Lca5l (lebercilin LCA5 like) - Rat Genome Database

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Gene: Lca5l (lebercilin LCA5 like) Rattus norvegicus
Analyze
Symbol: Lca5l
Name: lebercilin LCA5 like
RGD ID: 1562512
Description: Predicted to be involved in intraciliary transport. Predicted to be active in axoneme. Orthologous to human LCA5L (lebercilin LCA5 like); INTERACTS WITH 2,3,7,8-tetrachlorodibenzodioxine; 6-propyl-2-thiouracil; acrylamide.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LCA5L, lebercilin like; Leber congenital amaurosis 5-like; Lebercilin-like protein; LOC498065; similar to RIKEN cDNA 4921526F01 gene
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81148,930,127 - 48,964,613 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1148,930,127 - 48,964,551 (-)EnsemblGRCr8
mRatBN7.21135,460,646 - 35,495,133 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,461,118 - 35,495,047 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1144,118,341 - 44,152,065 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01136,789,721 - 36,823,447 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01135,935,527 - 35,969,438 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01136,512,823 - 36,546,806 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1136,512,974 - 36,533,073 (-)Ensemblrn6Rnor6.0
Rnor_5.01140,043,452 - 40,077,367 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41136,468,597 - 36,502,649 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1132,977,108 - 33,011,026 (+)NCBICelera
Cytogenetic Map11q11NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
axoneme  (IBA)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data
Lca5l
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr81148,930,127 - 48,964,613 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl1148,930,127 - 48,964,551 (-)EnsemblGRCr8
mRatBN7.21135,460,646 - 35,495,133 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl1135,461,118 - 35,495,047 (-)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx1144,118,341 - 44,152,065 (-)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01136,789,721 - 36,823,447 (-)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.01135,935,527 - 35,969,438 (-)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.01136,512,823 - 36,546,806 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl1136,512,974 - 36,533,073 (-)Ensemblrn6Rnor6.0
Rnor_5.01140,043,452 - 40,077,367 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41136,468,597 - 36,502,649 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera1132,977,108 - 33,011,026 (+)NCBICelera
Cytogenetic Map11q11NCBI
LCA5L
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh382139,405,728 - 39,445,778 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl2139,405,135 - 39,445,805 (-)Ensemblhg38GRCh38
GRCh372140,777,654 - 40,817,704 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 362139,699,640 - 39,737,998 (-)NCBIBuild 36Build 36hg18NCBI36
Build 342139,699,639 - 39,737,998NCBI
Celera2125,975,464 - 26,013,823 (-)NCBICelera
Cytogenetic Map21q22.2NCBI
HuRef2126,246,616 - 26,285,006 (-)NCBIHuRef
CHM1_12140,338,935 - 40,377,266 (-)NCBICHM1_1
T2T-CHM13v2.02137,790,313 - 37,830,401 (-)NCBIT2T-CHM13v2.0
Lca5l
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391695,959,605 - 95,993,450 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1695,959,607 - 95,993,471 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381696,158,406 - 96,192,257 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1696,158,407 - 96,192,271 (-)Ensemblmm10GRCm38
MGSCv371696,380,013 - 96,413,864 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361696,263,316 - 96,297,160 (-)NCBIMGSCv36mm8
Celera1697,233,064 - 97,266,178 (-)NCBICelera
Cytogenetic Map16C4NCBI
cM Map1656.84NCBI
Lca5l
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0NW_00495540738,176,533 - 38,220,781 (-)NCBIChiLan1.0ChiLan1.0
LCA5L
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v22235,496,720 - 35,544,584 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan12130,352,614 - 30,400,477 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v02125,759,740 - 25,800,006 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.12139,096,868 - 39,136,598 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl2139,096,878 - 39,136,550 (-)EnsemblpanPan2panpan1.1
LCA5L
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Dog10K_Boxer_Tasha3133,440,102 - 33,489,499 (-)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.03133,673,870 - 33,723,649 (-)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl3133,674,611 - 33,696,597 (-)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.13133,546,233 - 33,595,574 (-)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.03133,551,217 - 33,600,357 (-)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.03134,042,392 - 34,091,781 (-)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Lca5l
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_02440497133,657,692 - 33,709,803 (-)NCBIHiC_Itri_2
SpeTri2.0NW_0049365003,780,622 - 3,809,924 (+)NCBISpeTri2.0SpeTri2.0SpeTri2.0
LCA5L
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl13202,988,757 - 203,045,263 (-)EnsemblsusScr11Sscrofa11.1
Sscrofa11.113202,988,483 - 203,045,199 (-)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.213213,156,266 - 213,197,942 (-)NCBISscrofa10.2Sscrofa10.2susScr3
