Rps17l1 (ribosomal protein S17 like 1) - Rat Genome Database

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Gene: Rps17l1 (ribosomal protein S17 like 1) Rattus norvegicus
Analyze
No known orthologs.
Symbol: Rps17l1
Name: ribosomal protein S17 like 1
RGD ID: 1562381
Description: Predicted to be a structural constituent of ribosome. Predicted to be involved in translation. Predicted to be located in cytosolic ribosome. Predicted to be part of cytosolic small ribosomal subunit. Human ortholog(s) of this gene implicated in Diamond-Blackfan anemia 4. Orthologous to human RPS17 (ribosomal protein S17); INTERACTS WITH 3-chloropropane-1,2-diol; bisphenol A.
Type: protein-coding
RefSeq Status: MODEL
Previously known as: 40S ribosomal protein S17-like; LOC314248; RGD1562381; similar to ribosomal protein S17; small ribosomal subunit protein eS17-like
RGD Orthologs
Alliance Orthologs
More Info homologs ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr86100,969,774 - 100,970,346 (-)NCBIGRCr8GRCr8GRCr8
mRatBN7.2695,236,565 - 95,237,253 (-)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl695,236,604 - 95,237,023 (-)EnsemblmRatBN7.2
Rnor_6.0699,575,733 - 99,576,213 (-)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl699,575,777 - 99,576,196 (-)Ensemblrn6Rnor6.0
Rnor_5.06108,980,896 - 108,981,350 (-)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.4699,105,294 - 99,105,701 (-)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera693,657,197 - 93,657,677 (-)NCBICelera
Cytogenetic Map6q24NCBI
JBrowse:




Gene-Chemical Interaction Annotations     Click to see Annotation Detail View
Gene Ontology Annotations     Click to see Annotation Detail View

Biological Process
translation  (IEA)

Cellular Component

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. GOA pipeline RGD automated data pipeline
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions

Genomics

Variants

.
Variants in Rps17l1
1 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:62
Count of miRNA genes:59
Interacting mature miRNAs:61
Transcripts:ENSRNOT00000040565
Prediction methods:Microtar, Miranda, Rnahybrid
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
4145119Mcs25Mammary carcinoma susceptibility QTL 250.0001mammary gland integrity trait (VT:0010552)ratio of deaths to total study population during a period of time (CMO:0001023)671278722116278722Rat
12801411Schws8Schwannoma susceptibility QTL 8nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)6100704576101593851Rat
70176Mcsm1Mammary carcinoma susceptibility modifier QTL 1mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)664367996109367996Rat
2293088Iddm28Insulin dependent diabetes mellitus QTL 285.21blood glucose amount (VT:0000188)blood glucose level (CMO:0000046)668767270135411972Rat
1331799Bp211Blood pressure QTL 2113.66407arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)688019181136741135Rat
10054138Gmadr3Adrenal mass QTL 33.680.00045adrenal gland mass (VT:0010420)both adrenal glands wet weight (CMO:0000164)690871046135871046Rat
1581563Uae33Urinary albumin excretion QTL 33urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)693560258136550638Rat
1641917Colcr5Colorectal carcinoma resistance QTL 53.180.0009intestine integrity trait (VT:0010554)benign colorectal tumor number (CMO:0001795)698944780143944780Rat
61414Pia3Pristane induced arthritis QTL 34.5joint integrity trait (VT:0010548)post-insult time to onset of experimental arthritis (CMO:0001450)6100704576136029228Rat
724524Uae2Urinary albumin excretion QTL 22.70.0005urine albumin amount (VT:0002871)urine albumin excretion rate (CMO:0000757)679198463144254945Rat
737827Hcar11Hepatocarcinoma resistance QTL 114.4liver integrity trait (VT:0010547)liver tumorous lesion number (CMO:0001068)646050607116278722Rat
2303624Vencon5Ventilatory control QTL 54.45respiration trait (VT:0001943)minute ventilation (CMO:0000132)693778632138778632Rat
1576309Emca7Estrogen-induced mammary cancer QTL 74mammary gland integrity trait (VT:0010552)mammary tumor number (CMO:0000343)620859430113082285Rat
2293837Kiddil1Kidney dilation QTL 13.7kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
61329Eae9Experimental allergic encephalomyelitis QTL 93.7body mass (VT:0001259)change in body weight (CMO:0002045)684490437129490437Rat
2293842Kiddil3Kidney dilation QTL 34.3kidney pelvis morphology trait (VT:0004194)hydronephrosis severity score (CMO:0001208)686867923110125012Rat
10054123Srcrt6Stress Responsive Cort QTL 62.50.0043blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)690871046135871046Rat
724536Uae7Urinary albumin excretion QTL 73.5urine albumin amount (VT:0002871)urine albumin level (CMO:0000130)693560258136550638Rat
1576302Schws4Schwannoma susceptibility QTL 40.0078nervous system integrity trait (VT:0010566)percentage of study population developing trigeminal nerve neurilemmomas during a period of time (CMO:0002017)678204640123204640Rat
1581550Pur8Proteinuria QTL 8urine total protein amount (VT:0000032)urine total protein excretion rate (CMO:0000756)693560258136550638Rat
1300075Glom7Glomerulus QTL 75.60.0000002kidney glomerulus morphology trait (VT:0005325)count of superficial glomeruli not directly contacting the kidney surface (CMO:0001002)676937178121937178Rat
1331789Rf37Renal function QTL 373.224kidney blood vessel physiology trait (VT:0100012)absolute change in renal vascular resistance (CMO:0001900)686494122112380234Rat
1331725Bp212Blood pressure QTL 2123.52475arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)699437079125323237Rat
1331722Thshl1Thyroid stimulating hormone level QTL 111.70.0001blood thyroid-stimulating hormone amount (VT:0005119)serum thyroid stimulating hormone level (CMO:0001248)699708426112483760Rat


