Tmem156 (transmembrane protein 156)

Gene: Tmem156 (transmembrane protein 156) Rattus norvegicus

Analyze

Symbol:

Tmem156

Name:

transmembrane protein 156

RGD ID:

1562424

Description:

Predicted to be located in membrane. Orthologous to human TMEM156 (transmembrane protein 156); INTERACTS WITH 17beta-estradiol; 17beta-estradiol 3-benzoate; 2,3,7,8-tetrachlorodibenzodioxine.

Type:

protein-coding

RefSeq Status:

VALIDATED

Previously known as:

hypothetical protein LOC498365; LOC498365

RGD Orthologs

Alliance Orthologs

More Info

more info ...

More Info

Species	Gene symbol and name	Data Source	Assertion derived from	less info ...
Orthologs ¹				less info ...
Homo sapiens (human):	TMEM156 (transmembrane protein 156)	HGNC	EggNOG, Ensembl, HomoloGene, Inparanoid, NCBI, OMA, OrthoDB, OrthoMCL, Panther, PhylomeDB, Treefam
Mus musculus (house mouse):	Tmem156 (transmembrane protein 156)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chinchilla lanigera (long-tailed chinchilla):	Tmem156 (transmembrane protein 156)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Pan paniscus (bonobo/pygmy chimpanzee):	TMEM156 (transmembrane protein 156)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Canis lupus familiaris (dog):	TMEM156 (transmembrane protein 156)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Ictidomys tridecemlineatus (thirteen-lined ground squirrel):	Tmem156 (transmembrane protein 156)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Sus scrofa (pig):	TMEM156 (transmembrane protein 156)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Chlorocebus sabaeus (green monkey):	TMEM156 (transmembrane protein 156)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Heterocephalus glaber (naked mole-rat):	Tmem156 (transmembrane protein 156)	Transitive Ortholog Pipeline	Transitive Ortholog Pipeline
Other homologs ²
Homo sapiens (human):	DCAF6 (DDB1 and CUL4 associated factor 6)	HGNC	OMA
Alliance orthologs ³
Homo sapiens (human):	TMEM156 (transmembrane protein 156)	Alliance	DIOPT (Ensembl Compara\|HGNC\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)
Mus musculus (house mouse):	Tmem156 (transmembrane protein 156)	Alliance	DIOPT (Ensembl Compara\|Hieranoid\|InParanoid\|OMA\|OrthoFinder\|OrthoInspector\|PANTHER\|PhylomeDB\|SonicParanoid)

Latest Assembly:

mRatBN7.2 - mRatBN7.2 Assembly

Position:

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	43,568,131 - 43,606,109 (+)	NCBI		GRCr8
mRatBN7.2	14	43,221,464 - 43,252,453 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	43,223,381 - 43,252,449 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	43,577,453 - 43,613,094 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	44,877,412 - 44,913,053 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	43,357,577 - 43,393,221 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	44,888,902 - 44,918,377 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	44,889,287 - 44,918,373 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	44,700,605 - 44,731,482 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	45,925,110 - 45,954,140 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	42,367,690 - 42,396,765 (+)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

JBrowse:

View Region in Genome Browser (JBrowse)

Model

Annotation Click to see Annotation Detail View

Disease Annotations Click to see Annotation Detail View

genetic disease (ISO)

Hyperglycinemia, Lactic Acidosis, and Seizures (ISO)

Gene-Chemical Interaction Annotations Click to see Annotation Detail View

17beta-estradiol (EXP)

17beta-estradiol 3-benzoate (EXP)

2,3,7,8-tetrachlorodibenzodioxine (EXP,ISO)

2-palmitoylglycerol (ISO)

4,4'-sulfonyldiphenol (ISO)

acetamide (EXP)

acrylamide (EXP)

aflatoxin B1 (ISO)

all-trans-retinoic acid (ISO)

alpha-Zearalanol (EXP)

amphetamine (EXP)

benzo[a]pyrene (ISO)

bisphenol A (EXP)

calcitriol (ISO)

copper atom (ISO)

copper(0) (ISO)

crocidolite asbestos (ISO)

Cuprizon (EXP)

cyclosporin A (ISO)

