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Gene: Tdrd12 (tudor domain containing 12) Rattus norvegicus

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Symbol:

Tdrd12

Name:

tudor domain containing 12

RGD ID:

1562792

Description:

Predicted to enable several functions, including ATP binding activity; helicase activity; and nucleic acid binding activity. Predicted to be involved in several processes, including germ-line stem cell division; male meiotic nuclear division; and regulatory ncRNA-mediated gene silencing. Predicted to be part of PET complex. Orthologous to human TDRD12 (tudor domain containing 12); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; bisphenol A; Cuprizon.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC292813; LOC689639; putative ATP-dependent RNA helicase TDRD12; RGD1562792; similar to CG11133-PA; similar to RIKEN cDNA 2410004F06

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TDRD12 (tudor domain containing 12)	HGNC	EggNOG, Ensembl, Inparanoid, OMA, OrthoDB, OrthoMCL, Panther, Treefam
Mus musculus (house mouse):	Tdrd12 (tudor domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tdrd12 (tudor domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TDRD12 (tudor domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TDRD12 (tudor domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tdrd12 (tudor domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TDRD12 (tudor domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TDRD12 (tudor domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tdrd12 (tudor domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tdrd12 (tudor domain containing 12)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Alliance orthologs ³
Mus musculus (house mouse):	Tdrd12 (tudor domain containing 12)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Homo sapiens (human):	TDRD12 (tudor domain containing 12)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tdrd12 (tudor domain containing 12)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tdrd12 (tudor domain containing 12)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	BoYb	Alliance	DIOPT (InParanoid\|OrthoFinder\|PhylomeDB)
Drosophila melanogaster (fruit fly):	BoYb	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB\|SonicParanoid)
Drosophila melanogaster (fruit fly):	SoYb	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Drosophila melanogaster (fruit fly):	fs(1)Yb	Alliance	DIOPT (OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	tdrd12	Alliance	DIOPT (Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	97,270,280 - 97,342,637 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	97,271,185 - 97,342,699 (-)	Ensembl				GRCr8
mRatBN7.2	1	88,133,271 - 88,205,729 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	88,133,373 - 88,205,705 (-)	Ensembl				mRatBN7.2
Rnor_6.0	1	91,739,126 - 91,811,577 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	91,740,933 - 91,811,547 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	92,865,962 - 92,939,297 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	88,001,744 - 88,072,002 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
RGSC_v3.4	1	88,009,688 - 88,027,194 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	82,483,162 - 82,555,576 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

male infertility (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

1,2-dimethylhydrazine (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

aristolochic acid A (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

bisphenol F (ISO)

Cuprizon (EXP)

dorsomorphin (ISO)

endosulfan (EXP)

entinostat (ISO)

genistein (ISO)

gentamycin (EXP)

lead(0) (ISO)

potassium dichromate (ISO)

SB 431542 (ISO)

sodium arsenite (ISO)

titanium dioxide (ISO)

valproic acid (ISO)

vinclozolin (EXP)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cell differentiation (IEA)

fertilization (ISO)

germ-line stem cell division (IBA)

male meiotic nuclear division (ISO)

meiotic cell cycle (IEA)

piRNA processing (ISO)

regulatory ncRNA-mediated gene silencing (IEA)

spermatogenesis (IEA,ISO)

transposable element silencing by piRNA-mediated DNA methylation (ISO)

Cellular Component

PET complex (ISO)

Molecular Function

ATP binding (IEA)

helicase activity (IEA)

hydrolase activity (IEA)

nucleic acid binding (IEA)

nucleotide binding (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:24067652	PMID:24270810	PMID:26669262

Genomics

Comparative Map Data

Tdrd12
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	1	97,270,280 - 97,342,637 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	1	97,271,185 - 97,342,699 (-)	Ensembl				GRCr8
mRatBN7.2	1	88,133,271 - 88,205,729 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	1	88,133,373 - 88,205,705 (-)	Ensembl				mRatBN7.2
Rnor_6.0	1	91,739,126 - 91,811,577 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	1	91,740,933 - 91,811,547 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	1	92,865,962 - 92,939,297 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	1	88,001,744 - 88,072,002 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
RGSC_v3.4	1	88,009,688 - 88,027,194 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	1	82,483,162 - 82,555,576 (-)	NCBI		Celera
Cytogenetic Map	1	q21	NCBI

TDRD12
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	19	32,719,767 - 32,829,580 (+)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	19	32,719,753 - 32,829,580 (+)	Ensembl			hg38	GRCh38
GRCh37	19	33,210,673 - 33,320,486 (+)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	19	37,902,499 - 38,004,006 (+)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	19	29,904,299 - 29,975,332 (+)	NCBI		Celera
Cytogenetic Map	19	q13.11	NCBI
HuRef	19	29,713,951 - 29,784,334 (+)	NCBI		HuRef
CHM1_1	19	33,211,966 - 33,282,865 (+)	NCBI		CHM1_1
T2T-CHM13v2.0	19	35,238,502 - 35,348,349 (+)	NCBI		T2T-CHM13v2.0

Tdrd12
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	7	35,166,366 - 35,237,206 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	7	35,168,523 - 35,237,170 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	7	35,466,941 - 35,537,784 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	7	35,469,098 - 35,537,745 (-)	Ensembl			mm10	GRCm38
MGSCv37	7	36,278,629 - 36,322,763 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	7	35,202,370 - 35,246,442 (-)	NCBI		MGSCv36	mm8
Celera	7	30,622,196 - 30,666,614 (-)	NCBI		Celera
Cytogenetic Map	7	B2	NCBI
cM Map	7	21.37	NCBI

Tdrd12
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955468	5,141,077 - 5,275,748 (-)	Ensembl
ChiLan1.0	NW_004955468	5,201,216 - 5,277,062 (-)	NCBI	ChiLan1.0	ChiLan1.0

TDRD12
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	20	38,702,377 - 38,802,716 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	19	40,688,238 - 40,801,872 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	19	29,638,686 - 29,750,249 (+)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	19	38,386,216 - 38,489,791 (+)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	19	38,386,557 - 38,489,791 (+)	Ensembl			panPan2	panpan1.1

