Tmem229b (transmembrane protein 229B) - Rat Genome Database

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Pathways
Gene: Tmem229b (transmembrane protein 229B) Rattus norvegicus
Analyze
Symbol: Tmem229b
Name: transmembrane protein 229B
RGD ID: 1562622
Description: Predicted to act upstream of or within macrophage activation and response to bacterium. Predicted to be located in membrane. Orthologous to human TMEM229B (transmembrane protein 229B); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acetamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC503035; RGD1562622; similar to RIKEN cDNA 6330442E10 gene
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86103,509,457 - 103,552,600 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6103,508,342 - 103,552,647 (-)EnsemblGRCr8
mRatBN7.2697,771,645 - 97,819,582 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl697,775,332 - 97,819,489 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx698,206,125 - 98,248,759 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0698,505,284 - 98,547,916 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0697,892,028 - 97,934,831 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06102,152,146 - 102,196,372 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6102,152,147 - 102,196,138 (-)Ensemblrn6Rnor6.0
Rnor_5.06111,524,857 - 111,565,742 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46101,599,755 - 101,644,033 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera696,164,472 - 96,206,185 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
membrane  (IEA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:23012479  


Genomics

Comparative Map Data
Tmem229b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86103,509,457 - 103,552,600 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl6103,508,342 - 103,552,647 (-)EnsemblGRCr8
mRatBN7.2697,771,645 - 97,819,582 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl697,775,332 - 97,819,489 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx698,206,125 - 98,248,759 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0698,505,284 - 98,547,916 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0697,892,028 - 97,934,831 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.06102,152,146 - 102,196,372 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl6102,152,147 - 102,196,138 (-)Ensemblrn6Rnor6.0
Rnor_5.06111,524,857 - 111,565,742 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.46101,599,755 - 101,644,033 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera696,164,472 - 96,206,185 (-)NCBICelera
Cytogenetic Map6q24NCBI
TMEM229B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh381467,470,269 - 67,533,850 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl1467,447,084 - 67,533,878 (-)Ensemblhg38GRCh38
GRCh371467,936,986 - 68,000,567 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 361467,006,736 - 67,051,774 (-)NCBIBuild 36Build 36hg18NCBI36
Celera1447,996,017 - 48,041,084 (-)NCBICelera
Cytogenetic Map14q24.1NCBI
HuRef1448,106,827 - 48,151,820 (-)NCBIHuRef
CHM1_11467,875,633 - 67,920,666 (-)NCBICHM1_1
T2T-CHM13v2.01461,677,388 - 61,740,966 (-)NCBIT2T-CHM13v2.0
Tmem229b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391279,008,569 - 79,054,333 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1279,008,569 - 79,054,401 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381278,961,795 - 79,007,559 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1278,961,795 - 79,007,627 (-)Ensemblmm10GRCm38
MGSCv371280,062,782 - 80,108,264 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361279,880,640 - 79,926,117 (-)NCBIMGSCv36mm8
Celera1280,425,864 - 80,471,792 (-)NCBICelera
Cytogenetic Map12C3NCBI
cM Map1235.51NCBI
Tmem229b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554662,715,192 - 2,733,431 (+)Ensembl
ChiLan1.0NW_0049554662,672,966 - 2,733,431 (+)NCBIChiLan1.0ChiLan1.0
TMEM229B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21568,578,506 - 68,623,852 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan11467,795,018 - 67,840,364 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v01448,048,101 - 48,093,447 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.11466,926,265 - 66,971,686 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl1466,929,386 - 66,929,889 (-)EnsemblpanPan2panpan1.1
TMEM229B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1841,452,231 - 41,490,059 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl841,452,371 - 41,452,877 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha841,142,066 - 41,183,131 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0841,677,735 - 41,718,597 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl841,680,912 - 41,681,418 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1841,296,549 - 41,337,396 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0841,373,262 - 41,411,066 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0841,729,359 - 41,770,462 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Tmem229b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440864063,291,260 - 63,333,085 (+)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_00493649510,861,586 - 10,873,876 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_00493649510,858,641 - 10,900,379 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