Didecyldimethylammonium (ISO)

dimethylarsinic acid (ISO)

dioxygen (EXP)

disodium selenite (ISO)

doxorubicin (ISO)

ethyl methanesulfonate (ISO)

folic acid (ISO)

fulvestrant (ISO)

lipopolysaccharide (ISO)

methyl methanesulfonate (ISO)

methylarsonic acid (ISO)

methylisothiazolinone (ISO)

methylparaben (ISO)

mitomycin C (ISO)

O-methyleugenol (ISO)

PD 0325901 (ISO)

perfluorononanoic acid (ISO)

potassium chromate (ISO)

quercetin (ISO)

resveratrol (ISO)

S-(1,2-dichlorovinyl)-L-cysteine (ISO)

silicon dioxide (ISO)

sodium arsenate (ISO)

sodium arsenite (ISO)

sotorasib (ISO)

sulforaphane (ISO)

temozolomide (ISO)

testosterone (EXP)

trametinib (ISO)

triptonide (ISO)

valproic acid (ISO)

vincaleukoblastine (ISO)

Gene Ontology Annotations Click to see Annotation Detail View

Cellular Component

membrane (IEA)

References

References - curated

#	Reference Title	Reference Citation
1.	GOA pipeline	RGD automated data pipeline
2.	ClinVar Automated Import and Annotation Pipeline	RGD automated import pipeline for ClinVar variants, variant-to-disease annotations and gene-to-disease annotations
3.	Data Import for Chemical-Gene Interactions	RGD automated import pipeline for gene-chemical interactions
4.	Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences.	Strausberg RL, etal., Proc Natl Acad Sci U S A. 2002 Dec 24;99(26):16899-903. Epub 2002 Dec 11.

Genomics

Comparative Map Data

Tmem156
(Rattus norvegicus - Norway rat)

Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCr8	14	43,568,131 - 43,606,109 (+)	NCBI		GRCr8
mRatBN7.2	14	43,221,464 - 43,252,453 (+)	NCBI	mRatBN7.2	mRatBN7.2
mRatBN7.2 Ensembl	14	43,223,381 - 43,252,449 (+)	Ensembl		mRatBN7.2 Ensembl
UTH_Rnor_SHR_Utx	14	43,577,453 - 43,613,094 (+)	NCBI	Rnor_SHR	UTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.0	14	44,877,412 - 44,913,053 (+)	NCBI	Rnor_SHRSP	UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0	14	43,357,577 - 43,393,221 (+)	NCBI	Rnor_WKY	UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0	14	44,888,902 - 44,918,377 (+)	NCBI	Rnor6.0	Rnor_6.0	rn6	Rnor6.0
Rnor_6.0 Ensembl	14	44,889,287 - 44,918,373 (+)	Ensembl	Rnor6.0		rn6	Rnor6.0
Rnor_5.0	14	44,700,605 - 44,731,482 (+)	NCBI	Rnor5.0	Rnor_5.0	rn5	Rnor5.0
RGSC_v3.4	14	45,925,110 - 45,954,140 (+)	NCBI	RGSC3.4	RGSC_v3.4	rn4	RGSC3.4
Celera	14	42,367,690 - 42,396,765 (+)	NCBI		Celera
Cytogenetic Map	14	p11	NCBI

TMEM156
(Homo sapiens - human)

Human Assembly	Chr	Position (strand)	Source	Genome Browsers
Human Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCh38	4	38,966,744 - 39,032,409 (-)	NCBI	GRCh38	GRCh38	hg38	GRCh38
GRCh38.p14 Ensembl	4	38,966,744 - 39,032,922 (-)	Ensembl	GRCh38		hg38	GRCh38
GRCh37	4	38,968,365 - 39,034,029 (-)	NCBI	GRCh37	GRCh37	hg19	GRCh37
Build 36	4	38,644,817 - 38,710,436 (-)	NCBI	NCBI36	Build 36	hg18	NCBI36
Celera	4	39,406,541 - 39,471,858 (-)	NCBI		Celera
Cytogenetic Map	4	p14	NCBI
HuRef	4	38,293,340 - 38,358,636 (-)	NCBI		HuRef
CHM1_1	4	38,968,005 - 39,033,566 (-)	NCBI		CHM1_1
T2T-CHM13v2.0	4	38,936,798 - 39,002,606 (-)	NCBI		T2T-CHM13v2.0