TDRD12
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	1	119,229,721 - 119,290,101 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	1	119,231,485 - 119,290,086 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	1	118,629,868 - 118,700,287 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	1	119,830,747 - 119,901,232 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	1	119,832,505 - 119,900,715 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	1	119,393,854 - 119,464,441 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	1	119,014,335 - 119,084,954 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	1	120,074,270 - 120,144,554 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tdrd12
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409349	8,630,237 - 8,698,838 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936570	2,947,425 - 3,015,549 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936570	2,947,069 - 3,015,549 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TDRD12
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	6	42,589,556 - 42,665,845 (+)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	6	42,589,557 - 42,667,946 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	38,034,437 - 38,106,866 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TDRD12
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	6	27,772,397 - 27,874,056 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	6	27,783,408 - 27,867,776 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666073	5,356,529 - 5,461,474 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tdrd12
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624794	7,641,387 - 7,712,126 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624794	7,641,105 - 7,740,091 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tdrd12
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	2	163,122,890 - 163,191,905 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in Tdrd12
394 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	36
Count of miRNA genes:	35
Interacting mature miRNAs:	36
Transcripts:	ENSRNOT00000017021
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1578649	Bmd8	Bone mineral density QTL 8	4.9		femur mineral mass (VT:0010011)	trabecular volumetric bone mineral density (CMO:0001729)	1	51940904	101229020	Rat
1582234	Gluco18	Glucose level QTL 18	3.4	0.0003	blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	87889942	132889942	Rat
634314	Niddm44	Non-insulin dependent diabetes mellitus QTL 44			blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	1	51941022	208479811	Rat
1358359	Sradr1	Stress Responsive Adrenal Weight QTL 1	4.74		adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	39728272	132889942	Rat
1578654	Bss10	Bone structure and strength QTL 10	4		femur morphology trait (VT:0000559)	femoral neck cortical cross-sectional area (CMO:0001702)	1	51940904	168768703	Rat
2300324	Fetw1	Fetal weight QTL 1	12.1	0.005	fetal growth trait (VT:0004201)	fetal body weight (CMO:0002080)	1	92963855	109494029	Rat
1331800	Scl25	Serum cholesterol level QTL 25	3.013		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	87785026	142582336	Rat
7421628	Bp361	Blood pressure QTL 361		0.001	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	1	83019780	128019780	Rat
631495	Bp96	Blood pressure QTL 96	4.52		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	66404680	111404680	Rat
70225	Bp58	Blood pressure QTL 58	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34184556	172281316	Rat
631512	Scl6	Serum cholesterol level QTL 6	9.6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	1	81269860	99645535	Rat
2298545	Neuinf8	Neuroinflammation QTL 8	4.6		nervous system integrity trait (VT:0010566)	spinal cord beta-2 microglobulin mRNA level (CMO:0002125)	1	66009857	160501508	Rat
10059597	Bp377	Blood pressure QTL 377	3.42	0.025	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	34565911	208798288	Rat
631519	Pia11	Pristane induced arthritis QTL 11	5.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	1	93903998	191260518	Rat
1302788	Scl19	Serum cholesterol QTL 19	4.6	0.001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	66400974	132889942	Rat
1549903	Bp267	Blood pressure QTL 267			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	1	84107164	115183752	Rat
2313083	Bmd74	Bone mineral density QTL 74	4	0.0001	tibia mineral mass (VT:1000283)	total volumetric bone mineral density (CMO:0001728)	1	91302413	136302413	Rat
2313402	Anxrr24	Anxiety related response QTL 24			aggression-related behavior trait (VT:0015014)	tameness/aggressiveness composite score (CMO:0002136)	1	51511344	153680016	Rat
1358192	Ept13	Estrogen-induced pituitary tumorigenesis QTL 13	3.4		pituitary gland mass (VT:0010496)	pituitary gland wet weight (CMO:0000853)	1	86622262	131622262	Rat
6903308	Scl36	Serum cholesterol QTL 36	2	0.0125	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	1	58769992	103769992	Rat
2300164	Bmd44	Bone mineral density QTL 44	5.4	0.0001	lumbar vertebra mineral mass (VT:0010511)	volumetric bone mineral density (CMO:0001553)	1	66077886	111077886	Rat
738022	Anxrr13	Anxiety related response QTL 13	4.6	0.00039	locomotor behavior trait (VT:0001392)	measurement of voluntary locomotion into, out of, or within a discrete space in an open field apparatus (CMO:0001514)	1	92683681	137683681	Rat
10054135	Gmadr2	Adrenal mass QTL 2	1.97	0.0129	adrenal gland mass (VT:0010420)	both adrenal glands wet weight (CMO:0000164)	1	86993904	131993904	Rat
152025249	Scl82	Serum cholesterol level QTL 82	4.77		blood cholesterol amount (VT:0000180)		1	52891222	109116986	Rat
1331749	Hrtrt11	Heart rate QTL 11	2.973		heart pumping trait (VT:2000009)	heart rate (CMO:0000002)	1	92683681	137683681	Rat
7411712	Strs4	Sensitivity to stroke QTL 4	8.7		cerebrum integrity trait (VT:0010549)	percentage of study population developing cerebrovascular lesions during a period of time (CMO:0000932)	1	87558587	132558587	Rat
724529	Cm16	Cardiac mass QTL 16	2.7		heart mass (VT:0007028)	calculated heart weight (CMO:0000073)	1	96717367	160111531	Rat

Markers in Region

D1Got91

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	1	88,190,179 - 88,190,280 (+)	MAPPER	mRatBN7.2
Rnor_6.0	1	91,796,024 - 91,796,124	NCBI	Rnor6.0
Rnor_5.0	1	92,923,769 - 92,923,869	UniSTS	Rnor5.0
RGSC_v3.4	1	88,056,635 - 88,056,736	RGD	RGSC3.4
RGSC_v3.4	1	88,056,636 - 88,056,736	UniSTS	RGSC3.4
RGSC_v3.1	1	88,134,747 - 88,134,847	RGD
RH 3.4 Map	1	867.2	UniSTS
RH 3.4 Map	1	867.2	RGD
RH 2.0 Map	1	556.2	RGD
Cytogenetic Map	1	q21	UniSTS

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
12	7	42	85	47	44	15	57	15	6	236	128	9	64	74	86	29	3	3

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001432607	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001432608	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588860	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588866	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588867	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588869	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588872	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588874	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017588875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590062	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590063	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590064	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590066	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590067	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017590068	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100861	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100862	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100863	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039100864	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277978	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063277999	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	AC136661	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000001	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000017021 ⟹ ENSRNOP00000017021

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	97,271,185 - 97,342,659 (-)	Ensembl
mRatBN7.2 Ensembl	1	88,133,373 - 88,205,705 (-)	Ensembl
Rnor_6.0 Ensembl	1	91,740,933 - 91,811,547 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000108717 ⟹ ENSRNOP00000096443

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	97,271,185 - 97,342,699 (-)	Ensembl
mRatBN7.2 Ensembl	1	88,133,373 - 88,205,546 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000113448 ⟹ ENSRNOP00000080995

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	97,271,185 - 97,342,659 (-)	Ensembl
mRatBN7.2 Ensembl	1	88,133,373 - 88,205,705 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000138655 ⟹ ENSRNOP00000102057

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	97,279,519 - 97,342,699 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000146255 ⟹ ENSRNOP00000112331

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	97,280,524 - 97,342,699 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000172090 ⟹ ENSRNOP00000099125

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	1	97,300,120 - 97,342,444 (-)	Ensembl

RefSeq Acc Id:

XM_017590063 ⟹ XP_017445552

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,270,280 - 97,342,637 (-)	NCBI
mRatBN7.2	1	88,133,273 - 88,205,729 (-)	NCBI
Rnor_6.0	1	91,739,126 - 91,811,577 (-)	NCBI

Sequence:

show sequence

TGAGCGCGGGCCGTTAAGAGTGCGTGCGAGGGCCTTGCGAAGGCTGCTAGTGCAGAATCTCCCA
GGCAAGGTCGAAGCGTCCAATTTGTTGGCGGTGAAGGACGTGCACTCTCACTCCGTGTGCTGTC
TCACCTGTCTGTGTGGTGTGAGCTCCTCTGTGAGAGAAGGGCAAGGAAGTGTCTGCAGGATGCT
CGAGGTCCTGGTGCTGAAGATTGAAGATCCAGGTTGCTTCTGGGTAATTATAAAAGGATGTAGT
CATTTTTTAGAACAAGAAGTTGACTACCAAAAACTAAACAGTGCCATGAATGACTTCTATAACA
GCATGTGTCAAGACATAGAAATAAAGCCGTTAATGCTAGAAGAAGGCCAGGTGTGTGTGGTGTA
CTGTCAGGAGCTGAAGTGCTGGTGCAGGGCTGTGATTAAGTCGATCATCTCTTCTGCAGACCAT
TACCTGGCGGAGTGTTTCCTTGTGGATTTTGCCAAGTATATTCCAGTAAAATCTAAAAACATCC
GAGTTGCAGTAGAGTCTTTTATGCAGCTTCCTTACAGAGCAAAAAAATTCAGACTTTACTGTAC
AAAACCTGTGACATTGCACATTGACTTCTGTGAAGACAATGCTGAAATTGTACCTGCCACAAAA
TGGGACAGTGCAGCTATCCAGTACTTTCAGAACATTCTAAGAGCAACTACCCAAGTGGAAGCAA
AGCTATGCGCTGTGGAAGAAGATACTTTTGAGGTTTACCTTTATGCAACAATAAAAAATGAAAA
AGTTTGTGTTAATGATGATCTAGTTGCAAAGAATTTTGCTTATTATGTGTCACCAATGGGGAAC
AAAAACCTCAATACTTTGGAGAAACCCAGGCTGAGTCTCAATTCGGTGCCCTGCTCCAGTAAGC
TCAGCCCATCACTTACTCTGTGGCCAATGCTTCTGCAAGGAAAAGACTGTCAGAGAATGGAAAA
CTCACAGAGTTTAGATTTTCTGGCACAGTCTCTCCAGCATACATGGTGTAAGGACGTTGTCGGT
GACCTAGGACCACGTGCTGCAGTACTGGATAAAGCTGTAAACTATAAGGATTCCTTGACAGATT
CGCCTACAATTATGTTTGAGAAGAAGCAACAGAGCCTCCCTTTAAAACACATGGATAAGTGCAT
TGAATCTTCTATGTACTGGCCAACAAAAAGAGGCATAACCATATATGCTGATCCAGATATTCCA
GCAGCAAGTGTGTTTAGCCAGAAGCCAAGTGAGAAGCCACTGCGGTTGACTGAAAAGAAAGACT
GTGACGAGAAGAATGGCTGTGTAAAATTACTACAGTTTCTAAATCCTGATCCTTTGAGAGCTGA
TGAGATCTCTGACCTGCACCAGTTGCAGAAGGTGAAGCTGGGCACATTGCAGCCTGGTGTGGTG
CTCCGGAACAGGATCGAGCCCTGCCTCACACTGGATAAATCACCTCTGTCAGCAGACCTGAAGA
AGGCTCTTCAAAGAAACAAGTTTCCAGGACCCAGCCACACTGCATCTTACTCTTGGCCTCCTAT
TGCACGTGGCTGTGATGTGGTTGTCATTTCTCACTGTGGAAATGACCCCTTGTTGTACCTGCCA
CCGCTGCTTACGATTTTGCAGATGGGGGGCTGCTACAAGTCATTACCAAGTAGAAATGGACCTC
TTGCAGTCATCGTGTGTCCAGGGTGGAAAAAGGCTCAGTTTATTTTTGAGTTGTTGGGAGACTA
TAGCATGTCCTCCAGGCCTCTTCATCCTGTGTTATTAACAATTGGACTTCACAAAGACGAAGCC
AAAAATATGAAGCTTCCAAGGGGATGTGATGTGATTGTCACAACGCCACACAGCCTTCTGAGAC
TTCTCACGTACCGAAGCTTGTTATTCCTTAGACTCTGCCACCTGGTTCTGGATGAAGTGCACGT
ACTGTTCTTCGAAGCTAACGAACAAATGTTTGCCATATTAGATAACTTTAAAAAAAACGTTGAA
GTGGAGGAGCGGGAGTCTGCGCCACACCAGATTGTAGCCGTGGGTGTTCACTGGAACAGACACA
TAGAGCATCTAGTCAGAGAGTTCATGAAGGATCCCCACGTCGTGATCACTGCCCTGGAGGAGGC
TGCCCTCTACGGCAGTGTCCAGCAGGTAGTGCATCTGTGCCTGGAGTGCGAGAAAACCTCGACT
TTACTCCAAGTTCTTGACTTTGTTCCAAGTCAGGCCCAGAAGACCTTGATCTTTACCTGCTCCG
TAGCAGAGACAGAGATTGTATGTAAGGTAGTAGAAAGCAATTCAATATTTTGCTTGAAAATGCA
TAAAGAAATGGCTTTTAATTTAAAAAGTATTTTGGAACAGTGGAAGAAGAAGTTAAGCTCTGGC
TCCCATATTGTGTTAACCTTAACAGATGACTGCATACCGCTCTTGGCCATCACCGATGCCACAT
GCGTGGTTCACTTCAGCTTTCCTTCCTCACCAAAAGTATTTGGTGGACGCCTGTATTGCATGTC
TGATCATTTTCAGAGTTTAACTGAGCAGGGCTCACCTGCAGAGCAGGGAGGTAAGAAAACGAAA
TCTGTCCTACTGCTGACGGAGAGGAATGCCAGCCATGCCGTCGGGGTCCTGCGATACTTGGAGC
GAGCAGATGCCAAAATTCCATCGGAGCTGTATGAGTTTACTGCAGGGGTCCTGGAAGCCAAAGA
AGATAAGAAAGCTAGAAGACCTCTCTGTCCATATCTTAAAGCTTTTGGCTTTTGCAAAGACAAA
AGGATCTGTCCTGACCGGCACCACATTAATCCAGAAATGGACATCCCAAGGAAATTATCCAATG
AAACTCTACCAGTGTTTGGGCACATTAGGATAATACCTTTTTACATTTCAAATGCAACCAATTA
TTTTGGCCGTATAATTGATAAACATGTGGATCTTTATGAAACTCTCAATGCAGAAATGAATGAA
