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Gene: C5h1orf141 (similar to human chromosome 1 open reading frame 141) Rattus norvegicus

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Symbol:

C5h1orf141

Name:

similar to human chromosome 1 open reading frame 141

RGD ID:

1562532

Description:

Orthologous to human C1orf141 (chromosome 1 open reading frame 141); INTERACTS WITH bisphenol A; aflatoxin B1 (ortholog); benzo[a]pyrene (ortholog).

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical gene supported by BC079057; hypothetical protein LOC500513; LOC500513; RGD1562532; uncharacterized protein C1orf141 homolog; uncharacterized protein LOC500513

RGD Orthologs

Alliance Orthologs

More Info

more info ...

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	123,229,915 - 123,293,570 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	123,229,916 - 123,293,251 (-)	Ensembl				GRCr8
mRatBN7.2	5	118,000,865 - 118,064,520 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	118,000,866 - 118,064,208 (-)	Ensembl				mRatBN7.2
Rnor_6.0	5	122,766,889 - 122,828,398 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	122,766,879 - 122,828,398 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	126,632,422 - 126,696,246 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	124,174,688 - 124,240,576 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	116,572,207 - 116,635,545 (-)	NCBI		Celera
Cytogenetic Map	5	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

aflatoxin B1 (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

permethrin (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932

Genomics

Comparative Map Data

C5h1orf141
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	5	123,229,915 - 123,293,570 (-)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	5	123,229,916 - 123,293,251 (-)	Ensembl				GRCr8
mRatBN7.2	5	118,000,865 - 118,064,520 (-)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	5	118,000,866 - 118,064,208 (-)	Ensembl				mRatBN7.2
Rnor_6.0	5	122,766,889 - 122,828,398 (-)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	5	122,766,879 - 122,828,398 (-)	Ensembl			rn6	Rnor6.0
Rnor_5.0	5	126,632,422 - 126,696,246 (-)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	5	124,174,688 - 124,240,576 (-)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	5	116,572,207 - 116,635,545 (-)	NCBI		Celera
Cytogenetic Map	5	q33	NCBI

C1orf141
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	1	67,092,165 - 67,141,646 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	1	67,092,165 - 67,231,853 (-)	Ensembl			hg38	GRCh38
GRCh37	1	67,557,848 - 67,600,653 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	1	67,330,447 - 67,366,808 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	1	65,847,829 - 65,884,157 (-)	NCBI		Celera
Cytogenetic Map	1	p31.3	NCBI
HuRef	1	65,666,528 - 65,709,308 (-)	NCBI		HuRef
CHM1_1	1	67,673,269 - 67,716,065 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	1	66,969,681 - 67,019,158 (-)	NCBI		T2T-CHM13v2.0

4921539E11Rik
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	4	103,087,642 - 103,148,141 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	4	103,087,642 - 103,148,060 (-)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	4	103,230,445 - 103,290,954 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	4	103,230,445 - 103,290,863 (-)	Ensembl			mm10	GRCm38
MGSCv37	4	102,903,050 - 102,963,468 (-)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	4	102,728,377 - 102,788,795 (-)	NCBI		MGSCv36	mm8
Celera	4	101,595,061 - 101,648,615 (-)	NCBI		Celera
Cytogenetic Map	4	C6	NCBI
cM Map	4	47.5	NCBI

CUNH1orf141
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0	NW_004955423	23,893,703 - 23,936,230 (+)	NCBI	ChiLan1.0	ChiLan1.0

C1H1orf141
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	1	159,731,531 - 159,787,981 (+)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	1	158,891,368 - 158,948,155 (+)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	1	66,334,088 - 66,377,649 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	1	68,220,376 - 68,262,316 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	1	68,220,376 - 68,254,638 (-)	Ensembl			panPan2	panpan1.1

C5H1orf141
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	5	43,415,677 - 43,452,760 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	5	43,422,852 - 43,452,537 (+)	Ensembl			canFam3	CanFam3.1
ROS_Cfam_1.0	5	43,601,925 - 43,638,085 (+)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	5	43,601,241 - 43,638,087 (+)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	5	43,568,062 - 43,604,236 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	5	43,513,621 - 43,549,979 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	5	43,754,218 - 43,790,401 (+)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

CUNH1orf141
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405058	79,987,088 - 80,037,552 (-)	NCBI		HiC_Itri_2
SpeTri2.0	NW_004936591	4,462,112 - 4,502,441 (+)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