TMEM229B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1791,181,474 - 91,190,162 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2797,491,470 - 97,533,307 (-)NCBISscrofa10.2Sscrofa10.2susScr3
TMEM229B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12444,719,179 - 44,764,187 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2444,719,837 - 44,720,337 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605332,949,806 - 32,994,166 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Tmem229b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473433,483,425 - 33,527,899 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473433,483,415 - 33,527,899 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Tmem229b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1793,075,216 - 93,124,024 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Tmem229b
220 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:438
Count of miRNA genes:229
Interacting mature miRNAs:301
Transcripts:ENSRNOT00000014132
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2313399Anxrr28Anxiety related response QTL 28aggression-related behavior trait (VT:0015014)tameness/aggressiveness composite score (CMO:0002136)6101593607138161926Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
12801471Schws9Schwannoma susceptibility QTL 9nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6101593607146593607Rat

Markers in Region
D6Uwm1  
Rat AssemblyChrPosition (strand)SourceJBrowse
GRCr86103,546,658 - 103,546,770 (+)Marker Load Pipeline
mRatBN7.2697,813,642 - 97,813,752 (+)MAPPERmRatBN7.2
mRatBN7.21131,344,107 - 131,345,109 (+)MAPPERmRatBN7.2
Rnor_6.06102,190,589 - 102,190,700NCBIRnor6.0
Rnor_6.01139,111,650 - 139,112,651NCBIRnor6.0
Rnor_5.06111,560,193 - 111,560,304UniSTSRnor5.0
Rnor_5.01140,091,741 - 140,092,742UniSTSRnor5.0
RGSC_v3.41133,136,243 - 133,137,244UniSTSRGSC3.4
RGSC_v3.46101,638,484 - 101,638,595UniSTSRGSC3.4
Celera696,200,636 - 96,200,747UniSTS
Celera1123,427,990 - 123,428,991UniSTS
RGSC_v3.16101,641,939 - 101,642,051RGD
Cytogenetic Map6q24UniSTS
RH141503  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2697,776,592 - 97,776,773 (+)MAPPERmRatBN7.2
Rnor_6.06102,152,306 - 102,152,486NCBIRnor6.0
Rnor_5.06111,525,017 - 111,525,197UniSTSRnor5.0
RGSC_v3.46101,599,914 - 101,600,094UniSTSRGSC3.4
Celera696,164,631 - 96,164,811UniSTS
RH 3.4 Map6690.49UniSTS
Cytogenetic Map6q24UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 165 91 90 59 92 59 6 356 192 11 144 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001109359 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434333 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434334 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434336 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434337 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434338 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  NM_001434339 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008764845 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594315 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594316 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594317 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594318 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594319 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594320 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594321 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594322 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594323 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594324 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017594325 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112767 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039112770 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262348 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262350 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262351 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063262352 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide CH473947 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211952 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ225876 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ227867 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000006 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000014132   ⟹   ENSRNOP00000014132
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6103,509,111 - 103,552,296 (-)Ensembl
