatBN7.24141,748,634 - 141,792,605 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4141,748,587 - 141,792,596 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4147,170,642 - 147,214,634 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04142,951,373 - 142,995,361 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04141,595,356 - 141,639,346 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04140,837,745 - 140,881,866 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4140,837,745 - 140,881,865 (+)Ensemblrn6Rnor6.0
Rnor_5.04217,450,494 - 217,494,707 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44144,299,366 - 144,344,431 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4130,399,834 - 130,444,983 (+)NCBICelera
Cytogenetic Map4q41NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
axon  (IEA,ISO)
axon cytoplasm  (IEA)
cytolytic granule membrane  (IEA,ISO)
cytoplasm  (IEA,ISO)
cytosol  (IEA)
early endosome membrane  (IEA,ISO)
endosome membrane  (IEA)
late endosome membrane  (IEA)
lysosomal membrane  (IBA,IEA,ISO,ISS)
lysosome  (IEA,ISO,ISS)
midbody  (IEA,ISO)
spindle  (IEA)
spindle midzone  (IEA,ISO)
synapse  (IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. GOA pipeline RGD automated data pipeline
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.
Additional References at PubMed
PMID:14871887   PMID:15331635   PMID:15489334   PMID:19056867   PMID:19946888   PMID:22871113   PMID:24841562   PMID:25898167   PMID:30174114  


Genomics

Comparative Map Data
Arl8b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr84143,304,597 - 143,348,580 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl4143,304,621 - 143,349,068 (+)EnsemblGRCr8
mRatBN7.24141,748,634 - 141,792,605 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl4141,748,587 - 141,792,596 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx4147,170,642 - 147,214,634 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.04142,951,373 - 142,995,361 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.04141,595,356 - 141,639,346 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.04140,837,745 - 140,881,866 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl4140,837,745 - 140,881,865 (+)Ensemblrn6Rnor6.0
Rnor_5.04217,450,494 - 217,494,707 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.44144,299,366 - 144,344,431 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera4130,399,834 - 130,444,983 (+)NCBICelera
Cytogenetic Map4q41NCBI
ARL8B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh3835,122,292 - 5,180,911 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl35,122,249 - 5,180,911 (+)Ensemblhg38GRCh38
GRCh3735,163,977 - 5,222,596 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 3635,138,930 - 5,197,601 (+)NCBIBuild 36Build 36hg18NCBI36
Build 3435,138,929 - 5,197,599NCBI
Celera35,101,851 - 5,160,484 (+)NCBICelera
Cytogenetic Map3p26.1NCBI
HuRef35,096,488 - 5,155,029 (+)NCBIHuRef
CHM1_135,114,266 - 5,172,980 (+)NCBICHM1_1
T2T-CHM13v2.035,116,223 - 5,174,843 (+)NCBIT2T-CHM13v2.0
Arl8b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm396108,760,020 - 108,800,684 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl6108,760,060 - 108,802,239 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm386108,783,059 - 108,823,723 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl6108,783,099 - 108,825,278 (+)Ensemblmm10GRCm38
MGSCv376108,733,053 - 108,773,717 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv366108,748,887 - 108,789,496 (+)NCBIMGSCv36mm8
Celera6110,581,538 - 110,625,807 (+)NCBICelera
Cytogenetic Map6E2NCBI
cM Map649.87NCBI
Arl8b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554218,231,582 - 8,276,907 (-)Ensembl
ChiLan1.0NW_0049554218,231,337 - 8,276,907 (-)NCBIChiLan1.0ChiLan1.0
ARL8B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v225,128,058 - 5,185,788 (+)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan135,132,816 - 5,190,365 (+)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v035,069,592 - 5,127,301 (+)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.135,169,950 - 5,225,550 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl35,169,950 - 5,225,543 (+)EnsemblpanPan2panpan1.1
