Lypd6b (Ly6/Plaur domain containing 6B) - Rat Genome Database

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Gene: Lypd6b (Ly6/Plaur domain containing 6B) Rattus norvegicus
Analyze
Symbol: Lypd6b
Name: Ly6/Plaur domain containing 6B
RGD ID: 1562767
Description: Predicted to enable acetylcholine receptor regulator activity. Predicted to be located in plasma membrane and side of membrane. Orthologous to human LYPD6B (LY6/PLAUR domain containing 6B); INTERACTS WITH 2,2',4,4'-Tetrabromodiphenyl ether; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC362133; ly6/PLAUR domain-containing protein 6B; RGD1562767; similar to RIKEN cDNA 2310010M24
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8354,608,320 - 54,769,974 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl354,757,444 - 54,769,974 (+)EnsemblGRCr8
mRatBN7.2334,199,101 - 34,360,770 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl334,199,599 - 34,360,770 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx337,569,714 - 37,745,286 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0346,154,432 - 46,329,986 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0343,966,693 - 44,131,818 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0335,271,785 - 35,437,296 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl335,271,786 - 35,437,296 (+)Ensemblrn6Rnor6.0
Rnor_5.0340,397,603 - 40,555,551 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4330,849,359 - 30,869,056 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera332,384,248 - 32,545,513 (+)NCBICelera
Cytogenetic Map3q12NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:26586467  


Genomics

Comparative Map Data
Lypd6b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8354,608,320 - 54,769,974 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl354,757,444 - 54,769,974 (+)EnsemblGRCr8
mRatBN7.2334,199,101 - 34,360,770 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl334,199,599 - 34,360,770 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx337,569,714 - 37,745,286 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0346,154,432 - 46,329,986 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0343,966,693 - 44,131,818 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0335,271,785 - 35,437,296 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl335,271,786 - 35,437,296 (+)Ensemblrn6Rnor6.0
Rnor_5.0340,397,603 - 40,555,551 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4330,849,359 - 30,869,056 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera332,384,248 - 32,545,513 (+)NCBICelera
Cytogenetic Map3q12NCBI
LYPD6B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382149,038,699 - 149,215,262 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2149,037,975 - 149,215,262 (+)Ensemblhg38GRCh38
GRCh372149,895,213 - 150,071,776 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 362149,603,227 - 149,780,018 (+)NCBIBuild 36Build 36hg18NCBI36
Celera2143,508,885 - 143,685,705 (+)NCBICelera
Cytogenetic Map2q23.2NCBI
HuRef2141,793,209 - 141,970,636 (+)NCBIHuRef
CHM1_12149,900,822 - 150,077,602 (+)NCBICHM1_1
T2T-CHM13v2.02149,489,053 - 149,665,643 (+)NCBIT2T-CHM13v2.0
Lypd6b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39249,677,380 - 49,838,861 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl249,677,700 - 49,838,861 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38249,787,340 - 49,948,849 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl249,787,688 - 49,948,849 (+)Ensemblmm10GRCm38
MGSCv37249,643,206 - 49,804,366 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36249,609,695 - 49,770,855 (+)NCBIMGSCv36mm8
Celera251,460,729 - 51,622,118 (+)NCBICelera
Cytogenetic Map2C1.1NCBI
cM Map228.74NCBI
Lypd6b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495544015,014,264 - 15,027,648 (+)Ensembl
ChiLan1.0NW_00495544014,865,736 - 15,028,655 (+)NCBIChiLan1.0ChiLan1.0
LYPD6B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21325,713,273 - 25,890,555 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12B25,728,237 - 25,905,525 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02B10,647,871 - 10,825,062 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12B153,478,374 - 153,575,462 (+)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2B153,479,334 - 153,576,190 (+)EnsemblpanPan2panpan1.1
LYPD6B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11950,692,220 - 50,855,061 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