TATTTTAAGGATCCCAGTAATAAAACAGCTGCTGAAAAGGTGGAAAATTTGGGGTTGTATGGAT
TAGAAGAAAAAACACTTTTCCAGAGGGTTCAGGTGTTGGAAGCGAGCCAGAAGGAAGACACCTG
GGGTTTGGGGAGTGTCCTGGTGAAATTCATAGATGAAGGCAGGACCAAGCTCATCACAAGAGAC
CAGCTGCTGCTGCTCCCAGAGAAGTTTCACACTCTGCCCCCTCAGGCTGTGGAGTTCATTGTTT
GTAGGGTTAAACCAGCTGACAGTGAAATTGAATGGAACCCAAAGGTTACTAGATACATTCATCA
TAAAATTATTGGGAAAATGCATGAGGCCAAGGTGGTATTCGCTTTGGGAAATACCCTTTGGATT
GATCCAATGGTGCATGTTACAAAACTTTCAAATTTAAAAACTTCTGTCATTGATTATAATGTTC
GAGCTGAAATTTTGTCCATGGGAATGGGTATTGATAATTCAGAACATGTAGAACAACTGAAAAA
ACTACACAAAGAAGCTAAGCTGCCAGCCTTTGTGGACCTTCCAAGCCAGACTTCGATACCCACA
ACAGTAGAAGGCACCATGTGTTTGCAGGGCACTCAGCGAGGAGACAGAGGTACAGAAAGAGGAG
CTGGTTCCCAGGTGGACCCAGACAACCAAAAGCCTGGAGTTTTATCTGAAGACATTGGCCATGA
GACCATTAGCAAAGCTACACAGCCACATGTGAGAAGCTTTCACCCACAAATAAAGTGGTTCCAA
AAGGATGACCACATCATCTTAAAGATAAAAATAAGGAATGTCAAAGACTATAAGTGTAAATTCT
TTACAGATAGAGTCATTTTCAGTGCCTGGGTAGGAGACAAGTTTTACTTGGCTGATATGGAACT
GCAAGGTGACATAAGGAAAGATGACTGCAAATGCATAATTAAGGATGATGAGCCTCTAATCACA
CTTGCAAAAGAGAAACGGGCATGCTGGTGTGGCCTCCTCAAGCAGAGGAATCCTAATGTGGCTT
TTGACTTTGACCACTGGGAGGAGTGTGAAGAGGACAGCCCTTTCTCCAAGGTCGTAAGTTCTAA
AACCCTGTCCTGCAAAGCGGCAGCACTGGCTGAAAGCAGCAGCTCCTCTTCAGACATGACTGAC
GGGAGTGAGAGCGAATGAGGCCGTGCATGGACCAACGCCAGCGAGAAGACAGACAACTGCACAC
ACAGTCACGGCCAACCCTTTTCACCTGGAGAGTGACTTGTCACTGTCATTGTGTGGCACTGCCA
TGGATGATGATGAGAAGTTCTTAATTGATTTAAAGTGGGTAGACAAGCCAAGTGATAGGTTATG
ATGAGATTGTCAAAGGAGAGTCCACAATCAGGGACACAGAAAGTTAGGGACATTTTTAATTCTA
GCCCTCAGGAGATTGAGGCAGGAGGATTACAAGTTTGAGGGCAGCCAGGACTATATAGGGAGGT
TCTGTTTCCAAAAATGTGTTTTCCATCAAAGGTCCTGTGTAACCCAAGTGTATGCAGTGTGTCC
TCTCACTGACTCTCTTAGCTCATCCTGACTACTGATCGTAGAGACGGAGAGCAAACCCTAACAC
TAGGTAGTAGATTGATCTTGTAAGGAGTTAGTCTACTCAATTGCCGTGTAGACCCGTGTGTGGC
ACTGCTTAAAACTTGTCTCTCACGCAGAAACTGGAGAGTCTGTCTTACACTTTTACACCCAGCC
GGACTTGCCAGCCCCTTTCACCACAGGACCTAAATGCCCAACTGCGCCATACAAAAACTCCCTA
AATTTTCCTGGCTTTGACAGCTACTAAGAGATACAAATTGACTTCTTTTCCCCAAAGGCAAGAT
AGATTTGCCTCAGCTCAGTGGAACCCTGGGCAGAACTTTCTTTCAGAAATGCTTATAGGACTTA
CTAACCTTCAGACTCCCCGGATGTGGTGAGTCCTGAGAACACTAATGGCAAATCTGAATGAATG
CAGCTGTAACACCCCGGTTTGGGGACAGGGTGTGTGGTTATCGTTTAAATGTCACTGACACAGT
TGGGAAGGTGAGTGTGGGAACTTCACAACCCAGTGTCTTAGCATCTCCGCATCAGTGTCCCTCA
AGTGAGAAGGGACATGGATGGAGCCGCACTGTTGAGGGACGGACTCCCCTAAGCATATCCTATG
CTCTCCATATCAGAAAGTACCGATATTCAGAGATGCGCCCATGCCTGTCATTCCAGCATATGAG
AGGTGGAGACAGGAGGACCAAGAAGTGTCAGGCCAGCCTGGGCTACATAAGAACTAGTGTCAAA
ACCTGAAGAAAAAAGAAAAAGAAACAGAGATGTCAAGAGTTCTGTAACCCCAAGAGTTAGCCGT
TGCACAGGCGAGGAGGCAACGTCTCCTGGCTTTCTGTGCCAGAGGGCTGGGCCCACACTGGTTC
TTGGTTTTCTTATCTGTAAAATAAGACCTGAGCACATTCAGCCCACGAGAGTCCAGGGTGTTGT
GGGGTGGGCACCTGGCTTTCACAGTGACTGTGAGGGGGTCAGACCTGTGCCAGGAGTCAGAGAC
TGCCTAGCCTGGGCCGCTACCAGGAAGACATCCTTTTTGCTGCTATGACTCTTGGGTTGGTAGT
CCCATATCAGAGGGCCATAATGCAAAGTGGTTCTTGACAAAGCAGAAAGCATGGTGTCTTGCTG
GAACATTTCAACTGTGAGACTGGTCCATTTGTACAGATGCAGGTCCACCCAGGTGGTGGAGGGC
TGTGGTGACACTGAACACTGAGTTGAGTGCAAGTGGCAGACTGTCTCAGAAGACCCAGCGAAAT
GGGACACAGCTCTGTTTACATCATTTTTTTTCAGGTGGTCAGATTTTCCAATACTTAACCCTCT
GAGCAAAATCTTGTAGCACATGGGAGGCTATGCTGACAGTCAGCTATTGCCTTCTGTATTATAC
TAAACTCTACTGATTGAGGTACACTTCTGAAATATGACATGGAAATACTTGAAGAGTTAGTGCT
CTAGAATTGCTCCCATATGATATGAGCATCTTTGTGGTGGATTATCAATAAAGCTCCAGTGTAA
TGTTGGTCACAGGTTTTTGTTCTGCATCGAATGCAAAGGAACATTCACACTTCTAGAAAGTAAA
ATGCCAGCAAAGGCAGTGAGTTGGTTGTGCGTGATGCTGA

hide sequence

RefSeq Acc Id:

XM_017590064 ⟹ XP_017445553

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,270,280 - 97,342,404 (-)	NCBI
mRatBN7.2	1	88,133,273 - 88,205,470 (-)	NCBI
Rnor_6.0	1	91,739,126 - 91,811,360 (-)	NCBI

Sequence:

show sequence

AGTGCCTGAGGCCTTCCTCGAGGAGCTTCCCCACGTGCCGCTGCCATCTTAGGTCTCCAAAACT
CGGGTGCCTTAGGCTCGCTTTCAGCTGAGCGAGTGGAGCAGTTGCACCCTGGTTGCAGATGTGG
TGGCAAATGCTAATATACTTCAAATATTCAGTATATGAACTGGGCACAGTGGAGCATGCAGGGA
AATCACAATTGAAGATCCAGGTTGCTTCTGGGTAATTATAAAAGGATGTAGTCATTTTTTAGAA
CAAGAAGTTGACTACCAAAAACTAAACAGTGCCATGAATGACTTCTATAACAGCATGTGTCAAG
ACATAGAAATAAAGCCGTTAATGCTAGAAGAAGGCCAGGTGTGTGTGGTGTACTGTCAGGAGCT
GAAGTGCTGGTGCAGGGCTGTGATTAAGTCGATCATCTCTTCTGCAGACCATTACCTGGCGGAG
TGTTTCCTTGTGGATTTTGCCAAGTATATTCCAGTAAAATCTAAAAACATCCGAGTTGCAGTAG
AGTCTTTTATGCAGCTTCCTTACAGAGCAAAAAAATTCAGACTTTACTGTACAAAACCTGTGAC
ATTGCACATTGACTTCTGTGAAGACAATGCTGAAATTGTACCTGCCACAAAATGGGACAGTGCA
GCTATCCAGTACTTTCAGAACATTCTAAGAGCAACTACCCAAGTGGAAGCAAAGCTATGCGCTG
TGGAAGAAGATACTTTTGAGGTTTACCTTTATGCAACAATAAAAAATGAAAAAGTTTGTGTTAA
TGATGATCTAGTTGCAAAGAATTTTGCTTATTATGTGTCACCAATGGGGAACAAAAACCTCAAT
ACTTTGGAGAAACCCAGGCTGAGTCTCAATTCGGTGCCCTGCTCCAGTAAGCTCAGCCCATCAC
TTACTCTGTGGCCAATGCTTCTGCAAGGAAAAGACTGTCAGAGAATGGAAAACTCACAGAGTTT
AGATTTTCTGGCACAGTCTCTCCAGCATACATGGTGTAAGGACGTTGTCGGTGACCTAGGACCA
CGTGCTGCAGTACTGGATAAAGCTGTAAACTATAAGGATTCCTTGACAGATTCGCCTACAATTA
TGTTTGAGAAGAAGCAACAGAGCCTCCCTTTAAAACACATGGATAAGTGCATTGAATCTTCTAT
GTACTGGCCAACAAAAAGAGGCATAACCATATATGCTGATCCAGATATTCCAGCAGCAAGTGTG
TTTAGCCAGAAGCCAAGTGAGAAGCCACTGCGGTTGACTGAAAAGAAAGACTGTGACGAGAAGA
ATGGCTGTGTAAAATTACTACAGTTTCTAAATCCTGATCCTTTGAGAGCTGATGAGATCTCTGA
CCTGCACCAGTTGCAGAAGGTGAAGCTGGGCACATTGCAGCCTGGTGTGGTGCTCCGGAACAGG
ATCGAGCCCTGCCTCACACTGGATAAATCACCTCTGTCAGCAGACCTGAAGAAGGCTCTTCAAA
GAAACAAGTTTCCAGGACCCAGCCACACTGCATCTTACTCTTGGCCTCCTATTGCACGTGGCTG
TGATGTGGTTGTCATTTCTCACTGTGGAAATGACCCCTTGTTGTACCTGCCACCGCTGCTTACG
ATTTTGCAGATGGGGGGCTGCTACAAGTCATTACCAAGTAGAAATGGACCTCTTGCAGTCATCG
TGTGTCCAGGGTGGAAAAAGGCTCAGTTTATTTTTGAGTTGTTGGGAGACTATAGCATGTCCTC
CAGGCCTCTTCATCCTGTGTTATTAACAATTGGACTTCACAAAGACGAAGCCAAAAATATGAAG
CTTCCAAGGGGATGTGATGTGATTGTCACAACGCCACACAGCCTTCTGAGACTTCTCACGTACC
GAAGCTTGTTATTCCTTAGACTCTGCCACCTGGTTCTGGATGAAGTGCACGTACTGTTCTTCGA
AGCTAACGAACAAATGTTTGCCATATTAGATAACTTTAAAAAAAACGTTGAAGTGGAGGAGCGG
GAGTCTGCGCCACACCAGATTGTAGCCGTGGGTGTTCACTGGAACAGACACATAGAGCATCTAG
TCAGAGAGTTCATGAAGGATCCCCACGTCGTGATCACTGCCCTGGAGGAGGCTGCCCTCTACGG
CAGTGTCCAGCAGGTAGTGCATCTGTGCCTGGAGTGCGAGAAAACCTCGACTTTACTCCAAGTT
CTTGACTTTGTTCCAAGTCAGGCCCAGAAGACCTTGATCTTTACCTGCTCCGTAGCAGAGACAG
AGATTGTATGTAAGGTAGTAGAAAGCAATTCAATATTTTGCTTGAAAATGCATAAAGAAATGGC
TTTTAATTTAAAAAGTATTTTGGAACAGTGGAAGAAGAAGTTAAGCTCTGGCTCCCATATTGTG
TTAACCTTAACAGATGACTGCATACCGCTCTTGGCCATCACCGATGCCACATGCGTGGTTCACT
TCAGCTTTCCTTCCTCACCAAAAGTATTTGGTGGACGCCTGTATTGCATGTCTGATCATTTTCA
GAGTTTAACTGAGCAGGGCTCACCTGCAGAGCAGGGAGGTAAGAAAACGAAATCTGTCCTACTG
CTGACGGAGAGGAATGCCAGCCATGCCGTCGGGGTCCTGCGATACTTGGAGCGAGCAGATGCCA
AAATTCCATCGGAGCTGTATGAGTTTACTGCAGGGGTCCTGGAAGCCAAAGAAGATAAGAAAGC
TAGAAGACCTCTCTGTCCATATCTTAAAGCTTTTGGCTTTTGCAAAGACAAAAGGATCTGTCCT
GACCGGCACCACATTAATCCAGAAATGGACATCCCAAGGAAATTATCCAATGAAACTCTACCAG
TGTTTGGGCACATTAGGATAATACCTTTTTACATTTCAAATGCAACCAATTATTTTGGCCGTAT
AATTGATAAACATGTGGATCTTTATGAAACTCTCAATGCAGAAATGAATGAATATTTTAAGGAT