ARL8B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.12012,479,680 - 12,525,330 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl2012,481,860 - 12,525,499 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha2012,454,038 - 12,499,863 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.02012,523,061 - 12,568,915 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl2012,523,082 - 12,568,816 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.12012,228,473 - 12,274,183 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.02012,569,937 - 12,615,505 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.02012,556,036 - 12,601,620 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Arl8b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440494211,475,542 - 11,519,807 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365774,430,898 - 4,475,212 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365774,430,939 - 4,475,186 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
ARL8B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl1361,640,671 - 61,698,374 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.11361,640,619 - 61,696,819 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.21367,874,603 - 67,921,540 (-)NCBISscrofa10.2Sscrofa10.2susScr3
Sscrofa10.21368,038,504 - 68,047,742 (+)NCBISscrofa10.2Sscrofa10.2susScr3
ARL8B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12241,192,458 - 41,247,048 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2241,192,484 - 41,244,822 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041125,375,218 - 125,430,540 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Arl8b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462477315,785,339 - 15,832,668 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462477315,785,883 - 15,833,832 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Arl8b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1637,971,966 - 38,014,185 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Arl8b
381 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:195
Count of miRNA genes:141
Interacting mature miRNAs:154
Transcripts:ENSRNOT00000010053
Prediction methods:Miranda
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1582232Gluco25Glucose level QTL 253.60.0023blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)486583980149763391Rat
2302049Pia32Pristane induced arthritis QTL 325.10.001blood autoantibody amount (VT:0003725)serum immunoglobulin G-type rheumatoid factor level relative to an arbitrary reference serum (CMO:0002112)4107346299152346299Rat
724558Plsm2Polydactyly-luxate syndrome (PLS) morphotypes QTL 20.0003hindlimb integrity trait (VT:0010563)hind foot phalanges count (CMO:0001949)4134095016179095016Rat
1300116Hrtrt5Heart rate QTL 53.76heart pumping trait (VT:2000009)heart rate (CMO:0000002)4117737142152833657Rat
1358364Sradr4Stress Responsive Adrenal Weight QTL 44.92adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)4131384565176384565Rat
6478763Anxrr46Anxiety related response QTL 460.07428locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
10755501Bp390Blood pressure QTL 3902.5arterial blood pressure trait (VT:2000000)diastolic blood pressure (CMO:0000005)427730518170099664Rat
6478760Anxrr45Anxiety related response QTL 450.06717locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)4112427331157427331Rat
61451Ciaa4CIA Autoantibody QTL 43.1blood autoantibody amount (VT:0003725)calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)4123870974168870974Rat
1331738Bp209Blood pressure QTL 2092.979arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)4140059299181024663Rat
1331802Srn5Serum renin concentration QTL 53.045renin activity (VT:0005581)plasma renin activity level (CMO:0000116)4117559384162559384Rat
1298524Oia8Oil induced arthritis QTL 8joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
738009Sach4Saccharine consumption QTL 44.90.000016consumption behavior trait (VT:0002069)saccharin intake volume to total fluid intake volume ratio (CMO:0001601)460916264184426481Rat
7207480Bss105Bone structure and strength QTL 1058.1femur strength trait (VT:0010010)femur midshaft polar moment of inertia (CMO:0001669)4111383604156383604Rat
731165Uae21Urinary albumin excretion QTL 212.40.0001urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)4108206096153206096Rat
