Vwa3b (von Willebrand factor A domain containing 3B) - Rat Genome Database

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Gene: Vwa3b (von Willebrand factor A domain containing 3B) Rattus norvegicus
Analyze
Symbol: Vwa3b
Name: von Willebrand factor A domain containing 3B
RGD ID: 1562560
Description: Human ortholog(s) of this gene implicated in autosomal recessive spinocerebellar ataxia 22. Orthologous to human VWA3B (von Willebrand factor A domain containing 3B); INTERACTS WITH 6-propyl-2-thiouracil; atrazine; bisphenol A.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC501126; MGC156769; similar to hypothetical protein MGC26733; von Willebrand factor A domain-containing protein 3B
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,746,307 - 46,915,436 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl946,746,342 - 46,915,436 (+)EnsemblGRCr8
mRatBN7.2939,249,523 - 39,419,614 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,250,430 - 39,419,611 (+)EnsemblmRatBN7.2
Rnor_6.0943,607,066 - 43,779,466 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,607,669 - 43,779,463 (+)Ensemblrn6Rnor6.0
Rnor_5.0943,253,497 - 43,425,216 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4935,962,036 - 36,125,741 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera937,007,813 - 37,176,976 (+)NCBICelera
Cytogenetic Map9q21NCBI
JBrowse:




Disease Annotations     Click to see Annotation Detail View

Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytosol  (IEA,ISO)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Vwa3b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8946,746,307 - 46,915,436 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl946,746,342 - 46,915,436 (+)EnsemblGRCr8
mRatBN7.2939,249,523 - 39,419,614 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl939,250,430 - 39,419,611 (+)EnsemblmRatBN7.2
Rnor_6.0943,607,066 - 43,779,466 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl943,607,669 - 43,779,463 (+)Ensemblrn6Rnor6.0
Rnor_5.0943,253,497 - 43,425,216 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4935,962,036 - 36,125,741 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera937,007,813 - 37,176,976 (+)NCBICelera
Cytogenetic Map9q21NCBI
VWA3B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh38298,087,167 - 98,330,616 (+)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl298,087,116 - 98,313,299 (+)Ensemblhg38GRCh38
GRCh37298,703,630 - 98,929,762 (+)NCBIGRCh37GRCh37hg19GRCh37
Build 36298,070,027 - 98,295,842 (+)NCBIBuild 36Build 36hg18NCBI36
Celera292,907,511 - 93,133,132 (+)NCBICelera
Cytogenetic Map2q11.2NCBI
HuRef292,468,832 - 92,694,531 (+)NCBIHuRef
CHM1_1298,707,922 - 98,933,729 (+)NCBICHM1_1
T2T-CHM13v2.0298,545,383 - 98,788,821 (+)NCBIT2T-CHM13v2.0
Vwa3b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm39137,068,372 - 37,226,689 (+)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl137,065,677 - 37,226,694 (+)EnsemblGRCm39 EnsemblGRCm39
GRCm38137,029,158 - 37,187,608 (+)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl137,026,596 - 37,187,613 (+)Ensemblmm10GRCm38
MGSCv37137,086,149 - 37,244,122 (+)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv36137,098,390 - 37,132,150 (+)NCBIMGSCv36mm8
Celera136,804,738 - 36,965,147 (+)NCBICelera
Cytogenetic Map1BNCBI
cM Map115.46NCBI
Vwa3b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_0049554704,658,197 - 4,850,336 (+)Ensembl
ChiLan1.0NW_0049554704,658,088 - 4,850,277 (+)NCBIChiLan1.0ChiLan1.0
VWA3B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v21230,127,506 - 30,354,109 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12A30,130,268 - 30,356,891 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02A100,995,476 - 101,221,328 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12A99,001,077 - 99,226,175 (+)NCBIPanPan1.1PanPan1.1panPan2
VWA3B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.11044,279,047 - 44,508,129 (-)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl1044,305,262 - 44,508,139 (-)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha1044,201,547 - 44,430,816 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.01045,152,236 - 45,381,567 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl1045,178,428 - 45,381,569 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.11044,862,497 - 45,091,710 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.01045,153,560 - 45,383,065 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.01045,329,205 - 45,558,780 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Vwa3b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440629284,027,440 - 84,213,494 (+)NCBIHiC_Itri_2
