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Gene: Tmem196 (transmembrane protein 196) Rattus norvegicus

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Symbol:

Tmem196

Name:

transmembrane protein 196

RGD ID:

1562527

Description:

Predicted to be involved in several processes, including negative regulation of canonical Wnt signaling pathway; negative regulation of cell growth; and negative regulation of cell migration. Predicted to be located in cytoplasm. Orthologous to human TMEM196 (transmembrane protein 196); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

LOC500750; MGC109451; RGD1562527

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM196 (transmembrane protein 196)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tmem196 (transmembrane protein 196)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem196 (transmembrane protein 196)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM196 (transmembrane protein 196)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM196 (transmembrane protein 196)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem196 (transmembrane protein 196)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM196 (transmembrane protein 196)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM196 (transmembrane protein 196)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem196 (transmembrane protein 196)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Rattus rattus (black rat):	Tmem196 (transmembrane protein 196)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	NKX1-2 (NK1 homeobox 2)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TMEM196 (transmembrane protein 196)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tmem196 (transmembrane protein 196)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Danio rerio (zebrafish):	tmem196b (transmembrane protein 196b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER)
Danio rerio (zebrafish):	tmem196b (transmembrane protein 196b)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|OrthoFinder\|PANTHER\|PhylomeDB)
Xenopus tropicalis (tropical clawed frog):	tmem196	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

GRCr8 - GRCr8 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	147,039,315 - 147,102,464 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	147,039,533 - 147,102,462 (+)	Ensembl				GRCr8
mRatBN7.2	6	140,895,556 - 140,959,501 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	140,896,576 - 140,957,435 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	144,339,111 - 144,405,642 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	140,956,580 - 141,023,106 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	141,523,748 - 141,590,267 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	147,874,536 - 147,940,231 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	147,876,237 - 147,940,226 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	156,783,475 - 156,849,159 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	147,554,825 - 147,617,422 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	138,527,200 - 138,588,046 (+)	NCBI		Celera
Cytogenetic Map	6	q33	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Annotation Click to see Annotation Detail View

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP)

2,3,7,8-Tetrachlorodibenzofuran (EXP)

6-propyl-2-thiouracil (EXP)

acrylamide (ISO)

aflatoxin B1 (ISO)

antirheumatic drug (ISO)

arsenite(3-) (ISO)

benzo[a]pyrene (ISO)

bisphenol A (EXP,ISO)

chlorpyrifos (ISO)

dioxygen (EXP)

lead(0) (ISO)

okadaic acid (ISO)

testosterone (EXP)

valproic acid (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Biological Process

negative regulation of canonical Wnt signaling pathway (ISO,ISS)

negative regulation of cell growth (ISO,ISS)

negative regulation of cell migration (ISO,ISS)

negative regulation of cell population proliferation (ISO,ISS)

positive regulation of apoptotic process (ISO,ISS)

Cellular Component

cytoplasm (IEA,ISO,ISS)

membrane (IEA)

Molecular Function

protein binding (ISO)

References

References - curated

#	Reference Title	Reference Citation
1.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions

Additional References at PubMed

PMID:12477932	PMID:26056045

Genomics

Comparative Map Data

Tmem196
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	6	147,039,315 - 147,102,464 (+)	NCBI	GRCr8	GRCr8		GRCr8
GRCr8 Ensembl	6	147,039,533 - 147,102,462 (+)	Ensembl				GRCr8
mRatBN7.2	6	140,895,556 - 140,959,501 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	6	140,896,576 - 140,957,435 (+)	Ensembl				mRatBN7.2
UTH_Rnor_SHR_Utx	6	144,339,111 - 144,405,642 (+)	NCBI	UTH_Rnor_SHR_Utx	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	6	140,956,580 - 141,023,106 (+)	NCBI	UTH_Rnor_SHRSP_BbbUtx_1.0	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	6	141,523,748 - 141,590,267 (+)	NCBI	UTH_Rnor_WKY_Bbb_1.0	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	6	147,874,536 - 147,940,231 (+)	NCBI	Rnor_6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	6	147,876,237 - 147,940,226 (+)	Ensembl			rn6	Rnor6.0
Rnor_5.0	6	156,783,475 - 156,849,159 (+)	NCBI	Rnor_5.0	Rnor_5.0	rn5
RGSC_v3.4	6	147,554,825 - 147,617,422 (+)	NCBI	RGSC_v3.4	RGSC_v3.4	rn4
Celera	6	138,527,200 - 138,588,046 (+)	NCBI		Celera
Cytogenetic Map	6	q33	NCBI

TMEM196
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	7	19,719,315 - 19,773,617 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	7	19,719,315 - 19,773,617 (-)	Ensembl			hg38	GRCh38
GRCh37	7	19,758,938 - 19,813,240 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	7	19,725,463 - 19,779,541 (-)	NCBI	Build 36	Build 36	hg18	NCBI36
Celera	7	19,743,241 - 19,796,711 (-)	NCBI		Celera
Cytogenetic Map	7	p21.1	NCBI
HuRef	7	19,648,094 - 19,701,563 (-)	NCBI		HuRef
CHM1_1	7	19,759,739 - 19,813,222 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	7	19,853,775 - 19,908,049 (-)	NCBI		T2T-CHM13v2.0
CRA_TCAGchr7v2	7	19,810,345 - 19,863,812 (-)	NCBI

Tmem196
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	12	119,909,422 - 119,984,981 (+)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	12	119,909,557 - 119,984,981 (+)	Ensembl		GRCm39 Ensembl		GRCm39
GRCm38	12	119,946,127 - 120,021,242 (+)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	12	119,945,822 - 120,021,246 (+)	Ensembl			mm10	GRCm38
MGSCv37	12	121,184,435 - 121,257,179 (+)	NCBI	MGSCv37	MGSCv37	mm9	NCBIm37
MGSCv36	12	114,169,373 - 114,240,928 (+)	NCBI		MGSCv36	mm8
MGSCv36	12	120,389,878 - 120,462,915 (+)	NCBI		MGSCv36	mm8
Cytogenetic Map	12	F2	NCBI
cM Map	12	63.86	NCBI