C6H1orf141
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1	6	145,320,017 - 145,506,995 (+)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	6	134,409,977 - 134,464,843 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

C20H1orf141
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	20	65,968,565 - 66,028,479 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	20	65,977,474 - 66,027,860 (+)	Ensembl		ChlSab1.1 Ensembl	chlSab2	Vervet-AGM
Vero_WHO_p1.0	NW_023666033	51,578,006 - 51,618,445 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

CUNH1orf141
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla 1.0	NW_004624742	27,961,520 - 27,994,128 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

C1H1orf141
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	1	51,286,799 - 51,339,573 (+)	NCBI		Rrattus_CSIRO_v1

Variants

Variants in C5h1orf141
191 total Variants

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	207
Count of miRNA genes:	123
Interacting mature miRNAs:	137
Transcripts:	ENSRNOT00000030112, ENSRNOT00000074118
Prediction methods:	Microtar, Miranda, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331796	Thshl2	Thyroid stimulating hormone level QTL 2	2.3		blood thyroid-stimulating hormone amount (VT:0005119)	serum thyroid stimulating hormone level (CMO:0001248)	5	102105698	152749382	Rat
2303586	Gluco52	Glucose level QTL 52	2		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	100826632	145826632	Rat
1549845	Scl44	Serum cholesterol level QTL 44	6		blood cholesterol amount (VT:0000180)	serum total cholesterol level (CMO:0000363)	5	44924861	153890773	Rat
8552960	Pigfal15	Plasma insulin-like growth factor 1 level QTL 15			blood insulin-like growth factor amount (VT:0010479)	plasma insulin-like growth factor 1 level (CMO:0001299)	5	116702075	161702075	Rat
70212	Niddm25	Non-insulin dependent diabetes mellitus QTL 25	3.54		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	5	38207390	136631402	Rat
1298070	Scl18	Serum cholesterol level QTL 18	3.7		blood LDL cholesterol amount (VT:0000181)	calculated plasma low density lipoprotein cholesterol level (CMO:0001245)	5	84630798	129630798	Rat
61452	Ciaa5	CIA Autoantibody QTL 5	3.5		blood autoantibody amount (VT:0003725)	calculated serum anti-rat type 2 collagen autoantibody titer (CMO:0001281)	5	99905133	172190305	Rat
1331801	Rf33	Renal function QTL 33	4.149		kidney blood vessel physiology trait (VT:0100012)	absolute change in renal vascular resistance (CMO:0001900)	5	48523123	134369373	Rat
7411582	Foco3	Food consumption QTL 3	7.5	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	92583776	137583776	Rat
61393	Bp7	Blood pressure QTL 7	4.5	0.0001	arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	65089051	166764498	Rat
1598859	Cm66	Cardiac mass QTL 66	2		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	84630798	129630798	Rat
7207486	Bss109	Bone structure and strength QTL 109			femur strength trait (VT:0010010)	femur total energy absorbed before break (CMO:0001677)	5	112142946	157142946	Rat
7207481	Bss106	Bone structure and strength QTL 106	7.9		femur strength trait (VT:0010010)	femur ultimate force (CMO:0001675)	5	112142946	157142946	Rat
1302790	Scl20	Serum cholesterol level QTL 20	6.4	0.0001	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	110770739	155770739	Rat
1578766	Tcas11	Tongue tumor susceptibility QTL 11	4.12		tongue integrity trait (VT:0010553)	number of squamous cell tumors of the tongue with diameter greater than 3 mm (CMO:0001950)	5	51657967	166600247	Rat
1549838	Bss4	Bone structure and strength QTL 4	9.2		femur strength trait (VT:0010010)	femur midshaft polar moment of inertia (CMO:0001669)	5	112142946	157142946	Rat
1582212	Livw2	Liver weight QTL 2	3.5	0.0004	liver mass (VT:0003402)	liver weight to body weight ratio (CMO:0000633)	5	104018576	124314782	Rat
7411564	Bw135	Body weight QTL 135		0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	92583776	137583776	Rat
8657050	Bw146	Body weight QTL 146	19.84	0.001	body mass (VT:0001259)	body weight gain (CMO:0000420)	5	98972960	143972960	Rat
1576312	Emca8	Estrogen-induced mammary cancer QTL 8	4.1		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	55124766	172190305	Rat
7411601	Foco12	Food consumption QTL 12	19.7	0.001	eating behavior trait (VT:0001431)	feed conversion ratio (CMO:0001312)	5	92583776	137583776	Rat
2303618	Vencon1	Ventilatory control QTL 1	3.8		respiration trait (VT:0001943)	oxygen consumption (CMO:0002169)	5	100826632	145826632	Rat
2317056	Wbc3	White blood cell count QTL 3	2.51	0.01	leukocyte quantity (VT:0000217)	white blood cell count (CMO:0000027)	5	111236572	156236572	Rat
1598846	Bp293	Blood pressure QTL 293	3.9		arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	84630798	129630798	Rat
7394710	Emca12	Estrogen-induced mammary cancer QTL 12			mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	94034903	139034903	Rat