Tmem156
(Mus musculus - house mouse)

Mouse Assembly	Chr	Position (strand)	Source	Genome Browsers
Mouse Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
GRCm39	5	65,215,558 - 65,249,524 (-)	NCBI	GRCm39	GRCm39	mm39
GRCm39 Ensembl	5	65,211,689 - 65,249,475 (-)	Ensembl		GRCm39 Ensembl
GRCm38	5	65,058,215 - 65,092,181 (-)	NCBI	GRCm38	GRCm38	mm10	GRCm38
GRCm38.p6 Ensembl	5	65,054,346 - 65,092,132 (-)	Ensembl	GRCm38		mm10	GRCm38
MGSCv37	5	65,456,174 - 65,482,794 (-)	NCBI	GRCm37	MGSCv37	mm9	NCBIm37
MGSCv36	5	65,333,482 - 65,370,764 (-)	NCBI		MGSCv36	mm8
Celera	5	62,341,657 - 62,368,281 (-)	NCBI		Celera
Cytogenetic Map	5	C3.1	NCBI
cM Map	5	33.58	NCBI

Tmem156
(Chinchilla lanigera - long-tailed chinchilla)

Chinchilla Assembly	Chr	Position (strand)	Source	Genome Browsers
Chinchilla Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChiLan1.0 Ensembl	NW_004955443	8,255,676 - 8,298,943 (+)	Ensembl	ChiLan1.0
ChiLan1.0	NW_004955443	8,255,689 - 8,312,634 (+)	NCBI	ChiLan1.0	ChiLan1.0

TMEM156
(Pan paniscus - bonobo/pygmy chimpanzee)

Bonobo Assembly	Chr	Position (strand)	Source	Genome Browsers
Bonobo Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
NHGRI_mPanPan1-v2	3	39,154,449 - 39,226,569 (-)	NCBI		NHGRI_mPanPan1-v2
NHGRI_mPanPan1	4	39,347,063 - 39,419,158 (-)	NCBI		NHGRI_mPanPan1
Mhudiblu_PPA_v0	4	33,294,287 - 33,360,117 (-)	NCBI	Mhudiblu_PPA_v0	Mhudiblu_PPA_v0	panPan3
PanPan1.1	4	39,149,096 - 39,214,112 (-)	NCBI	panpan1.1	PanPan1.1	panPan2
PanPan1.1 Ensembl	4	39,149,096 - 39,214,112 (-)	Ensembl	panpan1.1		panPan2

TMEM156
(Canis lupus familiaris - dog)

Dog Assembly	Chr	Position (strand)	Source	Genome Browsers
Dog Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
CanFam3.1	3	73,363,397 - 73,409,729 (+)	NCBI	CanFam3.1	CanFam3.1	canFam3	CanFam3.1
CanFam3.1 Ensembl	3	73,362,879 - 73,409,737 (+)	Ensembl	CanFam3.1		canFam3	CanFam3.1
Dog10K_Boxer_Tasha	3	75,910,960 - 75,957,077 (+)	NCBI		Dog10K_Boxer_Tasha
ROS_Cfam_1.0	3	74,137,976 - 74,190,559 (+)	NCBI		ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl	3	74,138,032 - 74,190,585 (+)	Ensembl		ROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1	3	73,404,223 - 73,456,744 (+)	NCBI		UMICH_Zoey_3.1
UNSW_CanFamBas_1.0	3	73,557,034 - 73,603,337 (+)	NCBI		UNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0	3	73,936,994 - 73,983,141 (+)	NCBI		UU_Cfam_GSD_1.0

Tmem156
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)

Squirrel Assembly	Chr	Position (strand)	Source	Genome Browsers
Squirrel Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HiC_Itri_2	NW_024405285	39,553,333 - 39,589,370 (+)	NCBI		HiC_Itri_2
SpeTri2.0 Ensembl	NW_004936482	6,712,289 - 6,744,866 (-)	Ensembl	SpeTri2.0	SpeTri2.0 Ensembl
SpeTri2.0	NW_004936482	6,708,908 - 6,744,860 (-)	NCBI	SpeTri2.0	SpeTri2.0		SpeTri2.0