Tmem196
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955410	22,455,130 - 22,509,507 (-)	Ensembl
ChiLan1.0	NW_004955410	22,455,130 - 22,509,507 (-)	NCBI	ChiLan1.0	ChiLan1.0

TMEM196
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	6	24,572,356 - 24,626,552 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	7	72,897,081 - 72,951,261 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	7	20,393,673 - 20,447,857 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	7	19,713,634 - 19,767,598 (-)	NCBI	PanPan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	7	19,712,988 - 19,767,598 (-)	Ensembl			panPan2	panpan1.1

TMEM196
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	14	33,881,098 - 33,930,362 (-)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	14	33,881,166 - 33,975,284 (-)	Ensembl			canFam3	CanFam3.1
Dog10K_Boxer_Tasha	14	33,415,239 - 33,466,878 (-)	NCBI	Dog10K_Boxer_Tasha	Dog10K_Boxer_Tasha
ROS_Cfam_1.0	14	33,800,027 - 33,851,710 (-)	NCBI	ROS_Cfam_1.0	ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	14	33,800,038 - 33,851,598 (-)	Ensembl				ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	14	33,909,793 - 33,972,666 (-)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	14	33,617,744 - 33,669,439 (-)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	14	33,928,443 - 33,980,096 (-)	NCBI	UU_Cfam_GSD_1.0	UU_Cfam_GSD_1.0

Tmem196
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405118	78,091,086 - 78,152,135 (-)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936546	5,766,808 - 5,826,012 (-)	Ensembl		SpeTri2.0 Ensembl
SpeTri2.0	NW_004936546	5,766,175 - 5,827,925 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM196
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	9	88,798,831 - 88,858,006 (-)	Ensembl			susScr11	Sscrofa11.1
Sscrofa11.1	9	88,798,095 - 88,858,270 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	9	98,050,988 - 98,062,599 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM196
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	21	38,424,266 - 38,478,725 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
Vero_WHO_p1.0	NW_023666042	66,086,677 - 66,140,209 (-)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem196
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624739	10,815,083 - 10,878,588 (+)	Ensembl		HetGla_female_1.0 Ensembl	hetGla2	HetGla_female_1.0 Ensembl
HetGla 1.0	NW_004624739	10,814,724 - 10,878,468 (+)	NCBI	HetGla 1.0	HetGla 1.0	hetGla2

Tmem196
(Rattus rattus - black rat)

Black Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Black Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Rrattus_CSIRO_v1	7	116,266,103 - 116,335,175 (-)	NCBI		Rrattus_CSIRO_v1

miRNA Target Status (No longer updated)

Predicted Target Of

	Summary Value
Count of predictions:	365
Count of miRNA genes:	214
Interacting mature miRNAs:	245
Transcripts:	ENSRNOT00000056649
Prediction methods:	Microtar, Miranda
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (GRCr8)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1331797	Bp213	Blood pressure QTL 213	3.291		arterial blood pressure trait (VT:2000000)	mean arterial blood pressure (CMO:0000009)	6	114241077	147156653	Rat
4145118	Mcs26	Mammary carcinoma susceptibility QTL 26		0.0001	mammary gland integrity trait (VT:0010552)	post-insult time to mammary tumor formation (CMO:0000345)	6	112483610	147156653	Rat
737976	Pia24	Pristane induced arthritis QTL 24			joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	6	118366855	147156653	Rat
1298087	Iddm18	Insulin dependent diabetes mellitus QTL 18		0.0001	urine glucose amount (VT:0001758)	percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)	6	122236101	147156653	Rat
71111	Iddm8	Insulin dependent diabetes mellitus QTL 8	1.9	0.002	blood glucose amount (VT:0000188)	plasma glucose level (CMO:0000042)	6	110921244	147156653	Rat
1358355	Srcrt4	Stress Responsive Cort QTL 4	6.39		blood corticosterone amount (VT:0005345)	plasma corticosterone level (CMO:0001173)	6	106095977	147156653	Rat
2293085	Iddm29	Insulin dependent diabetes mellitus QTL 29	7.66		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	6	121444670	147156653	Rat

Expression

RNA-SEQ Expression

Click on a value in the shaded box below the category label to view a detailed expression data table for that system.

Download All Expressed Objects for this Gene

alimentary part of gastrointestinal system	appendage	circulatory system	ectoderm	endocrine system	endoderm	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	mesenchyme	mesoderm	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	sensory system	visual system
10	12	64	145	55	54	23	24	23	6	224	121	11	124	62	87	31	17	17

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001044269	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001399754	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001414975	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_006240702	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594310	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_017594311	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC089997	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	FQ211598	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000006	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

Ensembl Acc Id:

ENSRNOT00000056649 ⟹ ENSRNOP00000053487

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	147,039,533 - 147,102,462 (+)	Ensembl
mRatBN7.2 Ensembl	6	140,896,576 - 140,957,435 (+)	Ensembl
Rnor_6.0 Ensembl	6	147,876,237 - 147,938,165 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000080090 ⟹ ENSRNOP00000071122

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0 Ensembl	6	147,876,557 - 147,940,226 (+)	Ensembl

Ensembl Acc Id:

ENSRNOT00000161658 ⟹ ENSRNOP00000107128

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8 Ensembl	6	147,039,545 - 147,102,462 (+)	Ensembl

RefSeq Acc Id:

NM_001044269 ⟹ NP_001037734

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	147,039,841 - 147,102,464 (+)	NCBI
mRatBN7.2	6	140,896,876 - 140,959,501 (+)	NCBI
Rnor_6.0	6	147,876,237 - 147,938,168 (+)	NCBI
Rnor_5.0	6	156,783,475 - 156,849,159 (+)	NCBI
RGSC_v3.4	6	147,554,825 - 147,617,422 (+)	RGD
Celera	6	138,527,200 - 138,588,046 (+)	RGD

