Ykt6l1 (YKT6 v-SNARE like 1) - Rat Genome Database

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Gene: Ykt6l1 (YKT6 v-SNARE like 1) Rattus norvegicus
Analyze
Symbol: Ykt6l1
Name: YKT6 v-SNARE like 1
RGD ID: 1562775
Description:
Type: protein-coding
RefSeq Status: MODEL
Previously known as: LOC503440; RGD1562775; similar to SNARE protein Ykt6; synaptobrevin homolog YKT6-like
Latest Assembly: mRatBN7.2 - mRatBN7.2 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X45,224,082 - 45,224,426 (+)NCBIGRCr8
mRatBN7.2X41,345,581 - 41,346,225 (+)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X44,503,856 - 44,601,823 (+)NCBIRnor6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X44,900,591 - 44,902,515 (+)NCBIRnor5.0Rnor_5.0rn5Rnor5.0
RGSC_v3.4X63,002,055 - 63,002,743 (+)NCBIRGSC3.4RGSC_v3.4rn4RGSC3.4
CeleraX42,002,332 - 42,004,256 (+)NCBICelera
Cytogenetic MapXq21NCBI
JBrowse: View Region in Genome Browser (JBrowse)
Model


References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline

Genomics

Variants

.
Variants in Ykt6l1
5 total Variants

QTLs in Region (mRatBN7.2)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
731181Uae27Urinary albumin excretion QTL 272.70.0059urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)X143491017Rat
1298071Edpm12Estrogen-dependent pituitary mass QTL 123.2pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)X292789847927898Rat
10755455Coatc13Coat color QTL 130coat/hair pigmentation trait (VT:0010463)pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)7440600049406000Rat
631666Iddm5Insulin dependent diabetes mellitus QTL 5blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X449454949494549Rat
61430Cia18Collagen induced arthritis QTL 183.1joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)X14843113120568734Rat
71116Niddm16Non-insulin dependent diabetes mellitus QTL 167.81blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)X1529780260297802Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between time of physical contact/close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X41052407146860749Rat
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX41304447112935181Rat