737821Hcar9Hepatocarcinoma resistance QTL 93.7liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)4106848959168870974Rat
634335Anxrr16Anxiety related response QTL 167.22locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)494638356168870820Rat
7411558Bw133Body weight QTL 13313.840.001body mass (VT:0001259)body weight gain (CMO:0000420)4127263297172263297Rat
6478778Anxrr51Anxiety related response QTL 510.25384locomotor behavior trait (VT:0001392)measurement of voluntary locomotion into, out of or within a discrete space in an experimental apparatus (CMO:0000957)4126334185171334185Rat
631511Pia7Pristane induced arthritis QTL 74.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
1549832Bss3Bone structure and strength QTL 311femur morphology trait (VT:0000559)femur midshaft cortical cross-sectional area (CMO:0001663)4111383604156383604Rat
70177Xhs1X-ray hypersensitivity QTL 125.1intestine integrity trait (VT:0010554)post-insult time to onset of moribundity (CMO:0001896)482944895154403548Rat
1354612Foco1Food consumption QTL 18.87eating behavior trait (VT:0001431)food intake rate (CMO:0000427)445429897149763204Rat
634347Hcar8Hepatocarcinoma resistance QTL 85.8liver integrity trait (VT:0010547)liver tumorous lesion area to total liver area ratio (CMO:0001075)4124700988169700988Rat
2303168Bp330Blood pressure QTL 3304.250.017arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)45889999148002343Rat
738031Alc14Alcohol consumption QTL 147.60.00003consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264174095838Rat
1576316Ept5Estrogen-induced pituitary tumorigenesis QTL 53.8pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)4100752691179366077Rat
1581566Eae21Experimental allergic encephalomyelitis QTL 216.2body mass (VT:0001259)maximum body weight loss to initial body weight ratio (CMO:0001400)4137447185182447185Rat
1576305Emca6Estrogen-induced mammary cancer QTL 65.8mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)445429709157555683Rat
1578674Bmd12Bone mineral density QTL 123.8femur mineral mass (VT:0010011)compact volumetric bone mineral density (CMO:0001730)4137430611182430611Rat
738016Alc16Alcohol consumption QTL 163.60.00015consumption behavior trait (VT:0002069)ethanol drink intake rate to body weight ratio (CMO:0001616)460916264184426481Rat
1358202Gluco11Glucose level QTL 112.40.02adipocyte glucose uptake trait (VT:0004185)absolute change in adipocyte glucose uptake (CMO:0000873)486709649168870974Rat
61422Cia13Collagen induced arthritis QTL 134.5joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4134199006168870974Rat
1354660Salc1Saline consumption QTL 111.26drinking behavior trait (VT:0001422)saline drink intake rate (CMO:0001627)445429897149763204Rat
737978Pia23Pristane induced arthritis QTL 235.3joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4123870974168870974Rat
61362Oia2Oil induced arthritis QTL 20.001joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)4140059299184426481Rat
2293840Kiddil9Kidney dilation QTL 92.9kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)4113634167149763391Rat
631674Iddm14Insulin dependent diabetes mellitus QTL 14blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)465495851159259805Rat
12798519Anxrr54Anxiety related response QTL 542.540.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4116184844161184844Rat
70201Gcr1Gastric cancer resistance QTL 12.7stomach morphology trait (VT:0000470)stomach tumor susceptibility score (CMO:0002043)4103834277148834277Rat
70200Alc18Alcohol consumption QTL 189.2drinking behavior trait (VT:0001422)ethanol intake volume to total fluid intake volume ratio (CMO:0001591)457613339151163960Rat
12798527Anxrr58Anxiety related response QTL 584.110.05locomotor behavior trait (VT:0001392)distance moved per unit of time into, out of or within a discrete space in an experimental apparatus (CMO:0001493)4121020385148834277Rat
2316958Gluco58Glucose level QTL 5810blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)412212457182430611Rat

Markers in Region
RH141030  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.24141,791,866 - 141,792,053 (+)MAPPERmRatBN7.2
Rnor_6.04140,881,128 - 140,881,314NCBIRnor6.0
Rnor_5.04217,493,969 - 217,494,155UniSTSRnor5.0