Sequence:

show sequence

AGCACTTTGCGCAGGCAGGAAAACAAAGGAGGGAAGGCGAGAGGACGGGCGGAGAGGGGTTGCG
AGCTGCTCCCCTTTATCGCTAGGAAACCAAGCTCGGTTCCTCCGCCAGGAAGGAGAAGGGAGCC
AGAGAGGTGCGGAAGGCTCCTGGAAGCGCAGAGCAGAGACGCGGCAGAACTCTGGACTGCGCCT
CCGACACCGACAAGGCTCAGATCCAGGGTTTGCTCTCCAGAGCCTGGCTCCTCCGTAAAAGCTT
CTGGACTCCCACCCATCGCCCGCGGTCCCCGGGTGAACGCGCCACGGGCTGGATCAGCTCTGTC
CTCTCTGGCCCCGCCACGGAAATGGTTCTCTGGTTCTGGAAATCCAGACCCTTTGGATAATGTT
TTGCTGGTGAAGAAAGAAAAGTTTGAGGAGCTGGACTGTGGTAGGGGGCGGAAAGGGCTGAAGA
GGACTTTGAAAGAAAGAAGGTAGATGATCAGCTTCCATCTCTGAGCTGGAAGGAATGATGACCC
AAGGAGAATGTGCACCAGCGGCCAGATCATTGGGAGCCTTTTGGTGCTCTCTGTGCTGGAGATA
GGGCTGGGGGTGTCCAGCGTGGCCGTGGGGGCGGTCAGCTTCAGCCTGGCTCTCCGAGAGCACA
CGCCGCAGCTCGGAGACTCGTCCCCGTTTCTTCTTTGCGGCATATGTGGAATACTGTGCGCCAA
GAAAAAGTCAGGACTTGTCATGATCCTCTTTTCAGCCTGCTGCATCTGTGGACTCATCGGAGGC
ATCCTGAATTTTCAGTTTCTTCGGGCAGTCACAAAAAAGACCTCATCCCTGTACCCACTGCATC
TCGCCTCCATGTCTTTGGCATGTATCGGCATTGGCGGCTGCACTGTCTCTTCTTGGCTCACTTG
TCGTCTAGCCAGCTATGAGCAAAGGAGGATGTTCTCAGAAAGGGAACATTCCCTGCATCACTCT
CATGAAATGGCTGAGAAAGAAGTGACAGACAACATGAGCAATGGAGCACCACAACTGATATTTA
ATGGAAGAGTACAATCAATGTTTTAAAGAACTGACCATTTTTCAGGTTGACCGTGAGGCAGGAG
AGGCTGAAGACCTGGGAGCAGCAGTTGAAATGGTTCCTGGATTTGCTGTTATTTCTCCTGGGCG
TCCACTCAATTTGGTCTCACTCACCCTTTATCCCTTTCTAGAGGGTATAAACTTTCCAGAAATG
TAGCTTAGTCATCTCAGCAGAATGACCAATTATTCTGAAGAAGATTATTCCAAAAAAAAGTGGC
AAAGTGATTAATACTGTACACAAACATCATTTGACTAGCATGAGCTTTAGAATTGTAATTGCAT
ATTTTATGAATAATTCAAAAGTAAACACATCAAGAACTAACAATAACTTATTGATGTCTTTGTT
TTGAAAGACAAATGACTTCAAGTATGCTAAAATCAAGACCTCAGCAATGCCTTGTTGCAACAAC
ATTGTAATTAATTTCAATTTGTGAATGAACTGTATTTCATAATTTATTTGTAAATTATAAAAAA
ACTAAAGCTTAAAAGATGATTTTTTAGTGAGAGAAAGAATATTAATCTGTATGATATTTTTGCA
CTTTTGAACAAGTTAATATTATGTAAGAAAAATAAATGTTTTCATTATGCTGTGCAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001399754 ⟹ NP_001386683

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	147,039,841 - 147,102,464 (+)	NCBI
mRatBN7.2	6	140,896,876 - 140,959,501 (+)	NCBI

RefSeq Acc Id:

NM_001414975 ⟹ NP_001401904

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	147,039,841 - 147,102,464 (+)	NCBI
mRatBN7.2	6	140,896,876 - 140,959,501 (+)	NCBI

RefSeq Acc Id:

XM_006240702 ⟹ XP_006240764

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	147,039,315 - 147,102,464 (+)	NCBI
mRatBN7.2	6	140,896,340 - 140,959,501 (+)	NCBI
Rnor_6.0	6	147,874,536 - 147,938,810 (+)	NCBI
Rnor_5.0	6	156,783,475 - 156,849,159 (+)	NCBI

Sequence:

show sequence

TAAAAAATAGAAAAGCAAAACAAAGTGGCTAAATTCAAACCACAAGTGAAGCAGCATAGATATC
TCATTATTTCTGTTTATGTTTGATTTATAAAATATGTAAATATCATAAATGTTGCTTTATTGAA
TCTACAAACTGAGAAATTCTGGAAACTGGTTATCTGAGGGAAAAGGTCTTGAGAAGTAGAAAGG
AACATCACTATCAGTCAACATTAGTATGTACATTGTGCTCTGATTATCACAATAGCCGAAAATT
CCTTAGCATTTAATAACTTGTAATCCTTTGATTTTTGTTCTCAAATTTTAAAACTCATAAAATA
AGCATATTAGAAAGAAAGAAATGAGAGTGTAGGATTTAAGCTATGAAGCATGTTCTGATTAAAA
TATTTAAAGGTGAAACTGACACTCCTGGGACAGAATTAGGGCTTCTGCTTCCTCAACATTGGAT
CTTGAAAAACAAAACAAAACAAAAGAAACAAAAAACAAAAACAAAAAACAATGCCTTGTGTAAT
CCCAAAGGTGCTTACTCTGCACTTCTTTGCATGTGGGCCGAGGCCAAGATGCCCTCATACTGTG
GATCCCCGTTGTCTATATTTCCCTTCAACCCATCTCTAACTGAAGAATCGGTTCTTGAGAAAGA
TGATTAATGGATCCATACCTCAGAACTCTTCCCTCTCTATCCTGAATATTTTCAGTAGAACACC
TGAGATGTTTCCTGGAGGGAAAATCAGTAAAATATAACCCTGATGCATGCATAGCAGTTCTACT
ATATCTAGACTCCCAAAATTCACCAGAGAGAACAACAAAATTACACAACCCACGCGTGAGCCCC
TGCCATGATGATTCAGATTGAGTTGAAGATGGTAAAAATTAGTTATGTACTAGGTCAGACTTTT
TTCTCCGTGTATAAGTAACGCTTGTTCTGGTGTAATACTCAAGTGCGTGTTATCTCAACTGAAA
TGGGATAAGAACTCAAGGTCTCTGCCACACTGCTTCTGACTATGCCTCTCAGGATGTATGGGTG
TGTGGCTAGCAAGGAAAGTATGACTCCAGCAGACAGCGTCTTCCCCTAGGATAGGAAGATACAA
GGTAGTGATGGCAGAGTGGACCCTCTCTCTTAAAGAGCAGGCTCCAGGCTGGGTTCATTGATAT
AGTCGAGTCCTTCAATTAGGGTTCCCTATAATCTTTGTATAGGGGTCTGGCTTCTCTCTATTTC
AGTGCACTGGGCTTCCCTTTGCTCTCTGCTCCTCAAGCAGAGCAAGTACATGTAGAAGAAAGTT
TTACATAGAATGAGCCCATATTGATATAGGAACCAGGAATAGCCACCCCTCCTGGCCGAGGCAG
AAACCCAAGAGGAATTGAGTAGAGGAGGTGCAGAAGTAAGGAATTTAGGATCCTGGGGTTGGGT
CCAGGGCCGGGGCGACCCGGGGGTCAGCCAAGAGTATTATTGGTCCTAGACCCACAAATACATC
AGGATTCTCCCTCCTCTTTTAGCCTCCTTAACCCCAATGAGGTCATAGCGATGAGAGAGAATCG
GATCAAGGGGGGTGGGGGGAGGACGAAAACGACAGAGGGGGGAGAAAAACCAGACGGAAAGAGG
CCATCAGACAAGGTCGCTTTTTCTGGCGACACAGCAAGTGCTAGGAACGTGGTGCTGAATACAA
TCCACCCGCTCTGCCTGGAGACCTAGGGATTCACAGAAGCACTTTGCGCAGGCAGGAAAACAAA
GGAGGGAAGGCGAGAGGACGGGCGGAGAGGGGTTGCGAGCTGCTCCCCTTTATCGCTAGGAAAC
CAAGCTCGGTTCCTCCGCCAGGAAGGAGAAGGGAGCCAGAGAGGTGCGGAAGGCTCCTGGAAGC
GCAGAGCAGAGACGCGGCAGAACTCTGGACTGCGCCTCCGACACCGACAAGGCTCAGATCCAGG
GTTTGCTCTCCAGAGCCTGGCTCCTCCGTAAAAGCTTCTGGACTCCCACCCATCGCCCGCGGTC
CCCGGGTGAACGCGCCACGGGCTGGATCAGCTCTGTCCTCTCTGGCCCCGCCACGGAAATGGTT
CTCTGGTTCTGGAAATCCAGACCCTTTGGATAATGTTTTGCTGGTGAAGAAAGAAAAGTTTGAG
GAGCTGGACTGTGGTAGGGGGCGGAAAGGGCTGAAGAGGACTTTGAAAGAAAGAAGGTAGATGA
TCAGCTTCCATCTCTGAGCTGGAAGGAATGATGACCCAAGGAGAATGTGCACCAGCGGCCAGAT
CATTGGGAGCCTTTTGGTGCTCTCTGTGCTGGAGATAGGGCTGGGGGTGTCCAGCGTGGCCGTG
GGGGCGGTCAGCTTCAGCCTGGCTCTCCGAGAGCACACGCCGCAGCTCGGAGACTCGTCCCCGG
TATGGAGCGGGGTGTGTTTTCTTCTTTGCGGCATATGTGGAATACTGTGCGCCAAGAAAAAGTC
AGGACTTGTCATGATCCTCTTTTCAGCCTGCTGCATCTGTGGACTCATCGGAGGCATCCTGAAT
TTTCAGTTTCTTCGGGCAGTCACAAAAAAGACCTCATCCCTGTACCCACTGCATCTCGCCTCCA
TGTCTTTGGCATGTATCGGCATTGGCGGCTGCACTGTCTCTTCTTGGCTCACTTGTCGTCTAGC
CAGCTATGAGCAAAGGAGGATGTTCTCAGAAAGGGAACATTCCCTGCATCACTCTCATGAAATG
GCTGAGAAAGAAGTGACAGACAACATGAGCAATGGAGCACCACAACTGATATTTAATGGAAGAG
TACAATCAATGTTTTAAAGAACTGACCATTTTTCAGGTTGACCGTGAGGCAGGAGAGGCTGAAG
ACCTGGGAGCAGCAGTTGAAATGGTTCCTGGATTTGCTGTTATTTCTCCTGGGCGTCCACTCAA
TTTGGTCTCACTCACCCTTTATCCCTTTCTAGAGGGTATAAACTTTCCAGAAATGTAGCTTAGT
CATCTCAGCAGAATGACCAATTATTCTGAAGAAGATTATTCCAAAAAAAAGTGGCAAAGTGATT
AATACTGTACACAAACATCATTTGACTAGCATGAGCTTTAGAATTGTAATTGCATATTTTATGA
ATAATTCAAAAGTAAACACATCAAGAACTAACAATAACTTATTGATGTCTTTGTTTTGAAAGAC
AAATGACTTCAAGTATGCTAAAATCAAGACCTCAGCAATGCCTTGTTGCAACAACATTGTAATT
AATTTCAATTTGTGAATGAACTGTATTTCATAATTTATTTGTAAATTATAAAAAAACTAAAGCT
TAAAAGATGATTTTTTAGTGAGAGAAAGAATATTAATCTGTATGATATTTTTGCACTTTTGAAC
AAGTTAATATTATGTAAGAAAAATAAATGTTTTCATTATGCTGTGCAAATTGGTCTTCATGTTC
ATGAATAATTCTGAGAATAAAGCATTGTGTATACGTAGGTGTATATATACTGTAAATACAGAAA
ATACATACAGCATATATTTATAGCTACATGAATGTAACTAGGTAATAGGGAAGAAATTGTGGCA
GTATGAGATTATTCCACTGGCTCTGAGAAGGCCAGCACTCAAAGCTCTCTAAACCCGCAAGGTC
ACATATTTAATTCCTACTCTATCTGACCATTTTCTACTTTTTCTTAAACCAATTGTGTGGTAGA
TAAGCATTGTAGCTGATACATATGGAGCTGAGTGACTTGAATGTTGAAGCATGAATGTAAACTA
CTTAGTTGTTGGTATTTTGCTGTGACTATGATGTTTATGTAAAAGTAATTGTTAAAATTGATTT
ATAAGCATAACTTCAATCATTTTTTTCTCTAAGATTATTCCTAATATGCTTATTTCATAGAACT
TTCAGCCAAATTAAGCTCTGTAATTGAGAAATGGTAACCCAAGGGAAGTTAACACTCCCTTTGT
TATACTTTAGGTGTTTTATCTCCTTTGGTGATTAACATGAAGGTCATGTATTGGAAAATATATA
TTCGAAATGTCTGAAGGAGTTCTCAGTATAATAAATATGAAAGATAAACTG