LCA5L
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.1283,351,507 - 83,395,096 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl283,350,583 - 83,376,491 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366605411,211,240 - 11,254,983 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Lca5l
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462474524,595,470 - 24,620,014 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462474524,578,503 - 24,619,991 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Lca5l
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v1448,495,123 - 48,514,166 (+)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Lca5l
183 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:18
Count of miRNA genes:18
Interacting mature miRNAs:18
Transcripts:ENSRNOT00000033486
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1300147Bp187Blood pressure QTL 1873.67arterial blood pressure trait (VT:2000000)blood pressure time series experimental set point of the baroreceptor response (CMO:0002593)112252474682951192Rat
724554Iddm17Insulin dependent diabetes mellitus QTL 170.001blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)114644316891443168Rat
1598841Memor7Memory QTL 7exploratory behavior trait (VT:0010471)total horizontal distance resulting from voluntary locomotion in an experimental apparatus (CMO:0001443)113330600878306008Rat
1598811Bp291Blood pressure QTL 2911.9arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113330600878306008Rat
634339Niddm50Non-insulin dependent diabetes mellitus QTL 503.32blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)111080612555806125Rat
634341Bw121Body weight QTL 1213.56abdominal fat pad mass (VT:1000711)abdominal fat pad weight (CMO:0000088)113532319955805892Rat
8694376Bw156Body weight QTL 1562.250.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
10755497Bp388Blood pressure QTL 3882.76arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)113294306789836615Rat
724517Uae18Urinary albumin excretion QTL 183.7urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)112995899657754989Rat
1300130Rf20Renal function QTL 204.44kidney glomerulus integrity trait (VT:0010546)kidney glomerulus diameter (CMO:0001166)113191546976915469Rat
2290451Scl58Serum cholesterol level QTL 583.48blood cholesterol amount (VT:0000180)plasma total cholesterol level (CMO:0000585)112631803155806125Rat
10058952Gmadr6Adrenal mass QTL 62.290.0072adrenal gland mass (VT:0010420)both adrenal glands wet weight to body weight ratio (CMO:0002411)113642841681428416Rat
1600394Edcs1Endometrial carcinoma susceptibility QTL12.90.04uterus morphology trait (VT:0001120)percentage of study population developing endometrioid carcinoma during a period of time (CMO:0001759)111282315257823152Rat
1558659Tescar1Testicular tumor resistance QTL 13.9testis integrity trait (VT:0010572)percentage of study population developing testis tumors during a period of time (CMO:0001261)113461876079618760Rat
724563Uae10Urinary albumin excretion QTL 106urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)112019354996351019Rat
9589032Epfw10Epididymal fat weight QTL 109.290.001epididymal fat pad mass (VT:0010421)epididymal fat pad weight to body weight ratio (CMO:0000658)113674945981749459Rat
9590313Scort20Serum corticosterone level QTL 206.510.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)113674945981749459Rat
8694424Bw162Body weight QTL 1623.80.001body lean mass (VT:0010483)lean tissue morphological measurement (CMO:0002184)113674945981749459Rat
631510Spl2Serum phospholipid level QTL 24.1blood phospholipid amount (VT:0006084)serum phospholipid level (CMO:0001171)112755668572556685Rat

Markers in Region
AU049222  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.21135,492,551 - 35,492,773 (+)MAPPERmRatBN7.2
Rnor_6.01136,544,243 - 36,544,464NCBIRnor6.0
Rnor_5.01140,074,872 - 40,075,093UniSTSRnor5.0
RGSC_v3.41136,500,154 - 36,500,375UniSTSRGSC3.4
Celera1132,979,382 - 32,979,603UniSTS
Cytogenetic Map11q11UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
15 3 39 135 62 61 30 52 30 6 220 114 5 113 59 89 31 10 10

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001415728 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017598043 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270688 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270689 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270690 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270691 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270692 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270693 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270694 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270695 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270696 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063270697 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC112406 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC142178 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC082082 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474083 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000011 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000033486   ⟹   ENSRNOP00000038113
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1148,930,631 - 48,964,527 (-)Ensembl
mRatBN7.2 Ensembl1135,461,278 - 35,481,377 (-)Ensembl
