Rab7b (Rab7b, member RAS oncogene family)

Gene: Rab7b (Rab7b, member RAS oncogene family) Rattus norvegicus

Analyze

Symbol:

Rab7b

Name:

Rab7b, member RAS oncogene family

RGD ID:

1562617

Description:

Predicted to enable GTP binding activity and GTPase activity. Predicted to be involved in several processes, including late endosome to Golgi transport; positive regulation of interleukin-6 production; and regulation of pattern recognition receptor signaling pathway. Predicted to act upstream of or within cellular response to type II interferon. Predicted to be located in trans-Golgi network. Predicted to be active in late endosome; lysosome; and phagocytic vesicle. Orthologous to human RAB7B (RAB7B, member RAS oncogene family); PARTICIPATES IN Entamoebiasis pathway; phagocytosis pathway; INTERACTS WITH 1-naphthyl isothiocyanate; 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC501854; ras-related protein Rab-7b; RGD1562617; similar to RAB7-like protein

RGD Orthologs

Alliance Genes

More Info

more info ...

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	45,673,396 - 45,699,798 (+)	NCBI		GRCr8
mRatBN7.2	13	43,121,168 - 43,147,581 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	43,121,226 - 43,147,581 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	45,724,566 - 45,751,219 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	47,012,704 - 47,039,362 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	44,277,285 - 44,303,944 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	48,456,143 - 48,483,714 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	48,455,923 - 48,482,138 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	53,528,328 - 53,554,460 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	44,620,063 - 44,636,864 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	43,459,652 - 43,485,905 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

Acute Coronary Syndrome (ISO)

autistic disorder (ISO)

osteoporosis (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

(1->4)-beta-D-glucan (ISO)

1-naphthyl isothiocyanate (EXP)

17beta-estradiol (ISO)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

3-isobutyl-1-methyl-7H-xanthine (ISO)

4,4'-sulfonyldiphenol (ISO)

4-hydroxyphenyl retinamide (ISO)

6-propyl-2-thiouracil (EXP)

acetamide (EXP)

aflatoxin B1 (EXP,ISO)

atrazine (EXP)

bisphenol A (EXP,ISO)

butanal (ISO)

cadmium atom (ISO)

cadmium dichloride (ISO)

cannabidiol (ISO)

cobalt dichloride (EXP,ISO)

copper atom (EXP)

copper(0) (EXP)

dexamethasone (ISO)

dorsomorphin (ISO)

endosulfan (EXP)

fenvalerate (EXP)

FR900359 (ISO)

fumonisin B1 (ISO)

genistein (ISO)

gentamycin (EXP)

hydroquinone (ISO)

indometacin (ISO)

lead diacetate (EXP)

lidocaine (EXP)

lipopolysaccharide (ISO)

MeIQx (ISO)

niclosamide (ISO)

panobinostat (ISO)

paracetamol (EXP)

paraquat (EXP)

pentanal (ISO)

perfluorooctane-1-sulfonic acid (ISO)

propanal (ISO)

SB 431542 (ISO)

silicon dioxide (EXP,ISO)

sodium arsenite (ISO)

sodium dodecyl sulfate (ISO)

Soman (EXP)

sotorasib (ISO)

temozolomide (ISO)

thioacetamide (EXP)

titanium dioxide (EXP)

trametinib (ISO)

trichostatin A (ISO)

triptonide (ISO)

trovafloxacin (ISO)

valproic acid (ISO)

vinclozolin (EXP)

vorinostat (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

cellular response to type II interferon (ISO)

endosome to lysosome transport (IBA)

late endosome to Golgi transport (ISO)

negative regulation of toll-like receptor 4 signaling pathway (ISO)

negative regulation of toll-like receptor 9 signaling pathway (ISO)

phagosome-lysosome fusion (IBA)

positive regulation of interleukin-6 production (ISO)

positive regulation of megakaryocyte differentiation (ISO)

Cellular Component

Golgi apparatus (ISO)

late endosome (IBA,ISO)

lysosome (IBA,ISO)

phagocytic vesicle (IBA,ISO)

trans-Golgi network (ISO)

Molecular Function

GTP binding (IEA)

GTPase activity (IEA)

protein binding (ISO)

Molecular Pathway Annotations Click to see Annotation Detail View

Entamoebiasis pathway (IEA)

phagocytosis pathway (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium.	Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2.	KEGG Annotation Import Pipeline	Pipeline to import KEGG annotations from KEGG into RGD
3.	GOA pipeline	RGD automated data pipeline
4.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:17395780	PMID:19144319	PMID:19587007	PMID:20375062	PMID:20953574	PMID:21255211	PMID:30911939

Genomics

Comparative Map Data

Rab7b
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	13	45,673,396 - 45,699,798 (+)	NCBI		GRCr8
mRatBN7.2	13	43,121,168 - 43,147,581 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	13	43,121,226 - 43,147,581 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	13	45,724,566 - 45,751,219 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	13	47,012,704 - 47,039,362 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	13	44,277,285 - 44,303,944 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	13	48,456,143 - 48,483,714 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	13	48,455,923 - 48,482,138 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	13	53,528,328 - 53,554,460 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	13	44,620,063 - 44,636,864 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	13	43,459,652 - 43,485,905 (+)	NCBI		Celera
Cytogenetic Map	13	q13	NCBI

RAB7B
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	205,976,740 - 206,003,395 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	205,976,740 - 206,003,461 (-)	Ensembl	GRCh38		hg38	GRCh38
Celera	1	179,083,656 - 179,111,173 (-)	NCBI		Celera
Cytogenetic Map	1	q32.1	NCBI
T2T-CHM13v2.0	1	205,240,788 - 205,267,388 (-)	NCBI		T2T-CHM13v2.0

Rab7b
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	1	131,616,412 - 131,646,288 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	1	131,616,433 - 131,643,177 (+)	Ensembl		GRCm39 Ensembl
GRCm38	1	131,688,681 - 131,715,443 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	1	131,688,695 - 131,715,439 (+)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	1	133,585,272 - 133,610,041 (+)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	1	133,516,271 - 133,540,610 (+)	NCBI		MGSCv36	mm8
Celera	1	134,288,561 - 134,315,745 (+)	NCBI		Celera
Cytogenetic Map	1	E4	NCBI
cM Map	1	57.18	NCBI

Rab7b
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955406	41,615,302 - 41,638,151 (-)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955406	41,615,302 - 41,638,157 (-)	NCBI	ChiLan1.0	ChiLan1.0

RAB7B
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	43,366,553 - 43,393,623 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	43,332,079 - 43,359,104 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	181,584,814 - 181,611,831 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	185,868,040 - 185,894,691 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	185,867,145 - 185,894,691 (-)	Ensembl	panpan1.1		panPan2

RAB7B
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	38	2,333,939 - 2,359,531 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	38	2,335,535 - 2,359,469 (-)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	38	2,426,274 - 2,452,097 (-)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	38	2,331,177 - 2,356,692 (-)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	38	2,331,172 - 2,356,652 (-)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	38	2,324,856 - 2,350,846 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	38	2,716,580 - 2,742,361 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	38	2,917,536 - 2,943,551 (-)	NCBI		UU_Cfam_GSD_1.0

Rab7b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024409344	69,264,259 - 69,283,993 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936557	6,504,509 - 6,519,219 (+)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936557	6,504,562 - 6,519,219 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

RAB7B
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	66,635,638 - 66,666,036 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	9	66,635,636 - 66,666,034 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	72,916,252 - 72,946,414 (+)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