SpeTri2.0NW_0049367441,280,438 - 1,466,425 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
VWA3B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl355,950,591 - 56,171,718 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1355,949,534 - 56,173,597 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2358,552,120 - 58,716,317 (-)NCBISscrofa10.2Sscrofa10.2susScr3
VWA3B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1141,804,752 - 2,039,785 (+)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl141,812,852 - 1,985,116 (+)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_023666041169,297,543 - 169,559,074 (+)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Vwa3b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_0046247493,204,463 - 3,421,806 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_0046247493,106,165 - 3,421,679 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Vwa3b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v14113,226,681 - 113,389,453 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Vwa3b
1454 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:70
Count of miRNA genes:58
Interacting mature miRNAs:66
Transcripts:ENSRNOT00000052054
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
2303170Bp332Blood pressure QTL 3323.730.027arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)9671488884474983Rat
631211Bw4Body weight QTL45.31retroperitoneal fat pad mass (VT:0010430)retroperitoneal fat pad weight to body weight ratio (CMO:0000635)9534647950346479Rat
7411571Bw138Body weight QTL 13814.30.001body mass (VT:0001259)body weight gain (CMO:0000420)94002992585029925Rat
2303559Gluco54Glucose level QTL 542blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)9875049253750492Rat
1300180Bw14Body weight QTL 143.776body mass (VT:0001259)body weight (CMO:0000012)93125043268875676Rat
8662828Vetf6Vascular elastic tissue fragility QTL 63.9artery integrity trait (VT:0010639)patent ductus arteriosus score (CMO:0002566)94445825699506504Rat
61450Ciaa3CIA Autoantibody QTL 36.5blood autoantibody amount (VT:0003725)calculated serum anti-type 2 collagen antibody titer (CMO:0001279)92956766474567664Rat
1598834Memor11Memory QTL 112.5exploratory behavior trait (VT:0010471)average horizontal distance between subject and target during voluntary locomotion in an experimental apparatus (CMO:0002674)94445825685262605Rat
70186Niddm26Non-insulin dependent diabetes mellitus QTL 263.87blood glucose amount (VT:0000188)blood glucose level area under curve (AUC) (CMO:0000350)92956766483835942Rat
70218Cm28Cardiac mass QTL 288.30.0001heart mass (VT:0007028)heart wet weight (CMO:0000069)94172029586720295Rat
1641911Alcrsp13Alcohol response QTL 13response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)9621499551214995Rat
1354650Despr5Despair related QTL 54.010.0017locomotor behavior trait (VT:0001392)amount of time spent in voluntary immobility (CMO:0001043)9875049253750492Rat
2290450Scl57Serum cholesterol level QTL 574.15blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)944458256121768150Rat
7207805Bmd88Bone mineral density QTL 884femur mineral mass (VT:0010011)total volumetric bone mineral density (CMO:0001728)93125043265651574Rat
61425Cia15Collagen induced arthritis QTL 154.6joint integrity trait (VT:0010548)joint inflammation composite score (CMO:0000919)9534647950416711Rat
1581517Bp284Blood pressure QTL 284arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)93922018684220186Rat
1600365Mcs20Mammary carcinoma susceptibility QTL 203mammary gland integrity trait (VT:0010552)mammary tumor growth rate (CMO:0000344)92103143049025574Rat
7411656Foco26Food consumption QTL 269.80.001eating behavior trait (VT:0001431)feed conversion ratio (CMO:0001312)94002992585029925Rat
1298088Edpm11Estrogen-dependent pituitary mass QTL 112.5pituitary gland mass (VT:0010496)pituitary gland wet weight (CMO:0000853)9621499551214995Rat
1641894Alcrsp12Alcohol response QTL 12response to alcohol trait (VT:0010489)brain neurotensin receptor 1 density (CMO:0002068)93496059079960590Rat