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
10 9 38 78 68 66 38 27 38 5 179 85 64 39 60 28 4 4

Sequence


Ensembl Acc Id: ENSRNOT00000040565   ⟹   ENSRNOP00000041458
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl695,236,604 - 95,237,023 (-)Ensembl
Rnor_6.0 Ensembl699,575,777 - 99,576,196 (-)Ensembl
RefSeq Acc Id: XM_234319   ⟹   XP_234319
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr86100,969,774 - 100,970,346 (-)NCBI
mRatBN7.2695,236,565 - 95,237,253 (-)NCBI
Rnor_6.0699,575,733 - 99,576,213 (-)NCBI
Rnor_5.06108,980,896 - 108,981,350 (-)NCBI
RGSC_v3.4699,105,294 - 99,105,701 (-)RGD
Sequence:
Protein Sequences
Protein RefSeqs XP_234319 (Get FASTA)   NCBI Sequence Viewer  
Ensembl Protein ENSRNOP00000041458.5
RefSeq Acc Id: XP_234319   ⟸   XM_234319
- UniProtKB: D3ZM01 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000041458   ⟸   ENSRNOT00000040565

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZM01-F1-model_v2 AlphaFold D3ZM01 1-139 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen


Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562381 AgrOrtholog
BioCyc Gene G2FUF-37053 BioCyc
Ensembl Genes ENSRNOG00000029835 Ensembl
  ENSRNOG00000045885 UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000040565.6 UniProtKB/TrEMBL
Gene3D-CATH 1.10.60.20 UniProtKB/TrEMBL
InterPro Ribosomal_S17e UniProtKB/TrEMBL
  RPS17e-like_sf UniProtKB/TrEMBL
NCBI Gene 314248 ENTREZGENE
PANTHER 40S RIBOSOMAL PROTEIN S17 UniProtKB/TrEMBL
  Ribosomal_S17E UniProtKB/TrEMBL
Pfam Ribosomal_S17e UniProtKB/TrEMBL
PhenoGen Rps17l1 PhenoGen
RatGTEx ENSRNOG00000029835 RatGTEx
  ENSRNOG00000045885 RatGTEx
Superfamily-SCOP SSF116820 UniProtKB/TrEMBL
UniProt D3ZM01 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2023-09-19 Rps17l1  ribosomal protein S17 like 1  RGD1562381  similar to ribosomal protein S17  Symbol and Name Changed 1299863 APPROVED
2008-04-30 RGD1562381  similar to ribosomal protein S17   RGD1562381_predicted  similar to ribosomal protein S17 (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562381_predicted  similar to ribosomal protein S17 (predicted)  LOC314248  similar to ribosomal protein S17  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC314248  similar to ribosomal protein S17      Symbol and Name status set to provisional 70820 PROVISIONAL