Mageb1l1 (MAGE family member B1-like 1) - Rat Genome Database

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Gene: Mageb1l1 (MAGE family member B1-like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Mageb1l1 (Ensembl: AABR07038553.1)
Name: MAGE family member B1-like 1
RGD ID: 1562439
Description: INTERACTS WITH acrylamide
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: LOC503441; Mageb4; melanoma antigen family B 1-like 1; melanoma antigen family B, 4; melanoma-associated antigen B2-like; melanoma-associated antigen B4-like; RGD1562439; similar to melanoma antigen family B, 4
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8X54,837,396 - 54,847,437 (-)NCBIGRCr8GRCr8GRCr8
GRCr8 EnsemblX54,837,396 - 54,847,437 (-)EnsemblGRCr8
mRatBN7.2X50,886,626 - 50,896,669 (-)NCBImRatBN7.2mRatBN7.2
Rnor_6.0X54,864,441 - 54,931,190 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_5.0X55,067,957 - 55,069,218 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4X73,137,270 - 73,146,936 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
CeleraX51,419,664 - 51,429,680 (-)NCBICelera
Cytogenetic MapXq21NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
acrylamide  (EXP)

Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process

Cellular Component
nucleus  (IBA)

References

References - curated
# Reference Title Reference Citation
1. ClinVar Automated Import and Annotation Pipeline RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Mageb1l1
18 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:49
Count of miRNA genes:44
Interacting mature miRNAs:49
Transcripts:ENSRNOT00000074089
Prediction methods:Miranda, Pita, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
738035Stresp1Stress response QTL 14.960.000011stress-related behavior trait (VT:0010451)defensive burying - copingX45182909117740458Rat
1598837Memor13Memory QTL 133.2exploratory behavior trait (VT:0010471)difference between duration of physical contact or close proximity of test subject and social stimulus during sample phase and test phase (CMO:0002678)X4493088389930883Rat


Expression

RNA-SEQ Expression


Sequence


Ensembl Acc Id: ENSRNOT00000074089   ⟹   ENSRNOP00000089033
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 EnsemblX54,837,396 - 54,847,437 (-)Ensembl
RefSeq Acc Id: NM_001408866   ⟹   NP_001395795
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8X54,837,396 - 54,847,437 (-)NCBI
mRatBN7.2X50,886,626 - 50,896,669 (-)NCBI
Protein Sequences
Protein RefSeqs NP_001395795 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000089033
  ENSRNOP00000089033.2
RefSeq Acc Id: NP_001395795   ⟸   NM_001408866
- UniProtKB: A0A8I6AAQ4 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000089033   ⟸   ENSRNOT00000074089

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
BioCyc Gene G2FUF-2335 BioCyc
Ensembl Genes ENSRNOG00000048202 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000074089 ENTREZGENE
  ENSRNOT00000074089.4 UniProtKB/TrEMBL
Gene3D-CATH MAGE homology domain, winged helix WH1 motif UniProtKB/TrEMBL
  MAGE homology domain, winged helix WH2 motif UniProtKB/TrEMBL
InterPro MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
  MAGE_WH1 UniProtKB/TrEMBL
  MAGE_WH2 UniProtKB/TrEMBL
  MHD_dom UniProtKB/TrEMBL
NCBI Gene 503441 ENTREZGENE
PANTHER MELANOMA-ASSOCIATED ANTIGEN B1 UniProtKB/TrEMBL
  MELANOMA-ASSOCIATED ANTIGEN MAGE ANTIGEN UniProtKB/TrEMBL
Pfam MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
PhenoGen Mageb1l1 PhenoGen
PROSITE MAGE UniProtKB/TrEMBL
RatGTEx ENSRNOG00000048202 RatGTEx
SMART MAGE UniProtKB/TrEMBL
  MAGE_N UniProtKB/TrEMBL
UniProt A0A8I6AAQ4 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2021-02-18 Mageb1l1  MAGE family member B1-like 1  mageb1l1  melanoma antigen family B 1-like 1  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2012-10-11 mageb1l1  melanoma antigen family B 1-like 1  Mageb4  melanoma antigen family B, 4  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-02-29 Mageb4  melanoma antigen family B, 4  RGD1562439_predicted  similar to melanoma antigen family B, 4 (predicted)  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2006-03-07 RGD1562439_predicted  similar to melanoma antigen family B, 4 (predicted)  LOC503441  similar to melanoma antigen family B, 4  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC503441  similar to melanoma antigen family B, 4      Symbol and Name status set to provisional 70820 PROVISIONAL