mRatBN7.2 Ensembl697,776,206 - 97,819,489 (-)Ensembl
Rnor_6.0 Ensembl6102,152,147 - 102,196,138 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000096653   ⟹   ENSRNOP00000076560
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6103,509,175 - 103,552,550 (-)Ensembl
mRatBN7.2 Ensembl697,776,206 - 97,819,278 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000098038   ⟹   ENSRNOP00000086127
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6103,509,220 - 103,551,955 (-)Ensembl
mRatBN7.2 Ensembl697,776,846 - 97,786,346 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000119192   ⟹   ENSRNOP00000097942
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6103,508,356 - 103,552,647 (-)Ensembl
mRatBN7.2 Ensembl697,775,332 - 97,792,552 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000121453   ⟹   ENSRNOP00000104454
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6103,508,648 - 103,552,647 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000130390   ⟹   ENSRNOP00000112675
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6103,511,267 - 103,552,390 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000137203   ⟹   ENSRNOP00000100204
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6103,509,220 - 103,547,625 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000147886   ⟹   ENSRNOP00000110994
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6103,508,342 - 103,516,458 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000148907   ⟹   ENSRNOP00000108867
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6103,508,350 - 103,538,503 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000150319   ⟹   ENSRNOP00000102485
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl6103,508,342 - 103,538,503 (-)Ensembl
RefSeq Acc Id: NM_001109359   ⟹   NP_001102829
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,509,458 - 103,552,208 (-)NCBI
mRatBN7.2697,776,434 - 97,819,190 (-)NCBI
Rnor_6.06102,152,147 - 102,196,138 (-)NCBI
Rnor_5.06111,524,857 - 111,565,742 (-)NCBI
RGSC_v3.46101,599,755 - 101,644,033 (-)RGD
Celera696,164,472 - 96,206,185 (-)RGD
Sequence:
RefSeq Acc Id: XM_017594313   ⟹   XP_017449802
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,509,457 - 103,552,097 (-)NCBI
mRatBN7.2697,776,433 - 97,819,070 (-)NCBI
Rnor_6.06102,152,146 - 102,196,220 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594315   ⟹   XP_017449804
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,509,457 - 103,529,906 (-)NCBI
mRatBN7.2697,776,433 - 97,792,942 (-)NCBI
Rnor_6.06102,152,146 - 102,168,577 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594316   ⟹   XP_017449805
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,509,457 - 103,552,600 (-)NCBI
mRatBN7.2697,776,433 - 97,819,582 (-)NCBI
Rnor_6.06102,152,146 - 102,196,372 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594319   ⟹   XP_017449808
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,509,457 - 103,552,184 (-)NCBI
mRatBN7.2697,776,433 - 97,819,161 (-)NCBI
Rnor_6.06102,152,146 - 102,196,220 (-)NCBI
Sequence:
RefSeq Acc Id: XM_017594325   ⟹   XP_017449814
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,509,457 - 103,552,286 (-)NCBI
mRatBN7.2697,776,433 - 97,819,269 (-)NCBI
Rnor_6.06102,152,146 - 102,196,220 (-)NCBI
Sequence:
RefSeq Acc Id: XM_039112767   ⟹   XP_038968695
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,509,457 - 103,529,906 (-)NCBI
mRatBN7.2697,776,433 - 97,792,942 (-)NCBI
RefSeq Acc Id: XM_039112770   ⟹   XP_038968698
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,509,457 - 103,513,549 (-)NCBI
mRatBN7.2697,776,433 - 97,786,214 (-)NCBI
RefSeq Acc Id: XM_063262348   ⟹   XP_063118418
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,509,457 - 103,529,907 (-)NCBI
RefSeq Acc Id: XM_063262349   ⟹   XP_063118419
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,509,457 - 103,533,774 (-)NCBI
RefSeq Acc Id: XM_063262350   ⟹   XP_063118420
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,509,457 - 103,529,912 (-)NCBI
RefSeq Acc Id: XM_063262351   ⟹   XP_063118421
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,509,457 - 103,529,912 (-)NCBI
RefSeq Acc Id: XM_063262352   ⟹   XP_063118422
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86103,509,457 - 103,552,076 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001102829 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421262 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421263 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421265 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421266 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421267 (Get FASTA)   NCBI Sequence Viewer  
  NP_001421268 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449802 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449804 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449805 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449808 (Get FASTA)   NCBI Sequence Viewer  