RAB7B
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	25	23,341,090 - 23,367,414 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	25	23,341,490 - 23,367,398 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666055	24,038,503 - 24,064,596 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Rab7b
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624807	5,307,440 - 5,334,945 (+)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624807	5,307,361 - 5,334,578 (+)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Rab7b
174 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	49
Count of miRNA genes:	47
Interacting mature miRNAs:	48
Transcripts:	ENSRNOT00000009280
Prediction methods:	Miranda, Rnahybrid
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	1	101056920	Rat
1354666	Bp244	Blood pressure QTL 244	4.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	1	101056920	Rat
61339	Bp24	Blood pressure QTL 24		0.05	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	5994668	44807491	Rat
1581554	Pur11	Proteinuria QTL 11			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
1581573	Uae36	Urinary albumin excretion QTL 36			urine albumin amount (VT:0002871)	urine albumin excretion rate (CMO:0000757)	13	5994833	77046787	Rat
1581570	Eae17	Experimental allergic encephalomyelitis QTL 17	4.1		nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	8897350	101631289	Rat
7411662	Foco29	Food consumption QTL 29	20.8	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	13	9313465	54313465	Rat
9589141	Insul28	Insulin level QTL 28	10.82	0.001	blood insulin amount (VT:0001560)	plasma insulin level (CMO:0000342)	13	9313465	54313465	Rat
2317040	Aia21	Adjuvant induced arthritis QTL 21	2.75		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	9831541	54831541	Rat
2317046	Aia8	Adjuvant induced arthritis QTL 8	3.9700000286102295		joint integrity trait (VT:0010548)	left rear ankle joint diameter (CMO:0002149)	13	9831541	54831541	Rat
1300163	Cardf1	Cardiac cell morphology QTL 1	4.18		aorta morphology trait (VT:0000272)	artery lesion measurement (CMO:0000975)	13	11929449	45417941	Rat
2302275	Gluco37	Glucose level QTL 37	3.8		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	13	11929449	46193066	Rat
631645	Bp121	Blood pressure QTL 121	3.3		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	14915655	59915655	Rat
9589164	Gluco66	Glucose level QTL 66	6.67	0.001	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	13	15158722	60158722	Rat
1331784	Bp222	Blood pressure QTL 222	2.944		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	17694436	53050594	Rat
7207885	Glom27	Glomerulus QTL 27	3.9		kidney glomerulus integrity trait (VT:0010546)	kidney crescentic glomeruli count to kidney normal glomeruli count ratio (CMO:0002139)	13	20605871	101339738	Rat
61391	Bp5	Blood pressure QTL 5	5.6		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	22301875	67301875	Rat
70170	Eae14	Experimental allergic encephalomyelitis QTL 14		0.0024	nervous system integrity trait (VT:0010566)	experimental autoimmune encephalomyelitis incidence/prevalence measurement (CMO:0001046)	13	23203448	68203448	Rat
6893338	Cm76	Cardiac mass QTL 76	0	0.99	heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	13	23692969	68692969	Rat
1558644	Cm45	Cardiac mass QTL 45	3.6	0.002	heart mass (VT:0007028)	heart wet weight (CMO:0000069)	13	23692969	68692969	Rat
1354621	Rf47	Renal function QTL 47	3.7		kidney renin amount (VT:0010559)	kidney renin level (CMO:0002166)	13	30395351	101056920	Rat
2301962	Cm72	Cardiac mass QTL 72	4.12		heart left ventricle mass (VT:0007031)	heart left ventricle weight (CMO:0000776)	13	31241331	58363171	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	31241331	93395974	Rat
70181	BpQTLcluster11	Blood pressure QTL cluster 11	6.922		arterial blood pressure trait (VT:2000000)	absolute change in mean arterial blood pressure (CMO:0000533)	13	31241331	93395974	Rat
2303563	Bw89	Body weight QTL 89	6		body mass (VT:0001259)	body weight (CMO:0000012)	13	32284471	77284471	Rat
61340	Bp25	Blood pressure QTL 25	4.2	0.004	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	34535218	79535218	Rat
12879477	Bp401	Blood pressure QTL 401			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	37262092	82262092	Rat
61349	Bp31	Blood pressure QTL 31	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
70220	Bp55	Blood pressure QTL 55	5.75		arterial blood pressure trait (VT:2000000)	blood pressure measurement (CMO:0000003)	13	37374509	82374509	Rat
4889861	Pur29	Proteinuria QTL 29	13.8	0.005	urine total protein amount (VT:0000032)	urine total protein excretion rate (CMO:0000756)	13	37415584	80753406	Rat
1331750	Bp220	Blood pressure QTL 220	2.98		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	13	37415584	82415584	Rat
1549897	Stresp12	Stress response QTL 12	3.35		stress-related behavior trait (VT:0010451)	number of approaches toward negative stimulus before onset of defensive burying response (CMO:0001960)	13	38433408	83433408	Rat
619615	Bp80	Blood pressure QTL 80		0.0354	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	13	39754544	84754544	Rat
2303032	Bp328	Blood pressure QTL 328			arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	13	41184022	45417941	Rat

Markers in Region

BF390192

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	13	43,147,351 - 43,147,506 (+)	MAPPER	mRatBN7.2
Rnor_6.0	13	48,482,119 - 48,482,273	NCBI	Rnor6.0
Rnor_5.0	13	53,554,231 - 53,554,385	UniSTS	Rnor5.0
RGSC_v3.4	13	44,637,946 - 44,638,100	UniSTS	RGSC3.4
Celera	13	43,485,676 - 43,485,830	UniSTS
RH 3.4 Map	13	112.3	UniSTS
Cytogenetic Map	13	q13	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium			6		7				2		15	1
Low	3	43	41	31	12	31	8	11	64	29	25	10	8
Below cutoff			10	10		10			8	6	1

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001109328	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769490	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769491	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008769492	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017598905	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063272554	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	CH473958	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FM076322	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ234391	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000013	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000009280 ⟹ ENSRNOP00000009280

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	43,121,226 - 43,147,581 (+)	Ensembl
Rnor_6.0 Ensembl	13	48,455,923 - 48,482,138 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000103032 ⟹ ENSRNOP00000094821

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	43,121,226 - 43,144,754 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000109645 ⟹ ENSRNOP00000088975

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	43,121,226 - 43,147,580 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000113839 ⟹ ENSRNOP00000081874

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	13	43,121,226 - 43,145,787 (+)	Ensembl

RefSeq Acc Id:

NM_001109328 ⟹ NP_001102798

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,673,445 - 45,699,798 (+)	NCBI
mRatBN7.2	13	43,121,226 - 43,147,581 (+)	NCBI
Rnor_6.0	13	48,456,216 - 48,482,348 (+)	NCBI
Rnor_5.0	13	53,528,328 - 53,554,460 (+)	NCBI
RGSC_v3.4	13	44,620,063 - 44,636,864 (+)	RGD
Celera	13	43,459,652 - 43,485,905 (+)	NCBI

Sequence:

show sequence

GTGGCCTCTCACCAAAACCGTTTACGTTCTCAATACTGGCCAGATTGAAACTGCCACTCAGGGA
AGAGAGGCCCAGACCCAGAACTCCCACCTGTGTGAGGCCCTCATGAATCCCCGAAAGAAAGTGG
ACTTGAAACTTATCATTGTTGGTGCACTTGGTGTGGGAAAGACCTCTCTCCTTCATCAATATGT
ACACAAGACATTTTTTGAGGAATACCAGACCACACTGGGGGCCAGCATCCTCTCCAAAATTATC
ATACTGGATGACACAACTTTGAAGCTGCAGATCTGGGACACAGGTGGTCAAGAGCGGTTCCGCT
CAATGGTATCAACATTCTACAAAGGTTCCGATGGCTGTATCCTGGCATTTGATGTTACTGATCC
AGAGTCCTTTGAAGCCCTGGATATCTGGAGGGATGATGTCCTGGCAAAGATCGTCCCTATGGAG
CAGTCATATCCCATGGTGGTGCTGGGCAACAAAATCGATCTGGAAGATAGGAAGGTGCCCCAGG
AGGTGGCCCATGAATGGTGTAAAGAGAAGGACATGCCATACTTTGAAGTTAGTGCGAAGAATGA
CATCAATGTGGTGCAGGCCTTTGAGGTTCTGGCCAGCCGGGCTCTGTTGAGGTACCAAGGCATT
GCCGAGAATCACCTTGCAGACTCCATCAAGCTCTCTCCGGGCCAACCAAGGAGCAAATGCTGCT
GATCCTGGACCCCCTCCTTCCAGACTCCTGATGCTCAATCCCTCAAGCCCGTAGTCAGCGAGGA
GACTGAGCCACTGCAGCAGGAGAGACTGTCACAAGGCAAACCCTGGCTCCAGAGAAATCATGGG
AGTCTTGATGACTCAAGCTTTTCTTTCTCCTCTCCTCCAACACAATCCTGCGAGTCTCTGGAGA
CAAGCCTCTCCCTTGAGCACTGAGGAGCTTTGGATGGAAATGCACCTCTGACTCCCTCAGCAGC
CAGGACACGGACCGCTCCTGACAGGCAGAAGCCTACAGGCCTGAGACTTCCCACGGCTTCTTCC
AAAGAGAGCTGAGGGAGCAAGATAAAACCAGTTGTTCCTGCTTCCTGGGTGTTCAAACGGCTTC
CATAACTGACCAGGCCTCAGTGTGCCCTCTGCCAAATGAGAGCTCCCCAGGTTCCCCATATCCC
AATGTGAGTTGAGGACCATAAACTCCATTTAAATCTCACTCACTGGTGTGGCCACACACGTTTA
CTCCTTCGGCAAGCATTTTGTTGCCTTCTACGTATGGTGCGTTGATGTCTGGAAACACACAAAA
CAGGCAGGAGTCCTGGCCTCCCAGAGGCACACCTGGAGACAGAGGGACAGACAGCAGGCCACCA
GCAGGACAGAGGACAGCAATGAGGTGCTATTTTAAACAAAGGGGCCAAGCAGGCTTCCCTGTGA
TGTGACAGTTGGGCTGACAGTTACAGTGCAAGCTACAGGAGTCAGGAGAGGGAGCAGCAAGGCC
AAGGCCCTGAGGCATTAGACAGCTACTTTCCATGTGAAAGCTCTTTCCCTGAGGACTCAAAGCT
GCTGCCAGTGATATCCTGTTCCCAGAAGGTGCCTTGAGCATTTGATGACTGGCCACTAGGGGGC
AGAAGTGTCCTCTACTTCCAGGCCAGGGAGTTCTGGGGATACTTGAAAAGCTGGTGTTTCTGTC
AAGAAAATGGCTGAAACATGTCCCCAGGCTGTAGGAATGTCAGACCTGGGCTAGTTGGGTAAAA
AAAACAAACAAACAAAAAAACAAAACAAAACAAAAAACCTTCAGGATACTTGATTCAGGGAACA
AATCAAAATCAGTAACAGATCCCAGAGCAAGCTACGTAGAGAGATATGGATTCTGTGTCCTGTA
CATTTCAAAGCTAGAACCTGGTTTTTTTTTTTCTTCTGGCTTCACACAGCACAGATAGGTTGGC
CCATTCTAAAAATGGTAGACGGGATGAACTCTCAAGATCTACAATGGTCAGGTTCATACCTCAT
GCCTACCAGACATTCCTGTCTCCACAGAAGTCTTCTTTTCTGAGTTCCGAGCAGATCAGAGGTA
TTCATCTCTAGGAAGCAACTGACCCCAAAGATTTCACTGAGAGGCAGGTAGTCAGGGGGCACCA
AGCGGAGGTCCTGGGGTCCCTGTCTGTCCCCACCTAGCTCTGAAGGATAAAGCAACTCCCCATG
GGCAGTGGTCACAGGAACAGTGAGCCCTGTGTCCCTCAGAGATGAATGATTTGTCCCTGTCATA
CACAGGTGTGGCTCTCCTGGAAGTCAGACGGTGGAGGGATGTGTGGTATGGGGAAGGGGGGAGG
GGGGAGAGTTCAGCACCACAATGAACACAAGAACCATATTTAAAGTTACACAACAAATAGTGTT
TCCTGTTTTTAATCCTTTGTGGGACAATAGTCCCCCTTGGTCTGTGATGCCAGTCTCAGTTACC
CGTGGGTCAACTGTGGACCAAAAATATTAAGTAGCAAATCCCAGAAATAAATAACTTATAACTT
TCAA

hide sequence

RefSeq Acc Id:

XM_008769491 ⟹ XP_008767713

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,675,070 - 45,699,798 (+)	NCBI
mRatBN7.2	13	43,122,867 - 43,146,844 (+)	NCBI
Rnor_6.0	13	48,457,132 - 48,477,912 (+)	NCBI

Sequence:

show sequence

GTGTGTATGTGTGTGTGTTGTGTTATGTTTTCTGTGAATGAAAGGCATGCATACTTACCACGGC
ATATTTGTGGAGATCGGAGGATAGCTCCGTTGAGTTGATTTTCTCCTTCTACCCTTACATGGGT
TCTGGCAAGTACCTTTCCTTGCTGAGCCATCTCGCTGGCCTACCAAGTAGTTTCGACTGCAGAA
TCTCTGGACTTATAATGGCATTTTATAAAATGCAAGCATTCTATAATTGGTAGGCATTGCTTAT
TGATAAAAAGAATTGTTCTGGGCTTATCGATCAGTCCCCCACTACAAAGATCTTATGCAGATAG
TAGTTTGTGAGTATCCTTAGACATACTGTGCTTCTGCATAGCAGGTGTGCACTACATGGGTGTC
TAGATACCTGGATGGGCGAATGAATATCCATTCATACATGCATAGAGAGGACACATGGATGGAT
ATGTCACTCTTCAGAAAAGCTTCTGTATCTGCAGCATCAGTCACCATGCTTTGGGGACAGGTGT
ACAGAGAGATAAGAGGTGCTGTCTAGGGTACGGGTAGTCTACTTGGGGAAGCAGGAAAAACATC
TCCCCAAAGAGCTTAAAGAATGAGAACCGGGAGCTCTGAGAGCAGCGTTGTGGGTGTGCTTTGT
GGAGGAAGCAGGTTTAGACCTGCAAGGATGGCTGGGTGATGCAGACTGTCACGTGACAACTGGC
AGGCAACAAAGCCTCCTGTGCCCCGAGAACACATCAAACAGAAAGCCTTATGCTCAGCCTGTGA
GTTCACTGTTAGAATGAATAAAGTTCGGGGTGCAAAGGGGAGACGAGAAACCGTGGAGCAAGAC
TAGAAGCAGAGGAAAGACCGGACAGAGAAACTGGGACTGCTGCAAAACTCTCAGCTGCCCCTGT
TCACTGGTCTCCCTGGCAACTTGCGTAGGACCTCATCCAGGACAAGCCCTCATGAATCCCCGAA
AGAAAGTGGACTTGAAACTTATCATTGTTGGTGCACTTGGTGTGGGAAAGACCTCTCTCCTTCA
TCAATATGTACACAAGACATTTTTTGAGGAATACCAGACCACACTGGGGGCCAGCATCCTCTCC
AAAATTATCATACTGGATGACACAACTTTGAAGCTGCAGATCTGGGACACAGGTGGTCAAGAGC
GGTTCCGCTCAATGGTATCAACATTCTACAAAGGTTCCGATGGCTGTATCCTGGCATTTGATGT
TACTGATCCAGAGTCCTTTGAAGCCCTGGATATCTGGAGGGATGATGTCCTGGCAAAGATCGTC
CCTATGGAGCAGTCATATCCCATGGTGGTGCTGGGCAACAAAATCGATCTGGAAGATAGGAAGG
TGCCCCAGGAGGTGGCCCATGAATGGTGTAAAGAGAAGGACATGCCATACTTTGAAGTTAGTGC
GAAGAATGACATCAATGTGGTGCAGGCCTTTGAGGTTCTGGCCAGCCGGGCTCTGTTGAGGGTG
AGTGATGCAGTAGTGGAACCAGTCAGAACTGCCCTAGGCGGGATCCTCAGGATCTTCCAAAGGA
GAAAATGCGGGCGTAGATAAGGGCATGGAGAGGATAGGAGTTCTCATTGTCTTCATTATTCGGT
AGTTGAATGGGCTTAGCAATTCTGGTGCCACAGAAGCCAGAGGTGTAAGTACCTGGGAGTAAGC
GCTTAGTTGGTTTTGCAGTCTGGCCAGCTACCACAGTCCCTTGTTACTGATTGATGCTGGTCGT
AGGTGCTGCAGTAGAGAGAGGCGCTCACCAAGATGCTAAGCCTTCATTTTTCTGAAGGAGCAGA
AGGGTACAGCCTCTTGAAGAAGGCTGTCACCCAGCCAGCTCACTCCAGTTACTTTATTCAAATA
TTATACAAGGTTAATTGGGGCTGGGAAAGGTTCCAACTATCAACGTTGCCTTGCCCTTGCTGCC
TGTGTGAGCAGACAACCCACATGGATCTCGGTCCCTTTTGACCATAGCTGGCCATAATCAAAAG
TAAGAACTCCAGGTTTGCCAGCAGTGTCTTAGGATCAAGATTAGTGCATCTGTAAGCACCAAGT
GCAGACCTTGTAGACAGAGAACATTTTTTCAAGGGTCAAATAGTCTCATAACAACTTCTCAGCC
TCTACTGATTGGCCCAAACATAGCAAAGGCTTGGCTGAAACATTTCACTCAAAGCCAGACACAA
ATGTCTTACTATACACATCACTCCATCTTCCCGCATTTTTTGTTTTAAGCAGATCTGCAAGGGA
TAACAATTATTGTTGGAGAATGATGGAGTTACACAGTAAACGTGGCCTTTGTCTATCTAGTTGT
CTATCATTCTATGCAAATAAATACACTTCAAAGCCAATAAAGTTGTCACCACAAAGAGAATTAT
AAAAATCACGAGAGCAAGAAACTTAGCAAAATGATTCATGGGATGAAATGAAGTTACACCATCC
ACAAGACATACTATGATGTTCGTCCCTGCTCTAGTAGGCAGCTTCTTTGAAAAATGCTTCTACG
GTTTCTTGCTGCAAATCCTAGATCATTTGAGAAGAATTAGGACGACCTAACAAATGCATTTTAA
CCTTCTCCCAGTCATACTTGCTGTCATTGACCCTTTCAATGTCACTTGATCCCTTAATAGTTCT
AATTGACCTCCAGTGAGTATTTCAGCTCGTCTCAATACTCCTCTGTCATCAACTGTTTCCCTGT
CTATCTTGTTATCGAGTCCAAAGTTCATAAGAATGCATACACCAGTCTTTAACAACTTCAGCAG
TTCGAACTGCTTTATGAGGGGAACTCTAGCTGTGACAGCTAATGCGACGATTCCTAGGACCTCG
GTGATTATCCTTCCACCATCCTCTGAGTCCTTAATATTCTTTCAGCAAGCTTCCACACGAGTGT
CACCACAGGTGAGTCTTGCCATGGTCTTGACGGTCTCACTGGCTTGCTGGTCTTGCTCTGAGAA
TATATTCACCTTCAAACGCAAAGACATACTAGCGTCGACACAGTTATGAAGGGTACAGCATGTG
CATGTGAGGCTATAATCATTAGGGTACTTTTATAATCATTAAGGTCTTTTCAGTAACACCTTGT
GGAGTGTCTAAGAGCTTCCGTCCTGTGCCTCACACTGGAGATTCTAATTCAGTGGAGATTTCAG
AAGTGATCTCTAGGCCAGTCCTCACGGCGGGATAGAAGTCTCTTGGGACCAAGCATTCATTTAG
TCGAGTGGAATCCACAGCCTATAGGAGTTGCTGACAGCCTCTCATCAGACAGATGAATAGATCC
AGGTGCTTCAATATGATGGCTTTAAAAGCTTGTGTAGAGCGCAGCATGTGTGCCCAACATTGTC
CAGGCAGCAAAGGTAACCACCGTCAGAGCAGTGATTTGAAATGGAGAAAACGAACAAGGGTGCT
TAAGAGACTAGAGGCATCCTGTAGGTGGAAATGGGTGCCCTCACCGTGGGTGACCTACTGACTT
GCATGACCCATGCTGTCCTGAAGAGAATGCCTCAAGACCCTGTCGGTAAAGACAGGCAGCCTTT
GCCTCCAGCAGCTGCACAGGGGATAAGTTAAGAGCTTTCTCAGTTCGCGTGGCCCAGCCTGGAC
CTCAGGTCAGCCTTCAGCCCTCACTGCTTCCTGTGAAGGAACAGCAGAGAGTAGCAAGGGCTGT
AAGCATGGCTTTGCCACACAGTCAGGAACGCTGGCTCCTAACATGCAGGTGAGCCTGCCTGTAC
CATTAGCCAAGACAGCTTATCACAACTTACCAGGATTGTGTGGTACAATTATGGCTAAACAGTC
GGTTGCATGGAATCTTCCACAGCCCACTGCCAGTGTGTATATGTGGTTATCATACGTCCCTCCC
AATTTGGGAGTTAAAGCACAACCTTCCTACTGTTACATTTTAATCACGTGAGGCCATTAGCAGG
TGGCAATTGTCTGCTTGTTCCTGTTAAAATCCTTTCTCTGCAAATAAAAGGAGCTTGGTGACCT
CATCACAGTTCCTGATCCTCGTACAGGAAACTGAACTGAGGTCCGGACGTCACAGGCACGGTGG
CTGCAGACAGATGGATCTCGATAAAGTCCTGTCCTGGTAGCTTCAGATGCATACCTGTCAAAAC
ATTCGACTGATCCGTGCCTCAGTTTCCCTACCTATAAAATGAAAACAATCCCATCCCATAAACA
CATCCTGAGCTGCCATGAGAGGGCTCATGATAGGGTCTCATTGCAGTCAGGCTCAGGGGTGTGG
AAGTCAAGCCTTAGCTCTTCCTCCCTGCCCCATGATCCCAAGAATAAGACTCAGACTCAAAATA
TATTTACAGATACCTTGGCCATACCGAGGCTCTTCTCTGACTAGATATAACTTAACGTTTCCGA
TTTATTCTAGCCTACATTCTGCCTCATGTGCTCAGGTTCCACCCGTCCATCTCTTCACATCTTC
CCAGCGAATCTTCCGCCTGGCTCTATCCCAGAATCCTTTTTGCTTCCCGGATTTCCCACCTCTA
TTTCCTGCTTAAGCCATAGGCCATCGGCTTTTTAATTGACAGGTGTTGCATCCACACAACACAC
AAGATATTCTCTCTCCACAGGAATGTGACACCTGAGGGCAACAGAGTGAAGCCGGAGACTGTAG
TGAAGGTGGGGTGACTCGGAGGCAGCTGGAGGCAAGGGGAACAAGGCGGCCATGTTTCAGAGGC
AGCGTGTTTAGAAAGTGTTTGCAGGTAGATTCGGCAGGTCTTTGGAGATGTGGGGAAGAAGGAA
AGAAGGGCAGAGATCCGTGGCCCGGGCTTCAATTCATTGGGGCTCGTGCAAGAAGTCAACTATG
AGTTTAGTTTACGAGAGAAGAAGATGCGGTGTTGAAGAGGATGAGGTCAGAGGACAATAGGGGT
GGTAAAGCCAGCAAGGCTTCTGAGGCTATGGCGGGTCACAGGAGGTGAGACTCAACACTGAAGA
GCCAGGGCTTCCAGCAGGTGGCGCTGGGGTGTCCATCGTGCTCAGGTGCCCAGGACACTGGTGC
CCAATAGGGCACATCTTTCAGCAGTGTATATGCACTTAGAATTAGAAATTTCCCACCAACATGT
TATAGGATGGAATGTAAAATCCACATGGATTTTAATAAACATCTTTACATGTTTGCAAACATAT
TTTGACATTCCCTCCAACGATCTGGCCCTTCTTTTTATTTCTTCTTCTTCTTCTTCTTC

hide sequence

RefSeq Acc Id:

XM_008769492 ⟹ XP_008767714

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,681,370 - 45,699,798 (+)	NCBI
mRatBN7.2	13	43,129,138 - 43,146,844 (+)	NCBI
Rnor_6.0	13	48,461,549 - 48,477,912 (+)	NCBI

Sequence:

show sequence

CACACACACACACACACACACACCTTGTGTCGGTAAGGACGGAGGCCTTGTTCAAGTTAGGCCA
GCACTGCAGTAGGACTGAGCGATCACCCATTGGGATAACTGTTCTCTGAGCCCTGTTTGCACTC
ACCTCAGAGCTATGGTGAGAGCAGTGTGCTGCACATAGTGTGGTGCAACCCACACAGGCGCTCA
ACTGCTGCTGTCTCATCTTCTGCCTCCATTTGGAAACTCTAAGGCCTTCTAAGACGTTGTGGGG
GGTCTTTTAAGTTAAATTGACACACTGTACCAAAGTGTTTGGAAACAGTGTTTTGTTGCTCTGG
GGTTGGGGGAGGCTTCCAAAGAGATAACTGACGCCCCTTTCAGAGACTTCTCAGCCACTTCTTG
ATTGCTTGCCTTTGTGAGCAGCAACATTGTTGCAGTATATCAGCCCAGGTTAGTATCTTTAGTT
CCCGGCCTCCACATCCCTGGGAGATGGAGAATTTTTGCTAAGTACCTAGAATAATGGATGGATG
GATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGATGGACGGAATGTAATAGTCATA
GTCGACCTCAATCTCGCTTCCTCTCCTGAAGCAAATCAATCACCCTTTGCATTCTCTCTCCCCA
GAATTTTATTTCATTCTCTCCTAAGAAATATCACCACACCACATGCCTCACTTCTTCAGGCCCG
CCATGTTGTCAGCATCATTTTCTAGTGTTACTCAGTCCCTGTTCCTTTTTTCCTGGTGTTTCCT
AGGGAAAGTCCTTTGCTTTTCATCTTAGATGATCTCAGTGCCAAGTCCAGCGCTTTCTCATATT
CTATTCACAGGAAATGGGTGCATTTGTTTATGTTCAGCAGTACATACATTAATTAATTGGATTT
AGCTATTTTACAATGTATACATTTTTTATTTCATGGGATCTGTACATATGGTGCCCGGCCAGCA
ATCACAAAGCCCCCAACGTTGAAAAATAATAGTGCAATTGTGATATTAGTTGATGCTTAGATGA
TCTTGCACATGTAATTTAGCAACAACTTTTCACTCAGATCATAGAGCATGAACATTTCCCCCCC
ACATATAATAAAATGCCCAAATACTCTGCTCCATTGACTAGTAAGAGATTCATCATCCATCGTG
TGTCCTCGCCTAAGTACCTCATCACTGCTGGGTATTAATAAGCAATACTGGAATGACAGTCTTA
AAAATAAAAGTCTTTGCTCTGCACAACAGTGCAGGTATGAGGAAACCATGGTGAGGTCCTGGCT
CTGGCTGCCACCAAGGGGCATGTCTGGGTCCATGGCCCTGCTGCAGCTGGAGTCTGTGTTGATG
TCTGTGGCCCAAGTTGCCATCAAAGTCCAAGGGGTGTCGATGGTCTGGGCTGTCACAAGAGACC
ATCTTTGGGCCATGCTGTTGTGGGGAGGGGCATGCTAATCTGAGTCACCTGCACTGCCACCTGA
GGCCATGGGACATCTGGGGCCAGGCCTCTGGCAGGTGCCATGTCTCAGTCCATGGTCCTACAGT
AGCCAGGCTCTGTGTTGATGTCCCATGCCATGCAGATGTCTCTGGTCTAGACTACTGCCTGAGG
CACCATGCTGAGCTGGCCTCGCTCCTCACCTAGGCAGCACAGCAGAGCTGATCCTGACATCAGG
GGAGCTGGTTACCAACCTCAAAGTCATGAGAGTGGAAGAGCTGGGTCCACGCCTGGCTTCAGTA
CTCAGGAGAGCAGGCCTTGCACCTTACTTGAGCAGTACTGTAGCGCTGACTCTGGTCAAAGGTG
TGCAGGTGAGCTACACCAAGAGCATGAGCATGGGAAAGCTGACCCTGCCCCACAGTGACTCTGG
TATTGGGTGAACTAGTTGGAACAGGACTGGAAAGCTTGTCCTAGTGGTTCTGGCACAGAAGAGT
TGGCAGGCTGACCAACTTAGCTACCTTTCAGGTCCAGATCAAGGGCTTTGAGTTTGGCCAACCC
CAAAATCTGCCCCATGATCTGCTGGAGCATGTGAGAGGGCCAGTCCTGCAGATCCAAAGCTGCA
GGATCTCCATGAGACAGGGCAACTACAGGATATCCGAGAGGAGTCCATGTGAGGATCAAATATA
GACAGCACAGCAGAAACCAGAGGCCTCGGAATAGACCAAGGACTCACTGCAATGAATATTTGCA
AGTAAAAATGTGTGGACAAATGGGTATACCGTGGGACACACAGTAACATACCGCATCTTCCTTG
ACACCATTTTCTTTTTTATTCCATCCCATTTTCCTTTTCTTTTGCAGGGTAGGTTGCAAGGACG
GAGGGTGGATACAAAGGGATGGGGGAGATGAATGGAATTGGGGTGCATGGTGTAAAATTCACGA
AGACTCAATAAAATGGTGGAAAGGGAAAAAGAAGTATTTGCTCAAGTTTCTGGTGATTTCTGTA
GAAAAATCGCTAGAAGTAGAGGTCAGAGCTATTTTGAGGCTCGCCACACAGACTGCCAAGTAGC
TTTCCAGTAATGTGTACCAATTCCATCCCCTTCCAGCTGCAGCAAAGAGCCTATGGTTGGCAAG
TGCCGCACGCTTTGGCTGGGGGAGGGGTTCTTGTCCATCCAAAGCCTCCAGGCAGTCGTGACAA
TGAATCCCTTGTCCTGCCCAGCCCATCCCCTCTCCCGACGCTGGCCTCCATTCCTGGTTCTAGG
CTGTGTTGTGTGAGGTCTCTGTTCAGATCTGTCCTGTCCTTTGGTACTCTGGGCTACCTCCCGG
AGCAGGACTGGAAGAACTGAAGGGCCCTCATGAATCCCCGAAAGAAAGTGGACTTGAAACTTAT
CATTGTTGGTGCACTTGGTGTGGGAAAGACCTCTCTCCTTCATCAATATGTACACAAGACATTT
TTTGAGGAATACCAGACCACACTGGGGGCCAGCATCCTCTCCAAAATTATCATACTGGATGACA
CAACTTTGAAGCTGCAGATCTGGGACACAGGTGGTCAAGAGCGGTTCCGCTCAATGGTATCAAC
ATTCTACAAAGGTTCCGATGGCTGTATCCTGGCATTTGATGTTACTGATCCAGAGTCCTTTGAA
GCCCTGGATATCTGGAGGGATGATGTCCTGGCAAAGATCGTCCCTATGGAGCAGTCATATCCCA
TGGTGGTGCTGGGCAACAAAATCGATCTGGAAGATAGGAAGGTGCCCCAGGAGGTGGCCCATGA
ATGGTGTAAAGAGAAGGACATGCCATACTTTGAAGTTAGTGCGAAGAATGACATCAATGTGGTG
CAGGCCTTTGAGGTTCTGGCCAGCCGGGCTCTGTTGAGGGTGAGTGATGCAGTAGTGGAACCAG
TCAGAACTGCCCTAGGCGGGATCCTCAGGATCTTCCAAAGGAGAAAATGCGGGCGTAGATAAGG