CCCAGTAATAAAACAGCTGCTGAAAAGGTGGAAAATTTGGGGTTGTATGGATTAGAAGAAAAAA
CACTTTTCCAGAGGGTTCAGGTGTTGGAAGCGAGCCAGAAGGAAGACACCTGGGGTTTGGGGAG
TGTCCTGGTGAAATTCATAGATGAAGGCAGGACCAAGCTCATCACAAGAGACCAGCTGCTGCTG
CTCCCAGAGAAGTTTCACACTCTGCCCCCTCAGGCTGTGGAGTTCATTGTTTGTAGGGTTAAAC
CAGCTGACAGTGAAATTGAATGGAACCCAAAGGTTACTAGATACATTCATCATAAAATTATTGG
GAAAATGCATGAGGCCAAGGTGGTATTCGCTTTGGGAAATACCCTTTGGATTGATCCAATGGTG
CATGTTACAAAACTTTCAAATTTAAAAACTTCTGTCATTGATTATAATGTTCGAGCTGAAATTT
TGTCCATGGGAATGGGTATTGATAATTCAGAACATGTAGAACAACTGAAAAAACTACACAAAGA
AGCTAAGCTGCCAGCCTTTGTGGACCTTCCAAGCCAGACTTCGATACCCACAACAGTAGAAGGC
ACCATGTGTTTGCAGGGCACTCAGCGAGGAGACAGAGGTACAGAAAGAGGAGCTGGTTCCCAGG
TGGACCCAGACAACCAAAAGCCTGGAGTTTTATCTGAAGACATTGGCCATGAGACCATTAGCAA
AGCTACACAGCCACATGTGAGAAGCTTTCACCCACAAATAAAGTGGTTCCAAAAGGATGACCAC
ATCATCTTAAAGATAAAAATAAGGAATGTCAAAGACTATAAGTGTAAATTCTTTACAGATAGAG
TCATTTTCAGTGCCTGGGTAGGAGACAAGTTTTACTTGGCTGATATGGAACTGCAAGGTGACAT
AAGGAAAGATGACTGCAAATGCATAATTAAGGATGATGAGCCTCTAATCACACTTGCAAAAGAG
AAACGGGCATGCTGGTGTGGCCTCCTCAAGCAGAGGAATCCTAATGTGGCTTTTGACTTTGACC
ACTGGGAGGAGTGTGAAGAGGACAGCCCTTTCTCCAAGGTCGTAAGTTCTAAAACCCTGTCCTG
CAAAGCGGCAGCACTGGCTGAAAGCAGCAGCTCCTCTTCAGACATGACTGACGGGAGTGAGAGC
GAATGAGGCCGTGCATGGACCAACGCCAGCGAGAAGACAGACAACTGCACACACAGTCACGGCC
AACCCTTTTCACCTGGAGAGTGACTTGTCACTGTCATTGTGTGGCACTGCCATGGATGATGATG
AGAAGTTCTTAATTGATTTAAAGTGGGTAGACAAGCCAAGTGATAGGTTATGATGAGATTGTCA
AAGGAGAGTCCACAATCAGGGACACAGAAAGTTAGGGACATTTTTAATTCTAGCCCTCAGGAGA
TTGAGGCAGGAGGATTACAAGTTTGAGGGCAGCCAGGACTATATAGGGAGGTTCTGTTTCCAAA
AATGTGTTTTCCATCAAAGGTCCTGTGTAACCCAAGTGTATGCAGTGTGTCCTCTCACTGACTC
TCTTAGCTCATCCTGACTACTGATCGTAGAGACGGAGAGCAAACCCTAACACTAGGTAGTAGAT
TGATCTTGTAAGGAGTTAGTCTACTCAATTGCCGTGTAGACCCGTGTGTGGCACTGCTTAAAAC
TTGTCTCTCACGCAGAAACTGGAGAGTCTGTCTTACACTTTTACACCCAGCCGGACTTGCCAGC
CCCTTTCACCACAGGACCTAAATGCCCAACTGCGCCATACAAAAACTCCCTAAATTTTCCTGGC
TTTGACAGCTACTAAGAGATACAAATTGACTTCTTTTCCCCAAAGGCAAGATAGATTTGCCTCA
GCTCAGTGGAACCCTGGGCAGAACTTTCTTTCAGAAATGCTTATAGGACTTACTAACCTTCAGA
CTCCCCGGATGTGGTGAGTCCTGAGAACACTAATGGCAAATCTGAATGAATGCAGCTGTAACAC
CCCGGTTTGGGGACAGGGTGTGTGGTTATCGTTTAAATGTCACTGACACAGTTGGGAAGGTGAG
TGTGGGAACTTCACAACCCAGTGTCTTAGCATCTCCGCATCAGTGTCCCTCAAGTGAGAAGGGA
CATGGATGGAGCCGCACTGTTGAGGGACGGACTCCCCTAAGCATATCCTATGCTCTCCATATCA
GAAAGTACCGATATTCAGAGATGCGCCCATGCCTGTCATTCCAGCATATGAGAGGTGGAGACAG
GAGGACCAAGAAGTGTCAGGCCAGCCTGGGCTACATAAGAACTAGTGTCAAAACCTGAAGAAAA
AAGAAAAAGAAACAGAGATGTCAAGAGTTCTGTAACCCCAAGAGTTAGCCGTTGCACAGGCGAG
GAGGCAACGTCTCCTGGCTTTCTGTGCCAGAGGGCTGGGCCCACACTGGTTCTTGGTTTTCTTA
TCTGTAAAATAAGACCTGAGCACATTCAGCCCACGAGAGTCCAGGGTGTTGTGGGGTGGGCACC
TGGCTTTCACAGTGACTGTGAGGGGGTCAGACCTGTGCCAGGAGTCAGAGACTGCCTAGCCTGG
GCCGCTACCAGGAAGACATCCTTTTTGCTGCTATGACTCTTGGGTTGGTAGTCCCATATCAGAG
GGCCATAATGCAAAGTGGTTCTTGACAAAGCAGAAAGCATGGTGTCTTGCTGGAACATTTCAAC
TGTGAGACTGGTCCATTTGTACAGATGCAGGTCCACCCAGGTGGTGGAGGGCTGTGGTGACACT
GAACACTGAGTTGAGTGCAAGTGGCAGACTGTCTCAGAAGACCCAGCGAAATGGGACACAGCTC
TGTTTACATCATTTTTTTTCAGGTGGTCAGATTTTCCAATACTTAACCCTCTGAGCAAAATCTT
GTAGCACATGGGAGGCTATGCTGACAGTCAGCTATTGCCTTCTGTATTATACTAAACTCTACTG
ATTGAGGTACACTTCTGAAATATGACATGGAAATACTTGAAGAGTTAGTGCTCTAGAATTGCTC
CCATATGATATGAGCATCTTTGTGGTGGATTATCAATAAAGCTCCAGTGTAATGTTGGTCACAG
GTTTTTGTTCTGCATCGAATGCAAAGGAACATTCACACTTCTAGAAAGTAAAATGCCAGCAAAG
GCAGTGAGTTGGTTGTGCGTGATGCTGA

hide sequence

RefSeq Acc Id:

XM_039100861 ⟹ XP_038956789

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,270,280 - 97,342,630 (-)	NCBI
mRatBN7.2	1	88,133,273 - 88,205,729 (-)	NCBI

RefSeq Acc Id:

XM_039100862 ⟹ XP_038956790

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,270,280 - 97,334,376 (-)	NCBI
mRatBN7.2	1	88,133,272 - 88,197,478 (-)	NCBI

RefSeq Acc Id:

XM_039100863 ⟹ XP_038956791

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,270,280 - 97,318,838 (-)	NCBI
mRatBN7.2	1	88,133,272 - 88,181,941 (-)	NCBI

RefSeq Acc Id:

XM_039100864 ⟹ XP_038956792

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,270,280 - 97,294,040 (-)	NCBI
mRatBN7.2	1	88,133,271 - 88,157,138 (-)	NCBI

RefSeq Acc Id:

XM_063277978 ⟹ XP_063134048

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,270,280 - 97,342,630 (-)	NCBI

RefSeq Acc Id:

XM_063277999 ⟹ XP_063134069

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	1	97,270,280 - 97,342,637 (-)	NCBI

Protein Sequences


Protein RefSeqs	NP_001419536	(Get FASTA)	NCBI Sequence Viewer
	NP_001419537	(Get FASTA)	NCBI Sequence Viewer
	XP_017445552	(Get FASTA)	NCBI Sequence Viewer
	XP_017445553	(Get FASTA)	NCBI Sequence Viewer
	XP_038956789	(Get FASTA)	NCBI Sequence Viewer
	XP_038956790	(Get FASTA)	NCBI Sequence Viewer
	XP_038956791	(Get FASTA)	NCBI Sequence Viewer
	XP_038956792	(Get FASTA)	NCBI Sequence Viewer
	XP_063134048	(Get FASTA)	NCBI Sequence Viewer
	XP_063134069	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000017021
	ENSRNOP00000017021.5
	ENSRNOP00000080995
	ENSRNOP00000080995.1
	ENSRNOP00000096443.2
	ENSRNOP00000099125.1
	ENSRNOP00000102057.1
	ENSRNOP00000112331.1

RefSeq Acc Id:

XP_017445552 ⟸ XM_017590063

- Peptide Label:

isoform X2

- Sequence:

show sequence

MLEVLVLKIEDPGCFWVIIKGCSHFLEQEVDYQKLNSAMNDFYNSMCQDIEIKPLMLEEGQVCV
VYCQELKCWCRAVIKSIISSADHYLAECFLVDFAKYIPVKSKNIRVAVESFMQLPYRAKKFRLY
CTKPVTLHIDFCEDNAEIVPATKWDSAAIQYFQNILRATTQVEAKLCAVEEDTFEVYLYATIKN
EKVCVNDDLVAKNFAYYVSPMGNKNLNTLEKPRLSLNSVPCSSKLSPSLTLWPMLLQGKDCQRM
ENSQSLDFLAQSLQHTWCKDVVGDLGPRAAVLDKAVNYKDSLTDSPTIMFEKKQQSLPLKHMDK
CIESSMYWPTKRGITIYADPDIPAASVFSQKPSEKPLRLTEKKDCDEKNGCVKLLQFLNPDPLR
ADEISDLHQLQKVKLGTLQPGVVLRNRIEPCLTLDKSPLSADLKKALQRNKFPGPSHTASYSWP
PIARGCDVVVISHCGNDPLLYLPPLLTILQMGGCYKSLPSRNGPLAVIVCPGWKKAQFIFELLG
DYSMSSRPLHPVLLTIGLHKDEAKNMKLPRGCDVIVTTPHSLLRLLTYRSLLFLRLCHLVLDEV
HVLFFEANEQMFAILDNFKKNVEVEERESAPHQIVAVGVHWNRHIEHLVREFMKDPHVVITALE
EAALYGSVQQVVHLCLECEKTSTLLQVLDFVPSQAQKTLIFTCSVAETEIVCKVVESNSIFCLK
MHKEMAFNLKSILEQWKKKLSSGSHIVLTLTDDCIPLLAITDATCVVHFSFPSSPKVFGGRLYC
MSDHFQSLTEQGSPAEQGGKKTKSVLLLTERNASHAVGVLRYLERADAKIPSELYEFTAGVLEA
KEDKKARRPLCPYLKAFGFCKDKRICPDRHHINPEMDIPRKLSNETLPVFGHIRIIPFYISNAT
NYFGRIIDKHVDLYETLNAEMNEYFKDPSNKTAAEKVENLGLYGLEEKTLFQRVQVLEASQKED
TWGLGSVLVKFIDEGRTKLITRDQLLLLPEKFHTLPPQAVEFIVCRVKPADSEIEWNPKVTRYI
HHKIIGKMHEAKVVFALGNTLWIDPMVHVTKLSNLKTSVIDYNVRAEILSMGMGIDNSEHVEQL
KKLHKEAKLPAFVDLPSQTSIPTTVEGTMCLQGTQRGDRGTERGAGSQVDPDNQKPGVLSEDIG
HETISKATQPHVRSFHPQIKWFQKDDHIILKIKIRNVKDYKCKFFTDRVIFSAWVGDKFYLADM
ELQGDIRKDDCKCIIKDDEPLITLAKEKRACWCGLLKQRNPNVAFDFDHWEECEEDSPFSKVVS
SKTLSCKAAALAESSSSSSDMTDGSESE

