Fam193b (family with sequence similarity 193, member B) - Rat Genome Database

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Gene: Fam193b (family with sequence similarity 193, member B) Rattus norvegicus
Analyze
Symbol: Fam193b
Name: family with sequence similarity 193, member B
RGD ID: 1562335
Description: Predicted to be active in cytoplasm and nucleus. Orthologous to human FAM193B (family with sequence similarity 193 member B); INTERACTS WITH 17beta-estradiol; 2,3,7,8-tetrachlorodibenzodioxine; 2,3,7,8-Tetrachlorodibenzofuran.
Type: protein-coding
RefSeq Status: VALIDATED
Previously known as: hypothetical protein LOC498703; LOC498703; RGD1562335; similar to mKIAA1931 protein; uncharacterized protein LOC498703
RGD Orthologs
Human
Mouse
Chinchilla
Bonobo
Dog
Squirrel
Pig
Green Monkey
Naked Mole-Rat
Black Rat
Alliance Orthologs
More Info more info ...
Latest Assembly: GRCr8 - GRCr8 Assembly
Position:
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,071,974 - 9,104,659 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl179,071,795 - 9,104,656 (+)EnsemblGRCr8
mRatBN7.2179,066,818 - 9,099,511 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,066,707 - 9,099,508 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx179,084,349 - 9,115,776 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,614,369 - 10,645,593 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,080,738 - 9,112,166 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,595,742 - 9,628,414 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,595,761 - 9,628,413 (+)Ensemblrn6Rnor6.0
Rnor_5.01711,704,516 - 11,737,150 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41715,112,073 - 15,143,497 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera179,146,729 - 9,178,104 (+)NCBICelera
Cytogenetic Map17p14NCBI
JBrowse:




Gene Ontology Annotations     Click to see Annotation Detail View

Cellular Component
cytoplasm  (IBA,IEA,ISO)
nucleolus  (IEA,ISO)
nucleoplasm  (IEA,ISO)
nucleus  (IBA,IEA,ISO)

Molecular Function

References

References - curated
# Reference Title Reference Citation
1. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. Gaudet P, etal., Brief Bioinform. 2011 Sep;12(5):449-62. doi: 10.1093/bib/bbr042. Epub 2011 Aug 27.
2. Data Import for Chemical-Gene Interactions RGD automated import pipeline for gene-chemical interactions
Additional References at PubMed
PMID:12477932   PMID:21177767  