Dog10K_Boxer_Tasha1950,813,689 - 50,978,961 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01952,164,791 - 52,330,414 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1952,246,558 - 52,329,581 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11950,807,650 - 50,973,190 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01950,942,420 - 51,108,413 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01952,341,463 - 52,507,252 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lypd6b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024405303113,372,508 - 113,518,367 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493646928,100,477 - 28,119,342 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493646928,098,841 - 28,245,200 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LYPD6B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl152,952,546 - 2,972,920 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1152,957,051 - 3,179,409 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2152,443,118 - 2,477,085 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LYPD6B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.11034,511,293 - 34,644,953 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl1034,634,763 - 34,644,939 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666040164,885,952 - 165,010,527 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lypd6b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046248661,940,123 - 1,959,344 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046248661,708,769 - 1,960,396 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Lypd6b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1527,759,257 - 27,806,085 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lypd6b
552 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:169
Count of miRNA genes:121
Interacting mature miRNAs:147
Transcripts:ENSRNOT00000065989
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300178Hrtrt4Heart rate QTL 43.74heart pumping trait (VT:2000009)heart rate (CMO:0000002)351490129111359995Rat
70216Cm14Cardiac mass QTL 142.1heart mass (VT:0007028)heart wet weight (CMO:0000069)351581665184004958Rat
1354589Bw31Body weight QTL 313.3body mass (VT:0001259)body weight (CMO:0000012)35365182698651826Rat
1298073Cm13Cardiac mass QTL 132.5heart mass (VT:0007028)heart wet weight (CMO:0000069)34542360958601291Rat
2303593Gluco46Glucose level QTL 463blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)34887661993876619Rat
1354590Despr11Despair related QTL 110.000031locomotor behavior trait (VT:0001392)amount of experiment time spent in a discrete space in an experimental apparatus (CMO:0000958)34887661993876619Rat
634306Bp140Blood pressure QTL 1403.30.0013arterial blood pressure trait (VT:2000000)body weight (CMO:0000012)33777225855937853Rat
10401810Kidm53Kidney mass QTL 53kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)32862533967641995Rat
2298542Neuinf11Neuroinflammation QTL 113.9nervous system integrity trait (VT:0010566)spinal cord complement component 1, q subcomponent, B chain mRNA level (CMO:0002126)33540319997383526Rat
631832Sach1Saccharin preference QTL 12.70.02consumption behavior trait (VT:0002069)calculated saccharin drink intake volume (CMO:0001600)34790417292904172Rat
737818Hcar12Hepatocarcinoma resistance QTL 122.6liver integrity trait (VT:0010547)volume of individual liver tumorous lesion (CMO:0001078)349872657138829559Rat
2313079Bss73Bone structure and strength QTL 731.5tibia size trait (VT:0100001)tibia midshaft cross-sectional area (CMO:0001717)34790417270710963Rat
631647Bp122Blood pressure QTL 1226.2arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)35109256196092561Rat
2313076Bss74Bone structure and strength QTL 7420.0001tibia strength trait (VT:1000284)tibia total energy absorbed before break (CMO:0001736)34790417270710963Rat
631568Bp92Blood pressure QTL 922.20.005arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)31527234860272348Rat
1300169Bp177Blood pressure QTL 1772.96arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)33642511681425116Rat
9590286Uminl1Urine mineral level QTL 13.50.001urine mineral amount (VT:0015086)urine electrolyte level (CMO:0000593)34865774493657744Rat
4889966Bss95Bone structure and strength QTL 954.4tibia area (VT:1000281)tibia-fibula cross-sectional area (CMO:0001718)33779691982796919Rat
2313093Bmd77Bone mineral density QTL 772.20.0001tibia mineral mass (VT:1000283)compact volumetric bone mineral density (CMO:0001730)34790417270710963Rat
12879852Cm93Cardiac mass QTL 930.001heart right ventricle mass (VT:0007033)heart right ventricle weight to body weight ratio (CMO:0000914)33870893167641995Rat
12879853Am5Aortic mass QTL 50.001aorta mass (VT:0002845)aorta weight to aorta length to body weight ratio (CMO:0002722)33870893167641995Rat