GCATGGAGAGGATAGGAGTTCTCATTGTCTTCATTATTCGGTAGTTGAATGGGCTTAGCAATTC
TGGTGCCACAGAAGCCAGAGGTGTAAGTACCTGGGAGTAAGCGCTTAGTTGGTTTTGCAGTCTG
GCCAGCTACCACAGTCCCTTGTTACTGATTGATGCTGGTCGTAGGTGCTGCAGTAGAGAGAGGC
GCTCACCAAGATGCTAAGCCTTCATTTTTCTGAAGGAGCAGAAGGGTACAGCCTCTTGAAGAAG
GCTGTCACCCAGCCAGCTCACTCCAGTTACTTTATTCAAATATTATACAAGGTTAATTGGGGCT
GGGAAAGGTTCCAACTATCAACGTTGCCTTGCCCTTGCTGCCTGTGTGAGCAGACAACCCACAT
GGATCTCGGTCCCTTTTGACCATAGCTGGCCATAATCAAAAGTAAGAACTCCAGGTTTGCCAGC
AGTGTCTTAGGATCAAGATTAGTGCATCTGTAAGCACCAAGTGCAGACCTTGTAGACAGAGAAC
ATTTTTTCAAGGGTCAAATAGTCTCATAACAACTTCTCAGCCTCTACTGATTGGCCCAAACATA
GCAAAGGCTTGGCTGAAACATTTCACTCAAAGCCAGACACAAATGTCTTACTATACACATCACT
CCATCTTCCCGCATTTTTTGTTTTAAGCAGATCTGCAAGGGATAACAATTATTGTTGGAGAATG
ATGGAGTTACACAGTAAACGTGGCCTTTGTCTATCTAGTTGTCTATCATTCTATGCAAATAAAT
ACACTTCAAAGCCAATAAAGTTGTCACCACAAAGAGAATTATAAAAATCACGAGAGCAAGAAAC
TTAGCAAAATGATTCATGGGATGAAATGAAGTTACACCATCCACAAGACATACTATGATGTTCG
TCCCTGCTCTAGTAGGCAGCTTCTTTGAAAAATGCTTCTACGGTTTCTTGCTGCAAATCCTAGA
TCATTTGAGAAGAATTAGGACGACCTAACAAATGCATTTTAACCTTCTCCCAGTCATACTTGCT
GTCATTGACCCTTTCAATGTCACTTGATCCCTTAATAGTTCTAATTGACCTCCAGTGAGTATTT
CAGCTCGTCTCAATACTCCTCTGTCATCAACTGTTTCCCTGTCTATCTTGTTATCGAGTCCAAA
GTTCATAAGAATGCATACACCAGTCTTTAACAACTTCAGCAGTTCGAACTGCTTTATGAGGGGA
ACTCTAGCTGTGACAGCTAATGCGACGATTCCTAGGACCTCGGTGATTATCCTTCCACCATCCT
CTGAGTCCTTAATATTCTTTCAGCAAGCTTCCACACGAGTGTCACCACAGGTGAGTCTTGCCAT
GGTCTTGACGGTCTCACTGGCTTGCTGGTCTTGCTCTGAGAATATATTCACCTTCAAACGCAAA
GACATACTAGCGTCGACACAGTTATGAAGGGTACAGCATGTGCATGTGAGGCTATAATCATTAG
GGTACTTTTATAATCATTAAGGTCTTTTCAGTAACACCTTGTGGAGTGTCTAAGAGCTTCCGTC
CTGTGCCTCACACTGGAGATTCTAATTCAGTGGAGATTTCAGAAGTGATCTCTAGGCCAGTCCT
CACGGCGGGATAGAAGTCTCTTGGGACCAAGCATTCATTTAGTCGAGTGGAATCCACAGCCTAT
AGGAGTTGCTGACAGCCTCTCATCAGACAGATGAATAGATCCAGGTGCTTCAATATGATGGCTT
TAAAAGCTTGTGTAGAGCGCAGCATGTGTGCCCAACATTGTCCAGGCAGCAAAGGTAACCACCG
TCAGAGCAGTGATTTGAAATGGAGAAAACGAACAAGGGTGCTTAAGAGACTAGAGGCATCCTGT
AGGTGGAAATGGGTGCCCTCACCGTGGGTGACCTACTGACTTGCATGACCCATGCTGTCCTGAA
GAGAATGCCTCAAGACCCTGTCGGTAAAGACAGGCAGCCTTTGCCTCCAGCAGCTGCACAGGGG
ATAAGTTAAGAGCTTTCTCAGTTCGCGTGGCCCAGCCTGGACCTCAGGTCAGCCTTCAGCCCTC
ACTGCTTCCTGTGAAGGAACAGCAGAGAGTAGCAAGGGCTGTAAGCATGGCTTTGCCACACAGT
CAGGAACGCTGGCTCCTAACATGCAGGTGAGCCTGCCTGTACCATTAGCCAAGACAGCTTATCA
CAACTTACCAGGATTGTGTGGTACAATTATGGCTAAACAGTCGGTTGCATGGAATCTTCCACAG
CCCACTGCCAGTGTGTATATGTGGTTATCATACGTCCCTCCCAATTTGGGAGTTAAAGCACAAC
CTTCCTACTGTTACATTTTAATCACGTGAGGCCATTAGCAGGTGGCAATTGTCTGCTTGTTCCT
GTTAAAATCCTTTCTCTGCAAATAAAAGGAGCTTGGTGACCTCATCACAGTTCCTGATCCTCGT
ACAGGAAACTGAACTGAGGTCCGGACGTCACAGGCACGGTGGCTGCAGACAGATGGATCTCGAT
AAAGTCCTGTCCTGGTAGCTTCAGATGCATACCTGTCAAAACATTCGACTGATCCGTGCCTCAG
TTTCCCTACCTATAAAATGAAAACAATCCCATCCCATAAACACATCCTGAGCTGCCATGAGAGG
GCTCATGATAGGGTCTCATTGCAGTCAGGCTCAGGGGTGTGGAAGTCAAGCCTTAGCTCTTCCT
CCCTGCCCCATGATCCCAAGAATAAGACTCAGACTCAAAATATATTTACAGATACCTTGGCCAT
ACCGAGGCTCTTCTCTGACTAGATATAACTTAACGTTTCCGATTTATTCTAGCCTACATTCTGC
CTCATGTGCTCAGGTTCCACCCGTCCATCTCTTCACATCTTCCCAGCGAATCTTCCGCCTGGCT
CTATCCCAGAATCCTTTTTGCTTCCCGGATTTCCCACCTCTATTTCCTGCTTAAGCCATAGGCC
ATCGGCTTTTTAATTGACAGGTGTTGCATCCACACAACACACAAGATATTCTCTCTCCACAGGA
ATGTGACACCTGAGGGCAACAGAGTGAAGCCGGAGACTGTAGTGAAGGTGGGGTGACTCGGAGG
CAGCTGGAGGCAAGGGGAACAAGGCGGCCATGTTTCAGAGGCAGCGTGTTTAGAAAGTGTTTGC
AGGTAGATTCGGCAGGTCTTTGGAGATGTGGGGAAGAAGGAAAGAAGGGCAGAGATCCGTGGCC
CGGGCTTCAATTCATTGGGGCTCGTGCAAGAAGTCAACTATGAGTTTAGTTTACGAGAGAAGAA
GATGCGGTGTTGAAGAGGATGAGGTCAGAGGACAATAGGGGTGGTAAAGCCAGCAAGGCTTCTG
AGGCTATGGCGGGTCACAGGAGGTGAGACTCAACACTGAAGAGCCAGGGCTTCCAGCAGGTGGC
GCTGGGGTGTCCATCGTGCTCAGGTGCCCAGGACACTGGTGCCCAATAGGGCACATCTTTCAGC
AGTGTATATGCACTTAGAATTAGAAATTTCCCACCAACATGTTATAGGATGGAATGTAAAATCC
ACATGGATTTTAATAAACATCTTTACATGTTTGCAAACATATTTTGACATTCCCTCCAACGATC
TGGCCCTTCTTTTTATTTCTTCTTCTTCTTCTTCTTC

hide sequence

RefSeq Acc Id:

XM_017598905 ⟹ XP_017454394

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,673,396 - 45,699,798 (+)	NCBI
mRatBN7.2	13	43,121,168 - 43,146,844 (+)	NCBI
Rnor_6.0	13	48,456,145 - 48,483,714 (+)	NCBI

Sequence:

show sequence

CCCTGGCCCAGCCTCTTTTGCAACTTTCCCAAGTCTGTGCACAGAAACAGAGGAGGAAAACTCA
GAGGGAAGTGGCCTCTCACCAAAACCGTTTACGTTCTCAATACTGGCCAGATTGAAACTGCCAC
TCAGGGAAGAGAGGCCCAGACCCAGAACTCCCACCTGTGTGAGGCCCTCATGAATCCCCGAAAG
AAAGTGGACTTGAAACTTATCATTGTTGGTGCACTTGGTGTGGGAAAGACCTCTCTCCTTCATC
AATATGTACACAAGACATTTTTTGAGGAATACCAGACCACACTGGGGGCCAGCATCCTCTCCAA
AATTATCATACTGGATGACACAACTTTGAAGCTGCAGATCTGGGACACAGGTGGTCAAGAGCGG
TTCCGCTCAATGGTATCAACATTCTACAAAGGTTCCGATGGCTGTATCCTGGCATTTGATGTTA
CTGATCCAGAGTCCTTTGAAGCCCTGGATATCTGGAGGGATGATGTCCTGGCAAAGATCGTCCC
TATGGAGCAGTCATATCCCATGGTGGTGCTGGGCAACAAAATCGATCTGGAAGATAGGAAGTAC
CAAGGCATTGCCGAGAATCACCTTGCAGACTCCATCAAGCTCTCTCCGGGCCAACCAAGGAGCA
AATGCTGCTGATCCTGGACCCCCTCCTTCCAGACTCCTGATGCTCAATCCCTCAAGCCCGTAGT
CAGCGAGGAGACTGAGCCACTGCAGCAGGAGAGACTGTCACAAGGCAAACCCTGGCTCCAGAGA
AATCATGGGAGTCTTGATGACTCAAGCTTTTCTTTCTCCTCTCCTCCAACACAATCCTGCGAGT
CTCTGGAGACAAGCCTCTCCCTTGAGCACTGAGGAGCTTTGGATGGAAATGCACCTCTGACTCC
CTCAGCAGCCAGGACACGGACCGCTCCTGACAGGCAGAAGCCTACAGGCCTGAGACTTCCCACG
GCTTCTTCCAAAGAGAGCTGAGGGAGCAAGATAAAACCAGTTGTTCCTGCTTCCTGGGTGTTCA
AACGGCTTCCATAACTGACCAGGCCTCAGTGTGCCCTCTGCCAAATGAGAGCTCCCCAGGTTCC
CCATATCCCAATGTGAGTTGAGGACCATAAACTCCATTTAAATCTCACTCACTGGTGTGGCCAC
ACACGTTTACTCCTTCGGCAAGCATTTTGTTGCCTTCTACGTATGGTGCGTTGATGTCTGGAAA
CACACAAAACAGGCAGGAGTCCTGGCCTCCCAGAGGCACACCTGGAGACAGAGGGACAGACAGC
AGGCCACCAGCAGGACAGAGGACAGCAATGAGGTGCTATTTTAAACAAAGGGGCCAAGCAGGCT
TCCCTGTGATGTGACAGTTGGGCTGACAGTTACAGTGCAAGCTACAGGAGTCAGGAGAGGGAGC
AGCAAGGCCAAGGCCCTGAGGCATTAGACAGCTACTTTCCATGTGAAAGCTCTTTCCCTGAGGA
CTCAAAGCTGCTGCCAGTGATATCCTGTTCCCAGAAGGTGCCTTGAGCATTTGATGACTGGCCA
CTAGGGGGCAGAAGTGTCCTCTACTTCCAGGCCAGGGAGTTCTGGGGATACTTGAAAAGCTGGT
GTTTCTGTCAAGAAAATGGCTGAAACATGTCCCCAGGCTGTAGGAATGTCAGACCTGGGCTAGT
TGGGTAAAAAAAACAAACAAACAAAAAAACAAAACAAAACAAAAAACCTTCAGGATACTTGATT
CAGGGAACAAATCAAAATCAGTAACAGATCCCAGAGCAAGCTACGTAGAGAGATATGGATTCTG
TGTCCTGTACATTTCAAAGCTAGAACCTGGTTTTTTTTTTTCTTCTGGCTTCACACAGCACAGA
TAGGTTGGCCCATTCTAAAAATGGTAGACGGGATGAACTCTCAAGATCTACAATGGTCAGGTTC
ATACCTCATGCCTACCAGACATTCCTGTCTCCACAGAAGTCTTCTTTTCTGAGTTCCGAGCAGA
TCAGAGGTATTCATCTCTAGGAAGCAACTGACCCCAAAGATTTCACTGAGAGGCAGGTAGTCAG
GGGGCACCAAGCGGAGGTCCTGGGGTCCCTGTCTGTCCCCACCTAGCTCTGAAGGATAAAGCAA
CTCCCCATGGGCAGTGGTCACAGGAACAGTGAGCCCTGTGTCCCTCAGAGATGAATGATTTGTC
CCTGTCATACACAGGTGTGGCTCTCCTGGAAGTCAGACGGTGGAGGGATGTGTGGTATGGGGAA
GGGGGGAGGGGGGAGAGTTCAGCACCACAATGAACACAAGAACCATATTTAAAGTTACACAACA
AATAGTGTTTCCTGTTTTTAATCCTTTGTGGGACAATAGTCCCCCTTGGTCTGTGATGCCAGTC
TCAGTTACCCGTGGGTCAACTGTGGACCAAAAATATTAAGTAGCAAATCCCAGAAATAAATAAC
TTATAACTTTCAACGTGTGTGTCACTTGAAGTAGTGTGGTGAGCTCCTAAGCCATCCTACCAGG
CCAGTCACTCCTCCCCCTCTATGCGGGGCATCTAACCCGGCAGTTACTTTGTAGCCGTCTCAGA
TGTATCAACCGCCATCATTCCAAATGCCTCTATTAATAGCAACCTAAAGTTATGCCACAGTGCC
CTTGTCACTATCTCATTGCCCAGATATGCCATCAGCCCATGTTGTCACAAGAGGATAAGGCTGA
GAACAGTACAGTAGTTTTGAAATATGCATTTATACCCTTTTATTGCTTGTACAGACTCATAGTC
ATCTATCATCATATTACTGTCCATCTCGTGCTGTACCTAATTTATTCACAGAACTTGGTCATAG
GCTTGTGGATAGGAGGTAGCATAGCACCTGGGAGGGGATTAGTACTATGTGACTTCAGGCATCA
ACTGGGGGAGGGGGATGTCCAGGAGTGTTTCCTTGGATAAGGAGAGACTGAGGTGCTTGCATTT
TAATTTAACAAAACGTATCAGCATATTCTGACATGTCAACAGTGTCGCAGGTAATAAAAGCTGC
ATCATTTCCAGGACCATGTAATGAAATGAGATTGTTCGAAAATTAAGATTTCAAGACAGCAACA
ACAGCATCCGACATTAGAGGCGAGCCCTCCTGAGGACGCATCTCCTCACGAGGTGCTCTTGAGA
AAGCAATGAGCTCTCAGCTAGATGGAGCTCTGGCCTCGCCCTGCTGGACATGCTGCAGCTTGAA
GGAAAGGCTCTGTACAGACTAAATATTCCAAATGGGAGCAGGGACCCGTGGGCCTGGAGACTCA
CAAATATCCTGTTATAACCGGGAGATGTGCTGGTCGATCCGCAGGGCTGAGTGAACTGAGTTGA
CAATAAGGGTCCCGGTCAGCCATTGCAGCCCGACTACGACCCTGAGTCGGACACTGGCCCATGC
CAGCAGGCACAGGAACTTCAGCCCACCATAGCAGCTCCCACTGGAGGCCCAAGTTGGGGGTGGT
GGCATCATATCCTAAGCCCTCCTCATAGCCATCGTTTCAAGAAAAAGACCTGTGTCAACAGGAT
CTGTTGATCCTGCTCTCCACAGCCTGTTCAAGGGGAGCACCCTGGGCTGCTGCTCAAGGGTAAG
AACTCAGCCCAGGACTCCTGTGGCAATGTATCCTTGAGGCCTGGGTAAAAATCAAAGCCAAATC
TTATCACCAAACAAACCAGGCTTGGACGCTAGGCCCTGCCCGCCCTCTATTTCCAGGGACTTGG
GAAAATGCCCGTTTCTCCTGCTGTTTGCTCCCACACAACGGAGCCTTCCTACTGCGCCCAGTTG
GTGGGCCATCTATCCCTCAGCCTCGAACAGCTTCT