Genomics

Comparative Map Data
Fam193b
(Rattus norvegicus - Norway rat)
Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCr8179,071,974 - 9,104,659 (+)NCBIGRCr8GRCr8GRCr8
GRCr8 Ensembl179,071,795 - 9,104,656 (+)EnsemblGRCr8
mRatBN7.2179,066,818 - 9,099,511 (+)NCBImRatBN7.2mRatBN7.2
mRatBN7.2 Ensembl179,066,707 - 9,099,508 (+)EnsemblmRatBN7.2
UTH_Rnor_SHR_Utx179,084,349 - 9,115,776 (+)NCBIUTH_Rnor_SHR_UtxUTH_Rnor_SHR_Utx
UTH_Rnor_SHRSP_BbbUtx_1.01710,614,369 - 10,645,593 (+)NCBIUTH_Rnor_SHRSP_BbbUtx_1.0UTH_Rnor_SHRSP_BbbUtx_1.0
UTH_Rnor_WKY_Bbb_1.0179,080,738 - 9,112,166 (+)NCBIUTH_Rnor_WKY_Bbb_1.0UTH_Rnor_WKY_Bbb_1.0
Rnor_6.0179,595,742 - 9,628,414 (+)NCBIRnor_6.0Rnor_6.0rn6Rnor6.0
Rnor_6.0 Ensembl179,595,761 - 9,628,413 (+)Ensemblrn6Rnor6.0
Rnor_5.01711,704,516 - 11,737,150 (+)NCBIRnor_5.0Rnor_5.0rn5
RGSC_v3.41715,112,073 - 15,143,497 (+)NCBIRGSC_v3.4RGSC_v3.4rn4
Celera179,146,729 - 9,178,104 (+)NCBICelera
Cytogenetic Map17p14NCBI
FAM193B
(Homo sapiens - human)
Human AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCh385177,519,788 - 177,554,563 (-)NCBIGRCh38GRCh38hg38GRCh38
GRCh38.p14 Ensembl5177,519,788 - 177,554,586 (-)Ensemblhg38GRCh38
GRCh375176,946,789 - 176,981,564 (-)NCBIGRCh37GRCh37hg19GRCh37
Build 365176,879,396 - 176,914,144 (-)NCBIBuild 36Build 36hg18NCBI36
Celera5171,520,903 - 171,555,672 (+)NCBICelera
Cytogenetic Map5q35.3NCBI
HuRef5171,866,585 - 171,901,166 (-)NCBIHuRef
CHM1_15176,379,285 - 176,413,866 (-)NCBICHM1_1
T2T-CHM13v2.05178,062,047 - 178,096,824 (-)NCBIT2T-CHM13v2.0
Fam193b
(Mus musculus - house mouse)
Mouse AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
GRCm391355,687,129 - 55,718,920 (-)NCBIGRCm39GRCm39mm39
GRCm39 Ensembl1355,687,129 - 55,718,933 (-)EnsemblGRCm39 EnsemblGRCm39
GRCm381355,539,316 - 55,571,120 (-)NCBIGRCm38GRCm38mm10GRCm38
GRCm38.p6 Ensembl1355,539,316 - 55,571,120 (-)Ensemblmm10GRCm38
MGSCv371355,640,677 - 55,672,481 (-)NCBIMGSCv37MGSCv37mm9NCBIm37
MGSCv361355,548,941 - 55,559,631 (-)NCBIMGSCv36mm8
Celera1356,593,438 - 56,625,240 (-)NCBICelera
Cytogenetic Map13B1NCBI
cM Map1330.06NCBI
Fam193b
(Chinchilla lanigera - long-tailed chinchilla)
Chinchilla AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChiLan1.0 EnsemblNW_00495540829,758,629 - 29,774,099 (-)Ensembl
ChiLan1.0NW_00495540829,756,057 - 29,788,349 (-)NCBIChiLan1.0ChiLan1.0
FAM193B
(Pan paniscus - bonobo/pygmy chimpanzee)
Bonobo AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
NHGRI_mPanPan1-v24172,602,864 - 172,637,492 (-)NCBINHGRI_mPanPan1-v2