hide sequence

RefSeq Acc Id:

XM_017594310 ⟹ XP_017449799

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	147,039,315 - 147,102,464 (+)	NCBI
mRatBN7.2	6	140,895,556 - 140,959,501 (+)	NCBI
Rnor_6.0	6	147,874,536 - 147,938,810 (+)	NCBI

Sequence:

show sequence

TAAAAAATAGAAAAGCAAAACAAAGTGGCTAAATTCAAACCACAAGTGAAGCAGCATAGATATC
TCATTATTTCTGTTTATGTTTGATTTATAAAATATGTAAATATCATAAATGTTGCTTTATTGAA
TCTACAAACTGAGAAATTCTGGAAACTGGTTATCTGAGGGAAAAGGTCTTGAGAAGTAGAAAGG
AACATCACTATCAGTCAACATTAGTATGTACATTGTGCTCTGATTATCACAATAGCCGAAAATT
CCTTAGCATTTAATAACTTGTAATCCTTTGATTTTTGTTCTCAAATTTTAAAACTCATAAAATA
AGCATATTAGAAAGAAAGAAATGAGAGTGTAGGATTTAAGCTATGAAGCATGTTCTGATTAAAA
TATTTAAAGGTGAAACTGACACTCCTGGGACAGAATTAGGGCTTCTGCTTCCTCAACATTGGAT
CTTGAAAAACAAAACAAAACAAAAGAAACAAAAAACAAAAACAAAAAACAATGCCTTGTGTAAT
CCCAAAGGTGCTTACTCTGCACTTCTTTGCATGTGGGCCGAGGCCAAGATGCCCTCATACTGTG
GATCCCCGTTGTCTATATTTCCCTTCAACCCATCTCTAACTGAAGAATCGGTTCTTGAGAAAGA
TGATTAATGGATCCATACCTCAGAACTCTTCCCTCTCTATCCTGAATATTTTCAGTAGAACACC
TGAGATGTTTCCTGGAGGGAAAATCAGTAAAATATAACCCTGATGCATGCATAGCAGTTCTACT
ATATCTAGACTCCCAAAATTCACCAGAGAGAACAACAAAATTACACAACCCACGCGTGAGCCCC
TGCCATGATGATTCAGATTGAGTTGAAGATGGTAAAAATTAGTTATGTACTAGGTCAGACTTTT
TTCTCCGTGTATAAGTAACGCTTGTTCTGGTGTAATACTCAAGTGCGTGTTATCTCAACTGAAA
TGGGATAAGAACTCAAGGTCTCTGCCACACTGCTTCTGACTATGCCTCTCAGGATGTATGGGTG
TGTGGCTAGCAAGGAAAGTATGACTCCAGCAGACAGCGTCTTCCCCTAGGATAGGAAGATACAA
GGTAGTGATGGCAGAGTGGACCCTCTCTCTTAAAGAGCAGGCTCCAGGCTGGGTTCATTGATAT
AGTCGAGTCCTTCAATTAGGGTTCCCTATAATCTTTGTATAGGGGTCTGGCTTCTCTCTATTTC
AGTGCACTGGGCTTCCCTTTGCTCTCTGCTCCTCAAGCAGAGCAAGTACATGTAGAAGAAAGTT
TTACATAGAATGAGCCCATATTGATATAGGAACCAGGAATAGCCACCCCTCCTGGCCGAGGCAG
AAACCCAAGAGGAATTGAGTAGAGGAGGTGCAGAAGTAAGGAATTTAGGATCCTGGGGTTGGGT
CCAGGGCCGGGGCGACCCGGGGGTCAGCCAAGAGTATTATTGGTCCTAGACCCACAAATACATC
AGGATTCTCCCTCCTCTTTTAGCCTCCTTAACCCCAATGAGGTCATAGCGATGAGAGAGAATCG
GATCAAGGGGGGTGGGGGGAGGACGAAAACGACAGAGGGGGGAGAAAAACCAGACGGAAAGAGG
CCATCAGACAAGGTCGCTTTTTCTGGCGACACAGCAAGTGCTAGGAACGTGGTGCTGAATACAA
TCCACCCGCTCTGCCTGGAGACCTAGGGATTCACAGAAGCACTTTGCGCAGGCAGGAAAACAAA
GGAGGGAAGGCGAGAGGACGGGCGGAGAGGGGTTGCGAGCTGCTCCCCTTTATCGCTAGGAAAC
CAAGCTCGGTTCCTCCGCCAGGAAGGAGAAGGGAGCCAGAGAGGTGCGGAAGGCTCCTGGAAGC