1598823Memor16Memory QTL 161.9exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)93145606157460683Rat

Markers in Region
RH129611  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2939,332,346 - 39,332,548 (+)MAPPERmRatBN7.2
Rnor_6.0943,689,346 - 43,689,547NCBIRnor6.0
Rnor_5.0943,335,037 - 43,335,238UniSTSRnor5.0
RGSC_v3.4936,038,777 - 36,038,978UniSTSRGSC3.4
Celera937,089,544 - 37,089,745UniSTS
RH 3.4 Map9366.8UniSTS
Cytogenetic Map9q21UniSTS
RH143282  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2939,310,409 - 39,310,548 (+)MAPPERmRatBN7.2
Rnor_6.0943,667,543 - 43,667,681NCBIRnor6.0
Rnor_5.0943,313,234 - 43,313,372UniSTSRnor5.0
RGSC_v3.4936,015,789 - 36,015,927UniSTSRGSC3.4
Celera937,068,237 - 37,068,375UniSTS
RH 3.4 Map9369.7UniSTS
Cytogenetic Map9q21UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 12 58 156 87 86 55 77 55 6 316 168 11 133 70 92 31 12 12

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001419961 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226801 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006226802 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_008758013 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039084535 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267597 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267598 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063267599 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839789 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839790 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001839791 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844904 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844905 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_001844906 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489105 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489106 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005489107 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054625 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054626 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_010054627 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_589219 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_594349 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC125939 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC083640 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC127526 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ214716 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000009 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000023617
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl946,746,342 - 46,915,428 (+)Ensembl
mRatBN7.2 Ensembl939,250,548 - 39,296,628 (+)Ensembl
Rnor_6.0 Ensembl943,613,988 - 43,635,957 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000052054
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl946,876,039 - 46,915,426 (+)Ensembl
mRatBN7.2 Ensembl939,380,215 - 39,419,604 (+)Ensembl
Rnor_6.0 Ensembl943,740,069 - 43,779,463 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000077566
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl939,383,254 - 39,419,611 (+)Ensembl
Rnor_6.0 Ensembl943,740,067 - 43,779,463 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000079735
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl943,761,348 - 43,778,724 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000088239
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl946,746,353 - 46,915,428 (+)Ensembl
mRatBN7.2 Ensembl939,250,548 - 39,418,877 (+)Ensembl
Rnor_6.0 Ensembl943,607,669 - 43,779,078 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089899
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0 Ensembl943,740,079 - 43,766,442 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000090492
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl939,250,548 - 39,293,649 (+)Ensembl
Rnor_6.0 Ensembl943,614,018 - 43,636,046 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000101179   ⟹   ENSRNOP00000079290
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl946,746,342 - 46,915,436 (+)Ensembl
mRatBN7.2 Ensembl939,250,430 - 39,418,877 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000107180   ⟹   ENSRNOP00000089052
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl946,746,353 - 46,915,428 (+)Ensembl
mRatBN7.2 Ensembl939,250,548 - 39,418,877 (+)Ensembl