Markers in Region
DXMit5  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X41,203,380 - 41,203,591 (+)MAPPERmRatBN7.2
Rnor_6.0X44,468,090 - 44,468,300NCBIRnor6.0
Rnor_5.0X44,765,137 - 44,765,347UniSTSRnor5.0
RGSC_v3.4X62,894,095 - 62,894,306RGDRGSC3.4
RGSC_v3.4X62,894,096 - 62,894,306UniSTSRGSC3.4
RGSC_v3.1X62,947,565 - 62,947,775RGD
CeleraX41,864,292 - 41,864,502UniSTS
RH 3.4 MapX580.3RGD
RH 3.4 MapX580.3UniSTS
SHRSP x BN MapX14.89UniSTS
SHRSP x BN MapX14.89RGD
FHH x ACI MapX16.69RGD
Cytogenetic MapXq22UniSTS
DXRat67  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X41,304,447 - 41,304,683 (+)MAPPERmRatBN7.2
Rnor_6.0X44,557,974 - 44,558,205NCBIRnor6.0
Rnor_5.0X44,859,631 - 44,859,862UniSTSRnor5.0
RGSC_v3.4X62,951,573 - 62,951,804UniSTSRGSC3.4
RGSC_v3.4X62,951,569 - 62,952,076RGDRGSC3.4
RGSC_v3.1X63,005,042 - 63,005,273RGD
CeleraX41,962,987 - 41,963,218UniSTS
RH 3.4 MapX580.3RGD
RH 3.4 MapX580.3UniSTS
RH 2.0 Map21471.6RGD
SHRSP x BN MapX14.89RGD
FHH x ACI MapX16.69RGD
Cytogenetic MapXq22UniSTS
DXRat59  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X41,271,109 - 41,271,247 (+)MAPPERmRatBN7.2
Rnor_6.0X44,529,486 - 44,529,623NCBIRnor6.0
Rnor_5.0X44,831,143 - 44,831,280UniSTSRnor5.0
CeleraX41,930,623 - 41,930,760UniSTS
RH 3.4 MapX580.7UniSTS
RH 3.4 MapX580.7RGD
RH 2.0 Map21473.9RGD
SHRSP x BN MapX14.89RGD
FHH x ACI MapX16.69RGD
Cytogenetic MapXq22UniSTS
DXRat112  
Rat AssemblyChrPosition (strand)SourceJBrowse
Rnor_6.0X44,526,551 - 44,526,751NCBIRnor6.0
CeleraX41,927,561 - 41,927,757UniSTS
FHH x ACI MapX16.76RGD
FHH x ACI MapX16.76UniSTS
Cytogenetic MapXq22UniSTS
DXRat146  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X41,203,380 - 41,203,580 (+)MAPPERmRatBN7.2
Rnor_6.0X44,468,090 - 44,468,289NCBIRnor6.0
Rnor_5.0X44,765,137 - 44,765,336UniSTSRnor5.0
RGSC_v3.4X62,894,095 - 62,894,295RGDRGSC3.4
RGSC_v3.4X62,894,096 - 62,894,295UniSTSRGSC3.4
CeleraX41,864,292 - 41,864,491UniSTS
FHH x ACI MapX16.76UniSTS
FHH x ACI MapX16.76RGD
Cytogenetic MapXq22UniSTS
AU047290  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2X41,210,426 - 41,210,626 (+)MAPPERmRatBN7.2
Rnor_6.0X44,475,138 - 44,475,335NCBIRnor6.0
Rnor_5.0X44,772,185 - 44,772,382UniSTSRnor5.0
RGSC_v3.4X62,901,142 - 62,901,339UniSTSRGSC3.4
CeleraX41,871,338 - 41,871,535UniSTS
Cytogenetic MapXq22UniSTS


Expression


Sequence

Nucleotide Sequences
RefSeq Transcripts XM_039100520 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide JAXUCZ010000021 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Reference Sequences
RefSeq Acc Id: XM_039100520   ⟹   XP_038956448
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X45,224,082 - 45,224,426 (+)NCBI
mRatBN7.2X41,345,581 - 41,346,225 (+)NCBI
Protein Sequences
Protein RefSeqs XP_038956448 (Get FASTA)   NCBI Sequence Viewer  
Reference Protein Sequences
RefSeq Acc Id: XP_038956448   ⟸   XM_039100520
- UniProtKB: A6IPS4 (UniProtKB/TrEMBL)
Protein Domains
Longin


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2416 BioCyc
Gene3D-CATH Longin domain UniProtKB/TrEMBL
InterPro Longin-like_dom_sf UniProtKB/TrEMBL
  Longin_dom UniProtKB/TrEMBL
NCBI Gene 503440 ENTREZGENE
PANTHER SYNAPTOBREVIN HOMOLOG YKT6 UniProtKB/TrEMBL
  SYNAPTOBREVIN HOMOLOG YKT6 UniProtKB/TrEMBL
Pfam Longin UniProtKB/TrEMBL
PhenoGen Ykt6l1 PhenoGen
PROSITE LONGIN UniProtKB/TrEMBL
SMART Longin UniProtKB/TrEMBL
Superfamily-SCOP SNARE-like UniProtKB/TrEMBL
UniProt A6IPS4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Ykt6l1  YKT6 v-SNARE like 1  RGD1562775  similar to SNARE protein Ykt6  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1562775  similar to SNARE protein Ykt6   RGD1562775_predicted  similar to SNARE protein Ykt6 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562775_predicted  similar to SNARE protein Ykt6 (predicted)  LOC503440  similar to SNARE protein Ykt6  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC503440  similar to SNARE protein Ykt6      Symbol and Name status set to provisional 70820 PROVISIONAL