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RefSeq Acc Id:	XP_017445553 ⟸ XM_017590064
- Peptide Label:	isoform X3
- UniProtKB:	A0A8I5ZR00 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNDFYNSMCQDIEIKPLMLEEGQVCVVYCQELKCWCRAVIKSIISSADHYLAECFLVDFAKYIP VKSKNIRVAVESFMQLPYRAKKFRLYCTKPVTLHIDFCEDNAEIVPATKWDSAAIQYFQNILRA TTQVEAKLCAVEEDTFEVYLYATIKNEKVCVNDDLVAKNFAYYVSPMGNKNLNTLEKPRLSLNS VPCSSKLSPSLTLWPMLLQGKDCQRMENSQSLDFLAQSLQHTWCKDVVGDLGPRAAVLDKAVNY KDSLTDSPTIMFEKKQQSLPLKHMDKCIESSMYWPTKRGITIYADPDIPAASVFSQKPSEKPLR LTEKKDCDEKNGCVKLLQFLNPDPLRADEISDLHQLQKVKLGTLQPGVVLRNRIEPCLTLDKSP LSADLKKALQRNKFPGPSHTASYSWPPIARGCDVVVISHCGNDPLLYLPPLLTILQMGGCYKSL PSRNGPLAVIVCPGWKKAQFIFELLGDYSMSSRPLHPVLLTIGLHKDEAKNMKLPRGCDVIVTT PHSLLRLLTYRSLLFLRLCHLVLDEVHVLFFEANEQMFAILDNFKKNVEVEERESAPHQIVAVG VHWNRHIEHLVREFMKDPHVVITALEEAALYGSVQQVVHLCLECEKTSTLLQVLDFVPSQAQKT LIFTCSVAETEIVCKVVESNSIFCLKMHKEMAFNLKSILEQWKKKLSSGSHIVLTLTDDCIPLL AITDATCVVHFSFPSSPKVFGGRLYCMSDHFQSLTEQGSPAEQGGKKTKSVLLLTERNASHAVG VLRYLERADAKIPSELYEFTAGVLEAKEDKKARRPLCPYLKAFGFCKDKRICPDRHHINPEMDI PRKLSNETLPVFGHIRIIPFYISNATNYFGRIIDKHVDLYETLNAEMNEYFKDPSNKTAAEKVE NLGLYGLEEKTLFQRVQVLEASQKEDTWGLGSVLVKFIDEGRTKLITRDQLLLLPEKFHTLPPQ AVEFIVCRVKPADSEIEWNPKVTRYIHHKIIGKMHEAKVVFALGNTLWIDPMVHVTKLSNLKTS VIDYNVRAEILSMGMGIDNSEHVEQLKKLHKEAKLPAFVDLPSQTSIPTTVEGTMCLQGTQRGD RGTERGAGSQVDPDNQKPGVLSEDIGHETISKATQPHVRSFHPQIKWFQKDDHIILKIKIRNVK DYKCKFFTDRVIFSAWVGDKFYLADMELQGDIRKDDCKCIIKDDEPLITLAKEKRACWCGLLKQ RNPNVAFDFDHWEECEEDSPFSKVVSSKTLSCKAAALAESSSSSSDMTDGSESE hide sequence

Ensembl Acc Id:

ENSRNOP00000017021 ⟸ ENSRNOT00000017021

RefSeq Acc Id:	XP_038956792 ⟸ XM_039100864
- Peptide Label:	isoform X7

RefSeq Acc Id:	XP_038956790 ⟸ XM_039100862
- Peptide Label:	isoform X5
- UniProtKB:	A0A8I5ZR00 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_038956791 ⟸ XM_039100863
- Peptide Label:	isoform X6

RefSeq Acc Id:	XP_038956789 ⟸ XM_039100861
- Peptide Label:	isoform X4
- UniProtKB:	A0A8I5ZR00 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000080995 ⟸ ENSRNOT00000113448

Ensembl Acc Id:

ENSRNOP00000096443 ⟸ ENSRNOT00000108717

RefSeq Acc Id:	XP_063134069 ⟸ XM_063277999
- Peptide Label:	isoform X8
- UniProtKB:	A0A8I5ZR00 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063134048 ⟸ XM_063277978
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I5ZR00 (UniProtKB/TrEMBL)

Ensembl Acc Id:

ENSRNOP00000102057 ⟸ ENSRNOT00000138655

Ensembl Acc Id:

ENSRNOP00000099125 ⟸ ENSRNOT00000172090

Ensembl Acc Id:

ENSRNOP00000112331 ⟸ ENSRNOT00000146255

Protein Domains

CS Tudor

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-F1LTR3-F1-model_v2	AlphaFold	F1LTR3	1-1308	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562792	AgrOrtholog
BioCyc Gene	G2FUF-59971	BioCyc
Ensembl Genes	ENSRNOG00000012719	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000017021	ENTREZGENE
	ENSRNOT00000017021.8	UniProtKB/TrEMBL
	ENSRNOT00000108717.2	UniProtKB/TrEMBL
	ENSRNOT00000113448	ENTREZGENE
	ENSRNOT00000113448.2	UniProtKB/TrEMBL
	ENSRNOT00000138655.1	UniProtKB/TrEMBL
	ENSRNOT00000146255.1	UniProtKB/TrEMBL
	ENSRNOT00000172090.1	UniProtKB/TrEMBL
Gene3D-CATH	2.30.30.140	UniProtKB/TrEMBL
	2.40.50.90	UniProtKB/TrEMBL
	2.60.40.790	UniProtKB/TrEMBL
	3.40.50.300	UniProtKB/TrEMBL
InterPro	CS-like_domain	UniProtKB/TrEMBL
	DNA/RNA_helicase_DEAD/DEAH_N	UniProtKB/TrEMBL
	HSP20-like_chaperone	UniProtKB/TrEMBL
	P-loop_NTPase	UniProtKB/TrEMBL
	Staphylococcal_nuclease/TUDOR	UniProtKB/TrEMBL
	Tudor	UniProtKB/TrEMBL
	Tudor_TDRD12_rpt1	UniProtKB/TrEMBL
KEGG Report	rno:689639	UniProtKB/TrEMBL
NCBI Gene	Tdrd12	ENTREZGENE
PANTHER	ATP-DEPENDENT RNA HELICASE TDRD12-RELATED	UniProtKB/TrEMBL
	UNCHARACTERIZED	UniProtKB/TrEMBL
Pfam	DEAD	UniProtKB/TrEMBL
	PF04969	UniProtKB/TrEMBL
	TUDOR	UniProtKB/TrEMBL
PhenoGen	Tdrd12	PhenoGen
PROSITE	PS51203	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000012719	RatGTEx
Superfamily-SCOP	HSP20_chap	UniProtKB/TrEMBL
	SSF52540	UniProtKB/TrEMBL
	Tudor/PWWP/MBT	UniProtKB/TrEMBL
UniProt	A0A8I5ZR00	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AQS7	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0L487_RAT	UniProtKB/TrEMBL
	A0ABK0LM05_RAT	UniProtKB/TrEMBL
	A0ABK0LMW8_RAT	UniProtKB/TrEMBL
	A6JAB5	ENTREZGENE, UniProtKB/TrEMBL
	F1LTR3	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2011-09-08	Tdrd12	tudor domain containing 12	LOC689639	similar to CG11133-PA	Data merged from RGD:1589939	737654	APPROVED
2008-03-19	Tdrd12	tudor domain containing 12	RGD1562792_predicted	similar to RIKEN cDNA 2410004F06 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-11-20	LOC689639	similar to CG11133-PA			Symbol and Name status set to provisional	70820	PROVISIONAL
2006-03-07	RGD1562792_predicted	similar to RIKEN cDNA 2410004F06 (predicted)	LOC292813	similar to RIKEN cDNA 2410004F06	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC292813	similar to RIKEN cDNA 2410004F06			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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Imported Disease Annotations - ClinVar