NHGRI_mPanPan15170,742,405 - 170,777,717 (-)NCBINHGRI_mPanPan1
Mhudiblu_PPA_v05172,820,255 - 172,855,574 (-)NCBIMhudiblu_PPA_v0Mhudiblu_PPA_v0panPan3
PanPan1.15179,881,778 - 179,915,942 (-)NCBIPanPan1.1PanPan1.1panPan2
PanPan1.1 Ensembl5179,884,021 - 179,915,964 (-)EnsemblpanPan2panpan1.1
FAM193B
(Canis lupus familiaris - dog)
Dog AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
CanFam3.1435,818,805 - 35,852,053 (+)NCBICanFam3.1CanFam3.1canFam3CanFam3.1
CanFam3.1 Ensembl435,818,087 - 35,852,053 (+)EnsemblcanFam3CanFam3.1
Dog10K_Boxer_Tasha435,786,745 - 35,819,886 (+)NCBIDog10K_Boxer_TashaDog10K_Boxer_Tasha
ROS_Cfam_1.0436,185,479 - 36,218,631 (+)NCBIROS_Cfam_1.0ROS_Cfam_1.0
ROS_Cfam_1.0 Ensembl436,185,360 - 36,218,631 (+)EnsemblROS_Cfam_1.0 Ensembl
UMICH_Zoey_3.1436,011,091 - 36,044,216 (+)NCBIUMICH_Zoey_3.1
UNSW_CanFamBas_1.0436,196,837 - 36,229,992 (+)NCBIUNSW_CanFamBas_1.0
UU_Cfam_GSD_1.0436,704,314 - 36,739,341 (+)NCBIUU_Cfam_GSD_1.0UU_Cfam_GSD_1.0
Fam193b
(Ictidomys tridecemlineatus - thirteen-lined ground squirrel)
Squirrel AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HiC_Itri_2NW_024407213122,770,762 - 122,802,183 (-)NCBIHiC_Itri_2
SpeTri2.0 EnsemblNW_0049365971,798,347 - 1,813,164 (-)EnsemblSpeTri2.0 Ensembl
SpeTri2.0NW_0049365971,795,669 - 1,827,090 (-)NCBISpeTri2.0SpeTri2.0SpeTri2.0
FAM193B
(Sus scrofa - pig)
Pig AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Sscrofa11.1 Ensembl280,396,371 - 80,430,071 (+)EnsemblsusScr11Sscrofa11.1
Sscrofa11.1280,396,371 - 80,430,074 (+)NCBISscrofa11.1Sscrofa11.1susScr11Sscrofa11.1
Sscrofa10.2281,859,341 - 81,890,913 (-)NCBISscrofa10.2Sscrofa10.2susScr3
FAM193B
(Chlorocebus sabaeus - green monkey)
Green Monkey AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
ChlSab1.12379,530,685 - 79,567,667 (-)NCBIChlSab1.1ChlSab1.1chlSab2
ChlSab1.1 Ensembl2379,530,172 - 79,559,701 (-)EnsemblChlSab1.1 EnsemblchlSab2Vervet-AGM
Vero_WHO_p1.0NW_02366607510,723,112 - 10,759,678 (-)NCBIVero_WHO_p1.0Vero_WHO_p1.0
Fam193b
(Heterocephalus glaber - naked mole-rat)
Naked Mole-Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
HetGla_female_1.0 EnsemblNW_00462473312,551,274 - 12,567,785 (+)EnsemblHetGla_female_1.0 EnsemblhetGla2HetGla_female_1.0 Ensembl
HetGla 1.0NW_00462473312,535,844 - 12,569,162 (+)NCBIHetGla 1.0HetGla 1.0hetGla2
Fam193b
(Rattus rattus - black rat)
Black Rat AssemblyChrPosition (strand)SourceGenome Browsers
JBrowseNCBIUCSCEnsembl
Rrattus_CSIRO_v11473,854,656 - 73,886,673 (-)NCBIRrattus_CSIRO_v1