RefSeq Acc Id: NM_001419961   ⟹   NP_001406890
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,342 - 46,915,436 (+)NCBI
mRatBN7.2939,250,511 - 39,419,614 (+)NCBI
RefSeq Acc Id: XM_039084535   ⟹   XP_038940463
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,307 - 46,865,134 (+)NCBI
mRatBN7.2939,249,531 - 39,369,300 (+)NCBI
RefSeq Acc Id: XM_063267597   ⟹   XP_063123667
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,315 - 46,915,431 (+)NCBI
RefSeq Acc Id: XM_063267598   ⟹   XP_063123668
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,309 - 46,915,431 (+)NCBI
RefSeq Acc Id: XM_063267599   ⟹   XP_063123669
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,311 - 46,863,629 (+)NCBI
RefSeq Acc Id: XR_001839789
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,316 - 46,915,431 (+)NCBI
mRatBN7.2939,249,614 - 39,419,611 (+)NCBI
Rnor_6.0943,607,069 - 43,779,464 (+)NCBI
Sequence:
RefSeq Acc Id: XR_001839791
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,310 - 46,915,431 (+)NCBI
mRatBN7.2939,249,610 - 39,419,611 (+)NCBI
Rnor_6.0943,607,068 - 43,779,464 (+)NCBI
Sequence:
RefSeq Acc Id: XR_005489105
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,310 - 46,915,431 (+)NCBI
mRatBN7.2939,249,614 - 39,419,611 (+)NCBI
RefSeq Acc Id: XR_005489106
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,791,209 - 46,915,431 (+)NCBI
mRatBN7.2939,295,358 - 39,419,611 (+)NCBI
RefSeq Acc Id: XR_005489107
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,836,594 - 46,915,431 (+)NCBI
mRatBN7.2939,340,761 - 39,419,611 (+)NCBI
RefSeq Acc Id: XR_010054625
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,316 - 46,915,431 (+)NCBI
RefSeq Acc Id: XR_010054626
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,309 - 46,915,431 (+)NCBI
RefSeq Acc Id: XR_010054627
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,309 - 46,915,431 (+)NCBI
RefSeq Acc Id: XR_594349
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8946,746,310 - 46,915,431 (+)NCBI
mRatBN7.2939,249,613 - 39,419,611 (+)NCBI
Rnor_6.0943,607,069 - 43,779,464 (+)NCBI
Sequence:
RefSeq Acc Id: XP_038940463   ⟸   XM_039084535
- Peptide Label: isoform X4
Ensembl Acc Id: ENSRNOP00000089052   ⟸   ENSRNOT00000107180
Ensembl Acc Id: ENSRNOP00000079290   ⟸   ENSRNOT00000101179
RefSeq Acc Id: NP_001406890   ⟸   NM_001419961
- UniProtKB: A0A8I5ZMT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123668   ⟸   XM_063267598
- Peptide Label: isoform X2
- UniProtKB: A0A8I5ZMT1 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063123669   ⟸   XM_063267599
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063123667   ⟸   XM_063267597
- Peptide Label: isoform X1
- UniProtKB: A0A8I5ZKI0 (UniProtKB/TrEMBL),   A0A8I6A6E4 (UniProtKB/TrEMBL)
Protein Domains
DUF4537   VWFA

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562560 AgrOrtholog
BioCyc Gene G2FUF-27795 BioCyc
Ensembl Genes ENSRNOG00000023566 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000023617 ENTREZGENE
  ENSRNOT00000023617.7 UniProtKB/TrEMBL
  ENSRNOT00000052054.6 UniProtKB/TrEMBL
  ENSRNOT00000088239 ENTREZGENE
  ENSRNOT00000088239.3 UniProtKB/TrEMBL
  ENSRNOT00000101179 ENTREZGENE
  ENSRNOT00000101179.2 UniProtKB/TrEMBL
  ENSRNOT00000107180.2 UniProtKB/TrEMBL
Gene3D-CATH 3.40.50.410 UniProtKB/TrEMBL
InterPro DUF4537 UniProtKB/TrEMBL
  VWF_A UniProtKB/TrEMBL
  vWFA_dom_sf UniProtKB/TrEMBL
NCBI Gene 501126 ENTREZGENE
PANTHER VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B UniProtKB/TrEMBL
  VON WILLEBRAND FACTOR A DOMAIN-CONTAINING PROTEIN 3B UniProtKB/TrEMBL
Pfam DUF4537 UniProtKB/TrEMBL
  VWA_3 UniProtKB/TrEMBL
PhenoGen Vwa3b PhenoGen
PROSITE VWFA UniProtKB/TrEMBL
RatGTEx ENSRNOG00000023566 RatGTEx
SMART VWA UniProtKB/TrEMBL
Superfamily-SCOP SSF53300 UniProtKB/TrEMBL
UniProt A0A8I5ZKI0 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I5ZMT1 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6A6E4 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AAL8_RAT UniProtKB/TrEMBL
  Q5XIN8_RAT UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2009-12-15 Vwa3b  von Willebrand factor A domain containing 3B  LOC501126  similar to hypothetical protein MGC26733  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC501126  similar to hypothetical protein MGC26733      Symbol and Name status set to provisional 70820 PROVISIONAL