RGSC_v3.44144,343,693 - 144,343,879UniSTSRGSC3.4
Celera4130,444,245 - 130,444,431UniSTS
RH 3.4 Map4899.1UniSTS
Cytogenetic Map4q41UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000080663   ⟹   ENSRNOP00000071470
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4143,304,621 - 143,349,068 (+)Ensembl
mRatBN7.2 Ensembl4141,748,744 - 141,792,596 (+)Ensembl
Rnor_6.0 Ensembl4140,837,745 - 140,881,865 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100067   ⟹   ENSRNOP00000091362
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl4141,748,680 - 141,792,593 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116926   ⟹   ENSRNOP00000082350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl4143,304,621 - 143,343,508 (+)Ensembl
mRatBN7.2 Ensembl4141,748,587 - 141,787,533 (+)Ensembl
RefSeq Acc Id: NM_001024332   ⟹   NP_001019503
RefSeq Status: PROVISIONAL
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84143,304,631 - 143,348,580 (+)NCBI
mRatBN7.24141,748,656 - 141,792,605 (+)NCBI
Rnor_6.04140,837,745 - 140,881,866 (+)NCBI
Rnor_5.04217,450,494 - 217,494,707 (+)NCBI
RGSC_v3.44144,299,366 - 144,344,431 (+)RGD
Celera4130,399,834 - 130,444,983 (+)RGD
Sequence:
RefSeq Acc Id: XM_039108198   ⟹   XP_038964126
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84143,304,597 - 143,348,574 (+)NCBI
mRatBN7.24141,748,634 - 141,792,601 (+)NCBI
RefSeq Acc Id: XM_039108199   ⟹   XP_038964127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr84143,316,702 - 143,348,574 (+)NCBI
mRatBN7.24141,760,723 - 141,792,601 (+)NCBI
RefSeq Acc Id: NP_001019503   ⟸   NM_001024332
- UniProtKB: Q66HA6 (UniProtKB/Swiss-Prot),   A6IBL4 (UniProtKB/TrEMBL),   A0A8I5ZTT2 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000071470   ⟸   ENSRNOT00000080663
RefSeq Acc Id: XP_038964126   ⟸   XM_039108198
- Peptide Label: isoform X1
RefSeq Acc Id: XP_038964127   ⟸   XM_039108199
- Peptide Label: isoform X2
Ensembl Acc Id: ENSRNOP00000082350   ⟸   ENSRNOT00000116926
Ensembl Acc Id: ENSRNOP00000091362   ⟸   ENSRNOT00000100067

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-Q66HA6-F1-model_v2 AlphaFold Q66HA6 1-186 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13693284
Promoter ID:EPDNEW_R3809
Type:initiation region
Name:Arl8b_1
Description:ADP-ribosylation factor like GTPase 8B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.04140,837,784 - 140,837,844EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562830 AgrOrtholog
BioCyc Gene G2FUF-43445 BioCyc
Ensembl Genes ENSRNOG00000055860 Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot
Ensembl Transcript ENSRNOT00000080663 ENTREZGENE
  ENSRNOT00000100067.1 UniProtKB/Swiss-Prot
Gene3D-CATH 3.40.50.300 UniProtKB/Swiss-Prot
IMAGE_CLONE IMAGE:7121584 IMAGE-MGC_LOAD
InterPro Arl8a/8b UniProtKB/Swiss-Prot
  P-loop_NTPase UniProtKB/Swiss-Prot
  Small_GTP-bd_dom UniProtKB/Swiss-Prot
  Small_GTPase_ARF/SAR UniProtKB/Swiss-Prot
KEGG Report rno:500282 UniProtKB/Swiss-Prot
MGC_CLONE MGC:94020 IMAGE-MGC_LOAD
NCBI Gene 500282 ENTREZGENE
PANTHER ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8 UniProtKB/Swiss-Prot
  ADP-RIBOSYLATION FACTOR-LIKE PROTEIN 8B UniProtKB/Swiss-Prot
Pfam Arf UniProtKB/Swiss-Prot
PhenoGen Arl8b PhenoGen
PRINTS SAR1GTPBP UniProtKB/Swiss-Prot
PROSITE ARF UniProtKB/Swiss-Prot
RatGTEx ENSRNOG00000055860 RatGTEx
SMART ARF UniProtKB/Swiss-Prot
  RAB UniProtKB/Swiss-Prot
  RAS UniProtKB/Swiss-Prot
  SAR UniProtKB/Swiss-Prot
Superfamily-SCOP SSF52540 UniProtKB/Swiss-Prot
UniProt A0A8I5ZTT2 ENTREZGENE, UniProtKB/TrEMBL
  A0A8L2R5Y9_RAT UniProtKB/TrEMBL
  A6IBL4 ENTREZGENE, UniProtKB/TrEMBL
  ARL8B_RAT UniProtKB/Swiss-Prot, ENTREZGENE


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2024-11-07 Arl8b  ARF like GTPase 8B  Arl8b  ADP-ribosylation factor like GTPase 8B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2015-11-19 Arl8b  ADP-ribosylation factor like GTPase 8B  Arl8b  ADP-ribosylation factor-like 8B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-05 Arl8b  ADP-ribosylation factor-like 8B  LOC500282  similar to ADP-ribosylation factor-like 10C  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC500282  similar to ADP-ribosylation factor-like 10C      Symbol and Name status set to provisional 70820 PROVISIONAL