Variants

.
Variants in Fam193b
152 total Variants
miRNA Target Status (No longer updated)

Predicted Target Of
Summary Value
Count of predictions:74
Count of miRNA genes:60
Interacting mature miRNAs:74
Transcripts:ENSRNOT00000017349
Prediction methods:Miranda, Rnahybrid, Targetscan
Result types:miRGate_prediction

The detailed report is available here: Full Report CSV TAB Printer

miRNA Target Status data imported from miRGate (http://mirgate.bioinfo.cnio.es/).
For more information about miRGate, see PMID:25858286 or access the full paper here.


QTLs in Region (GRCr8)
The following QTLs overlap with this region.    Full Report CSV TAB Printer Gviewer
RGD IDSymbolNameLODP ValueTraitSub TraitChrStartStopSpecies
1354613Kidm14Kidney mass QTL 146.2kidney mass (VT:0002707)left kidney wet weight (CMO:0000083)17136045694Rat
1354581Bp247Blood pressure QTL 2474.5arterial blood pressure trait (VT:2000000)pulse pressure (CMO:0000292)17143999106Rat
2293664Bmd28Bone mineral density QTL 285.10.0001femur mineral mass (VT:0010011)trabecular volumetric bone mineral density (CMO:0001729)17436005727233623Rat
2324619Coatc4Coat color QTL 40.001coat/hair pigmentation trait (VT:0010463)pigmented dorsal coat/hair area to total dorsal coat/hair area ratio (CMO:0001811)17121499218Rat
1300123Bp194Blood pressure QTL 1942.82arterial blood pressure trait (VT:2000000)mean arterial blood pressure (CMO:0000009)17212084342054133Rat
2303627Vencon8Ventilatory control QTL 80.001respiration trait (VT:0001943)tidal volume (CMO:0000222)17473353449733534Rat
1581553Pur14Proteinuria QTL 145.30.0001urine total protein amount (VT:0000032)urine protein excretion rate (CMO:0000759)17798524316523460Rat
70184BpQTLcluster14Blood pressure QTL cluster 143.38arterial blood pressure trait (VT:2000000)systolic blood pressure (CMO:0000004)17857434232199534Rat
2302377Scl61Serum cholesterol level QTL 614.36blood HDL cholesterol amount (VT:0000184)serum high density lipoprotein cholesterol level (CMO:0000361)17622199858177198Rat
631207Niddm41Non-insulin dependent diabetes mellitus QTL 41blood glucose amount (VT:0000188)plasma glucose level (CMO:0000042)17138037084Rat
10401807Kidm52Kidney mass QTL 52kidney mass (VT:0002707)both kidneys wet weight (CMO:0000085)17131706603Rat
10054088Scort28Serum corticosterone level QTL 282.040.0102blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17473353449733534Rat
1354662Rf49Renal function QTL 492.9blood creatinine amount (VT:0005328)plasma creatinine level (CMO:0000537)17143999106Rat
2293648Bmd31Bone mineral density QTL 314.50.0001femur size trait (VT:1000369)femoral neck cortical cross-sectional area (CMO:0001702)17436005727233623Rat
1354658Spl8Serum phospholipid level QTL 83.8blood VLDL phospholipid amount (VT:0010507)blood very low density lipoprotein phospholipid level (CMO:0001571)17143999106Rat
1641902Colcr7Colorectal carcinoma resistance QTL 73.350.0044intestine integrity trait (VT:0010554)benign colorectal tumor surface area measurement (CMO:0001799)17212084322087569Rat
1549900Iddm20Insulin dependent diabetes mellitus QTL 203.7pancreas integrity trait (VT:0010560)percentage of study population developing diabetes mellitus during a period of time (CMO:0001114)17122181410Rat
9590316Scort21Serum corticosterone level QTL 214.750.001blood corticosterone amount (VT:0005345)plasma corticosterone level (CMO:0001173)17122877318Rat

Markers in Region
BE120524  
Rat AssemblyChrPosition (strand)SourceJBrowse
mRatBN7.2179,088,684 - 9,088,846 (+)MAPPERmRatBN7.2
Rnor_6.0179,617,589 - 9,617,750NCBIRnor6.0
Rnor_5.01711,726,325 - 11,726,486UniSTSRnor5.0
RGSC_v3.41715,132,673 - 15,132,834UniSTSRGSC3.4
Celera179,167,279 - 9,167,440UniSTS
RH 3.4 Map1777.9UniSTS
Cytogenetic Map17p14UniSTS
RH141479  
Rat AssemblyChrPosition (strand)SourceJBrowse
RH 3.4 Map1778.2UniSTS
Cytogenetic Map17p14UniSTS


Expression

RNA-SEQ Expression

alimentary part of gastrointestinal system
appendage
circulatory system
ectoderm
endocrine system
endoderm
exocrine system
hemolymphoid system
hepatobiliary system
integumental system
mesenchyme
mesoderm
musculoskeletal system
nervous system
renal system
reproductive system
respiratory system
sensory system
visual system
16 12 67 162 91 90 59 92 59 6 356 192 11 141 81 92 31 17 17