TMEM156
(Sus scrofa - pig)

Pig Assembly	Chr	Position (strand)	Source	Genome Browsers
Pig Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
Sscrofa11.1 Ensembl	8	30,289,407 - 30,342,600 (-)	Ensembl	Sscrofa11.1		susScr11	Sscrofa11.1
Sscrofa11.1	8	30,289,424 - 30,342,633 (-)	NCBI	Sscrofa11.1	Sscrofa11.1	susScr11	Sscrofa11.1
Sscrofa10.2	8	31,769,686 - 31,822,918 (-)	NCBI	Sscrofa10.2	Sscrofa10.2	susScr3

TMEM156
(Chlorocebus sabaeus - green monkey)

Green Monkey Assembly	Chr	Position (strand)	Source	Genome Browsers
Green Monkey Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
ChlSab1.1	27	11,265,642 - 11,328,919 (+)	NCBI	ChlSab1.1	ChlSab1.1	chlSab2
ChlSab1.1 Ensembl	27	11,265,694 - 11,307,917 (+)	Ensembl	ChlSab1.1	ChlSab1.1 Ensembl	chlSab2
Vero_WHO_p1.0	NW_023666047	57,679,389 - 57,763,267 (+)	NCBI	Vero_WHO_p1.0	Vero_WHO_p1.0

Tmem156
(Heterocephalus glaber - naked mole-rat)

Naked Mole-Rat Assembly	Chr	Position (strand)	Source	Genome Browsers
Naked Mole-Rat Assembly	Chr	Position (strand)	Source	JBrowse	NCBI	UCSC	Ensembl
HetGla_female_1.0 Ensembl	NW_004624840	7,443,618 - 7,492,151 (-)	Ensembl	HetGla_female_1.0	HetGla_female_1.0 Ensembl	hetGla2
HetGla 1.0	NW_004624840	7,441,785 - 7,492,262 (-)	NCBI	HetGla_female_1.0	HetGla 1.0	hetGla2

Variants

Variants in Tmem156
187 total Variants

miRNA Target Status

Predicted Target Of

	Summary Value
Count of predictions:	58
Count of miRNA genes:	47
Interacting mature miRNAs:	54
Transcripts:	ENSRNOT00000032273
Prediction methods:	Miranda, Rnahybrid, Targetscan
Result types:	miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.

QTLs in Region (mRatBN7.2)

The following QTLs overlap with this region.

RGD ID	Symbol	Name	LOD	P Value	Trait	Sub Trait	Chr	Start	Stop	Species
1581500	Renag1	Renal agenesis QTL 1			kidney development trait (VT:0000527)	percentage of study population developing unilateral renal agenesis during a period of time (CMO:0000940)	14	8170668	68298175	Rat
1358296	Ael3	Aortic elastin QTL 3	3.7	0.00051	aorta elastin amount (VT:0003905)	aortic elastin	14	8267090	53267090	Rat
2302045	Pia39	Pristane induced arthritis QTL 39	4.9	0.001	blood immunoglobulin amount (VT:0002460)	serum immunoglobulin G2a level (CMO:0002116)	14	8267090	53267090	Rat
631839	Niddm37	Non-insulin dependent diabetes mellitus QTL 37	3.37		blood glucose amount (VT:0000188)	blood glucose level (CMO:0000046)	14	11030622	95876975	Rat
2313397	Coatc1	Coat color QTL1			coat/hair pigmentation trait (VT:0010463)	coat/hair color measurement (CMO:0001808)	14	18541332	63541332	Rat
10755459	Coatc15	Coat color QTL 15		0.01681	coat/hair pigmentation trait (VT:0010463)	pigmented ventral coat/hair area to total ventral coat/hair area ratio (CMO:0001812)	14	19836944	64836944	Rat
70187	Pancm5	Pancreatic morphology QTL 5	16.7		pancreas mass (VT:0010144)	pancreas weight to body weight ratio (CMO:0000630)	14	30320092	80829842	Rat
1300154	Bp189	Blood pressure QTL 189	3.04		arterial blood pressure trait (VT:2000000)	diastolic blood pressure (CMO:0000005)	14	30883777	68757901	Rat
2313048	Bss84	Bone structure and strength QTL 84	3.1	0.0001	tibia strength trait (VT:1000284)	tibia total energy absorbed before break (CMO:0001736)	14	37669719	82669719	Rat
2313084	Bss83	Bone structure and strength QTL 83	2.9	0.0001	tibia size trait (VT:0100001)	tibia midshaft endosteal cross-sectional area (CMO:0001716)	14	37669719	82669719	Rat
2313089	Bss81	Bone structure and strength QTL 81	3.4	0.0001	body length (VT:0001256)	body length, nose to rump (CMO:0000079)	14	37669719	82669719	Rat
2313100	Bss82	Bone structure and strength QTL 82	3	0.0001	tibia size trait (VT:0100001)	tibia midshaft cross-sectional area (CMO:0001717)	14	37669719	82669719	Rat
738037	Hcas6	Hepatocarcinoma susceptibility QTL 6	2.93		liver integrity trait (VT:0010547)	liver nonremodeling tumorous lesion volume to total liver volume ratio (CMO:0001464)	14	39057237	83368335	Rat
70214	Niddm28	Non-insulin dependent diabetes mellitus QTL 28	4.06		blood glucose amount (VT:0000188)	blood glucose level area under curve (AUC) (CMO:0000350)	14	39998251	75582726	Rat
631523	Pia13	Pristane induced arthritis QTL 13	3.3		joint integrity trait (VT:0010548)	joint inflammation composite score (CMO:0000919)	14	40793460	98037301	Rat
1300136	Rf22	Renal function QTL 22	3.9		renal blood flow trait (VT:2000006)	absolute change in renal vascular resistance (CMO:0001900)	14	42262529	95023211	Rat