Rnor_6.0 Ensembl1136,512,974 - 36,533,073 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000108256   ⟹   ENSRNOP00000091461
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1148,930,127 - 48,964,551 (-)Ensembl
mRatBN7.2 Ensembl1135,461,118 - 35,495,047 (-)Ensembl
Ensembl Acc Id: ENSRNOT00000109801   ⟹   ENSRNOP00000085947
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl1148,930,127 - 48,964,551 (-)Ensembl
mRatBN7.2 Ensembl1135,461,118 - 35,495,047 (-)Ensembl
RefSeq Acc Id: NM_001415728   ⟹   NP_001402657
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,930,127 - 48,964,551 (-)NCBI
mRatBN7.21135,460,646 - 35,495,071 (-)NCBI
RefSeq Acc Id: XM_017598043   ⟹   XP_017453532
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,930,608 - 48,964,613 (-)NCBI
mRatBN7.21135,460,648 - 35,495,133 (-)NCBI
Rnor_6.01136,512,823 - 36,546,806 (-)NCBI
Sequence:
RefSeq Acc Id: XM_063270688   ⟹   XP_063126758
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,930,608 - 48,964,596 (-)NCBI
RefSeq Acc Id: XM_063270689   ⟹   XP_063126759
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,930,608 - 48,964,596 (-)NCBI
RefSeq Acc Id: XM_063270690   ⟹   XP_063126760
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,930,608 - 48,964,613 (-)NCBI
RefSeq Acc Id: XM_063270691   ⟹   XP_063126761
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,930,608 - 48,964,567 (-)NCBI
RefSeq Acc Id: XM_063270692   ⟹   XP_063126762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,930,608 - 48,964,584 (-)NCBI
RefSeq Acc Id: XM_063270693   ⟹   XP_063126763
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,930,608 - 48,964,584 (-)NCBI
RefSeq Acc Id: XM_063270694   ⟹   XP_063126764
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,930,608 - 48,964,613 (-)NCBI
RefSeq Acc Id: XM_063270695   ⟹   XP_063126765
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,930,608 - 48,964,596 (-)NCBI
RefSeq Acc Id: XM_063270696   ⟹   XP_063126766
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,930,608 - 48,964,596 (-)NCBI
RefSeq Acc Id: XM_063270697   ⟹   XP_063126767
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr81148,930,608 - 48,964,516 (-)NCBI
RefSeq Acc Id: XP_017453532   ⟸   XM_017598043
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A3I7 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000038113   ⟸   ENSRNOT00000033486
Ensembl Acc Id: ENSRNOP00000085947   ⟸   ENSRNOT00000109801
Ensembl Acc Id: ENSRNOP00000091461   ⟸   ENSRNOT00000108256
RefSeq Acc Id: NP_001402657   ⟸   NM_001415728
- UniProtKB: A0A8I6AG60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126764   ⟸   XM_063270694
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A3I7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126760   ⟸   XM_063270690
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AG60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126765   ⟸   XM_063270695
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063126758   ⟸   XM_063270688
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AG60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126766   ⟸   XM_063270696
- Peptide Label: isoform X3
RefSeq Acc Id: XP_063126759   ⟸   XM_063270689
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AG60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126763   ⟸   XM_063270693
- Peptide Label: isoform X2
- UniProtKB: A0A8I6A3I7 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126762   ⟸   XM_063270692
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AG60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126761   ⟸   XM_063270691
- Peptide Label: isoform X1
- UniProtKB: A0A8I6AG60 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_063126767   ⟸   XM_063270697
- Peptide Label: isoform X3
Protein Domains
Lebercilin

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-A0A140UHY0-F1-model_v2 AlphaFold A0A140UHY0 1-603 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562512 AgrOrtholog
BioCyc Gene G2FUF-21711 BioCyc
Ensembl Genes ENSRNOG00000028248 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000033486 ENTREZGENE
  ENSRNOT00000033486.8 UniProtKB/TrEMBL
  ENSRNOT00000108256 ENTREZGENE
  ENSRNOT00000108256.2 UniProtKB/TrEMBL
  ENSRNOT00000109801 ENTREZGENE
  ENSRNOT00000109801.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:7133412 IMAGE-MGC_LOAD
InterPro Lebercilin UniProtKB/TrEMBL
  Lebercilin_dom UniProtKB/TrEMBL
MGC_CLONE MGC:95255 IMAGE-MGC_LOAD
NCBI Gene 498065 ENTREZGENE
PANTHER LEBERCILIN-LIKE PROTEIN UniProtKB/TrEMBL
  PTHR16650 UniProtKB/TrEMBL
Pfam Lebercilin UniProtKB/TrEMBL
PhenoGen Lca5l PhenoGen
RatGTEx ENSRNOG00000028248 RatGTEx
UniProt A0A8I6A3I7 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AG60 ENTREZGENE, UniProtKB/TrEMBL
  Q66H14_RAT UniProtKB/TrEMBL
UniProt Secondary A0A140UHY0 UniProtKB/TrEMBL
  F1MAS2 UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2019-04-10 Lca5l  lebercilin LCA5 like  Lca5l  LCA5L, lebercilin like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2016-06-01 Lca5l  LCA5L, lebercilin like  Lca5l  Leber congenital amaurosis 5-like  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-03-31 Lca5l  Leber congenital amaurosis 5-like  LOC498065  similar to RIKEN cDNA 4921526F01 gene  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-02-09 LOC498065  similar to RIKEN cDNA 4921526F01 gene      Symbol and Name status set to provisional 70820 PROVISIONAL