1598847	Cm62	Cardiac mass QTL 62	3.4		heart mass (VT:0007028)	heart weight to body weight ratio (CMO:0000074)	5	114131300	159131300	Rat
1358909	Kidm25	Kidney mass QTL 25	1.87		kidney mass (VT:0002707)	both kidneys wet weight to body weight ratio (CMO:0000340)	5	95062526	133270832	Rat
70189	Mcs5	Mammary carcinoma susceptibility QTL 5	10.51		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	60601597	137492949	Rat
7207488	Bss110	Bone structure and strength QTL 1	8.4		femur strength trait (VT:0010010)	femur stiffness (CMO:0001674)	5	112142946	157142946	Rat
8694441	Bw169	Body weight QTL 169	17.61	0.001	retroperitoneal fat pad mass (VT:0010430)	retroperitoneal fat pad weight to body weight ratio (CMO:0000635)	5	116702075	161702075	Rat
7207491	Bss112	Bone structure and strength QTL 112	7		femur morphology trait (VT:0000559)	femur midshaft cortical cross-sectional area (CMO:0001663)	5	112142946	157142946	Rat
8694389	Bw160	Body weight QTL 160	6.17	0.001	body lean mass (VT:0010483)	lean tissue morphological measurement (CMO:0002184)	5	116702075	161702075	Rat
2290448	Scl54	Serum cholesterol level QTL 54	2.93		blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	36460764	136631402	Rat
1354598	Srn6	Serum renin concentration QTL 6	3.8		blood renin amount (VT:0003349)	plasma renin activity level (CMO:0000116)	5	74335621	156302135	Rat
1600362	Mcs19	Mammary carcinoma susceptibility QTL 19	2.5		mammary gland integrity trait (VT:0010552)	mammary tumor number (CMO:0000343)	5	82032155	127032155	Rat
8694198	Abfw3	Abdominal fat weight QTL 3	16.13	0.001	visceral adipose mass (VT:0010063)	abdominal fat pad weight to body weight ratio (CMO:0000095)	5	116702075	161702075	Rat
1298086	Bp156	Blood pressure QTL 156			arterial blood pressure trait (VT:2000000)	systolic blood pressure (CMO:0000004)	5	89369373	134369373	Rat
2306971	Anxrr21	Anxiety related response QTL 21	9.47		fear/anxiety-related behavior trait (VT:1000241)	number of entries into a discrete space in an experimental apparatus (CMO:0000960)	5	70969494	136328156	Rat
1298089	Scl14	Serum cholesterol level QTL 14	5.8	0.0004	blood cholesterol amount (VT:0000180)	plasma total cholesterol level (CMO:0000585)	5	114131300	159131300	Rat
1358895	Bp254	Blood pressure QTL 254	3.6	0.0003	arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	97492524	133270832	Rat
6903316	Bw113	Body weight QTL 113	2	0.0103	body mass (VT:0001259)	body weight (CMO:0000012)	5	92881678	137881678	Rat
1358889	Bp261	Blood pressure QTL 261	2.86		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	5	95062526	133270832	Rat
1358187	Emca1	Estrogen-induced mammary cancer QTL 1	4.4		mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	5	104262817	153890625	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
8	4	3	35	29	30	7	19	7	6	64	30	24	15	31	23	1	1

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001431220	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431221	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431222	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431223	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431224	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431225	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431226	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001431227	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197167	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197168	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197169	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197170	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197171	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NR_197172	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_001063526	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006225418	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006238487	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008763920	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008776010	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111123	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039111124	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288586	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288587	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288588	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288589	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063288590	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_575875	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC079057	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	BC105617	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473998	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000005	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000030112 ⟹ ENSRNOP00000035060

