Rps19bp1 (ribosomal protein S19 binding protein 1) - Rat Genome Database

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Gene: Rps19bp1 (ribosomal protein S19 binding protein 1) Rattus norvegicus
Analyze
Symbol: Rps19bp1
Name: ribosomal protein S19 binding protein 1
RGD ID: 1562823
Description: Predicted to enable enzyme binding activity. Predicted to be involved in ribosomal small subunit biogenesis. Predicted to be located in nucleoplasm. Predicted to be part of small-subunit processome. Predicted to be active in nucleolus. Orthologous to human RPS19BP1 (ribosomal protein S19 binding protein 1); INTERACTS WITH amphetamine; bisphenol A; paracetamol.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: active regulator of SIRT1; LOC500907; RGD1562823; similar to RIKEN cDNA 2510038A11
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,689,636 - 113,693,116 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7113,689,636 - 113,693,023 (-)EnsemblGRCr8
mRatBN7.27111,809,354 - 111,812,741 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,809,355 - 111,812,757 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7113,566,713 - 113,567,335 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,790,250 - 115,790,872 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,759,612 - 115,760,234 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,488,453 - 121,489,075 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,485,800 - 121,489,078 (-)Ensemblrn6Rnor6.0
Rnor_5.07121,476,268 - 121,476,890 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47118,544,675 - 118,545,297 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7108,139,325 - 108,139,947 (-)NCBICelera
Cytogenetic Map7q34NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleolus  (IBA,IEA,ISO)
nucleoplasm  (IEA,ISO)
small-subunit processome  (IEA,ISO)

Molecular Function
enzyme binding  (IBA,IEA,ISO)
protein binding  (ISO)

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:16289379   PMID:22658674   PMID:22681889   PMID:23382074  