Sequence

Nucleotide Sequences
RefSeq Transcripts NM_001170408 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253646 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_006253651 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_017600642 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095995 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095996 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095998 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039095999 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096000 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096001 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096002 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096003 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_039096004 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XM_063276686 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  XR_005495313 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
GenBank Nucleotide AC121413 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  AC139608 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  BC166819 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB717749 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CB719022 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  CH474032 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  DN936834 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  FQ211528 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles
  JAXUCZ010000017 (Get FASTA)   NCBI Sequence Viewer   Search GEO for Microarray Profiles

Ensembl Acc Id: ENSRNOT00000017349   ⟹   ENSRNOP00000017350
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl179,073,233 - 9,104,656 (+)Ensembl
mRatBN7.2 Ensembl179,068,082 - 9,099,508 (+)Ensembl
Rnor_6.0 Ensembl179,596,957 - 9,628,413 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000089990   ⟹   ENSRNOP00000068724
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl179,072,037 - 9,104,656 (+)Ensembl
mRatBN7.2 Ensembl179,066,886 - 9,099,508 (+)Ensembl
Rnor_6.0 Ensembl179,595,761 - 9,628,411 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000099981   ⟹   ENSRNOP00000097809
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,066,822 - 9,099,508 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000100699   ⟹   ENSRNOP00000096762
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl179,072,044 - 9,104,656 (+)Ensembl
mRatBN7.2 Ensembl179,066,837 - 9,099,508 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000114459   ⟹   ENSRNOP00000079577
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
mRatBN7.2 Ensembl179,079,739 - 9,099,508 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000116388   ⟹   ENSRNOP00000093024
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl179,071,795 - 9,104,656 (+)Ensembl
mRatBN7.2 Ensembl179,066,707 - 9,099,508 (+)Ensembl
Ensembl Acc Id: ENSRNOT00000117137   ⟹   ENSRNOP00000088708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8 Ensembl179,071,795 - 9,104,656 (+)Ensembl
mRatBN7.2 Ensembl179,066,707 - 9,099,508 (+)Ensembl
RefSeq Acc Id: NM_001170408   ⟹   NP_001163879
RefSeq Status: VALIDATED
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,073,233 - 9,104,659 (+)NCBI
mRatBN7.2179,068,082 - 9,099,511 (+)NCBI
Rnor_6.0179,596,957 - 9,628,414 (+)NCBI
Rnor_5.01711,704,516 - 11,737,150 (+)NCBI
RGSC_v3.41715,112,073 - 15,143,497 (+)RGD
Celera179,146,729 - 9,178,104 (+)RGD
Sequence:
RefSeq Acc Id: XM_006253646   ⟹   XP_006253708
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,071,979 - 9,104,659 (+)NCBI
mRatBN7.2179,066,838 - 9,099,511 (+)NCBI
Rnor_6.0179,595,742 - 9,628,414 (+)NCBI
Rnor_5.01711,704,516 - 11,737,150 (+)NCBI
Sequence:
RefSeq Acc Id: XM_006253651   ⟹   XP_006253713
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,073,207 - 9,104,659 (+)NCBI
mRatBN7.2179,066,995 - 9,099,511 (+)NCBI
Rnor_6.0179,595,767 - 9,628,414 (+)NCBI
Rnor_5.01711,704,516 - 11,737,150 (+)NCBI
Sequence:
RefSeq Acc Id: XM_017600642   ⟹   XP_017456131
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,072,155 - 9,104,659 (+)NCBI
mRatBN7.2179,067,006 - 9,099,511 (+)NCBI
Rnor_6.0179,595,929 - 9,628,414 (+)NCBI
Sequence:
RefSeq Acc Id: XM_039095995   ⟹   XP_038951923
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,071,980 - 9,104,659 (+)NCBI
mRatBN7.2179,066,818 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039095996   ⟹   XP_038951924
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,072,177 - 9,104,659 (+)NCBI
mRatBN7.2179,067,001 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039095998   ⟹   XP_038951926
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,073,230 - 9,104,659 (+)NCBI
mRatBN7.2179,068,055 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039095999   ⟹   XP_038951927
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,073,302 - 9,104,659 (+)NCBI
mRatBN7.2179,068,149 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039096000   ⟹   XP_038951928
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,072,159 - 9,104,659 (+)NCBI
mRatBN7.2179,067,008 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039096001   ⟹   XP_038951929
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,072,175 - 9,104,659 (+)NCBI
mRatBN7.2179,067,007 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039096002   ⟹   XP_038951930
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,071,974 - 9,104,659 (+)NCBI
mRatBN7.2179,066,995 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_039096003   ⟹   XP_038951931
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,071,978 - 9,095,167 (+)NCBI
mRatBN7.2179,066,833 - 9,090,018 (+)NCBI
RefSeq Acc Id: XM_039096004   ⟹   XP_038951932
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,071,980 - 9,104,659 (+)NCBI
mRatBN7.2179,066,837 - 9,099,511 (+)NCBI
RefSeq Acc Id: XM_063276686   ⟹   XP_063132756
Type: CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,073,207 - 9,104,659 (+)NCBI
RefSeq Acc Id: XR_005495313
Type: NON-CODING
Position:
Rat AssemblyChrPosition (strand)Source
GRCr8179,071,978 - 9,100,282 (+)NCBI
mRatBN7.2179,066,833 - 9,095,030 (+)NCBI
RefSeq Acc Id: NP_001163879   ⟸   NM_001170408
- UniProtKB: D3ZDR1 (UniProtKB/TrEMBL),   A0A8I6G5I0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253708   ⟸   XM_006253646
- Peptide Label: isoform X1
- UniProtKB: A0A8I6A731 (UniProtKB/TrEMBL),   A0A8I6AF06 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_006253713   ⟸   XM_006253651
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G5I0 (UniProtKB/TrEMBL)
- Sequence:
RefSeq Acc Id: XP_017456131   ⟸   XM_017600642
- Peptide Label: isoform X2
- UniProtKB: A0A8I6ATD9 (UniProtKB/TrEMBL),   A0A8I6G5I0 (UniProtKB/TrEMBL)
- Sequence:
Ensembl Acc Id: ENSRNOP00000068724   ⟸   ENSRNOT00000089990
Ensembl Acc Id: ENSRNOP00000017350   ⟸   ENSRNOT00000017349
RefSeq Acc Id: XP_038951923   ⟸   XM_039095995
- Peptide Label: isoform X3
- UniProtKB: A0A8I6B4R3 (UniProtKB/TrEMBL),   A0A8I6AF06 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951931   ⟸   XM_039096003
- Peptide Label: isoform X8
RefSeq Acc Id: XP_038951932   ⟸   XM_039096004
- Peptide Label: isoform X9
- UniProtKB: B2RYL2 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951930   ⟸   XM_039096002
- Peptide Label: isoform X7
RefSeq Acc Id: XP_038951924   ⟸   XM_039095996
- Peptide Label: isoform X4
- UniProtKB: D3ZDR1 (UniProtKB/TrEMBL),   A0A8I6G5I0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951929   ⟸   XM_039096001
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G5I0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951928   ⟸   XM_039096000
- Peptide Label: isoform X5
- UniProtKB: A0A8I6G5I0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951926   ⟸   XM_039095998
- Peptide Label: isoform X4
- UniProtKB: D3ZDR1 (UniProtKB/TrEMBL),   A0A8I6G5I0 (UniProtKB/TrEMBL)
RefSeq Acc Id: XP_038951927   ⟸   XM_039095999
- Peptide Label: isoform X4
- UniProtKB: D3ZDR1 (UniProtKB/TrEMBL),   A0A8I6G5I0 (UniProtKB/TrEMBL)
Ensembl Acc Id: ENSRNOP00000096762   ⟸   ENSRNOT00000100699
Ensembl Acc Id: ENSRNOP00000093024   ⟸   ENSRNOT00000116388
Ensembl Acc Id: ENSRNOP00000088708   ⟸   ENSRNOT00000117137
Ensembl Acc Id: ENSRNOP00000079577   ⟸   ENSRNOT00000114459
Ensembl Acc Id: ENSRNOP00000097809   ⟸   ENSRNOT00000099981
RefSeq Acc Id: XP_063132756   ⟸   XM_063276686
- Peptide Label: isoform X6
- UniProtKB: A6KAR0 (UniProtKB/TrEMBL)
Protein Domains
FAM193 C-terminal