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	123,229,916 - 123,293,251 (-)	Ensembl
mRatBN7.2 Ensembl	5	118,000,866 - 118,064,208 (-)	Ensembl
Rnor_6.0 Ensembl	5	122,766,879 - 122,828,398 (-)	Ensembl

Ensembl Acc Id:

ENSRNOT00000119912 ⟹ ENSRNOP00000087159

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	5	123,235,061 - 123,293,123 (-)	Ensembl
mRatBN7.2 Ensembl	5	118,006,011 - 118,064,208 (-)	Ensembl

RefSeq Acc Id:

XM_039111123 ⟹ XP_038967051

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	123,235,258 - 123,293,548 (-)	NCBI
mRatBN7.2	5	118,006,264 - 118,064,457 (-)	NCBI

RefSeq Acc Id:

XM_039111124 ⟹ XP_038967052

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	123,235,258 - 123,293,548 (-)	NCBI
mRatBN7.2	5	118,006,329 - 118,064,458 (-)	NCBI

RefSeq Acc Id:

XM_063288586 ⟹ XP_063144656

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	123,229,915 - 123,293,570 (-)	NCBI

RefSeq Acc Id:

XM_063288587 ⟹ XP_063144657

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	123,231,201 - 123,293,548 (-)	NCBI

RefSeq Acc Id:

XM_063288588 ⟹ XP_063144658

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	123,229,915 - 123,272,926 (-)	NCBI

RefSeq Acc Id:

XM_063288589 ⟹ XP_063144659

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	123,229,915 - 123,250,746 (-)	NCBI

RefSeq Acc Id:

XM_063288590 ⟹ XP_063144660

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	123,229,915 - 123,258,055 (-)	NCBI

RefSeq Acc Id:

XM_575875 ⟹ XP_575875

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	5	123,229,915 - 123,293,548 (-)	NCBI
mRatBN7.2	5	118,000,865 - 118,064,461 (-)	NCBI
Rnor_6.0	5	122,766,889 - 122,828,355 (-)	NCBI
Rnor_5.0	5	126,632,422 - 126,696,246 (-)	NCBI
RGSC_v3.4	5	124,174,688 - 124,240,576 (-)	RGD

Sequence:

show sequence

GGAACTTTGGACAGACCTCTGCAGATTTCAGAAGTGAGTACATCTTTCCCTCTCCCAGTTGAAG
GGAACATAGTAAAAACTCCTGACCACAATACTACCATTGGCTGCTGAAACTCCAGTACGGAGAC
AGGAGGATGCTGAACATGGTGTTCTCCCTCAGCACTGACAGGGTACCCGAGGCCTTCCTGTGGG
CCTTATAATCCAGCGCTTTCCTTTCAGTTCCCAAAACTAAAATGATAAACAAGAATTTGATCTA
AAAGTCAGCATAAGTCAGTGAAGAAAGTGGGGATGGAAAAGAAGCATGACCATGAGGAGCCACC
GTGCATTAGACTCAGAGTTGCTCGGTAAGGGTAAATACTAAGTGGCTGTGAAATCTGATCCATT
CCTAACGAAAGAGAAAGTTAGTGTAAGTAGAGCTGAGGGAGACAGACAGACCGACAGACAAATG
CAGGCTTTTGATCGCATCTTGGCAAGAACAGCAGAAGATGAAATGGTCTGTGGCCGGAGAAGAC
ACTTTGTGCTGCAATTATAAAAAAATAAAAATAAGGGAGATACACACACCTGGCCTCTAACTGG
AATTTACTGACAAAGGATGACAGAAAAAATTCTGGAAAAGTTCGATGCCCTGGAGGAGAAAGCA
AGGATACTTGCAGCCATCAGGGAAAAGAATAGCAACTGGCGTCTTAAAAAAAAGCCTTTGATTA
CACCCATGCTGTTTGACCATCATGTGAAGTTTGGAGACACAATTACCCCAGCTGCATTTAAGAC
AGTAGCAAATATCACAGAAGATGAATCAAATGATCTTAAGAAGTCAAAAAAGTCTGTGTCTTTC
AAATATAAGCCTAAACCCAGAAGTGATTTTGAAGAGTCAGATTTAAGACCACCTACTCTTGCAA
CAGTTATAAACGATGAAGAAAGTAAATTAATGGAACACAAAGAAGAAAATCTAAAACCAAGTTC
TACATCTCTTCGTTTTCTTAAAGATAAAGAGACAGGAAACACAAAGCCCTTGCCTCTGCCACTG
CCTCGGTCTAGACACCCGAGTAAAAAATCAGCAGAGTCTTCAATCCTGTCTCCCACACTCAACA
AAGTATCCAATGCTGACCAGAATGAAAGCAGAGCTAAGAAGTCCACGCATTCCACAGACCACTC
AGCAGATTCTAGTAGAAATGGGAGAAAACACCGTCCAGAGGTGAATAATTTGATTACAAAAGAA
AGCGAATTAACCAGAAATGACCAAGCAAGAATGACTCATCCAGTCAAACAGAACATCTTGTTTC
CCCTGGACTGTGAGGATCTACTGAAAGATCCAAAAATGAAGACAATTGACCTTGGTCCAACAGA
GACAGTGCATACTTCTATGGAACAAAACCACGCAAGTCCAATAATTTTCTATGACACTAAATAT
GTACAAATGCTGTTCCAGACAAAATGGTTTACCCCCTATGCTCTGAATTATACAAAAAAGAATA
TTGTTTTAGAAAAAAATTGTGAAATAGTCAAAACTTTATTTAATGATGAACCAAGTACTATTTC
TAAACCTGAAAGTACTAAGTCTGTAGCCCAGCAGAAACGGTTGCGAGTCCTCTCTGGTGAACTG
GCCCAAAAGAGTATAAGCGAGAAACGAAAGAAGAAACATGACAGTCTGGTTTCAAAGAAAATAT
CTCCGAACCCTCTTTATAATTTATCCCAAACTTTTTCCAGCTTAAGCAAAAGATTTGTTGGTTA
CTTTGATAAAGATGTTATTCAAGAAAAGAGTGATAAGGCAGATAAATATGAACTGTTTTCCAAA
ACAAAACCACCACCCACACGCAAATTTACTACCTTACCTATCAAGTATGACTCCAAGCCTCTGA
GAAATATACTTGAAATACGTAAACTAAACAACATAACTCCACTGGATAACCTTCTAGGCTGAAT
ACATAAGTAATCATTTGTGCAGCAATTTTTAAAAACAAGAAGTACCAGGTTCCAAAATCATAGA
AGAAATTATTATCTGATTACTAATGTTCTGATGGATGAAGTACTCAATCGGAAGTGGCCTGTTC
AAGATCAACTAACGATGTTAGCTAACATGGGGATATAGTTAGGAAACTATGAGCAAGAGCGATT
CATTCGCGATTTATCTTTTTGGTTGTGGAGCCTACCTTTTCCAGGATGAGCCATCTCTCTAGCC
CATTCATGGCTCATCTCAATTATACTTATCAGAAATCCCTGTTGGCTAGAGCACATTCTTATTC
AGTACCAACAATGGCATAGATTGATGAGAAAGTTGCTGCCAGAAGCCATAAAACATAAACAACC
TTGCCCTATAATTGACTATCAATATAGAATACCATGAATTTACTGAATGTGGAGTTAATGGTAG
ATTAGAATTTTAGATACTCATGAGAAAATAGGGTCACGTGACAAATGTAATGTGATTAAAAAGG
CTTCATAAAACCTGC

hide sequence

Protein Sequences


Protein RefSeqs	NP_001418149	(Get FASTA)	NCBI Sequence Viewer
	NP_001418150	(Get FASTA)	NCBI Sequence Viewer
	NP_001418151	(Get FASTA)	NCBI Sequence Viewer
	NP_001418152	(Get FASTA)	NCBI Sequence Viewer
	NP_001418153	(Get FASTA)	NCBI Sequence Viewer
	NP_001418154	(Get FASTA)	NCBI Sequence Viewer
	NP_001418155	(Get FASTA)	NCBI Sequence Viewer
	NP_001418156	(Get FASTA)	NCBI Sequence Viewer
	XP_038967051	(Get FASTA)	NCBI Sequence Viewer
	XP_038967052	(Get FASTA)	NCBI Sequence Viewer
	XP_063144656	(Get FASTA)	NCBI Sequence Viewer
	XP_063144657	(Get FASTA)	NCBI Sequence Viewer
	XP_063144658	(Get FASTA)	NCBI Sequence Viewer
	XP_063144659	(Get FASTA)	NCBI Sequence Viewer
	XP_063144660	(Get FASTA)	NCBI Sequence Viewer
	XP_575875	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAI05618	(Get FASTA)	NCBI Sequence Viewer
	EDL97868	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000035060
	ENSRNOP00000035060.4
	ENSRNOP00000087159
	ENSRNOP00000087159.1