Markers in Region

AU047388

Rat Assembly	Chr	Position (strand)	Source	JBrowse
mRatBN7.2	14	43,233,532 - 43,233,677 (+)	MAPPER	mRatBN7.2
Rnor_6.0	14	44,899,461 - 44,899,605	NCBI	Rnor6.0
Rnor_5.0	14	44,712,566 - 44,712,710	UniSTS	Rnor5.0
RGSC_v3.4	14	45,935,224 - 45,935,368	UniSTS	RGSC3.4
Celera	14	42,377,849 - 42,377,993	UniSTS
Cytogenetic Map	14	p11	UniSTS

Expression

RNA-SEQ Expression

High: > 1000 TPM value Medium: Between 11 and 1000 TPM
Low: Between 0.5 and 10 TPM Below Cutoff: < 0.5 TPM

	alimentary part of gastrointestinal system	circulatory system	endocrine system	exocrine system	hemolymphoid system	hepatobiliary system	integumental system	musculoskeletal system	nervous system	renal system	reproductive system	respiratory system	appendage
High
Medium	2		8		19							1
Low	1	6	46	39		39			16	12	30	10
Below cutoff		35	3	2		2	8	9	58	23	11		8

View RNA-SEQ Expression Data

Sequence

Nucleotide Sequences


RefSeq Transcripts	NM_001025138	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001419205	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	NM_001419206	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_008770160	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_039092289	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273463	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	XM_063273465	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
GenBank Nucleotide	BC091217	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	CH473981	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles
	JAXUCZ010000014	(Get FASTA)	NCBI Sequence Viewer	Search GEO for Microarray Profiles

RefSeq Acc Id:

ENSRNOT00000032273 ⟹ ENSRNOP00000032292

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	43,223,419 - 43,252,449 (+)	Ensembl
Rnor_6.0 Ensembl	14	44,889,402 - 44,918,373 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000091312 ⟹ ENSRNOP00000068932

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	43,223,419 - 43,252,293 (+)	Ensembl
Rnor_6.0 Ensembl	14	44,889,287 - 44,918,343 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000104482 ⟹ ENSRNOP00000088538

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	43,223,419 - 43,251,427 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000115778 ⟹ ENSRNOP00000077717

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	43,223,419 - 43,242,910 (+)	Ensembl

RefSeq Acc Id:

ENSRNOT00000116225 ⟹ ENSRNOP00000096446

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
mRatBN7.2 Ensembl	14	43,223,381 - 43,249,981 (+)	Ensembl

RefSeq Acc Id:

NM_001025138 ⟹ NP_001020309

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	43,577,050 - 43,606,109 (+)	NCBI
mRatBN7.2	14	43,223,394 - 43,252,453 (+)	NCBI
Rnor_6.0	14	44,889,402 - 44,918,377 (+)	NCBI
Rnor_5.0	14	44,700,605 - 44,731,482 (+)	NCBI
RGSC_v3.4	14	45,925,110 - 45,954,140 (+)	RGD
Celera	14	42,367,690 - 42,396,765 (+)	RGD

Sequence:

show sequence

GGAAACACATTTGTGTCATGTGAGTGGACATGACAGAAACAGCTTTCCTTAAATTATTTGTGGC
AATAGTGATCACCTTCATTTTAGTCCTGCCAGAATTTTTCAAGACACCAAAAGAGAGAACACTC
GAGCTCTCCTGTCTGGAAGTGTGCTTCCTACCTAATTCCACCTACCCACTTTCCTCCTTCAATT
TTTCTTCTGTGGCTTTTCTGCAACCAGCAGAGGAAACACAGACTATTATGGGAATCCTTCCAAA
TCACTCCAGTTTCCAAAGCTTCGCTGAGATTTGCCAAGGCATCACAAGTGGATTGCCAATGTGC
TCCTTGTGTTTGGTTTGTGAATCCAAAGGAGACGTGGATTTCACTTCTCAGGAACAAACATCAA
AAGGTCTTGTTATGAGGGGATCAAAGGAAGTGAAGGCAAGTGACTTTTACTCACCCTGTGAGTA
TTTTAATGTCACCGTCGCTCTTCTAGCTGATCCTGTGAAGGAAGATACTACCTGTACTCCTGAA
GGCCATCCTGGAGAAGCCATAGCTTTGGATGAAGATCCTGTCAGGGAAAAGTCTCTCAACCACA
CTTGTAGATTTATGAAAAATACAGACAATTGCACTCACATTTTCTTGCACCTAGAAATGGATGT
AAAGTCTGTCACTTGCTCCATGAAGATCACTTGGTACGTTTTAGTGCTATTCGTTTTCATGCTA
GGTATCATCTTTATTATCTACAAAATACTTGAAGAGCACAGGAGGGTGTGGAGACGGCAGAGTC
ATAACTACAAGTCTTCATCTGTTCTCTTCAGAGGGCATGACTCTGGGAAACTGAGCACTTTGAA
CGTGAGGGTCATTCCAGGCTATCCTTGGACAATCTGGACTAGAGACTTTGACGAATAATGAGAA
TTTTGTTTTGGATTGAGTGGACTGGTAAATGCTTGGGTCCAGCGAAGGAAGCACTGATAGGTGA
ATGGCGGGGCTCAGACCCTGAAGAGAATGAACAGGAGAGCGTCTATCTGACCCACAAGATCAAG
GGAACGAGAGTGTGAGCTATGGAAGACATGAGAGAGCATGGGAGTGCTCCCCTTCACCACCCGT
CGCCATCCCACGCAGCATGGACCTCAGGTCTCCATTCTGAGGAGCCAATGACCATGGATGCAGA
ACCTCTCATTGGATCACGTTGCAGGTGCAGGATAGTTTTTCCTACACAAATGATGTTTCTGTTT
GGCAGGTTACTTAAGTGGGCCTGTGTATTTATTCATACATTTATAAATCTTGCCTCTTTTGGCA
TAAGACTTTAAAAAAACTTTCAAGGATATTGAAATAAAAAGGATTTAAATGAAATGCCTTGAGT
ATTTAAATTCAATAGCAAATGTCTCCTCCGAGGCCTTTGGCTCCCATATTTGTTTAGGCCATCA
TGGATATCAGGACAAAGCCTGGGGATCAGTTTCAATAAGAAAAACACATAGACGCGTGACCAGC
TCTTCATATTGAAAAATAAAAACATATTTTCCAGAAAAAAAAAAAAAAAAAAAAAAAAAAAA

hide sequence

RefSeq Acc Id:

NM_001419205 ⟹ NP_001406134

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	43,577,050 - 43,606,109 (+)	NCBI
mRatBN7.2	14	43,223,394 - 43,252,453 (+)	NCBI