12879854Kidm63Kidney mass QTL 630.001kidney mass (VT:0002707)both kidneys wet weight to body weight ratio (CMO:0000340)33870893167641995Rat
9590136Scort3Serum corticosterone level QTL 323.370.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)34865774493657744Rat
61419Cia11Collagen induced arthritis QTL 115.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)35076614595766145Rat
61356Bp37Blood pressure QTL 373blood pressure trait (VT:0000183)systolic blood pressure (CMO:0000004)35109256196092561Rat
1358905Hrtrt17Heart rate QTL 175.90.000014heart pumping trait (VT:2000009)heart rate (CMO:0000002)336721849110333156Rat
12879849Bw180Body weight QTL 1800.037body mass (VT:0001259)body weight (CMO:0000012)33870893167641995Rat
1558650Cm48Cardiac mass QTL 4840.0001heart mass (VT:0007028)heart weight to body weight ratio (CMO:0000074)35076614595766145Rat
12879850Cm91Cardiac mass QTL 910.001heart mass (VT:0007028)heart wet weight to body weight ratio (CMO:0002408)33870893167641995Rat
2313101Bmd76Bone mineral density QTL 763.60.0001tibia mineral mass (VT:1000283)total volumetric bone mineral density (CMO:0001728)34790417270710963Rat
12879851Cm92Cardiac mass QTL 920.001heart left ventricle mass (VT:0007031)heart left ventricle weight to body weight ratio (CMO:0000530)33870893167641995Rat
731172Bp151Blood pressure QTL 1510.04arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893167641995Rat
8694196Abfw2Abdominal fat weight QTL 216.580.001visceral adipose mass (VT:0010063)abdominal fat pad weight to body weight ratio (CMO:0000095)34865774493657744Rat
1358885Bp251Blood pressure QTL 2513.8arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)31141509147Rat
1354597Kidm13Kidney mass QTL 132.9kidney mass (VT:0002707)right kidney wet weight (CMO:0000082)342158111124558371Rat
2325840Bp345Blood pressure QTL 3450.001arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)33870893183708931Rat
8552950Pigfal12Plasma insulin-like growth factor 1 level QTL 127.3blood insulin-like growth factor amount (VT:0010479)plasma insulin-like growth factor 1 level (CMO:0001299)34865774493657744Rat
631676Cm8Cardiac mass QTL 87.030.0001aorta mass (VT:0002845)aorta weight (CMO:0000076)33736373482363734Rat
2290452Scl56Serum cholesterol level QTL 562.26blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)33610140381101403Rat
8694386Bw159Body weight QTL 1594.520.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)34865774493657744Rat
1354604Bw36Body weight QTL 362.9body mass (VT:0001259)body weight (CMO:0000012)342158111124558371Rat
2313049Bss72Bone structure and strength QTL 722.60.0001tibia area (VT:1000281)tibia midshaft cross-sectional area (CMO:0001717)34790417270710963Rat
2312664Scl62Serum cholesterol level QTL 620.05blood cholesterol amount (VT:0000180)serum total cholesterol level (CMO:0000363)33779691959119581Rat
1358888Bp264Blood pressure QTL 2644.43arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)35675975141509147Rat

Markers in Region
D3Rat47  
Rat AssemblyChrPosition (strand)SourceJBrowse
RGSC_v3.4330,835,250 - 30,835,368UniSTSRGSC3.4
RGSC_v3.4330,835,249 - 30,835,368RGDRGSC3.4
Celera332,512,845 - 32,512,963UniSTS
RGSC_v3.1330,731,621 - 30,731,740RGD
RH 3.4 Map3511.02RGD
RH 3.4 Map3511.02UniSTS
SHRSP x BN Map316.3599UniSTS
SHRSP x BN Map316.3599RGD
Cytogenetic Map3q12UniSTS
D3Got206  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2334,197,864 - 34,198,024 (+)MAPPERmRatBN7.2
Rnor_6.0335,270,054 - 35,270,211NCBIRnor6.0
Rnor_5.0340,396,403 - 40,396,560UniSTSRnor5.0
RGSC_v3.4330,771,423 - 30,771,580UniSTSRGSC3.4
Celera332,382,555 - 32,382,673UniSTS
Cytogenetic Map3q12UniSTS
RH141888  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2334,307,577 - 34,307,794 (+)MAPPERmRatBN7.2
Rnor_6.0335,383,246 - 35,383,462NCBIRnor6.0
Rnor_5.0340,503,785 - 40,504,001UniSTSRnor5.0
Celera332,491,894 - 32,492,110UniSTS
RH 3.4 Map3413.32UniSTS
Cytogenetic Map3q12UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 8 37 137 46 45 14 23 14 6 207 90 10 111 80 90 31 11 11