GCAGAGCAGAGACGCGGCAGAACTCTGGACTGCGCCTCCGACACCGACAAGGCTCAGATCCAGG
GTTTGCTCTCCAGAGCCTGGCTCCTCCGTAAAAGCTTCTGGACTCCCACCCATCGCCCGCGGTC
CCCGGGTGAACGCGCCACGGGCTGGATCAGCTCTGTCCTCTCTGGCCCCGCCACGGAAATGGTT
CTCTGGTTCTGGAAATCCAGACCCTTTGGATAATGTTTTGCTGGTGAAGAAAGAAAAGTTTGAG
GAGCTGGACTGTGGTAGGGGGCGGAAAGGGCTGAAGAGGACTTTGAAAGAAAGAAGGTAGATGA
TCAGCTTCCATCTCTGAGCTGGAAGGAATGATGACCCAAGGAGAATGTGCACCAGCGGCCAGAT
CATTGGGAGCCTTTTGGTGCTCTCTGTGCTGGAGATAGGGCTGGGGGTGTCCAGCGTGGCCGTG
GGGGCGGTCAGCTTCAGCCTGGCTCTCCGAGAGCACACGCCGCAGCTCGGAGACTCGTCCCCGG
TATGGAGCGGGGTGTGTTTTCTTCTTTGCGGCATATGTGGAATACTGTGCGCCAAGAAAAAGTC
AGGACTTGTCATGATCCTCTTTTCAGCCTGCTGCATCTGTGGACTCATCGGAGGCATCCTGAAT
TTTCAGTTTCTTCGGGCAGTCACAAAAAAGACCTCATCCCTGTACCCACTGCATCTCGCCTCCA
TGTCTTTGGCATGTATCGGCATTGGCGGCTGCACTGTCTCTTCTTGGCTCACTTGTCGTCTAGC
CAGCTATGAGCAAAGGAGGATGTTCTCAGAAAGGGAACATTCCCTGCATCACTCTCATGAAATG
GCTGAGAAAGTTGACCGTGAGGCAGGAGAGGCTGAAGACCTGGGAGCAGCAGTTGAAATGGTTC
CTGGATTTGCTGTTATTTCTCCTGGGCGTCCACTCAATTTGGTCTCACTCACCCTTTATCCCTT
TCTAGAGGGTATAAACTTTCCAGAAATGTAGCTTAGTCATCTCAGCAGAATGACCAATTATTCT
GAAGAAGATTATTCCAAAAAAAAGTGGCAAAGTGATTAATACTGTACACAAACATCATTTGACT
AGCATGAGCTTTAGAATTGTAATTGCATATTTTATGAATAATTCAAAAGTAAACACATCAAGAA
CTAACAATAACTTATTGATGTCTTTGTTTTGAAAGACAAATGACTTCAAGTATGCTAAAATCAA
GACCTCAGCAATGCCTTGTTGCAACAACATTGTAATTAATTTCAATTTGTGAATGAACTGTATT
TCATAATTTATTTGTAAATTATAAAAAAACTAAAGCTTAAAAGATGATTTTTTAGTGAGAGAAA
GAATATTAATCTGTATGATATTTTTGCACTTTTGAACAAGTTAATATTATGTAAGAAAAATAAA
TGTTTTCATTATGCTGTGCAAATTGGTCTTCATGTTCATGAATAATTCTGAGAATAAAGCATTG
TGTATACGTAGGTGTATATATACTGTAAATACAGAAAATACATACAGCATATATTTATAGCTAC
ATGAATGTAACTAGGTAATAGGGAAGAAATTGTGGCAGTATGAGATTATTCCACTGGCTCTGAG
AAGGCCAGCACTCAAAGCTCTCTAAACCCGCAAGGTCACATATTTAATTCCTACTCTATCTGAC
CATTTTCTACTTTTTCTTAAACCAATTGTGTGGTAGATAAGCATTGTAGCTGATACATATGGAG
CTGAGTGACTTGAATGTTGAAGCATGAATGTAAACTACTTAGTTGTTGGTATTTTGCTGTGACT
ATGATGTTTATGTAAAAGTAATTGTTAAAATTGATTTATAAGCATAACTTCAATCATTTTTTTC
TCTAAGATTATTCCTAATATGCTTATTTCATAGAACTTTCAGCCAAATTAAGCTCTGTAATTGA
GAAATGGTAACCCAAGGGAAGTTAACACTCCCTTTGTTATACTTTAGGTGTTTTATCTCCTTTG
GTGATTAACATGAAGGTCATGTATTGGAAAATATATATTCGAAATGTCTGAAGGAGTTCTCAGT
ATAATAAATATGAAAGATAAACTG