hide sequence

RefSeq Acc Id:

XM_063272554 ⟹ XP_063128624

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	13	45,675,053 - 45,699,798 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001102798	(Get FASTA)	NCBI Sequence Viewer
	XP_008767713	(Get FASTA)	NCBI Sequence Viewer
	XP_008767714	(Get FASTA)	NCBI Sequence Viewer
	XP_017454394	(Get FASTA)	NCBI Sequence Viewer
	XP_063128624	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	EDM09818	(Get FASTA)	NCBI Sequence Viewer
	EDM09819	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000009280
	ENSRNOP00000009280.3
	ENSRNOP00000081874.1
	ENSRNOP00000088975
	ENSRNOP00000088975.1
	ENSRNOP00000094821.1

RefSeq Acc Id:

NP_001102798 ⟸ NM_001109328

- UniProtKB:

D4A7A8 (UniProtKB/TrEMBL), A6IC29 (UniProtKB/TrEMBL), A6IC28 (UniProtKB/TrEMBL)

- Sequence:

show sequence

MNPRKKVDLKLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDT
GGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIVPMEQSYPMVVLGNKIDL
EDRKVPQEVAHEWCKEKDMPYFEVSAKNDINVVQAFEVLASRALLRYQGIAENHLADSIKLSPG
QPRSKCC

hide sequence

RefSeq Acc Id:	XP_008767713 ⟸ XM_008769491
- Peptide Label:	isoform X1
- UniProtKB:	D4A7A8 (UniProtKB/TrEMBL), A6IC29 (UniProtKB/TrEMBL), A6IC28 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNPRKKVDLKLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDT GGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIVPMEQSYPMVVLGNKIDL EDRKVPQEVAHEWCKEKDMPYFEVSAKNDINVVQAFEVLASRALLRVSDAVVEPVRTALGGILR IFQRRKCGRR hide sequence

RefSeq Acc Id:	XP_008767714 ⟸ XM_008769492
- Peptide Label:	isoform X1
- UniProtKB:	D4A7A8 (UniProtKB/TrEMBL), A6IC29 (UniProtKB/TrEMBL), A6IC28 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNPRKKVDLKLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDT GGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIVPMEQSYPMVVLGNKIDL EDRKVPQEVAHEWCKEKDMPYFEVSAKNDINVVQAFEVLASRALLRVSDAVVEPVRTALGGILR IFQRRKCGRR hide sequence

RefSeq Acc Id:	XP_017454394 ⟸ XM_017598905
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A7M1 (UniProtKB/TrEMBL)
- Sequence:	show sequence MNPRKKVDLKLIIVGALGVGKTSLLHQYVHKTFFEEYQTTLGASILSKIIILDDTTLKLQIWDT GGQERFRSMVSTFYKGSDGCILAFDVTDPESFEALDIWRDDVLAKIVPMEQSYPMVVLGNKIDL EDRKYQGIAENHLADSIKLSPGQPRSKCC hide sequence

RefSeq Acc Id:

ENSRNOP00000009280 ⟸ ENSRNOT00000009280

RefSeq Acc Id:

ENSRNOP00000094821 ⟸ ENSRNOT00000103032

RefSeq Acc Id:

ENSRNOP00000081874 ⟸ ENSRNOT00000113839

RefSeq Acc Id:

ENSRNOP00000088975 ⟸ ENSRNOT00000109645

RefSeq Acc Id:	XP_063128624 ⟸ XM_063272554
- Peptide Label:	isoform X2
- UniProtKB:	A0A8I6A7M1 (UniProtKB/TrEMBL)

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-D4A7A8-F1-model_v2	AlphaFold	D4A7A8	1-199	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562617	AgrOrtholog
BioCyc Gene	G2FUF-18342	BioCyc
Ensembl Genes	ENSRNOG00000039754	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000009280	ENTREZGENE
	ENSRNOT00000009280.6	UniProtKB/TrEMBL
	ENSRNOT00000103032.1	UniProtKB/TrEMBL
	ENSRNOT00000109645.1	UniProtKB/TrEMBL
	ENSRNOT00000113839.1	UniProtKB/TrEMBL
Gene3D-CATH	3.40.50.300	UniProtKB/TrEMBL
InterPro	P-loop_NTPase	UniProtKB/TrEMBL
	Ras_GTPase	UniProtKB/TrEMBL
	Small_GTP-bd	UniProtKB/TrEMBL
KEGG Report	rno:501854	UniProtKB/TrEMBL
NCBI Gene	501854	ENTREZGENE
PANTHER	RAB FAMILY	UniProtKB/TrEMBL
	RAS-RELATED PROTEIN RAB-7B	UniProtKB/TrEMBL
Pfam	Ras	UniProtKB/TrEMBL
PhenoGen	Rab7b	PhenoGen
PRINTS	RASTRNSFRMNG	UniProtKB/TrEMBL
PROSITE	ARF	UniProtKB/TrEMBL
	RAB	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
RatGTEx	ENSRNOG00000039754	RatGTEx
SMART	RAB	UniProtKB/TrEMBL
	RAN	UniProtKB/TrEMBL
	RAS	UniProtKB/TrEMBL
	RHO	UniProtKB/TrEMBL
Superfamily-SCOP	SSF52540	UniProtKB/TrEMBL
UniProt	A0A8I5ZVT9_RAT	UniProtKB/TrEMBL
	A0A8I6A7M1	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6ANP1_RAT	UniProtKB/TrEMBL
	A6IC28	ENTREZGENE, UniProtKB/TrEMBL
	A6IC29	ENTREZGENE, UniProtKB/TrEMBL
	D4A7A8	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-04-30	RGD1562617	similar to RAB7-like protein	RGD1562617_predicted	similar to RAB7-like protein (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1562617_predicted	similar to RAB7-like protein (predicted)	LOC501854	similar to RAB7-like protein	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC501854	similar to RAB7-like protein			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)

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Imported Disease Annotations - ClinVar

Imported Disease Annotations - CTD

Imported Annotations - KEGG (archival)