RefSeq Acc Id:

NM_001419206 ⟹ NP_001406135

RefSeq Status:

VALIDATED

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	43,577,050 - 43,606,109 (+)	NCBI
mRatBN7.2	14	43,223,394 - 43,252,453 (+)	NCBI

RefSeq Acc Id:

XM_039092289 ⟹ XP_038948217

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	43,568,196 - 43,605,935 (+)	NCBI
mRatBN7.2	14	43,221,464 - 43,251,788 (+)	NCBI

RefSeq Acc Id:

XM_063273463 ⟹ XP_063129533

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	43,568,131 - 43,605,935 (+)	NCBI

RefSeq Acc Id:

XM_063273465 ⟹ XP_063129535

Type:

CODING

Position:

Rat Assembly	Chr	Position (strand)	Source
GRCr8	14	43,568,196 - 43,596,425 (+)	NCBI

Protein Sequences


Protein RefSeqs	NP_001020309	(Get FASTA)	NCBI Sequence Viewer
	NP_001406134	(Get FASTA)	NCBI Sequence Viewer
	NP_001406135	(Get FASTA)	NCBI Sequence Viewer
	XP_038948217	(Get FASTA)	NCBI Sequence Viewer
	XP_063129533	(Get FASTA)	NCBI Sequence Viewer
	XP_063129535	(Get FASTA)	NCBI Sequence Viewer
GenBank Protein	AAH91217	(Get FASTA)	NCBI Sequence Viewer
	EDL90077	(Get FASTA)	NCBI Sequence Viewer
Ensembl Protein	ENSRNOP00000032292
	ENSRNOP00000032292.4
	ENSRNOP00000068932
	ENSRNOP00000068932.1
	ENSRNOP00000077717.1
	ENSRNOP00000088538
	ENSRNOP00000088538.1
	ENSRNOP00000096446.1
GenBank Protein	Q5BK38	(Get FASTA)	NCBI Sequence Viewer

RefSeq Acc Id:	NP_001020309 ⟸ NM_001025138
- Peptide Label:	isoform 3
- UniProtKB:	Q5BK38 (UniProtKB/Swiss-Prot), A0A8I5Y6N5 (UniProtKB/TrEMBL)
- Sequence:	show sequence MTETAFLKLFVAIVITFILVLPEFFKTPKERTLELSCLEVCFLPNSTYPLSSFNFSSVAFLQPA EETQTIMGILPNHSSFQSFAEICQGITSGLPMCSLCLVCESKGDVDFTSQEQTSKGLVMRGSKE VKASDFYSPCEYFNVTVALLADPVKEDTTCTPEGHPGEAIALDEDPVREKSLNHTCRFMKNTDN CTHIFLHLEMDVKSVTCSMKITWYVLVLFVFMLGIIFIIYKILEEHRRVWRRQSHNYKSSSVLF RGHDSGKLSTLNVRVIPGYPWTIWTRDFDE hide sequence

RefSeq Acc Id:

ENSRNOP00000068932 ⟸ ENSRNOT00000091312

RefSeq Acc Id:

ENSRNOP00000032292 ⟸ ENSRNOT00000032273

RefSeq Acc Id:	XP_038948217 ⟸ XM_039092289
- Peptide Label:	isoform X1
- UniProtKB:	A0A8I6GH70 (UniProtKB/TrEMBL), A6JDF5 (UniProtKB/TrEMBL)

RefSeq Acc Id:

ENSRNOP00000096446 ⟸ ENSRNOT00000116225

RefSeq Acc Id:

ENSRNOP00000077717 ⟸ ENSRNOT00000115778

RefSeq Acc Id:

ENSRNOP00000088538 ⟸ ENSRNOT00000104482

RefSeq Acc Id:	NP_001406135 ⟸ NM_001419206
- Peptide Label:	isoform 2

RefSeq Acc Id:	NP_001406134 ⟸ NM_001419205
- Peptide Label:	isoform 1
- UniProtKB:	A0A0G2JU22 (UniProtKB/TrEMBL)