hide sequence

RefSeq Acc Id:

XM_017594311 ⟹ XP_017449800

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	6	147,039,315 - 147,102,464 (+)	NCBI
mRatBN7.2	6	140,895,559 - 140,959,501 (+)	NCBI
Rnor_6.0	6	147,874,536 - 147,938,810 (+)	NCBI

Sequence:

show sequence

TAAAAAATAGAAAAGCAAAACAAAGTGGCTAAATTCAAACCACAAGTGAAGCAGCATAGATATC
TCATTATTTCTGTTTATGTTTGATTTATAAAATATGTAAATATCATAAATGTTGCTTTATTGAA
TCTACAAACTGAGAAATTCTGGAAACTGGTTATCTGAGGGAAAAGGTCTTGAGAAGTAGAAAGG
AACATCACTATCAGTCAACATTAGTATGTACATTGTGCTCTGATTATCACAATAGCCGAAAATT
CCTTAGCATTTAATAACTTGTAATCCTTTGATTTTTGTTCTCAAATTTTAAAACTCATAAAATA
AGCATATTAGAAAGAAAGAAATGAGAGTGTAGGATTTAAGCTATGAAGCATGTTCTGATTAAAA
TATTTAAAGGTGAAACTGACACTCCTGGGACAGAATTAGGGCTTCTGCTTCCTCAACATTGGAT
CTTGAAAAACAAAACAAAACAAAAGAAACAAAAAACAAAAACAAAAAACAATGCCTTGTGTAAT
CCCAAAGGTGCTTACTCTGCACTTCTTTGCATGTGGGCCGAGGCCAAGATGCCCTCATACTGTG
GATCCCCGTTGTCTATATTTCCCTTCAACCCATCTCTAACTGAAGAATCGGTTCTTGAGAAAGA
TGATTAATGGATCCATACCTCAGAACTCTTCCCTCTCTATCCTGAATATTTTCAGTAGAACACC
TGAGATGTTTCCTGGAGGGAAAATCAGTAAAATATAACCCTGATGCATGCATAGCAGTTCTACT
ATATCTAGACTCCCAAAATTCACCAGAGAGAACAACAAAATTACACAACCCACGCGTGAGCCCC
TGCCATGATGATTCAGATTGAGTTGAAGATGGTAAAAATTAGTTATGTACTAGGTCAGACTTTT
TTCTCCGTGTATAAGTAACGCTTGTTCTGGTGTAATACTCAAGTGCGTGTTATCTCAACTGAAA
TGGGATAAGAACTCAAGGTCTCTGCCACACTGCTTCTGACTATGCCTCTCAGGATGTATGGGTG
TGTGGCTAGCAAGGAAAGTATGACTCCAGCAGACAGCGTCTTCCCCTAGGATAGGAAGATACAA
GGTAGTGATGGCAGAGTGGACCCTCTCTCTTAAAGAGCAGGCTCCAGGCTGGGTTCATTGATAT
AGTCGAGTCCTTCAATTAGGGTTCCCTATAATCTTTGTATAGGGGTCTGGCTTCTCTCTATTTC
AGTGCACTGGGCTTCCCTTTGCTCTCTGCTCCTCAAGCAGAGCAAGTACATGTAGAAGAAAGTT
TTACATAGAATGAGCCCATATTGATATAGGAACCAGGAATAGCCACCCCTCCTGGCCGAGGCAG
AAACCCAAGAGGAATTGAGTAGAGGAGGTGCAGAAGTAAGGAATTTAGGATCCTGGGGTTGGGT
CCAGGGCCGGGGCGACCCGGGGGTCAGCCAAGAGTATTATTGGTCCTAGACCCACAAATACATC
AGGATTCTCCCTCCTCTTTTAGCCTCCTTAACCCCAATGAGGTCATAGCGATGAGAGAGAATCG
GATCAAGGGGGGTGGGGGGAGGACGAAAACGACAGAGGGGGGAGAAAAACCAGACGGAAAGAGG
CCATCAGACAAGGTCGCTTTTTCTGGCGACACAGCAAGTGCTAGGAACGTGGTGCTGAATACAA
TCCACCCGCTCTGCCTGGAGACCTAGGGATTCACAGAAGCACTTTGCGCAGGCAGGAAAACAAA
GGAGGGAAGGCGAGAGGACGGGCGGAGAGGGGTTGCGAGCTGCTCCCCTTTATCGCTAGGAAAC
CAAGCTCGGTTCCTCCGCCAGGAAGGAGAAGGGAGCCAGAGAGGTGCGGAAGGCTCCTGGAAGC
GCAGAGCAGAGACGCGGCAGAACTCTGGACTGCGCCTCCGACACCGACAAGGCTCAGATCCAGG
GTTTGCTCTCCAGAGCCTGGCTCCTCCGTAAAAGCTTCTGGACTCCCACCCATCGCCCGCGGTC
CCCGGGTGAACGCGCCACGGGCTGGATCAGCTCTGTCCTCTCTGGCCCCGCCACGGAAATGGTT
CTCTGGTTCTGGAAATCCAGACCCTTTGGATAATGTTTTGCTGGTGAAGAAAGAAAAGTTTGAG
GAGCTGGACTGTGGTAGGGGGCGGAAAGGGCTGAAGAGGACTTTGAAAGAAAGAAGGTAGATGA
TCAGCTTCCATCTCTGAGCTGGAAGGAATGATGACCCAAGGAGAATGTGCACCAGCGGCCAGAT
CATTGGGAGCCTTTTGGTGCTCTCTGTGCTGGAGATAGGGCTGGGGGTGTCCAGCGTGGCCGTG
GGGGCGGTCAGCTTCAGCCTGGCTCTCCGAGAGCACACGCCGCAGCTCGGAGACTCGTCCCCGT
TTCTTCTTTGCGGCATATGTGGAATACTGTGCGCCAAGAAAAAGTCAGGACTTGTCATGATCCT
CTTTTCAGCCTGCTGCATCTGTGGACTCATCGGAGGCATCCTGAATTTTCAGTTTCTTCGGGCA
GTCACAAAAAAGACCTCATCCCTGTACCCACTGCATCTCGCCTCCATGTCTTTGGCATGTATCG
GCATTGGCGGCTGCACTGTCTCTTCTTGGCTCACTTGTCGTCTAGCCAGCTATGAGCAAAGGAG
GATGTTCTCAGAAAGGGAACATTCCCTGCATCACTCTCATGAAATGGCTGAGAAAGTTGACCGT
GAGGCAGGAGAGGCTGAAGACCTGGGAGCAGCAGTTGAAATGGTTCCTGGATTTGCTGTTATTT
CTCCTGGGCGTCCACTCAATTTGGTCTCACTCACCCTTTATCCCTTTCTAGAGGGTATAAACTT
TCCAGAAATGTAGCTTAGTCATCTCAGCAGAATGACCAATTATTCTGAAGAAGATTATTCCAAA
AAAAAGTGGCAAAGTGATTAATACTGTACACAAACATCATTTGACTAGCATGAGCTTTAGAATT
GTAATTGCATATTTTATGAATAATTCAAAAGTAAACACATCAAGAACTAACAATAACTTATTGA
TGTCTTTGTTTTGAAAGACAAATGACTTCAAGTATGCTAAAATCAAGACCTCAGCAATGCCTTG
TTGCAACAACATTGTAATTAATTTCAATTTGTGAATGAACTGTATTTCATAATTTATTTGTAAA
TTATAAAAAAACTAAAGCTTAAAAGATGATTTTTTAGTGAGAGAAAGAATATTAATCTGTATGA
TATTTTTGCACTTTTGAACAAGTTAATATTATGTAAGAAAAATAAATGTTTTCATTATGCTGTG
CAAATTGGTCTTCATGTTCATGAATAATTCTGAGAATAAAGCATTGTGTATACGTAGGTGTATA
TATACTGTAAATACAGAAAATACATACAGCATATATTTATAGCTACATGAATGTAACTAGGTAA
TAGGGAAGAAATTGTGGCAGTATGAGATTATTCCACTGGCTCTGAGAAGGCCAGCACTCAAAGC
TCTCTAAACCCGCAAGGTCACATATTTAATTCCTACTCTATCTGACCATTTTCTACTTTTTCTT
AAACCAATTGTGTGGTAGATAAGCATTGTAGCTGATACATATGGAGCTGAGTGACTTGAATGTT
GAAGCATGAATGTAAACTACTTAGTTGTTGGTATTTTGCTGTGACTATGATGTTTATGTAAAAG
TAATTGTTAAAATTGATTTATAAGCATAACTTCAATCATTTTTTTCTCTAAGATTATTCCTAAT
ATGCTTATTTCATAGAACTTTCAGCCAAATTAAGCTCTGTAATTGAGAAATGGTAACCCAAGGG
AAGTTAACACTCCCTTTGTTATACTTTAGGTGTTTTATCTCCTTTGGTGATTAACATGAAGGTC
ATGTATTGGAAAATATATATTCGAAATGTCTGAAGGAGTTCTCAGTATAATAAATATGAAAGAT
AAACTG