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001395757 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761763 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761768 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008761769 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591885 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591887 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591888 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591889 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591890 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017591891 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105382 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105384 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105387 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039105390 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284108 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284109 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063284110 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473983 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000065989   ⟹   ENSRNOP00000063299
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl354,757,444 - 54,769,974 (+)Ensembl
mRatBN7.2 Ensembl334,199,599 - 34,360,770 (+)Ensembl
Rnor_6.0 Ensembl335,271,786 - 35,437,296 (+)Ensembl
RefSeq Acc Id: NM_001395757   ⟹   NP_001382686
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,608,320 - 54,769,974 (+)NCBI
mRatBN7.2334,199,105 - 34,360,770 (+)NCBI
RefSeq Acc Id: XM_039105382   ⟹   XP_038961310
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,608,340 - 54,769,970 (+)NCBI
mRatBN7.2334,199,103 - 34,360,770 (+)NCBI
RefSeq Acc Id: XM_039105384   ⟹   XP_038961312
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,608,343 - 54,769,970 (+)NCBI
mRatBN7.2334,199,105 - 34,360,770 (+)NCBI
RefSeq Acc Id: XM_039105387   ⟹   XP_038961315
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,608,343 - 54,769,970 (+)NCBI
mRatBN7.2334,199,105 - 34,360,770 (+)NCBI
RefSeq Acc Id: XM_039105390   ⟹   XP_038961318
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,608,340 - 54,769,970 (+)NCBI
mRatBN7.2334,199,103 - 34,360,770 (+)NCBI
RefSeq Acc Id: XM_063284108   ⟹   XP_063140178
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,608,340 - 54,769,970 (+)NCBI
RefSeq Acc Id: XM_063284109   ⟹   XP_063140179
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,609,071 - 54,769,970 (+)NCBI
RefSeq Acc Id: XM_063284110   ⟹   XP_063140180
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8354,609,019 - 54,769,970 (+)NCBI
Ensembl Acc Id: ENSRNOP00000063299   ⟸   ENSRNOT00000065989
RefSeq Acc Id: XP_038961310   ⟸   XM_039105382
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961318   ⟸   XM_039105390
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961312   ⟸   XM_039105384
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038961315   ⟸   XM_039105387
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: NP_001382686   ⟸   NM_001395757
- Peptide Label: precursor
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140178   ⟸   XM_063284108
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140180   ⟸   XM_063284110
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063140179   ⟸   XM_063284109
- Peptide Label: isoform X1
- UniProtKB: A6JEZ8 (UniProtKB/TrEMBL),   D3ZUF1 (UniProtKB/TrEMBL)

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZUF1-F1-model_v2 AlphaFold D3ZUF1 1-205 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13692070
Promoter ID:EPDNEW_R2595
Type:single initiation site
Name:Lypd6b_1
Description:LY6/PLAUR domain containing 6B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0335,271,834 - 35,271,894EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562767 AgrOrtholog
BioCyc Gene G2FUF-49758 BioCyc
Ensembl Genes ENSRNOG00000004614 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000065989 ENTREZGENE
  ENSRNOT00000065989.4 UniProtKB/TrEMBL
Gene3D-CATH 2.10.60.10 UniProtKB/TrEMBL
InterPro LYPD6-like UniProtKB/TrEMBL
  Snake_toxin-like_sf UniProtKB/TrEMBL
NCBI Gene 362133 ENTREZGENE
PANTHER LY6/PLAUR DOMAIN-CONTAINING PROTEIN 6B UniProtKB/TrEMBL
  PTHR31171 UniProtKB/TrEMBL
Pfam UPAR_LY6_2 UniProtKB/TrEMBL
PhenoGen Lypd6b PhenoGen
RatGTEx ENSRNOG00000004614 RatGTEx
Superfamily-SCOP SSF57302 UniProtKB/TrEMBL
UniProt A6JEZ8 ENTREZGENE, UniProtKB/TrEMBL
  D3ZUF1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2022-09-15 Lypd6b  Ly6/Plaur domain containing 6B  Lypd6b  LY6/PLAUR domain containing 6B  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-09-09 Lypd6b  LY6/PLAUR domain containing 6B  RGD1562767  similar to RIKEN cDNA 2310010M24   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562767  similar to RIKEN cDNA 2310010M24   RGD1562767_predicted  similar to RIKEN cDNA 2310010M24 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562767_predicted  similar to RIKEN cDNA 2310010M24 (predicted)  LOC362133  similar to RIKEN cDNA 2310010M24  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC362133  similar to RIKEN cDNA 2310010M24      Symbol and Name status set to provisional 70820 PROVISIONAL