Genomics

Comparative Map Data
Rps19bp1
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr87113,689,636 - 113,693,116 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl7113,689,636 - 113,693,023 (-)EnsemblGRCr8
mRatBN7.27111,809,354 - 111,812,741 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl7111,809,355 - 111,812,757 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx7113,566,713 - 113,567,335 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.07115,790,250 - 115,790,872 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.07115,759,612 - 115,760,234 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.07121,488,453 - 121,489,075 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl7121,485,800 - 121,489,078 (-)Ensemblrn6Rnor6.0
Rnor_5.07121,476,268 - 121,476,890 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.47118,544,675 - 118,545,297 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera7108,139,325 - 108,139,947 (-)NCBICelera
Cytogenetic Map7q34NCBI
RPS19BP1
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382239,529,093 - 39,532,748 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2239,529,088 - 39,532,767 (-)Ensemblhg38GRCh38
GRCh372239,925,098 - 39,928,753 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362238,255,044 - 38,258,806 (-)NCBIBuild 36Build 36hg18NCBI36
Celera2223,727,166 - 23,730,928 (-)NCBICelera
Cytogenetic Map22q13.1NCBI
HuRef2222,889,686 - 22,893,448 (-)NCBIHuRef
CHM1_12239,883,839 - 39,887,601 (-)NCBICHM1_1
T2T-CHM13v2.02239,999,723 - 40,003,378 (-)NCBIT2T-CHM13v2.0
Rps19bp1
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391580,144,815 - 80,148,507 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1580,144,816 - 80,148,516 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381580,260,614 - 80,264,306 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1580,260,615 - 80,264,315 (-)Ensemblmm10GRCm38
MGSCv371580,091,044 - 80,094,736 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361580,087,869 - 80,091,561 (-)NCBIMGSCv36mm8
Celera1582,377,974 - 82,381,645 (-)NCBICelera
Cytogenetic Map15E1NCBI
cM Map1537.85NCBI
Rps19bp1
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495541325,412,341 - 25,416,086 (-)Ensembl
ChiLan1.0NW_00495541325,412,621 - 25,415,924 (-)NCBIChiLan1.0ChiLan1.0
RPS19BP1
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22349,376,313 - 49,380,085 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12252,067,659 - 52,071,403 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02220,435,302 - 20,439,059 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12238,255,694 - 38,259,454 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2238,255,694 - 38,259,454 (-)EnsemblpanPan2panpan1.1
RPS19BP1
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11025,518,543 - 25,521,806 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1025,518,629 - 25,521,736 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1025,454,669 - 25,457,916 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01026,270,531 - 26,273,795 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
UMICH_Zoey_3.11025,985,177 - 25,988,420 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01026,304,689 - 26,307,937 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01026,480,137 - 26,483,384 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Rps19bp1
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_0244049459,097,956 - 9,101,425 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049364922,108,294 - 2,115,996 (+)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049364922,108,374 - 2,112,744 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
RPS19BP1
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl58,735,382 - 8,738,799 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.158,735,363 - 8,738,808 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.256,034,993 - 6,038,420 (+)NCBISscrofa10.2Sscrofa10.2susScr3
RPS19BP1
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11922,099,664 - 22,104,311 (-)NCBIChlSab1.1ChlSab1.1chlSab2
Vero_WHO_p1.0NW_023666045103,547,466 - 103,552,113 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Rps19bp1
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247528,816,032 - 8,819,422 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247528,816,017 - 8,819,422 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Rps19bp1
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11250,029,292 - 250,032,627 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Rps19bp1
26 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:209
Count of miRNA genes:166
Interacting mature miRNAs:175
Transcripts:ENSRNOT00000024085
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300179Kidm5Kidney mass QTL 53.51kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)792388565119280177Rat
1331728Bp214Blood pressure QTL 2142.825arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)782111245123048330Rat
1331731Bp216Blood pressure QTL 2162.851arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7104186212135371468Rat
1357338Stl17Serum triglyceride level QTL 173.23blood triglyceride amount (VT:0002644)serum triglyceride level (CMO:0000360)771621154114982716Rat
70159Bp61Blood pressure QTL 610.0001arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)773618702118618702Rat
631687Hcas1Hepatocarcinoma susceptibility QTL 13.90.001liver integrity trait (VT:0010547)liver tumorous lesion volume to total liver volume ratio (CMO:0001082)793302009131686183Rat
61397Bw17Body weight QTL 176.3body mass (VT:0001259)body weight (CMO:0000012)795485047137014596Rat
631504Cm27Cardiac mass QTL 273.45heart left ventricle mass (VT:0007031)heart left ventricle wet weight (CMO:0000071)746307490127866166Rat
634322Bw12Body weight QTL 120body mass (VT:0001259)body weight (CMO:0000012)785043242130043242Rat
70173Niddm19Non-insulin dependent diabetes mellitus QTL 194.330.00005blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)785497398130497398Rat
1549899Stresp8Stress response QTL 84.370.0008stress-related behavior trait (VT:0010451)defensive burying duration (CMO:0001961)792362341137014596Rat
2317052Aia17Adjuvant induced arthritis QTL 172.13joint integrity trait (VT:0010548)left rear ankle joint diameter (CMO:0002149)783626689128626689Rat
631529Tls2T-lymphoma susceptibility QTL 200.001thymus integrity trait (VT:0010555)percentage of study population developing T-cell lymphomas during a period of time (CMO:0001911)782111382132099989Rat
731176Glom5Glomerulus QTL 52.50.0035kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)798549867137014596Rat
7411607Foco15Food consumption QTL 150.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
631201Panci1Pancreas inflammation QTL 100.001pancreas integrity trait (VT:0010560)percentage of study population displaying chronic pancreatitis at a point in time (CMO:0001214)773557047118557047Rat
634336Anxrr17Anxiety related response QTL 173.66locomotor behavior trait (VT:0001392)number of entries into a discrete space in an experimental apparatus (CMO:0000960)71509236116977875Rat
1331768Kidm10Kidney mass QTL 104.62096kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)782111245123048330Rat
61357Bp38Blood pressure QTL 381.60.052arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)740540077123682549Rat
2313102Bmd79Bone mineral density QTL 792.30.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)796700404118618702Rat
2316947Rf58Renal function QTL 587.8kidney glomerulus morphology trait (VT:0005325)index of glomerular damage (CMO:0001135)749682832115766396Rat
1331748Bp215Blood pressure QTL 2154.043arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)7110725024135371468Rat
10450862Kidm55Kidney mass QTL 554.9kidney mass (VT:0002707)kidney weight (CMO:0000081)772725037117725037Rat
61428Scl3Serum cholesterol level QTL 33.2blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)7100548246137014596Rat
1331746Kidm9Kidney mass QTL 93.934kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)782111245134948181Rat
10450856Livw4Liver weight QTL 43.8liver mass (VT:0003402)liver weight (CMO:0000092)772725037117725037Rat
7411654Foco25Food consumption QTL 259.30.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)777807807122807807Rat
2316955Stl24Serum triglyceride level QTL 247.1blood triglyceride amount (VT:0002644)plasma triglyceride level (CMO:0000548)749682832115766396Rat
10402855Bp379Blood pressure QTL 3790.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)778682549123682549Rat
2316952Pur22Proteinuria QTL 225.2urine protein amount (VT:0005160)urine protein level (CMO:0000591)749682832115766396Rat
631540Bw9Body weight QTL 94.5body mass (VT:0001259)body weight (CMO:0000012)771621154119349044Rat
1358891Bp265Blood pressure QTL 2652.21arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)771827901136544683Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 164 91 90 59 92 59 6 356 192 11 143 81 92 31 17 17