hide sequence

Protein Sequences


Protein RefSeqs	NP_001037734	(Get FASTA)	NCBI Sequence Viewer
	NP_001386683	(Get FASTA)	NCBI Sequence Viewer
	NP_001401904	(Get FASTA)	NCBI Sequence Viewer
	XP_006240764	(Get FASTA)	NCBI Sequence Viewer
	XP_017449799	(Get FASTA)	NCBI Sequence Viewer
	XP_017449800	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH89997	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000053487
	ENSRNOP00000107128
GenBank Protein	Q5EB63	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001037734 ⟸ NM_001044269
- Peptide Label:	isoform 2
- UniProtKB:	Q5EB63 (UniProtKB/Swiss-Prot)
- Sequence:	show sequence MCTSGQIIGSLLVLSVLEIGLGVSSVAVGAVSFSLALREHTPQLGDSSPFLLCGICGILCAKKK SGLVMILFSACCICGLIGGILNFQFLRAVTKKTSSLYPLHLASMSLACIGIGGCTVSSWLTCRL ASYEQRRMFSEREHSLHHSHEMAEKEVTDNMSNGAPQLIFNGRVQSMF hide sequence

RefSeq Acc Id:	XP_006240764 ⟸ XM_006240702
- Peptide Label:	isoform X3
- UniProtKB:	A0A8L2QSV5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MCTSGQIIGSLLVLSVLEIGLGVSSVAVGAVSFSLALREHTPQLGDSSPVWSGVCFLLCGICGI LCAKKKSGLVMILFSACCICGLIGGILNFQFLRAVTKKTSSLYPLHLASMSLACIGIGGCTVSS WLTCRLASYEQRRMFSEREHSLHHSHEMAEKEVTDNMSNGAPQLIFNGRVQSMF hide sequence

RefSeq Acc Id:

XP_017449799 ⟸ XM_017594310

- Peptide Label:

isoform X1

- Sequence:

show sequence

MCTSGQIIGSLLVLSVLEIGLGVSSVAVGAVSFSLALREHTPQLGDSSPVWSGVCFLLCGICGI
LCAKKKSGLVMILFSACCICGLIGGILNFQFLRAVTKKTSSLYPLHLASMSLACIGIGGCTVSS
WLTCRLASYEQRRMFSEREHSLHHSHEMAEKVDREAGEAEDLGAAVEMVPGFAVISPGRPLNLV
SLTLYPFLEGINFPEM

hide sequence

RefSeq Acc Id:

XP_017449800 ⟸ XM_017594311

- Peptide Label:

isoform X2

- Sequence:

show sequence

MCTSGQIIGSLLVLSVLEIGLGVSSVAVGAVSFSLALREHTPQLGDSSPFLLCGICGILCAKKK
SGLVMILFSACCICGLIGGILNFQFLRAVTKKTSSLYPLHLASMSLACIGIGGCTVSSWLTCRL
ASYEQRRMFSEREHSLHHSHEMAEKVDREAGEAEDLGAAVEMVPGFAVISPGRPLNLVSLTLYP
FLEGINFPEM

hide sequence

Ensembl Acc Id:

ENSRNOP00000071122 ⟸ ENSRNOT00000080090

Ensembl Acc Id:

ENSRNOP00000053487 ⟸ ENSRNOT00000056649

RefSeq Acc Id:	NP_001386683 ⟸ NM_001399754
- Peptide Label:	isoform 1

RefSeq Acc Id:	NP_001401904 ⟸ NM_001414975
- Peptide Label:	isoform 3

Ensembl Acc Id:

ENSRNOP00000107128 ⟸ ENSRNOT00000161658

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5EB63-F1-model_v2	AlphaFold	Q5EB63	1-176	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562527	AgrOrtholog
BioCyc Gene	G2FUF-35445	BioCyc
Ensembl Genes	ENSRNOG00000037435	Ensembl, ENTREZGENE
Ensembl Transcript	ENSRNOT00000056649	ENTREZGENE
	ENSRNOT00000161658	ENTREZGENE
IMAGE_CLONE	IMAGE:7320460	IMAGE-MGC_LOAD
InterPro	TMEM196	UniProtKB/Swiss-Prot
KEGG Report	rno:500750	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:109451	IMAGE-MGC_LOAD
NCBI Gene	500750	ENTREZGENE
PANTHER	PTHR28681	UniProtKB/Swiss-Prot
	TRANSMEMBRANE PROTEIN 196	UniProtKB/Swiss-Prot
PhenoGen	Tmem196	PhenoGen
RatGTEx	ENSRNOG00000037435	RatGTEx
UniProt	A0A8L2QSV5	ENTREZGENE, UniProtKB/TrEMBL
	A0ABK0LR24_RAT	UniProtKB/TrEMBL
	Q5EB63	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-02-29	Tmem196	transmembrane protein 196	RGD1562527_predicted	RGD1562527 (predicted)	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-03-07	RGD1562527_predicted	RGD1562527 (predicted)	LOC500750	LOC500750	Symbol and Name status set to approved	1299863	APPROVED
2006-02-09	LOC500750	LOC500750			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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