Protein Structures
Name Modeler Protein Id AA Range Protein Structure
AF-D3ZDR1-F1-model_v2 AlphaFold D3ZDR1 1-777 view protein structure

Transcriptome

eQTL   View at Phenogen
WGCNA   View at Phenogen
Tissue/Strain Expression   View at Phenogen

Promoters
RGD ID:13700303
Promoter ID:EPDNEW_R10823
Type:initiation region
Name:Fam193b_1
Description:family with sequence similarity 193, member B
SO ACC ID:SO:0000170
Source:EPDNEW (Eukaryotic Promoter Database, http://epd.vital-it.ch/)
Experiment Methods:Single-end sequencing.
Position:
Rat AssemblyChrPosition (strand)Source
Rnor_6.0179,595,683 - 9,595,743EPDNEW

Additional Information

Database Acc Id Source(s)
AGR Gene RGD:1562335 AgrOrtholog
BioCyc Gene G2FUF-10215 BioCyc
Ensembl Genes ENSRNOG00000039807 Ensembl, ENTREZGENE, UniProtKB/TrEMBL
Ensembl Transcript ENSRNOT00000017349 ENTREZGENE
  ENSRNOT00000017349.8 UniProtKB/TrEMBL
  ENSRNOT00000089990 ENTREZGENE
  ENSRNOT00000089990.3 UniProtKB/TrEMBL
  ENSRNOT00000100699 ENTREZGENE
  ENSRNOT00000100699.2 UniProtKB/TrEMBL
  ENSRNOT00000116388.2 UniProtKB/TrEMBL
  ENSRNOT00000117137 ENTREZGENE
  ENSRNOT00000117137.2 UniProtKB/TrEMBL
IMAGE_CLONE IMAGE:8367512 IMAGE-MGC_LOAD
InterPro FAM193 UniProtKB/TrEMBL
  FAM193_C UniProtKB/TrEMBL
KEGG Report rno:498703 UniProtKB/TrEMBL
MGC_CLONE MGC:188694 IMAGE-MGC_LOAD
NCBI Gene 498703 ENTREZGENE
PANTHER PTHR15109 UniProtKB/TrEMBL
  PTHR15109:SF3 UniProtKB/TrEMBL
Pfam FAM193_C UniProtKB/TrEMBL
PhenoGen Fam193b PhenoGen
RatGTEx ENSRNOG00000039807 RatGTEx
UniProt A0A8I6A731 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6AF06 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6ATD9 ENTREZGENE
  A0A8I6B4R3 ENTREZGENE, UniProtKB/TrEMBL
  A0A8I6G5I0 ENTREZGENE
  A6KAR0 ENTREZGENE, UniProtKB/TrEMBL
  B2RYL2 ENTREZGENE, UniProtKB/TrEMBL
  D3ZDR1 ENTREZGENE, UniProtKB/TrEMBL


Nomenclature History
Date Current Symbol Current Name Previous Symbol Previous Name Description Reference Status
2010-05-25 Fam193b  family with sequence similarity 193, member B  RGD1562335  similar to mKIAA1931 protein  Nomenclature updated to reflect human and mouse nomenclature 1299863 APPROVED
2008-04-30 RGD1562335  similar to mKIAA1931 protein   RGD1562335_predicted  similar to mKIAA1931 protein (predicted)  'predicted' is removed 2292626 APPROVED
2006-03-07 RGD1562335_predicted  similar to mKIAA1931 protein (predicted)  LOC498703  similar to mKIAA1931 protein  Symbol and Name status set to approved 1299863 APPROVED
2006-02-09 LOC498703  similar to mKIAA1931 protein      Symbol and Name status set to provisional 70820 PROVISIONAL