Sequence


Ensembl Acc Id: ENSRNOT00000024085
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7121,488,154 - 121,489,076 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092318
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl7121,485,800 - 121,486,729 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000092529   ⟹   ENSRNOP00000075834
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl7113,689,636 - 113,693,023 (-)Ensembl
mRatBN7.2 Ensembl7111,809,355 - 111,812,757 (-)Ensembl
Rnor_6.0 Ensembl7121,485,814 - 121,489,078 (-)Ensembl
RefSeq Acc Id: NM_001420251   ⟹   NP_001407180
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87113,689,636 - 113,693,023 (-)NCBI
mRatBN7.27111,809,354 - 111,812,741 (-)NCBI
RefSeq Acc Id: XM_063264141   ⟹   XP_063120211
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87113,689,636 - 113,692,825 (-)NCBI
RefSeq Acc Id: XM_063264142   ⟹   XP_063120212
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr87113,690,380 - 113,693,116 (-)NCBI
Ensembl Acc Id: ENSRNOP00000075834   ⟸   ENSRNOT00000092529
RefSeq Acc Id: NP_001407180   ⟸   NM_001420251
- UniProtKB: A0A0U1RRW3 (UniProtKB/TrEMBL),   A6HSW6 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063120211   ⟸   XM_063264141
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063120212   ⟸   XM_063264142
- Peptide Label: isoform X2
- UniProtKB: A6HSW7 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A0U1RRW3-F1-model_v2 AlphaFold A0A0U1RRW3 1-141 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13695497
Promoter ID:EPDNEW_R6022
Type:multiple initiation site
Name:Rps19bp1_1
Description:ribosomal protein S19 binding protein 1
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.07121,489,065 - 121,489,125EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562823 AgrOrtholog
BioCyc Gene G2FUF-32704 BioCyc
Ensembl Genes ENSRNOG00000017847 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000092529 ENTREZGENE
  ENSRNOT00000092529.3 UniProtKB/TrEMBL
InterPro AROS UniProtKB/TrEMBL
NCBI Gene 500907 ENTREZGENE
PANTHER ACTIVE REGULATOR OF SIRT1 UniProtKB/TrEMBL
  PTHR31454 UniProtKB/TrEMBL
Pfam AROS UniProtKB/TrEMBL
PhenoGen Rps19bp1 PhenoGen
PRINTS ACTREGSIRT1 UniProtKB/TrEMBL
RatGTEx ENSRNOG00000017847 RatGTEx
UniProt A0A0U1RRW3 ENTREZGENE, UniProtKB/TrEMBL
  A6HSW6 ENTREZGENE, UniProtKB/TrEMBL
  A6HSW7 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2008-02-29 Rps19bp1  ribosomal protein S19 binding protein 1  RGD1562823_predicted  similar to RIKEN cDNA 2510038A11 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562823_predicted  similar to RIKEN cDNA 2510038A11 (predicted)  LOC500907  similar to RIKEN cDNA 2510038A11  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC500907  similar to RIKEN cDNA 2510038A11      Symbol and Name status set to provisional 70820 PROVISIONAL