RefSeq Acc Id:	XP_063129533 ⟸ XM_063273463
- Peptide Label:	isoform X2

RefSeq Acc Id:	XP_063129535 ⟸ XM_063273465
- Peptide Label:	isoform X3

Protein Structures

Name	Modeler	Protein Id	AA Range	Protein Structure
AF-Q5BK38-F1-model_v2	AlphaFold	Q5BK38	1-286	view protein structure

Transcriptome

eQTL		View at Phenogen
WGCNA		View at Phenogen
Tissue/Strain Expression		View at Phenogen

Promoters

RGD ID:

13699322

Promoter ID:

EPDNEW_R9844

Type:

single initiation site

Name:

Tmem156_1

Description:

transmembrane protein 156

SO ACC ID:

SO:0000170

Source:

EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)

Experiment Methods:

Single-end sequencing.

Position:

Rat Assembly	Chr	Position (strand)	Source
Rnor_6.0	14	44,889,378 - 44,889,438	EPDNEW

Additional Information

External Database Links

Database	Acc Id	Source(s)
AGR Gene	RGD:1562424	AgrOrtholog
BioCyc Gene	G2FUF-15731	BioCyc
Ensembl Genes	ENSRNOG00000026518	Ensembl, ENTREZGENE, UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Ensembl Transcript	ENSRNOT00000032273	ENTREZGENE
	ENSRNOT00000032273.5	UniProtKB/Swiss-Prot
	ENSRNOT00000091312	ENTREZGENE
	ENSRNOT00000091312.2	UniProtKB/TrEMBL
	ENSRNOT00000104482.1	UniProtKB/TrEMBL
	ENSRNOT00000115778.1	UniProtKB/TrEMBL
	ENSRNOT00000116225.1	UniProtKB/TrEMBL
IMAGE_CLONE	IMAGE:7384360	IMAGE-MGC_LOAD
InterPro	TMEM156	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
KEGG Report	rno:498365	UniProtKB/Swiss-Prot
MGC_CLONE	MGC:108944	IMAGE-MGC_LOAD
NCBI Gene	498365	ENTREZGENE
PANTHER	PTHR14788	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
	TRANSMEMBRANE PROTEIN 156	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
Pfam	TMEM156	UniProtKB/Swiss-Prot, UniProtKB/TrEMBL
PhenoGen	Tmem156	PhenoGen
RatGTEx	ENSRNOG00000026518	RatGTEx
UniProt	A0A0G2JU22	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I5Y6N5	ENTREZGENE, UniProtKB/TrEMBL
	A0A8I6AQJ6_RAT	UniProtKB/TrEMBL
	A0A8I6GH70	ENTREZGENE, UniProtKB/TrEMBL
	A6JDF5	ENTREZGENE, UniProtKB/TrEMBL
	Q5BK38	ENTREZGENE, UniProtKB/Swiss-Prot

Nomenclature History

Date	Current Symbol	Current Name	Previous Symbol	Previous Name	Description	Reference	Status
2008-03-05	Tmem156	transmembrane protein 156	LOC498365	hypothetical protein LOC498365	Nomenclature updated to reflect human and mouse nomenclature	1299863	APPROVED
2006-02-09	LOC498365	hypothetical protein LOC498365			Symbol and Name status set to provisional	70820	PROVISIONAL

Gene Annotator (Functional Annotation) unavailable	Gene Annotator (Annotation Distribution) unavailable	Variant Visualizer (Genomic Variants) unavailble Variant Visualizer (Genomic Variants) unavailable
Gene Annotator (Functional Annotation)	Gene Annotator (Annotation Distribution)	Variant Visualizer (Genomic Variants)

InterViewer (Protein-Protein Interactions) unavailable	Gviewer (Genome Viewer) unavailable	Variant Visualizer (Damaging Variants) unavailble Variant Visualizer (Damaging Variants) unavailable
InterViewer (Protein-Protein Interactions)	GViewer (Genome Viewer)	Variant Visualizer (Damaging Variants)

Gene Annotator (Annotation Comparison) unavailable	OLGA (Gene List Generator) unavailable
Gene Annotator (Annotation Comparison)	OLGA (Gene List Generator)	Excel (Download)

MOET (Multi-Ontology Enrichement) unavailable	GOLF (Gene-Ortholog Location Finder) unavailable
MOET (Multi-Ontology Enrichement)	GOLF (Gene-Ortholog Location Finder)

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