RefSeq Acc Id:

XP_575875 ⟸ XM_575875

- Peptide Label:

isoform X1

- Sequence:

show sequence

MTEKILEKFDALEEKARILAAIREKNSNWRLKKKPLITPMLFDHHVKFGDTITPAAFKTVANIT
EDESNDLKKSKKSVSFKYKPKPRSDFEESDLRPPTLATVINDEESKLMEHKEENLKPSSTSLRF
LKDKETGNTKPLPLPLPRSRHPSKKSAESSILSPTLNKVSNADQNESRAKKSTHSTDHSADSSR
NGRKHRPEVNNLITKESELTRNDQARMTHPVKQNILFPLDCEDLLKDPKMKTIDLGPTETVHTS
MEQNHASPIIFYDTKYVQMLFQTKWFTPYALNYTKKNIVLEKNCEIVKTLFNDEPSTISKPEST
KSVAQQKRLRVLSGELAQKSISEKRKKKHDSLVSKKISPNPLYNLSQTFSSLSKRFVGYFDKDV
IQEKSDKADKYELFSKTKPPPTRKFTTLPIKYDSKPLRNILEIRKLNNITPLDNLLG

hide sequence

Ensembl Acc Id:

ENSRNOP00000035060 ⟸ ENSRNOT00000030112

RefSeq Acc Id:	XP_038967051 ⟸ XM_039111123
- Peptide Label:	isoform X4

RefSeq Acc Id:	XP_038967052 ⟸ XM_039111124
- Peptide Label:	isoform X5

Ensembl Acc Id:

ENSRNOP00000087159 ⟸ ENSRNOT00000119912

RefSeq Acc Id:	XP_063144656 ⟸ XM_063288586
- Peptide Label:	isoform X1

RefSeq Acc Id:	XP_063144658 ⟸ XM_063288588
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063144660 ⟸ XM_063288590
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063144659 ⟸ XM_063288589
- Peptide Label:	isoform X3

RefSeq Acc Id:	XP_063144657 ⟸ XM_063288587
- Peptide Label:	isoform X2

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-E9PT12-F1-model_v2	AlphaFold	E9PT12	1-441	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13693872

Promoter ID:

EPDNEW_R4392

Type:

multiple initiation site

Name:

RGD1562532_1

Description:

hypothetical gene supported by BC079057

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	5	122,828,343 - 122,828,403	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562532	AgrOrtholog
BioCyc Gene	G2FUF-40506	BioCyc
Ensembl Genes	ENSRNOG00000022890	Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000030112	ENTREZGENE
	ENSRNOT00000030112.7	UniProtKB/TrEMBL
	ENSRNOT00000119912	ENTREZGENE
	ENSRNOT00000119912.2	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7453214	IMAGE-MGC_LOAD
InterPro	DUF4545	UniProtKB/TrEMBL
MGC_CLONE	MGC:125212	IMAGE-MGC_LOAD
NCBI Gene	500513	ENTREZGENE
PANTHER	HYPOTHETICAL GENE SUPPORTED BY BC079057	UniProtKB/TrEMBL
	PTHR36873	UniProtKB/TrEMBL
Pfam	DUF4545	UniProtKB/TrEMBL
PhenoGen	C5h1orf141	PhenoGen
RatGTEx	ENSRNOG00000022890	RatGTEx
UniProt	A0A8I6GFR2	ENTREZGENE, UniProtKB/TrEMBL
	A6JRS6_RAT	UniProtKB/TrEMBL
	E9PT12	ENTREZGENE, UniProtKB/TrEMBL
	Q0VGK6	ENTREZGENE, UniProtKB/TrEMBL

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2022-06-30	C5h1orf141	similar to human chromosome 1 open reading frame 141	RGD1562532	hypothetical gene supported by BC079057	Name and Symbol changed	629549	APPROVED
2008-04-30	RGD1562532	hypothetical gene supported by BC079057	RGD1562532_predicted	hypothetical gene supported by BC079057 (predicted)	'predicted' is removed	2292626	APPROVED
2006-03-07	RGD1562532_predicted	hypothetical gene supported by BC079057 (predicted)	LOC500513	hypothetical gene supported by BC079057	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500513	hypothetical gene supported by BC079057			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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