  XP_017449814 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968695 (Get FASTA)   NCBI Sequence Viewer  
  XP_038968698 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118418 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118419 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118420 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118421 (Get FASTA)   NCBI Sequence Viewer  
  XP_063118422 (Get FASTA)   NCBI Sequence Viewer  
GenBank Protein EDM03712 (Get FASTA)   NCBI Sequence Viewer  
  EDM03713 (Get FASTA)   NCBI Sequence Viewer  
  EDM03714 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000014132
  ENSRNOP00000014132.2
  ENSRNOP00000076560.1
  ENSRNOP00000086127
  ENSRNOP00000086127.1
  ENSRNOP00000097942
  ENSRNOP00000097942.1
  ENSRNOP00000100204
  ENSRNOP00000100204.1
  ENSRNOP00000102485
  ENSRNOP00000102485.1
  ENSRNOP00000104454.1
  ENSRNOP00000108867.1
  ENSRNOP00000110994
  ENSRNOP00000110994.1
  ENSRNOP00000112675.1
RefSeq Acc Id: NP_001102829   ⟸   NM_001109359
- Sequence:
RefSeq Acc Id: XP_017449805   ⟸   XM_017594316
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449808   ⟸   XM_017594319
- Peptide Label: isoform X1
- UniProtKB: D4ACC3 (UniProtKB/TrEMBL),   A6HCF8 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017449814   ⟸   XM_017594325
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449802   ⟸   XM_017594313
- Peptide Label: isoform X1
- Sequence:
RefSeq Acc Id: XP_017449804   ⟸   XM_017594315
- Peptide Label: isoform X1
- Sequence:
Ensembl Acc Id: ENSRNOP00000014132   ⟸   ENSRNOT00000014132
RefSeq Acc Id: XP_038968695   ⟸   XM_039112767
- Peptide Label: isoform X1
- UniProtKB: D4ACC3 (UniProtKB/TrEMBL),   A6HCF8 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038968698   ⟸   XM_039112770
- Peptide Label: isoform X1
- UniProtKB: D4ACC3 (UniProtKB/TrEMBL),   A6HCF8 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000097942   ⟸   ENSRNOT00000119192
Ensembl Acc Id: ENSRNOP00000076560   ⟸   ENSRNOT00000096653
Ensembl Acc Id: ENSRNOP00000086127   ⟸   ENSRNOT00000098038
RefSeq Acc Id: XP_063118422   ⟸   XM_063262352
- Peptide Label: isoform X1
- UniProtKB: A6HCF8 (UniProtKB/TrEMBL),   D4ACC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118419   ⟸   XM_063262349
- Peptide Label: isoform X1
- UniProtKB: A6HCF8 (UniProtKB/TrEMBL),   D4ACC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118421   ⟸   XM_063262351
- Peptide Label: isoform X1
- UniProtKB: A6HCF8 (UniProtKB/TrEMBL),   D4ACC3 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063118420   ⟸   XM_063262350
- Peptide Label: isoform X1
RefSeq Acc Id: XP_063118418   ⟸   XM_063262348
- Peptide Label: isoform X1
Ensembl Acc Id: ENSRNOP00000104454   ⟸   ENSRNOT00000121453
Ensembl Acc Id: ENSRNOP00000110994   ⟸   ENSRNOT00000147886
Ensembl Acc Id: ENSRNOP00000112675   ⟸   ENSRNOT00000130390
Ensembl Acc Id: ENSRNOP00000108867   ⟸   ENSRNOT00000148907
Ensembl Acc Id: ENSRNOP00000100204   ⟸   ENSRNOT00000137203
Ensembl Acc Id: ENSRNOP00000102485   ⟸   ENSRNOT00000150319

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D4ACC3-F1-model_v2 AlphaFold D4ACC3 1-167 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562622 AgrOrtholog
BioCyc Gene G2FUF-36981 BioCyc
Ensembl Genes ENSRNOG00000010646 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000014132 ENTREZGENE
  ENSRNOT00000014132.6 UniProtKB/TrEMBL
  ENSRNOT00000096653.2 UniProtKB/TrEMBL
  ENSRNOT00000098038 ENTREZGENE
  ENSRNOT00000098038.2 UniProtKB/TrEMBL
  ENSRNOT00000119192 ENTREZGENE
  ENSRNOT00000119192.2 UniProtKB/TrEMBL
  ENSRNOT00000121453.1 UniProtKB/TrEMBL
  ENSRNOT00000130390.1 UniProtKB/TrEMBL
  ENSRNOT00000137203 ENTREZGENE
  ENSRNOT00000137203.1 UniProtKB/TrEMBL
  ENSRNOT00000147886 ENTREZGENE
  ENSRNOT00000147886.1 UniProtKB/TrEMBL
  ENSRNOT00000148907.1 UniProtKB/TrEMBL
  ENSRNOT00000150319 ENTREZGENE
  ENSRNOT00000150319.1 UniProtKB/TrEMBL
InterPro DUF1113 UniProtKB/TrEMBL
KEGG Report rno:503035 UniProtKB/TrEMBL
NCBI Gene 503035 ENTREZGENE
PANTHER TRANSMEMBRANE PROTEIN 229 FAMILY MEMBER UniProtKB/TrEMBL
  TRANSMEMBRANE PROTEIN 229B UniProtKB/TrEMBL
Pfam DUF1113 UniProtKB/TrEMBL
PhenoGen Tmem229b PhenoGen
RatGTEx ENSRNOG00000010646 RatGTEx
UniProt A0ABK0M5H7_RAT UniProtKB/TrEMBL
  A6HCF8 ENTREZGENE, UniProtKB/TrEMBL
  D4ACC3 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-02-12 Tmem229b  transmembrane protein 229B  RGD1562622  similar to RIKEN cDNA 6330442E10 gene   Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562622  similar to RIKEN cDNA 6330442E10 gene   RGD1562622_predicted  similar to RIKEN cDNA 6330442E10 gene (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562622_predicted  similar to RIKEN cDNA 6330442E10 gene (predicted)  LOC503035  similar to RIKEN cDNA 6330442E10 gene  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC503035  similar to RIKEN cDNA 6330442E10 gene      Symbol and Name status set to provisional 70820 PROVISIONAL